This directory contains the Apis mellifera Amel_1.2 assembly (apiMel1, Jul. 2004) from the Baylor College of Medicine HGSC Honey Bee Genome Project. For more information, see the Baylor website: http://www.hgsc.bcm.tmc.edu/projects/honeybee/. Files included in this directory (updated nightly): - *.sql files: the MySQL commands used to create the tables. To see descriptions of the tables underlying Genome Browser annotation tracks, select the table in the Table Browser: http://genome.ucsc.edu/cgi-bin/hgTables?db=apiMel1 and click the "describe table schema" button. There is also a "view table schema" link on the configuration page for each track. - *.txt.gz files: the database tables in a tab-delimited format compressed with gzip. ----------------------------------------------------------------- If you plan to download a large file or multiple files from this directory, we recommend you use ftp rather than downloading the files via our website. To do so, ftp to hgdownload.cse.ucsc.edu, then go to the directory goldenPath/apiMel1/database/. To download multiple files, use the "mget" command: mget <filename1> <filename2> ... - or - mget -a (to download all the files in the directory) All the annotations in this directory are freely usable for any purpose. For conditions of use regarding the A. mellifera sequence data, see http://www.hgsc.bcm.tmc.edu/projects/conditions_for_use.html.
Name Last modified Size Description
Parent Directory - all_est.sql 2016-06-05 08:56 2.1K all_est.txt.gz 2016-06-05 08:56 2.7M all_mrna.sql 2020-08-20 20:23 2.1K all_mrna.txt.gz 2020-08-20 20:23 6.2M augustusGene.sql 2015-07-26 10:05 1.9K augustusGene.txt.gz 2015-07-26 10:05 711K bigFiles.sql 2024-10-06 03:32 1.4K bigFiles.txt.gz 2024-10-06 03:32 33 blastDm1FB.sql 2013-10-01 12:48 1.3K blastDm1FB.txt.gz 2004-12-22 13:06 914K chainDm2.sql 2013-10-01 12:48 878 chainDm2.txt.gz 2006-01-19 05:51 1.2M chainDm2Link.sql 2013-10-01 12:48 577 chainDm2Link.txt.gz 2006-01-19 05:51 19M chromInfo.sql 2013-10-01 12:48 396 chromInfo.txt.gz 2004-12-22 13:07 52K estOrientInfo.sql 2016-06-05 08:57 1.8K estOrientInfo.txt.gz 2016-06-05 08:57 805K gap.sql 2013-10-01 12:48 722 gap.txt.gz 2004-12-22 13:07 143K gbDelete_tmp.sql 2013-10-01 12:48 326 gbDelete_tmp.txt.gz 2005-09-28 04:51 180K gbLoaded.sql 2020-08-20 21:06 1.6K gbLoaded.txt.gz 2020-08-20 21:06 43K gcPercent.sql 2013-10-01 12:48 546 gcPercent.txt.gz 2004-12-22 13:07 97K genscan.sql 2013-10-01 12:48 748 genscan.txt.gz 2005-01-09 04:31 841K genscanPep.sql 2013-10-01 12:48 330 genscanPep.txt.gz 2004-12-22 13:07 4.0M gold.sql 2013-10-01 12:48 799 gold.txt.gz 2004-12-22 13:07 289K grp.sql 2014-03-02 03:37 1.4K grp.txt.gz 2014-03-02 03:37 223 hgFindSpec.sql 2023-03-28 13:46 1.8K hgFindSpec.txt.gz 2023-03-28 13:46 654 history.sql 2013-10-01 12:48 537 history.txt.gz 2004-12-22 13:07 232 intronEst.sql 2016-06-05 08:57 2.1K intronEst.txt.gz 2016-06-05 08:57 1.2M microsat.sql 2015-08-23 09:48 1.5K microsat.txt.gz 2015-08-23 09:48 43K mrnaOrientInfo.sql 2020-08-20 20:23 1.8K mrnaOrientInfo.txt.gz 2020-08-20 20:23 1.4M netDm2.sql 2013-10-01 12:48 1.3K netDm2.txt.gz 2006-01-19 05:51 2.6M netSyntenyDm1.sql 2013-10-01 12:48 1.3K netSyntenyDm1.txt.gz 2004-12-22 13:07 31K rmsk.sql 2013-10-01 12:48 1.1K rmsk.txt.gz 2004-12-22 13:07 7.3M simpleRepeat.sql 2013-10-01 12:48 1.1K simpleRepeat.txt.gz 2004-12-22 13:07 2.2M tableDescriptions.sql 2024-10-05 02:03 1.5K tableDescriptions.txt.gz 2024-10-05 02:03 4.6K tableList.sql 2024-10-06 03:32 1.6K tableList.txt.gz 2024-10-06 03:32 2.3K trackDb.sql 2023-03-28 13:46 2.1K trackDb.txt.gz 2023-03-28 13:46 13K xenoMrna.sql 2016-02-21 09:42 2.4K xenoMrna.txt.gz 2016-02-21 09:43 121M xenoRefFlat.sql 2020-08-20 21:06 1.7K xenoRefFlat.txt.gz 2020-08-20 21:06 9.8M xenoRefGene.sql 2020-08-20 21:06 2.0K xenoRefGene.txt.gz 2020-08-20 21:06 11M xenoRefSeqAli.sql 2020-08-20 21:06 2.1K xenoRefSeqAli.txt.gz 2020-08-20 21:06 11M