0 nestedRepeats,237 0.01 cpgIslandExt,473 cpgIslandExtUnmasked,476 cpgIslandSuper,473 0.0f cpgIslandExt,449 cpgIslandExtUnmasked,452 cpgIslandSuper,449 0.1f cpgIslandExt,451 cpgIslandExtUnmasked,454 cpgIslandSuper,451 0.2 augustusGene,136 0.5 augustusGene,138 est,705 intronEst,786 mrna,421 xenoRefGene,261 0.6 cpgIslandExt,276 cpgIslandExtUnmasked,279 cpgIslandSuper,276 000 est,665 gap,126 gap,141 intronEst,746 1 augustusGene,310 chainBosTau7,388 chainBosTau7,519 chainBosTau7,709 chainBosTau7,1108 chainHg19,385 chainHg19,516 chainHg19,706 chainHg19,1105 chainMm9,385 chainMm9,516 chainMm9,706 chainMm9,1105 chainMonDom5,385 chainMonDom5,516 chainMonDom5,706 chainMonDom5,1105 chainNetBosTau7,391 chainNetBosTau7,522 chainNetBosTau7,712 chainNetBosTau7,1111 chainNetHg19,388 chainNetHg19,519 chainNetHg19,709 chainNetHg19,1108 chainNetMm9,388 chainNetMm9,519 chainNetMm9,709 chainNetMm9,1108 chainNetMonDom5,388 chainNetMonDom5,519 chainNetMonDom5,709 chainNetMonDom5,1108 cpgIslandExt,245 cpgIslandExt,429 cpgIslandExt,458 cpgIslandExt,485 cpgIslandExtUnmasked,248 cpgIslandExtUnmasked,432 cpgIslandExtUnmasked,461 cpgIslandExtUnmasked,488 cpgIslandSuper,245 cpgIslandSuper,429 cpgIslandSuper,458 cpgIslandSuper,485 ensGene,207 ensGene,209 est,788 intronEst,872 mrna,505 netBosTau7,388 netBosTau7,519 netBosTau7,709 netBosTau7,1108 netHg19,385 netHg19,516 netHg19,706 netHg19,1105 netMm9,385 netMm9,516 netMm9,706 netMm9,1105 netMonDom5,385 netMonDom5,516 netMonDom5,706 netMonDom5,1105 nscanGene,218 nscanGene,245 tRNAs,93 tRNAs,462 xenoMrna,496 xenoMrna,580 xenoRefGene,384 100 augustusGene,134 chainBosTau7,1076 chainHg19,1073 chainMm9,1073 chainMonDom5,1073 chainNetBosTau7,1079 chainNetHg19,1076 chainNetMm9,1076 chainNetMonDom5,1076 microsat,70 nestedRepeats,230 netBosTau7,1076 netHg19,1073 netMm9,1073 netMonDom5,1073 100.0 cpgIslandExt,474 cpgIslandExtUnmasked,477 cpgIslandSuper,474 1000 chainBosTau7,748 chainHg19,745 chainMm9,745 chainNetBosTau7,751 chainNetHg19,748 chainNetMm9,748 nestedRepeats,238 netBosTau7,748 netHg19,745 netMm9,745 1000-2000 augustusGene,161 103-7 chainBosTau7,1109 chainHg19,1106 chainMm9,1106 chainMonDom5,1106 chainNetBosTau7,1112 chainNetHg19,1109 chainNetMm9,1109 chainNetMonDom5,1109 netBosTau7,1109 netHg19,1106 netMm9,1106 netMonDom5,1106 10607616 nestedRepeats,394 rmsk,417 10718 gap,22 gold,23 10973072 nestedRepeats,361 rmsk,384 11 chainBosTau7,705 chainBosTau7,712 chainHg19,702 chainHg19,709 chainMm9,702 chainMm9,709 chainMonDom5,702 chainMonDom5,709 chainNetBosTau7,708 chainNetBosTau7,715 chainNetHg19,705 chainNetHg19,712 chainNetMm9,705 chainNetMm9,712 chainNetMonDom5,705 chainNetMonDom5,712 netBosTau7,705 netBosTau7,712 netHg19,702 netHg19,709 netMm9,702 netMm9,709 netMonDom5,702 netMonDom5,709 tRNAs,409 tRNAs,411 tRNAs,505 1100 chainMonDom5,723 chainMonDom5,735 chainNetMonDom5,726 chainNetMonDom5,738 netMonDom5,723 netMonDom5,735 111 chainBosTau7,707 chainBosTau7,713 chainHg19,704 chainHg19,710 chainMm9,704 chainMm9,710 chainMonDom5,704 chainMonDom5,710 chainNetBosTau7,710 chainNetBosTau7,716 chainNetHg19,707 chainNetHg19,713 chainNetMm9,707 chainNetMm9,713 chainNetMonDom5,707 chainNetMonDom5,713 netBosTau7,707 netBosTau7,713 netHg19,704 netHg19,710 netMm9,704 netMm9,710 netMonDom5,704 netMonDom5,710 11473003 nscanGene,248 11484-9 chainBosTau7,1078 chainHg19,1075 chainMm9,1075 chainMonDom5,1075 chainNetBosTau7,1081 chainNetHg19,1078 chainNetMm9,1078 chainNetMonDom5,1078 netBosTau7,1078 netHg19,1075 netMm9,1075 netMonDom5,1075 115-26 chainBosTau7,1040 chainHg19,1037 chainMm9,1037 chainMonDom5,1037 chainNetBosTau7,1043 chainNetHg19,1040 chainNetMm9,1040 chainNetMonDom5,1040 netBosTau7,1040 netHg19,1037 netMm9,1037 netMonDom5,1037 11752248 ensGene,212 117900 chainBosTau7,729 chainBosTau7,741 chainHg19,726 chainHg19,738 chainMm9,726 chainMm9,738 chainNetBosTau7,732 chainNetBosTau7,744 chainNetHg19,729 chainNetHg19,741 chainNetMm9,729 chainNetMm9,741 netBosTau7,729 netBosTau7,741 netHg19,726 netHg19,738 netMm9,726 netMm9,738 118300 chainBosTau7,753 chainHg19,750 chainMm9,750 chainNetBosTau7,756 chainNetHg19,753 chainNetMm9,753 netBosTau7,753 netHg19,750 netMm9,750 11928468 chainBosTau7,1042 chainHg19,1039 chainMm9,1039 chainMonDom5,1039 chainNetBosTau7,1045 chainNetHg19,1042 chainNetMm9,1042 chainNetMonDom5,1042 netBosTau7,1042 netHg19,1039 netMm9,1039 netMonDom5,1039 11932250 est,812 intronEst,896 mrna,529 xenoMrna,604 xenoRefGene,314 12 est,808 intronEst,892 mrna,525 numtS,612 numtSAssembled,614 numtSMitochondrion,616 numtSeq2012,615 xenoMrna,600 xenoRefGene,310 12111 