This directory contains a dump of the UCSC genome annotation database
for the Feb. 2003 release of the A. gambiae genome (anoGam1) from
the International Anopheles Genome Project (version MOZ2).
Files included in this directory (updated nightly):
- *.sql files: the MySQL commands used to create the tables.
To see descriptions of the tables underlying Genome Browser annotation
tracks, select the table in the Table Browser:
http://genome.ucsc.edu/cgi-bin/hgTables?db=anoGam1
and click the "describe table schema" button. There is also a "view
table schema" link on the configuration page for each track.
- *.txt.gz files: the database tables in a tab-delimited format
compressed with gzip.
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If you plan to download a large file or multiple files from this
directory, we recommend that you use ftp rather than downloading the
files via our website. To do so, ftp to hgdownload.cse.ucsc.edu,
then go to the directory goldenPath/anoGam1/database/. To download
multiple files, use the "mget" command:
mget <filename1> <filename2> ...
- or -
mget -a (to download all the files in the directory)
The A. gambiae sequence is made freely available by The International
Anopheles Genome Project. All the annotations in this directory are
freely available for public use.
Name Last modified Size Description
Parent Directory -
xenoMrna.txt.gz 2020-08-20 19:42 118M
chainDm6Link.txt.gz 2014-12-14 08:42 16M
genscanPep.txt.gz 2004-08-09 19:13 7.6M
xenoRefSeqAli.txt.gz 2020-08-20 20:23 6.6M
xenoRefGene.txt.gz 2020-08-20 20:23 6.5M
all_est.txt.gz 2016-06-12 06:05 6.1M
xenoRefFlat.txt.gz 2020-08-20 20:23 5.8M
ensPep.txt.gz 2004-08-09 19:12 3.3M
all_mrna.txt.gz 2020-03-01 04:47 3.0M
chainDm6.txt.gz 2014-12-14 08:42 2.2M
netDm6.txt.gz 2014-12-14 08:42 1.8M
chr2R_est.txt.gz 2016-06-12 06:05 1.8M
estOrientInfo.txt.gz 2016-06-12 06:05 1.7M
simpleRepeat.txt.gz 2004-08-09 19:15 1.6M
blastDm2FB.txt.gz 2005-07-28 05:23 1.3M
genscan.txt.gz 2005-01-09 04:31 1.3M
chr2L_est.txt.gz 2016-06-12 06:05 1.3M
chr3R_est.txt.gz 2016-06-12 06:05 1.2M
anoEstNcl.txt.gz 2005-06-10 04:23 1.0M
chr2R_mrna.txt.gz 2017-11-26 05:29 1.0M
chr2R_intronEst.txt.gz 2016-06-12 06:05 958K
geneid.txt.gz 2005-09-23 04:48 897K
chr3L_est.txt.gz 2016-06-12 06:05 863K
chrU_rmsk.txt.gz 2004-08-09 19:11 801K
ensGene.txt.gz 2004-08-09 19:11 790K
mrnaOrientInfo.txt.gz 2020-03-01 04:47 721K
augustusGene.txt.gz 2015-07-26 10:05 713K
