This directory contains the Apis mellifera Amel_1.2 assembly
(apiMel1, Jul. 2004) from the Baylor College of Medicine HGSC Honey
Bee Genome Project. For more information, see the Baylor website:
http://www.hgsc.bcm.tmc.edu/projects/honeybee/.
Files included in this directory (updated nightly):
- *.sql files: the MySQL commands used to create the tables.
To see descriptions of the tables underlying Genome Browser annotation
tracks, select the table in the Table Browser:
http://genome.ucsc.edu/cgi-bin/hgTables?db=apiMel1
and click the "describe table schema" button. There is also a "view
table schema" link on the configuration page for each track.
- *.txt.gz files: the database tables in a tab-delimited format
compressed with gzip.
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If you plan to download a large file or multiple files from this
directory, we recommend you use ftp rather than downloading the files
via our website. To do so, ftp to hgdownload.cse.ucsc.edu, then go to
the directory goldenPath/apiMel1/database/. To download multiple
files, use the "mget" command:
mget <filename1> <filename2> ...
- or -
mget -a (to download all the files in the directory)
All the annotations in this directory are freely usable for any purpose.
For conditions of use regarding the A. mellifera sequence data, see
http://www.hgsc.bcm.tmc.edu/projects/conditions_for_use.html.
Name Last modified Size Description
Parent Directory -
blastDm1FB.txt.gz 2004-12-22 13:06 914K
chromInfo.txt.gz 2004-12-22 13:07 52K
gap.txt.gz 2004-12-22 13:07 143K
gcPercent.txt.gz 2004-12-22 13:07 97K
genscanPep.txt.gz 2004-12-22 13:07 4.0M
gold.txt.gz 2004-12-22 13:07 289K
history.txt.gz 2004-12-22 13:07 232
netSyntenyDm1.txt.gz 2004-12-22 13:07 31K
rmsk.txt.gz 2004-12-22 13:07 7.3M
simpleRepeat.txt.gz 2004-12-22 13:07 2.2M
genscan.txt.gz 2005-01-09 04:31 841K
gbDelete_tmp.txt.gz 2005-09-28 04:51 180K
chainDm2.txt.gz 2006-01-19 05:51 1.2M
chainDm2Link.txt.gz 2006-01-19 05:51 19M
netDm2.txt.gz 2006-01-19 05:51 2.6M
blastDm1FB.sql 2013-10-01 12:48 1.3K
chainDm2.sql 2013-10-01 12:48 878
chainDm2Link.sql 2013-10-01 12:48 577
chromInfo.sql 2013-10-01 12:48 396
gap.sql 2013-10-01 12:48 722
gbDelete_tmp.sql 2013-10-01 12:48 326
gcPercent.sql 2013-10-01 12:48 546
genscan.sql 2013-10-01 12:48 748
genscanPep.sql 2013-10-01 12:48 330
gold.sql 2013-10-01 12:48 799
history.sql 2013-10-01 12:48 537
netDm2.sql 2013-10-01 12:48 1.3K
netSyntenyDm1.sql 2013-10-01 12:48 1.3K
rmsk.sql 2013-10-01 12:48 1.1K
simpleRepeat.sql 2013-10-01 12:48 1.1K
grp.sql 2014-03-02 03:37 1.4K
grp.txt.gz 2014-03-02 03:37 223
augustusGene.sql 2015-07-26 10:05 1.9K
augustusGene.txt.gz 2015-07-26 10:05 711K
microsat.sql 2015-08-23 09:48 1.5K
microsat.txt.gz 2015-08-23 09:48 43K
xenoMrna.sql 2016-02-21 09:42 2.4K
xenoMrna.txt.gz 2016-02-21 09:43 121M
all_est.sql 2016-06-05 08:56 2.1K
all_est.txt.gz 2016-06-05 08:56 2.7M
estOrientInfo.sql 2016-06-05 08:57 1.8K
estOrientInfo.txt.gz 2016-06-05 08:57 805K
intronEst.sql 2016-06-05 08:57 2.1K
intronEst.txt.gz 2016-06-05 08:57 1.2M
all_mrna.sql 2020-08-20 20:23 2.1K
all_mrna.txt.gz 2020-08-20 20:23 6.2M
mrnaOrientInfo.sql 2020-08-20 20:23 1.8K
mrnaOrientInfo.txt.gz 2020-08-20 20:23 1.4M
xenoRefGene.sql 2020-08-20 21:06 2.0K
xenoRefGene.txt.gz 2020-08-20 21:06 11M
xenoRefFlat.sql 2020-08-20 21:06 1.7K
xenoRefFlat.txt.gz 2020-08-20 21:06 9.8M
xenoRefSeqAli.sql 2020-08-20 21:06 2.1K
xenoRefSeqAli.txt.gz 2020-08-20 21:06 11M
gbLoaded.sql 2020-08-20 21:06 1.6K
gbLoaded.txt.gz 2020-08-20 21:06 43K
trackDb.sql 2023-03-28 13:46 2.1K
trackDb.txt.gz 2023-03-28 13:46 13K
hgFindSpec.sql 2023-03-28 13:46 1.8K
hgFindSpec.txt.gz 2023-03-28 13:46 654
tableDescriptions.sql 2024-12-07 02:03 1.5K
tableDescriptions.txt.gz 2024-12-07 02:03 4.6K
tableList.sql 2024-12-08 03:29 1.6K
tableList.txt.gz 2024-12-08 03:29 2.3K
bigFiles.sql 2024-12-08 03:29 1.4K
bigFiles.txt.gz 2024-12-08 03:29 33