chainBosTau7,715 chainHg19,712 chainMm9,712 chainMonDom5,712 chainNetBosTau7,718 chainNetHg19,715 chainNetMm9,715 chainNetMonDom5,715 netBosTau7,715 netHg19,712 netMm9,712 netMonDom5,712 1247-56 tRNAs,508 12529312 chainBosTau7,1111 chainHg19,1108 chainMm9,1108 chainMonDom5,1108 chainNetBosTau7,1114 chainNetHg19,1111 chainNetMm9,1111 chainNetMonDom5,1111 netBosTau7,1111 netHg19,1108 netMm9,1108 netMonDom5,1108 13 chainBosTau7,1107 chainHg19,1104 chainMm9,1104 chainMonDom5,1104 chainNetBosTau7,1110 chainNetHg19,1107 chainNetMm9,1107 chainNetMonDom5,1107 netBosTau7,1107 netHg19,1104 netMm9,1104 netMonDom5,1104 nscanGene,175 numtS,538 numtSAssembled,540 numtSMitochondrion,542 numtSeq2012,541 1300 chainBosTau7,749 chainHg19,746 chainMm9,746 chainNetBosTau7,752 chainNetHg19,749 chainNetMm9,749 netBosTau7,749 netHg19,746 netMm9,746 1400 chainMonDom5,747 chainNetMonDom5,750 netMonDom5,747 14500829 nscanGene,223 14500911 chainBosTau7,1080 chainHg19,1077 chainMm9,1077 chainMonDom5,1077 chainNetBosTau7,1083 chainNetHg19,1080 chainNetMm9,1080 chainNetMonDom5,1080 netBosTau7,1080 netHg19,1077 netMm9,1077 netMonDom5,1077 14534192 augustusGene,340 14681350 est,794 intronEst,878 mrna,511 xenoMrna,586 15 microsat,30 microsat,79 microsat,130 simpleRepeat,90 tRNAs,95 xenoRefGene,233 152111 chainBosTau7,718 chainHg19,715 chainMm9,715 chainMonDom5,715 chainNetBosTau7,721 chainNetHg19,718 chainNetMm9,718 chainNetMonDom5,718 netBosTau7,718 netHg19,715 netMm9,715 netMonDom5,715 15600 chainMonDom5,726 chainMonDom5,738 chainNetMonDom5,729 chainNetMonDom5,741 netMonDom5,726 netMonDom5,738 15608248 xenoRefGene,390 16 nestedRepeats,357 nscanGene,267 rmsk,380 16000 chainMonDom5,750 chainNetMonDom5,753 netMonDom5,750 16597247 nscanGene,179 16651666 nscanGene,271 17 cpgIslandExt,241 cpgIslandExtUnmasked,244 cpgIslandSuper,241 nscanGene,243 18218656 augustusGene,315 18522722 numtS,579 numtSAssembled,581 numtSMitochondrion,583 numtSeq2012,582 1870126 tRNAs,439 18984615 tRNAs,391 19 augustusGene,335 nscanGene,220 196 cpgIslandExt,619 cpgIslandExtUnmasked,622 cpgIslandSuper,619 1987 cpgIslandExt,379 cpgIslandExt,616 cpgIslandExtUnmasked,382 cpgIslandExtUnmasked,619 cpgIslandSuper,379 cpgIslandSuper,616 1988 tRNAs,350 1990 blastHg18KG,171 1991 tRNAs,432 1994 tRNAs,407 tRNAs,503 1996 nestedRepeats,410 rmsk,433 1996-2010 nestedRepeats,334 rmsk,357 1997 tRNAs,460 1999 microsat,103 microsat,128 nestedRepeats,388 rmsk,411 simpleRepeat,65 simpleRepeat,88 1e-03 numtS,432 numtSAssembled,434 numtSMitochondrion,436 numtSeq2012,435 2 augustusGene,142 augustusGene,337 chainBosTau7,422 chainBosTau7,427 chainBosTau7,710 chainHg19,419 chainHg19,424 chainHg19,707 chainMm9,419 chainMm9,424 chainMm9,707 chainMonDom5,419 chainMonDom5,424 chainMonDom5,707 chainNetBosTau7,425 chainNetBosTau7,430 chainNetBosTau7,713 chainNetHg19,422 chainNetHg19,427 chainNetHg19,710 chainNetMm9,422 chainNetMm9,427 chainNetMm9,710 chainNetMonDom5,422 chainNetMonDom5,427 chainNetMonDom5,710 cpgIslandExt,421 cpgIslandExt,426 cpgIslandExt,428 cpgIslandExt,434 cpgIslandExt,460 cpgIslandExt,475 cpgIslandExt,620 cpgIslandExtUnmasked,424 cpgIslandExtUnmasked,429 cpgIslandExtUnmasked,431 cpgIslandExtUnmasked,437 cpgIslandExtUnmasked,463 cpgIslandExtUnmasked,478 cpgIslandExtUnmasked,623 cpgIslandSuper,421 cpgIslandSuper,426 cpgIslandSuper,428 cpgIslandSuper,434 cpgIslandSuper,460 cpgIslandSuper,475 cpgIslandSuper,620 microsat,66 microsat,132 netBosTau7,422 netBosTau7,427 netBosTau7,710 netHg19,419 netHg19,424 netHg19,707 netMm9,419 netMm9,424 netMm9,707 netMonDom5,419 netMonDom5,424 netMonDom5,707 nscanGene,176 numtS,278 numtSAssembled,280 numtSMitochondrion,282 numtSeq2012,281 simpleRepeat,92 20 chainBosTau7,1077 chainHg19,1074 chainMm9,1074 chainMonDom5,1074 chainNetBosTau7,1080 chainNetHg19,1077 chainNetMm9,1077 chainNetMonDom5,1077 cpgIslandExt,618 cpgIslandExtUnmasked,621 cpgIslandSuper,618 netBosTau7,1077 netHg19,1074 netMm9,1074 netMonDom5,1074 numtS,611 numtSAssembled,613 numtSMitochondrion,615 numtSeq2012,614 tRNAs,123 200 cpgIslandExt,271 cpgIslandExtUnmasked,274 cpgIslandSuper,271 2000 nestedRepeats,63 nestedRepeats,355 rmsk,99 rmsk,378 2001 nscanGene,242 2002 chainBosTau7,1039 chainHg19,1036 chainMm9,1036 chainMonDom5,1036 chainNetBosTau7,1042 chainNetHg19,1039 chainNetMm9,1039 chainNetMonDom5,1039 ensGene,54 ensGene,205 est,806 intronEst,890 mrna,523 netBosTau7,1039 netHg19,1036 netMm9,1036 netMonDom5,1036 xenoMrna,598 xenoRefGene,308 2003 augustusGene,333 chainBosTau7,1073 chainBosTau7,1105 chainHg19,1070 chainHg19,1102 chainMm9,1070 chainMm9,1102 chainMonDom5,1070 