chr2L_intronEst.txt.gz 2016-06-12 06:06 658K
chr3R_mrna.txt.gz 2020-03-01 04:46 656K
chr2R_rmsk.txt.gz 2004-08-09 19:10 651K
chr3R_intronEst.txt.gz 2016-06-12 06:06 631K
chr2L_mrna.txt.gz 2019-07-14 05:14 565K
chr2L_rmsk.txt.gz 2004-08-09 19:10 564K
chr3R_rmsk.txt.gz 2004-08-09 19:11 556K
chrX_est.txt.gz 2016-06-12 06:05 540K
anoEstTcl.txt.gz 2005-06-10 04:24 539K
chr3L_intronEst.txt.gz 2016-06-12 06:05 462K
chr3L_rmsk.txt.gz 2004-08-09 19:11 444K
chrX_rmsk.txt.gz 2004-08-09 19:11 423K
chr3L_mrna.txt.gz 2020-03-01 04:47 394K
chrU_est.txt.gz 2016-06-12 06:05 339K
chrX_intronEst.txt.gz 2016-06-12 06:06 248K
chrU_mrna.txt.gz 2016-06-12 06:06 241K
gbLoaded.txt.gz 2020-08-20 20:23 210K
chrM_est.txt.gz 2016-06-12 06:05 207K
gbDelete_tmp.txt.gz 2005-09-28 04:49 180K
ensGtp.txt.gz 2004-08-09 19:12 156K
chrX_mrna.txt.gz 2017-04-23 10:32 145K
chrU_gold.txt.gz 2004-08-09 19:11 144K
chrU_intronEst.txt.gz 2016-06-12 06:05 129K
chrU_gap.txt.gz 2004-08-09 19:11 99K
gcPercent.txt.gz 2004-10-24 04:18 85K
microsat.txt.gz 2015-08-23 09:42 46K
trackDb.txt.gz 2023-03-28 13:46 27K
trackDb_pushedout.txt.gz 2021-12-27 12:21 25K
anoEstExpressed.txt.gz 2005-06-10 04:23 20K
tableDescriptions.txt.gz 2024-04-20 02:03 5.1K
tableList.txt.gz 2024-04-21 03:29 4.7K
all_mrna.sql 2020-03-01 04:47 2.4K
all_est.sql 2016-06-12 06:05 2.4K
xenoMrna.sql 2020-08-20 19:42 2.4K
chr3R_intronEst.sql 2016-06-12 06:06 2.4K
chr3L_intronEst.sql 2016-06-12 06:05 2.4K
chr2R_intronEst.sql 2016-06-12 06:05 2.4K
chr2L_intronEst.sql 2016-06-12 06:06 2.4K
chrX_intronEst.sql 2016-06-12 06:06 2.4K
chrU_intronEst.sql 2016-06-12 06:05 2.4K
chr3R_mrna.sql 2020-03-01 04:46 2.4K
chr3L_mrna.sql 2020-03-01 04:47 2.4K
chr2R_mrna.sql 2017-11-26 05:29 2.4K
chr2L_mrna.sql 2019-07-14 05:14 2.4K
chrX_mrna.sql 2017-04-23 10:32 2.4K
chrU_mrna.sql 2016-06-12 06:06 2.4K
chrM_mrna.sql 2016-06-12 06:05 2.4K
chr3R_est.sql 2016-06-12 06:05 2.4K
chr3L_est.sql 2016-06-12 06:05 2.4K
chr2R_est.sql 2016-06-12 06:05 2.4K
chr2L_est.sql 2016-06-12 06:05 2.4K
chrX_est.sql 2016-06-12 06:05 2.4K
chrU_est.sql 2016-06-12 06:05 2.4K
chrM_est.sql 2016-06-12 06:05 2.4K
chrM_intronEst.sql 2008-03-18 03:23 2.2K
xenoRefSeqAli.sql 2020-08-20 20:23 2.1K
netDm6.sql 2014-12-14 08:42 2.1K
trackDb_pushedout.sql 2021-12-27 12:21 2.1K
trackDb.sql 2023-03-28 13:46 2.1K
xenoRefGene.sql 2020-08-20 20:23 2.0K
augustusGene.sql 2015-07-26 10:05 1.9K
mrnaOrientInfo.sql 2020-03-01 04:47 1.9K
