This directory contains the Apis mellifera Amel_1.2 assembly
(apiMel1, Jul. 2004) from the Baylor College of Medicine HGSC Honey
Bee Genome Project. For more information, see the Baylor website:
http://www.hgsc.bcm.tmc.edu/projects/honeybee/.
Files included in this directory (updated nightly):
- *.sql files: the MySQL commands used to create the tables.
To see descriptions of the tables underlying Genome Browser annotation
tracks, select the table in the Table Browser:
http://genome.ucsc.edu/cgi-bin/hgTables?db=apiMel1
and click the "describe table schema" button. There is also a "view
table schema" link on the configuration page for each track.
- *.txt.gz files: the database tables in a tab-delimited format
compressed with gzip.
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If you plan to download a large file or multiple files from this
directory, we recommend you use ftp rather than downloading the files
via our website. To do so, ftp to hgdownload.cse.ucsc.edu, then go to
the directory goldenPath/apiMel1/database/. To download multiple
files, use the "mget" command:
mget <filename1> <filename2> ...
- or -
mget -a (to download all the files in the directory)
All the annotations in this directory are freely usable for any purpose.
For conditions of use regarding the A. mellifera sequence data, see
http://www.hgsc.bcm.tmc.edu/projects/conditions_for_use.html.
Name Last modified Size Description
Parent Directory -
xenoMrna.txt.gz 2016-02-21 09:43 121M
chainDm2Link.txt.gz 2006-01-19 05:51 19M
xenoRefSeqAli.txt.gz 2020-08-20 21:06 11M
xenoRefGene.txt.gz 2020-08-20 21:06 11M
xenoRefFlat.txt.gz 2020-08-20 21:06 9.8M
rmsk.txt.gz 2004-12-22 13:07 7.3M
all_mrna.txt.gz 2020-08-20 20:23 6.2M
genscanPep.txt.gz 2004-12-22 13:07 4.0M
all_est.txt.gz 2016-06-05 08:56 2.7M
netDm2.txt.gz 2006-01-19 05:51 2.6M
simpleRepeat.txt.gz 2004-12-22 13:07 2.2M
mrnaOrientInfo.txt.gz 2020-08-20 20:23 1.4M
intronEst.txt.gz 2016-06-05 08:57 1.2M
chainDm2.txt.gz 2006-01-19 05:51 1.2M
blastDm1FB.txt.gz 2004-12-22 13:06 914K
genscan.txt.gz 2005-01-09 04:31 841K
estOrientInfo.txt.gz 2016-06-05 08:57 805K
augustusGene.txt.gz 2015-07-26 10:05 711K
gold.txt.gz 2004-12-22 13:07 289K
gbDelete_tmp.txt.gz 2005-09-28 04:51 180K
gap.txt.gz 2004-12-22 13:07 143K
gcPercent.txt.gz 2004-12-22 13:07 97K
chromInfo.txt.gz 2004-12-22 13:07 52K
gbLoaded.txt.gz 2020-08-20 21:06 43K
microsat.txt.gz 2015-08-23 09:48 43K
netSyntenyDm1.txt.gz 2004-12-22 13:07 31K
trackDb.txt.gz 2023-03-28 13:46 13K
tableDescriptions.txt.gz 2024-12-07 02:03 4.6K
xenoMrna.sql 2016-02-21 09:42 2.4K
tableList.txt.gz 2024-12-08 03:29 2.3K
xenoRefSeqAli.sql 2020-08-20 21:06 2.1K
all_mrna.sql 2020-08-20 20:23 2.1K
intronEst.sql 2016-06-05 08:57 2.1K
all_est.sql 2016-06-05 08:56 2.1K
trackDb.sql 2023-03-28 13:46 2.1K
xenoRefGene.sql 2020-08-20 21:06 2.0K
augustusGene.sql 2015-07-26 10:05 1.9K
mrnaOrientInfo.sql 2020-08-20 20:23 1.8K
estOrientInfo.sql 2016-06-05 08:57 1.8K
hgFindSpec.sql 2023-03-28 13:46 1.8K
xenoRefFlat.sql 2020-08-20 21:06 1.7K
gbLoaded.sql 2020-08-20 21:06 1.6K
tableList.sql 2024-12-08 03:29 1.6K
microsat.sql 2015-08-23 09:48 1.5K
tableDescriptions.sql 2024-12-07 02:03 1.5K
bigFiles.sql 2024-12-08 03:29 1.4K
grp.sql 2014-03-02 03:37 1.4K
blastDm1FB.sql 2013-10-01 12:48 1.3K
netSyntenyDm1.sql 2013-10-01 12:48 1.3K
netDm2.sql 2013-10-01 12:48 1.3K
simpleRepeat.sql 2013-10-01 12:48 1.1K
rmsk.sql 2013-10-01 12:48 1.1K
chainDm2.sql 2013-10-01 12:48 878
gold.sql 2013-10-01 12:48 799
genscan.sql 2013-10-01 12:48 748
gap.sql 2013-10-01 12:48 722
hgFindSpec.txt.gz 2023-03-28 13:46 654
chainDm2Link.sql 2013-10-01 12:48 577
gcPercent.sql 2013-10-01 12:48 546
history.sql 2013-10-01 12:48 537
chromInfo.sql 2013-10-01 12:48 396
genscanPep.sql 2013-10-01 12:48 330
gbDelete_tmp.sql 2013-10-01 12:48 326
history.txt.gz 2004-12-22 13:07 232
grp.txt.gz 2014-03-02 03:37 223
bigFiles.txt.gz 2024-12-08 03:29 33