chainMonDom5,1102 chainNetBosTau7,1076 chainNetBosTau7,1108 chainNetHg19,1073 chainNetHg19,1105 chainNetMm9,1073 chainNetMm9,1105 chainNetMonDom5,1073 chainNetMonDom5,1105 netBosTau7,1073 netBosTau7,1105 netHg19,1070 netHg19,1102 netMm9,1070 netMm9,1102 netMonDom5,1070 netMonDom5,1102 nscanGene,216 2004 est,786 intronEst,870 mrna,503 xenoMrna,578 2005 xenoRefGene,382 2006 chainMonDom5,5 chainMonDom5,67 chainMonDom5,301 chainNetMonDom5,6 chainNetMonDom5,70 chainNetMonDom5,304 chainNetMonDom5Viewchain,4 chainNetMonDom5Viewnet,4 netMonDom5,5 netMonDom5,67 netMonDom5,301 nscanGene,173 nscanGene,265 2007 chainBosTau7,1012 chainHg19,1009 chainMm9,5 chainMm9,67 chainMm9,301 chainMm9,1009 chainMonDom5,1009 chainNetBosTau7,1015 chainNetHg19,1012 chainNetMm9,6 chainNetMm9,70 chainNetMm9,304 chainNetMm9,1012 chainNetMm9Viewchain,4 chainNetMm9Viewnet,4 chainNetMonDom5,1012 netBosTau7,1012 netHg19,1009 netMm9,5 netMm9,67 netMm9,301 netMm9,1009 netMonDom5,1009 2008 augustusGene,308 numtS,573 numtSAssembled,575 numtSMitochondrion,577 numtSeq2012,576 2009 chainHg19,5 chainHg19,67 chainHg19,301 chainNetHg19,6 chainNetHg19,70 chainNetHg19,304 chainNetHg19Viewchain,4 chainNetHg19Viewnet,4 gap,17 gold,18 netHg19,5 netHg19,67 netHg19,301 tRNAs,384 2011 chainBosTau7,5 chainBosTau7,68 chainBosTau7,303 chainNetBosTau7,6 chainNetBosTau7,71 chainNetBosTau7,306 chainNetBosTau7Viewchain,4 chainNetBosTau7Viewnet,4 netBosTau7,5 netBosTau7,68 netBosTau7,303 numtS,609 numtSAssembled,611 numtSMitochondrion,613 numtSeq2012,612 2012 numtS,535 numtSAssembled,537 numtSMitochondrion,539 numtSeq2012,538 2013 est,761 intronEst,845 mrna,478 xenoMrna,553 2014 xenoRefGene,349 2079-88 tRNAs,412 2111 chainBosTau7,714 chainHg19,711 chainMm9,711 chainMonDom5,711 chainNetBosTau7,717 chainNetHg19,714 chainNetMm9,714 chainNetMonDom5,714 netBosTau7,714 netHg19,711 netMm9,711 netMonDom5,711 215 blastHg18KG,174 217900 chainBosTau7,730 chainBosTau7,742 chainHg19,727 chainHg19,739 chainMm9,727 chainMm9,739 chainNetBosTau7,733 chainNetBosTau7,745 chainNetHg19,730 chainNetHg19,742 chainNetMm9,730 chainNetMm9,742 netBosTau7,730 netBosTau7,742 netHg19,727 netHg19,739 netMm9,727 netMm9,739 218300 chainBosTau7,754 chainHg19,751 chainMm9,751 chainNetBosTau7,757 chainNetHg19,754 chainNetMm9,754 netBosTau7,754 netHg19,751 netMm9,751 22 tRNAs,410 tRNAs,506 220 tRNAs,435 22013967 numtS,615 numtSAssembled,617 numtSMitochondrion,619 numtSeq2012,618 22536961 numtS,543 numtSAssembled,545 numtSMitochondrion,547 numtSeq2012,546 22900 chainBosTau7,727 chainBosTau7,739 chainHg19,724 chainHg19,736 chainMm9,724 chainMm9,736 chainNetBosTau7,730 chainNetBosTau7,742 chainNetHg19,727 chainNetHg19,739 chainNetMm9,727 chainNetMm9,739 netBosTau7,727 netBosTau7,739 netHg19,724 netHg19,736 netMm9,724 netMm9,736 23193287 est,768 intronEst,852 mrna,485 xenoMrna,560 23300 chainBosTau7,751 chainHg19,748 chainMm9,748 chainNetBosTau7,754 chainNetHg19,751 chainNetMm9,751 netBosTau7,751 netHg19,748 netMm9,748 24 augustusGene,311 24259432 xenoRefGene,356 25 tRNAs,463 xenoMrna,503 xenoRefGene,268 252111 chainBosTau7,719 chainHg19,716 chainMm9,716 chainMonDom5,716 chainNetBosTau7,722 chainNetHg19,719 chainNetMm9,719 chainNetMonDom5,719 netBosTau7,719 netHg19,716 netMm9,716 netMonDom5,716 261-82 cpgIslandExt,621 cpgIslandExtUnmasked,624 cpgIslandSuper,621 267 numtS,577 numtSAssembled,579 numtSMitochondrion,581 numtSeq2012,580 27 microsat,131 simpleRepeat,91 28 numtS,537 numtSAssembled,539 numtSMitochondrion,541 numtSeq2012,540 2900 chainBosTau7,726 chainBosTau7,738 chainHg19,723 chainHg19,735 chainMm9,723 chainMm9,735 chainNetBosTau7,729 chainNetBosTau7,741 chainNetHg19,726 chainNetHg19,738 chainNetMm9,726 chainNetMm9,738 netBosTau7,726 netBosTau7,738 netHg19,723 netHg19,735 netMm9,723 netMm9,735 2n cpgIslandExt,487 cpgIslandExtUnmasked,490 cpgIslandSuper,487 3 augustusGene,140 blastHg18KG,175 chainBosTau7,434 chainBosTau7,711 chainHg19,431 chainHg19,708 chainMm9,431 chainMm9,708 chainMonDom5,431 chainMonDom5,708 chainNetBosTau7,437 chainNetBosTau7,714 chainNetHg19,434 chainNetHg19,711 chainNetMm9,434 chainNetMm9,711 chainNetMonDom5,434 chainNetMonDom5,711 cpgIslandExt,432 cpgIslandExt,462 cpgIslandExtUnmasked,435 cpgIslandExtUnmasked,465 cpgIslandSuper,432 cpgIslandSuper,462 est,478 est,531 est,585 intronEst,112 intronEst,559 intronEst,612 intronEst,666 microsat,68 netBosTau7,434 netBosTau7,711 netHg19,431 netHg19,708 netMm9,431 netMm9,708 netMonDom5,431 netMonDom5,708 numtS,575 numtSAssembled,577 numtSMitochondrion,579 numtSeq2012,578 tRNAs,436 xenoMrna,88 3.1 augustusGene,24 