estOrientInfo.sql 2016-06-12 06:05 1.9K
hgFindSpec_pushedout.sql 2021-12-27 12:21 1.8K
hgFindSpec.sql 2023-03-28 13:46 1.8K
xenoRefFlat.sql 2020-08-20 20:23 1.7K
chainDm6.sql 2014-12-14 08:42 1.7K
gbLoaded.sql 2020-08-20 20:23 1.7K
tableList.sql 2024-04-21 03:29 1.6K
chainDm6Link.sql 2014-12-14 08:42 1.5K
microsat.sql 2015-08-23 09:42 1.5K
tableDescriptions.sql 2024-04-20 02:03 1.5K
bigFiles.sql 2024-04-21 03:29 1.4K
grp.sql 2014-03-02 03:37 1.4K
blastDm2FB.sql 2013-10-01 12:48 1.3K
simpleRepeat.sql 2013-10-01 12:48 1.1K
chr3R_rmsk.sql 2013-10-01 12:48 1.0K
chr3L_rmsk.sql 2013-10-01 12:48 1.0K
chr2R_rmsk.sql 2013-10-01 12:48 1.0K
chr2L_rmsk.sql 2013-10-01 12:48 1.0K
chrX_rmsk.sql 2013-10-01 12:48 1.0K
chrU_rmsk.sql 2013-10-01 12:48 1.0K
chrM_rmsk.sql 2013-10-01 12:48 1.0K
ensGene.sql 2013-10-01 12:48 1.0K
geneid.sql 2013-10-01 12:48 1.0K
chrM_rmsk.txt.gz 2004-08-09 19:11 1.0K
anoEstTcl.sql 2013-10-01 12:48 946
anoEstNcl.sql 2013-10-01 12:48 946
hgFindSpec.txt.gz 2023-03-28 13:46 905
hgFindSpec_pushedout.txt.gz 2021-12-27 12:21 866
chr3R_gold.sql 2013-10-01 12:48 783
chr3L_gold.sql 2013-10-01 12:48 783
chr2R_gold.sql 2013-10-01 12:48 783
chr2L_gold.sql 2013-10-01 12:48 783
chrX_gold.sql 2013-10-01 12:48 781
chrU_gold.sql 2013-10-01 12:48 781
genscan.sql 2013-10-01 12:48 748
chr3R_gap.sql 2013-10-01 12:48 706
chr3L_gap.sql 2013-10-01 12:48 706
chr2R_gap.sql 2013-10-01 12:48 706
chr2L_gap.sql 2013-10-01 12:48 706
chrX_gap.sql 2013-10-01 12:48 704
chrU_gap.sql 2013-10-01 12:48 704
chrM_mrna.txt.gz 2016-06-12 06:05 665
chrM_gap.sql 2013-10-01 12:48 615
gcPercent.sql 2013-10-01 12:48 546
history.sql 2013-10-01 12:48 537
chr2R_gold.txt.gz 2004-08-09 19:10 489
chr3L_gold.txt.gz 2004-08-09 19:10 486
ensGtp.sql 2013-10-01 12:48 438
chromInfo.sql 2013-10-01 12:48 396
genscanPep.sql 2013-10-01 12:48 330
chr3L_gap.txt.gz 2004-08-09 19:10 327
gbDelete_tmp.sql 2013-10-01 12:48 326
chr2R_gap.txt.gz 2004-08-09 19:10 325
ensPep.sql 2013-10-01 12:48 322
history.txt.gz 2004-08-09 19:13 315
anoEstExpressed.sql 2013-10-01 12:48 307
chrX_gold.txt.gz 2004-08-09 19:11 273
chr2L_gold.txt.gz 2004-08-09 19:10 245
chr3R_gold.txt.gz 2004-08-09 19:11 235
grp.txt.gz 2014-03-02 03:37 223
chrX_gap.txt.gz 2004-08-09 19:11 194
chr3R_gap.txt.gz 2004-08-09 19:11 171
chr2L_gap.txt.gz 2004-08-09 19:10 171
chromInfo.txt.gz 2004-08-09 19:11 155
chrM_intronEst.txt.gz 2008-03-18 03:23 106
chrM_gap.txt.gz 2004-08-09 19:11 33
bigFiles.txt.gz 2024-04-21 03:29 33