30 chainBosTau7,1075 chainHg19,1072 chainMm9,1072 chainMonDom5,1072 chainNetBosTau7,1078 chainNetHg19,1075 chainNetMm9,1075 chainNetMonDom5,1075 ensGene,208 netBosTau7,1075 netHg19,1072 netMm9,1072 netMonDom5,1072 300 cpgIslandExt,6 cpgIslandExtUnmasked,9 cpgIslandSuper,6 3000 chainBosTau7,683 chainHg19,680 chainMm9,680 chainNetBosTau7,686 chainNetHg19,683 chainNetMm9,683 netBosTau7,683 netHg19,680 netMm9,680 31 nscanGene,219 31600 chainMonDom5,727 chainMonDom5,739 chainNetMonDom5,730 chainNetMonDom5,742 netMonDom5,727 netMonDom5,739 317900 chainBosTau7,731 chainBosTau7,743 chainHg19,728 chainHg19,740 chainMm9,728 chainMm9,740 chainNetBosTau7,734 chainNetBosTau7,746 chainNetHg19,731 chainNetHg19,743 chainNetMm9,731 chainNetMm9,743 netBosTau7,731 netBosTau7,743 netHg19,728 netHg19,740 netMm9,728 netMm9,740 318300 chainBosTau7,755 chainHg19,752 chainMm9,752 chainNetBosTau7,758 chainNetHg19,755 chainNetMm9,755 netBosTau7,755 netHg19,752 netMm9,752 32 est,789 intronEst,82 intronEst,873 mrna,506 xenoMrna,581 32000 chainMonDom5,751 chainNetMonDom5,754 netMonDom5,751 32111 chainBosTau7,716 chainHg19,713 chainMm9,713 chainMonDom5,713 chainNetBosTau7,719 chainNetHg19,716 chainNetMm9,716 chainNetMonDom5,716 netBosTau7,716 netHg19,713 netMm9,713 netMonDom5,713 325 chainMonDom5,718 chainMonDom5,730 chainNetMonDom5,721 chainNetMonDom5,733 netMonDom5,718 netMonDom5,730 33 xenoRefGene,385 3300 chainBosTau7,750 chainHg19,747 chainMm9,747 chainNetBosTau7,753 chainNetHg19,750 chainNetMm9,750 netBosTau7,750 netHg19,747 netMm9,747 350 chainBosTau7,721 chainBosTau7,733 chainHg19,718 chainHg19,730 chainMm9,718 chainMm9,730 chainNetBosTau7,724 chainNetBosTau7,736 chainNetHg19,721 chainNetHg19,733 chainNetMm9,721 chainNetMm9,733 netBosTau7,721 netBosTau7,733 netHg19,718 netHg19,730 netMm9,718 netMm9,730 360 chainMonDom5,719 chainMonDom5,731 chainNetMonDom5,722 chainNetMonDom5,734 netMonDom5,719 netMonDom5,731 3600 chainMonDom5,724 chainMonDom5,736 chainNetMonDom5,727 chainNetMonDom5,739 netMonDom5,724 netMonDom5,736 3656447 cpgIslandExt,623 cpgIslandExtUnmasked,626 cpgIslandSuper,623 37 tRNAs,386 379-93 nscanGene,177 38-41 ensGene,210 39s ensGene,170 4 est,809 intronEst,893 mrna,526 numtS,540 numtSAssembled,542 numtSMitochondrion,544 numtSeq2012,543 xenoMrna,601 xenoRefGene,311 400 chainMonDom5,720 chainMonDom5,732 chainNetMonDom5,723 chainNetMonDom5,735 netMonDom5,720 netMonDom5,732 4000 chainMonDom5,748 chainNetMonDom5,751 netMonDom5,748 403-410 blastHg18KG,176 41 est,763 intronEst,847 mrna,480 xenoMrna,555 418-420 nestedRepeats,359 rmsk,382 42 xenoRefGene,351 425 chainBosTau7,722 chainBosTau7,734 chainHg19,719 chainHg19,731 chainMm9,719 chainMm9,731 chainNetBosTau7,725 chainNetBosTau7,737 chainNetHg19,722 chainNetHg19,734 chainNetMm9,722 chainNetMm9,734 netBosTau7,722 netBosTau7,734 netHg19,719 netHg19,731 netMm9,719 netMm9,731 45 tRNAs,180 45-60 tRNAs,200 450 chainBosTau7,723 chainBosTau7,735 chainHg19,720 chainHg19,732 chainMm9,720 chainMm9,732 chainMonDom5,721 chainMonDom5,733 chainNetBosTau7,726 chainNetBosTau7,738 chainNetHg19,723 chainNetHg19,735 chainNetMm9,723 chainNetMm9,735 chainNetMonDom5,724 chainNetMonDom5,736 netBosTau7,723 netBosTau7,735 netHg19,720 netHg19,732 netMm9,720 netMm9,732 netMonDom5,721 netMonDom5,733 5 augustusGene,312 blastHg18KG,173 cpgIslandExt,464 cpgIslandExtUnmasked,467 cpgIslandSuper,464 est,475 est,516 est,542 gap,125 gap,140 intronEst,556 intronEst,597 intronEst,623 nscanGene,268 tRNAs,434 tRNAs,464 xenoMrna,86 5-base gc5Base,6 gc5Base,27 50 cpgIslandExt,265 cpgIslandExtUnmasked,268 cpgIslandSuper,265 nestedRepeats,229 500 est,32 intronEst,44 5000 chainMonDom5,680 chainNetMonDom5,683 netMonDom5,680 517 numtS,613 numtSAssembled,615 numtSMitochondrion,617 numtSeq2012,616 5654-66 nscanGene,221 56600 chainMonDom5,728 chainMonDom5,740 chainNetMonDom5,731 chainNetMonDom5,743 netMonDom5,728 netMonDom5,740 57000 chainMonDom5,752 chainNetMonDom5,755 netMonDom5,752 573-80 microsat,133 simpleRepeat,93 57900 chainBosTau7,728 chainBosTau7,740 chainHg19,725 chainHg19,737 chainMm9,725 chainMm9,737 chainNetBosTau7,731 chainNetBosTau7,743 chainNetHg19,728 chainNetHg19,740 chainNetMm9,728 chainNetMm9,740 netBosTau7,728 netBosTau7,740 netHg19,725 netHg19,737 netMm9,725 netMm9,737 58300 chainBosTau7,752 chainHg19,749 chainMm9,749 chainNetBosTau7,755 chainNetHg19,752 chainNetMm9,752 netBosTau7,752 netHg19,749 netMm9,749 6 cpgIslandExt,466 cpgIslandExt,469 cpgIslandExt,477 cpgIslandExtUnmasked,469 cpgIslandExtUnmasked,472 cpgIslandExtUnmasked,480 cpgIslandSuper,466 cpgIslandSuper,469 cpgIslandSuper,477 nestedRepeats,391 nestedRepeats,412 nestedRepeats,413 rmsk,414 rmsk,435 rmsk,436 60 blastHg18KG,107 blastHg18KG,119 blastHg18KG,127 60.0 tRNAs,166 600 chainBosTau7,724 chainBosTau7,736 chainHg19,721 chainHg19,733 chainMm9,721 chainMm9,733 chainMonDom5,722 chainMonDom5,734 chainNetBosTau7,727 chainNetBosTau7,739 chainNetHg19,724 chainNetHg19,736 chainNetMm9,724 chainNetMm9,736 chainNetMonDom5,725 chainNetMonDom5,737 netBosTau7,724 netBosTau7,736 netHg19,721 netHg19,733 netMm9,721 netMm9,733 netMonDom5,722 netMonDom5,734 625 chainMonDom5,742 chainNetMonDom5,745 netMonDom5,742 637-44 augustusGene,313 656-64 est,810 intronEst,894 mrna,527 xenoMrna,602 xenoRefGene,312 657-63 nestedRepeats,392 rmsk,415 659-71 tRNAs,437 660 chainMonDom5,743 chainNetMonDom5,746 netMonDom5,743 678-85 nscanGene,269 7 cpgIslandExt,472 cpgIslandExt,480 cpgIslandExtUnmasked,475 cpgIslandExtUnmasked,483 cpgIslandSuper,472 cpgIslandSuper,480 tRNAs,507 700 chainMonDom5,744 chainNetMonDom5,747 netMonDom5,744 72111 chainBosTau7,717 chainHg19,714 chainMm9,714 chainMonDom5,714 chainNetBosTau7,720 chainNetHg19,717 chainNetMm9,717 chainNetMonDom5,717 netBosTau7,717 netHg19,714 netMm9,714 netMonDom5,714 743-8 nestedRepeats,414 rmsk,437 750 chainBosTau7,745 chainHg19,742 chainMm9,742 chainMonDom5,745 chainNetBosTau7,748 chainNetHg19,745 chainNetMm9,745 chainNetMonDom5,748 est,664 intronEst,745 netBosTau7,745 netHg19,742 netMm9,742 netMonDom5,745 7600 chainMonDom5,725 chainMonDom5,737 chainNetMonDom5,728 chainNetMonDom5,740 netMonDom5,725 netMonDom5,737 8000 chainMonDom5,749 chainNetMonDom5,752 netMonDom5,749 8029015 tRNAs,414 8165140 tRNAs,510 825 chainBosTau7,746 chainHg19,743 chainMm9,743 chainNetBosTau7,749 chainNetHg19,746 chainNetMm9,746 netBosTau7,746 netHg19,743 netMm9,743 850 chainBosTau7,747 chainHg19,744 chainMm9,744 chainNetBosTau7,750 chainNetHg19,747 chainNetMm9,747 netBosTau7,747 netHg19,744 netMm9,744 8994846 nestedRepeats,416 rmsk,439 9 cpgIslandExt,482 cpgIslandExtUnmasked,485 cpgIslandSuper,482 nestedRepeats,358 nestedRepeats,390 numtS,576 numtSAssembled,578 numtSMitochondrion,580 numtSeq2012,579 rmsk,381 rmsk,413 900 chainBosTau7,725 chainBosTau7,737 chainHg19,722 chainHg19,734 chainMm9,722 chainMm9,734 chainMonDom5,746 chainNetBosTau7,728 chainNetBosTau7,740 chainNetHg19,725 chainNetHg19,737 chainNetMm9,725 chainNetMm9,737 chainNetMonDom5,749 netBosTau7,725 netBosTau7,737 netHg19,722 netHg19,734 netMm9,722 netMm9,734 netMonDom5,746 9023104 tRNAs,467 955-64 tRNAs,465 96 est,712 intronEst,793 mrna,428 9862982 microsat,135 simpleRepeat,95 99-100 tRNAs,81 a augustusGene,116 augustusGene,128 augustusGene,152 augustusGene,215 augustusGene,218 augustusGene,233 augustusGene,323 augustusGene,328 chainBosTau7,77 chainBosTau7,146 chainBosTau7,198 chainBosTau7,454 chainBosTau7,464 chainBosTau7,468 chainBosTau7,535 chainBosTau7,552 chainBosTau7,555 chainBosTau7,621 chainBosTau7,626 chainBosTau7,631 chainBosTau7,635 chainBosTau7,646 chainBosTau7,678 chainBosTau7,797 chainBosTau7,811 chainBosTau7,817 chainBosTau7,823 chainBosTau7,827 chainBosTau7,830 chainBosTau7,858 chainBosTau7,1048 chainBosTau7,1072 chainBosTau7,1088 chainHg19,75 chainHg19,144 chainHg19,196 chainHg19,451 chainHg19,461 chainHg19,465 chainHg19,532 chainHg19,549 chainHg19,552 chainHg19,618 chainHg19,623 chainHg19,628 chainHg19,632 chainHg19,643 chainHg19,675 chainHg19,794 chainHg19,808 chainHg19,814 chainHg19,820 chainHg19,824 chainHg19,827 chainHg19,855 chainHg19,1045 chainHg19,1069 chainHg19,1085 chainMm9,75 chainMm9,144 chainMm9,196 chainMm9,451 chainMm9,461 chainMm9,465 chainMm9,532 chainMm9,549 chainMm9,552 chainMm9,618 chainMm9,623 chainMm9,628 chainMm9,632 chainMm9,643 chainMm9,675 chainMm9,794 chainMm9,808 chainMm9,814 chainMm9,820 chainMm9,824 chainMm9,827 chainMm9,855 chainMm9,1045 chainMm9,1069 chainMm9,1085 chainMonDom5,75 chainMonDom5,144 chainMonDom5,196 chainMonDom5,451 chainMonDom5,461 chainMonDom5,465 chainMonDom5,532 chainMonDom5,549 chainMonDom5,552 chainMonDom5,618 chainMonDom5,623 chainMonDom5,628 chainMonDom5,632 chainMonDom5,643 chainMonDom5,675 chainMonDom5,794 chainMonDom5,808 chainMonDom5,814 chainMonDom5,820 chainMonDom5,824 chainMonDom5,827 chainMonDom5,855 chainMonDom5,1045 chainMonDom5,1069 chainMonDom5,1085 chainNetBosTau7,80 chainNetBosTau7,149 chainNetBosTau7,201 chainNetBosTau7,457 chainNetBosTau7,467 chainNetBosTau7,471 chainNetBosTau7,538 chainNetBosTau7,555 chainNetBosTau7,558 chainNetBosTau7,624 chainNetBosTau7,629 chainNetBosTau7,634 chainNetBosTau7,638 chainNetBosTau7,649 chainNetBosTau7,681 chainNetBosTau7,800 chainNetBosTau7,814 chainNetBosTau7,820 chainNetBosTau7,826 chainNetBosTau7,830 chainNetBosTau7,833 chainNetBosTau7,861 chainNetBosTau7,1051 chainNetBosTau7,1075 chainNetBosTau7,1091 chainNetHg19,78 chainNetHg19,147 chainNetHg19,199 chainNetHg19,454 chainNetHg19,464 chainNetHg19,468 chainNetHg19,535 chainNetHg19,552 chainNetHg19,555 chainNetHg19,621 chainNetHg19,626 chainNetHg19,631 chainNetHg19,635 chainNetHg19,646 chainNetHg19,678 chainNetHg19,797 chainNetHg19,811 chainNetHg19,817 chainNetHg19,823 chainNetHg19,827 chainNetHg19,830 chainNetHg19,858 chainNetHg19,1048 chainNetHg19,1072 chainNetHg19,1088 chainNetMm9,78 chainNetMm9,147 chainNetMm9,199 chainNetMm9,454 chainNetMm9,464 chainNetMm9,468 chainNetMm9,535 chainNetMm9,552 chainNetMm9,555 chainNetMm9,621 chainNetMm9,626 chainNetMm9,631 chainNetMm9,635 chainNetMm9,646 chainNetMm9,678 chainNetMm9,797 chainNetMm9,811 chainNetMm9,817 chainNetMm9,823 chainNetMm9,827 chainNetMm9,830 chainNetMm9,858 chainNetMm9,1048 chainNetMm9,1072 chainNetMm9,1088 chainNetMonDom5,78 chainNetMonDom5,147 chainNetMonDom5,199 chainNetMonDom5,454 chainNetMonDom5,464 chainNetMonDom5,468 chainNetMonDom5,535 chainNetMonDom5,552 chainNetMonDom5,555 chainNetMonDom5,621 chainNetMonDom5,626 chainNetMonDom5,631 chainNetMonDom5,635 chainNetMonDom5,646 chainNetMonDom5,678 chainNetMonDom5,797 chainNetMonDom5,811 chainNetMonDom5,817 chainNetMonDom5,823 chainNetMonDom5,827 chainNetMonDom5,830 chainNetMonDom5,858 chainNetMonDom5,1048 chainNetMonDom5,1072 chainNetMonDom5,1088 cpgIslandExt,43 cpgIslandExt,50 cpgIslandExt,54 cpgIslandExt,128 cpgIslandExt,166 cpgIslandExt,236 cpgIslandExt,590 cpgIslandExt,593 cpgIslandExtUnmasked,46 cpgIslandExtUnmasked,53 cpgIslandExtUnmasked,57 cpgIslandExtUnmasked,131 cpgIslandExtUnmasked,169 cpgIslandExtUnmasked,239 cpgIslandExtUnmasked,593 cpgIslandExtUnmasked,596 cpgIslandSuper,43 cpgIslandSuper,50 cpgIslandSuper,54 cpgIslandSuper,128 cpgIslandSuper,166 cpgIslandSuper,236 cpgIslandSuper,590 cpgIslandSuper,593 ctgPos2,32 ensGene,38 est,115 est,132 est,167 est,193 est,266 est,385 est,465 est,469 est,595 est,621 est,629 est,681 est,700 gap,80 gap,84 gc5Base,44 gold,34 gold,107 gold,111 gold,131 intronEst,115 intronEst,148 intronEst,196 intronEst,213 intronEst,248 intronEst,274 intronEst,347 intronEst,466 intronEst,546 intronEst,550 intronEst,676 intronEst,702 intronEst,710 intronEst,762 intronEst,781 microsat,53 microsat,119 mrna,61 mrna,78 mrna,113 mrna,139 mrna,212 mrna,331 mrna,397 mrna,416 nestedRepeats,177 nestedRepeats,226 nestedRepeats,344 nestedRepeats,363 netBosTau7,77 netBosTau7,146 netBosTau7,198 netBosTau7,454 netBosTau7,464 netBosTau7,468 netBosTau7,535 netBosTau7,552 netBosTau7,555 netBosTau7,621 netBosTau7,626 netBosTau7,631 netBosTau7,635 netBosTau7,646 netBosTau7,678 netBosTau7,797 netBosTau7,811 netBosTau7,817 netBosTau7,823 netBosTau7,827 netBosTau7,830 netBosTau7,858 netBosTau7,1048 netBosTau7,1072 netBosTau7,1088 netHg19,75 netHg19,144 netHg19,196 netHg19,451 netHg19,461 netHg19,465 netHg19,532 netHg19,549 netHg19,552 netHg19,618 netHg19,623 netHg19,628 netHg19,632 netHg19,643 netHg19,675 netHg19,794 netHg19,808 netHg19,814 netHg19,820 netHg19,824 netHg19,827 netHg19,855 netHg19,1045 netHg19,1069 netHg19,1085 netMm9,75 netMm9,144 netMm9,196 netMm9,451 netMm9,461 netMm9,465 netMm9,532 netMm9,549 netMm9,552 netMm9,618 netMm9,623 netMm9,628 netMm9,632 netMm9,643 netMm9,675 netMm9,794 netMm9,808 netMm9,814 netMm9,820 netMm9,824 netMm9,827 netMm9,855 netMm9,1045 netMm9,1069 netMm9,1085 netMonDom5,75 netMonDom5,144 netMonDom5,196 netMonDom5,451 netMonDom5,461 netMonDom5,465 netMonDom5,532 netMonDom5,549 netMonDom5,552 netMonDom5,618 netMonDom5,623 netMonDom5,628 netMonDom5,632 netMonDom5,643 netMonDom5,675 netMonDom5,794 netMonDom5,808 netMonDom5,814 netMonDom5,820 netMonDom5,824 netMonDom5,827 netMonDom5,855 netMonDom5,1045 netMonDom5,1069 netMonDom5,1085 nscanGene,50 numtS,70 numtS,222 numtS,298 numtS,353 numtSAssembled,72 numtSAssembled,224 numtSAssembled,300 numtSAssembled,355 numtSMitochondrion,74 numtSMitochondrion,226 numtSMitochondrion,302 numtSMitochondrion,357 numtSeq2012,73 numtSeq2012,225 numtSeq2012,301 numtSeq2012,356 rmsk,36 rmsk,56 rmsk,226 rmsk,240 rmsk,367 rmsk,386 simpleRepeat,79 tRNAs,35 tRNAs,59 tRNAs,68 tRNAs,86 tRNAs,120 tRNAs,131 tRNAs,144 tRNAs,253 tRNAs,310 tRNAs,371 tRNAs,445 tRNAs,471 tRNAs,475 tRNAs,491 xenoMrna,107 xenoMrna,136 xenoMrna,153 xenoMrna,188 xenoMrna,214 xenoMrna,287 xenoMrna,406 xenoMrna,471 xenoMrna,491 xenoRefGene,237 xenoRefGene,256 xenoRefGene,326 xenoRefGene,369 a91-114-31-123 chainBosTau7,671 chainHg19,668 chainMm9,668 chainMonDom5,668 chainNetBosTau7,674 chainNetHg19,671 chainNetMm9,671 chainNetMonDom5,671 netBosTau7,671 netHg19,668 netMm9,668 netMonDom5,668 aaron nscanGene,140 ab augustusGene,3 augustusGene,16 abbreviated chainBosTau7,584 chainHg19,581 chainMm9,581 chainMonDom5,581 chainNetBosTau7,587 chainNetHg19,584 chainNetMm9,584 chainNetMonDom5,584 netBosTau7,584 netHg19,581 netMm9,581 netMonDom5,581 about chainBosTau7,460 chainBosTau7,473 chainBosTau7,847 chainHg19,457 chainHg19,470 chainHg19,844 chainMm9,457 chainMm9,470 chainMm9,844 chainMonDom5,457 chainMonDom5,470 chainMonDom5,844 chainNetBosTau7,463 chainNetBosTau7,476 chainNetBosTau7,850 chainNetHg19,460 chainNetHg19,473 chainNetHg19,847 chainNetMm9,460 chainNetMm9,473 chainNetMm9,847 chainNetMonDom5,460 chainNetMonDom5,473 chainNetMonDom5,847 est,31 est,411 intronEst,43 intronEst,492 microsat,98 mrna,348 netBosTau7,460 netBosTau7,473 netBosTau7,847 netHg19,457 netHg19,470 netHg19,844 netMm9,457 netMm9,470 netMm9,844 netMonDom5,457 netMonDom5,470 netMonDom5,844 simpleRepeat,59 xenoMrna,423 xenoRefGene,176 above chainBosTau7,532 chainBosTau7,544 chainBosTau7,564 chainHg19,529 chainHg19,541 chainHg19,561 chainMm9,529 chainMm9,541 chainMm9,561 chainMonDom5,529 chainMonDom5,541 chainMonDom5,561 chainNetBosTau7,535 chainNetBosTau7,547 chainNetBosTau7,567 chainNetHg19,532 chainNetHg19,544 chainNetHg19,564 chainNetMm9,532 chainNetMm9,544 chainNetMm9,564 chainNetMonDom5,532 chainNetMonDom5,544 chainNetMonDom5,564 nestedRepeats,218 netBosTau7,532 netBosTau7,544 netBosTau7,564 netHg19,529 netHg19,541 netHg19,561 netMm9,529 netMm9,541 netMm9,561 netMonDom5,529 netMonDom5,541 netMonDom5,561 tRNAs,122 abundance chainBosTau7,180 chainHg19,178 chainMm9,178 chainMonDom5,178 chainNetBosTau7,183 chainNetHg19,181 chainNetMm9,181 chainNetMonDom5,181 netBosTau7,180 netHg19,178 netMm9,178 netMonDom5,178 ac numtS,425 numtSAssembled,427 numtSMitochondrion,429 numtSeq2012,428 acad chainBosTau7,1068 chainHg19,1065 chainMm9,1065 chainMonDom5,1065 chainNetBosTau7,1071 chainNetHg19,1068 chainNetMm9,1068 chainNetMonDom5,1068 netBosTau7,1068 netHg19,1065 netMm9,1065 netMonDom5,1065 access cpgIslandExt,505 cpgIslandExtUnmasked,508 cpgIslandSuper,505 ensGene,63 ensGene,107 numtS,116 numtSAssembled,118 numtSMitochondrion,120 numtSeq2012,119 accession xenoRefGene,116 xenoRefGene,128 according augustusGene,114 cpgIslandExt,370 cpgIslandExtUnmasked,373 cpgIslandSuper,370 nestedRepeats,183 accordingly tRNAs,281 acgt chainBosTau7,670 chainHg19,667 chainMm9,667 chainMonDom5,667 chainNetBosTau7,673 chainNetHg19,670 chainNetMm9,670 chainNetMonDom5,670 netBosTau7,670 netHg19,667 netMm9,667 netMonDom5,667 acid blastHg18KG,63 acids blastHg18KG,133 ensGene,203 est,759 est,784 intronEst,843 intronEst,868 microsat,126 mrna,476 mrna,501 nscanGene,214 simpleRepeat,86 tRNAs,382 tRNAs,405 tRNAs,458 tRNAs,501 xenoMrna,551 xenoMrna,576 xenoRefGene,347 xenoRefGene,380 active ctgPos2,34 gold,133 added chainBosTau7,594 chainHg19,591 chainMm9,591 chainMonDom5,591 chainNetBosTau7,597 chainNetHg19,594 chainNetMm9,594 chainNetMonDom5,594 nestedRepeats,147 netBosTau7,594 netHg19,591 netMm9,591 netMonDom5,591 additional nestedRepeats,288 rmsk,295 admin cpgIslandExt,577 cpgIslandExtUnmasked,580 cpgIslandSuper,577 advice chainBosTau7,933 chainBosTau7,965 chainHg19,930 chainHg19,962 chainMm9,930 chainMm9,962 chainMonDom5,930 chainMonDom5,962 chainNetBosTau7,936 chainNetBosTau7,968 chainNetHg19,933 chainNetHg19,965 chainNetMm9,933 chainNetMm9,965 chainNetMonDom5,933 chainNetMonDom5,965 netBosTau7,933 netBosTau7,965 netHg19,930 netHg19,962 netMm9,930 netMm9,962 netMonDom5,930 netMonDom5,962 af nestedRepeats,372 nestedRepeats,396 rmsk,395 rmsk,419 afa nestedRepeats,325 rmsk,348 affine chainBosTau7,87 chainHg19,85 chainMm9,85 chainMonDom5,85 chainNetBosTau7,90 chainNetHg19,88 chainNetMm9,88 chainNetMonDom5,88 netBosTau7,87 netHg19,85 netMm9,85 netMonDom5,85 after chainBosTau7,905 chainHg19,902 chainMm9,902 chainMonDom5,902 chainNetBosTau7,908 chainNetHg19,905 chainNetMm9,905 chainNetMonDom5,905 cpgIslandExt,94 cpgIslandExt,326 cpgIslandExtUnmasked,97 cpgIslandExtUnmasked,329 cpgIslandSuper,94 cpgIslandSuper,326 netBosTau7,905 netHg19,902 netMm9,902 netMonDom5,902 ag intronEst,89 against est,649 intronEst,35 intronEst,730 mrna,341 mrna,389 xenoMrna,416 xenoMrna,463 xenoRefGene,220 agents numtS,36 numtSAssembled,38 numtSMitochondrion,40 numtSeq2012,39 agp ctgPos2,20 ctgPos2,53 gap,160 gap,167 gold,147 agp.gz ctgPos2,23 aids cpgIslandExt,86 cpgIslandExtUnmasked,89 cpgIslandSuper,86 al cpgIslandExt,378 cpgIslandExtUnmasked,381 cpgIslandSuper,378 ensGene,53 ensGene,196 nscanGene,183 nscanGene,202 xenoRefGene,338 algorithm augustusGene,130 tRNAs,40 align chainBosTau7,196 chainHg19,194 chainMm9,194 chainMonDom5,194 chainNetBosTau7,199 chainNetHg19,197 chainNetMm9,197 chainNetMonDom5,197 est,679 intronEst,760 netBosTau7,196 netHg19,194 netMm9,194 netMonDom5,194 alignable chainBosTau7,23 chainBosTau7,39 chainHg19,22 chainHg19,38 chainMm9,22 chainMm9,38 chainMonDom5,22 chainMonDom5,38 chainNetBosTau7,26 chainNetBosTau7,42 chainNetHg19,25 chainNetHg19,41 chainNetMm9,25 chainNetMm9,41 chainNetMonDom5,25 chainNetMonDom5,41 netBosTau7,23 netBosTau7,39 netHg19,22 netHg19,38 netMm9,22 netMm9,38 netMonDom5,22 netMonDom5,38 aligned blastHg18KG,47 blastHg18KG,71 chainBosTau7,587 chainHg19,584 chainMm9,584 chainMonDom5,584 chainNetBosTau7,590 chainNetHg19,587 chainNetMm9,587 chainNetMonDom5,587 est,648 est,684 intronEst,34 intronEst,152 intronEst,729 intronEst,765 mrna,388 mrna,400 netBosTau7,587 netHg19,584 netMm9,584 netMonDom5,584 nscanGene,90 xenoMrna,462 xenoMrna,474 xenoRefGene,219 xenoRefGene,240 aligning chainBosTau7,135 chainBosTau7,332 chainBosTau7,362 chainHg19,133 chainHg19,329 chainHg19,359 chainMm9,133 chainMm9,329 chainMm9,359 chainMonDom5,133 chainMonDom5,329 chainMonDom5,359 chainNetBosTau7,138 chainNetBosTau7,335 chainNetBosTau7,365 chainNetHg19,136 chainNetHg19,332 chainNetHg19,362 chainNetMm9,136 chainNetMm9,332 chainNetMm9,362 chainNetMonDom5,136 chainNetMonDom5,332 chainNetMonDom5,362 est,397 intronEst,478 netBosTau7,135 netBosTau7,332 netBosTau7,362 netHg19,133 netHg19,329 netHg19,359 netMm9,133 netMm9,329 netMm9,359 netMonDom5,133 netMonDom5,329 netMonDom5,359 numtS,157 numtSAssembled,159 numtSMitochondrion,161 numtSeq2012,160 alignment blastHg18KG,165 chainBosTau7,259 chainBosTau7,1015 chainHg19,257 chainHg19,1012 chainMm9,257 chainMm9,1012 chainMonDom5,257 chainMonDom5,1012 chainNetBosTau7,262 chainNetBosTau7,1018 chainNetHg19,260 chainNetHg19,1015 chainNetMm9,260 chainNetMm9,1015 chainNetMonDom5,260 chainNetMonDom5,1015 est,55 est,420 est,426 est,438 est,689 est,802 intronEst,76 intronEst,139 intronEst,501 intronEst,507 intronEst,519 intronEst,770 intronEst,886 mrna,36 mrna,359 mrna,365 mrna,377 mrna,405 mrna,519 netBosTau7,9 netBosTau7,259 netBosTau7,1015 netHg19,8 netHg19,257 netHg19,1012 netMm9,8 netMm9,257 netMm9,1012 netMonDom5,8 netMonDom5,257 netMonDom5,1012 nscanGene,52 nscanGene,211 numtS,218 numtS,350 numtSAssembled,220 numtSAssembled,352 numtSMitochondrion,222 numtSMitochondrion,354 numtSeq2012,221 numtSeq2012,353 xenoMrna,41 xenoMrna,434 xenoMrna,440 xenoMrna,452 xenoMrna,479 xenoMrna,594 xenoRefGene,229 xenoRefGene,245 xenoRefGene,304 alignments augustusGene,300 blastHg18KG,18 chainBosTau7,10 chainBosTau7,64 chainBosTau7,447 chainBosTau7,599 chainBosTau7,611 chainBosTau7,619 chainBosTau7,645 chainBosTau7,763 chainBosTau7,1035 chainBosTau7,1100 chainHg19,9 chainHg19,63 chainHg19,444 chainHg19,596 chainHg19,608 chainHg19,616 chainHg19,642 chainHg19,760 chainHg19,1032 chainHg19,1097 chainMm9,9 chainMm9,63 chainMm9,444 chainMm9,596 chainMm9,608 chainMm9,616 chainMm9,642 chainMm9,760 chainMm9,1032 chainMm9,1097 chainMonDom5,9 chainMonDom5,63 chainMonDom5,444 chainMonDom5,596 chainMonDom5,608 chainMonDom5,616 chainMonDom5,642 chainMonDom5,760 chainMonDom5,1032 chainMonDom5,1097 chainNetBosTau7,13 chainNetBosTau7,67 chainNetBosTau7,450 chainNetBosTau7,602 chainNetBosTau7,614 chainNetBosTau7,622 chainNetBosTau7,648 chainNetBosTau7,766 chainNetBosTau7,1038 chainNetBosTau7,1103 chainNetBosTau7Viewchain,11 chainNetBosTau7Viewnet,11 chainNetHg19,12 chainNetHg19,66 chainNetHg19,447 chainNetHg19,599 chainNetHg19,611 chainNetHg19,619 chainNetHg19,645 chainNetHg19,763 chainNetHg19,1035 chainNetHg19,1100 chainNetHg19Viewchain,10 chainNetHg19Viewnet,10 chainNetMm9,12 chainNetMm9,66 chainNetMm9,447 chainNetMm9,599 chainNetMm9,611 chainNetMm9,619 chainNetMm9,645 chainNetMm9,763 chainNetMm9,1035 chainNetMm9,1100 chainNetMm9Viewchain,10 chainNetMm9Viewnet,10 chainNetMonDom5,12 chainNetMonDom5,66 chainNetMonDom5,447 chainNetMonDom5,599 chainNetMonDom5,611 chainNetMonDom5,619 chainNetMonDom5,645 chainNetMonDom5,763 chainNetMonDom5,1035 chainNetMonDom5,1100 chainNetMonDom5Viewchain,10 chainNetMonDom5Viewnet,10 est,14 est,698 intronEst,16 intronEst,779 mrna,15 mrna,414 netBosTau7,64 netBosTau7,447 netBosTau7,599 netBosTau7,611 netBosTau7,619 netBosTau7,645 netBosTau7,763 netBosTau7,1035 netBosTau7,1100 netHg19,63 netHg19,444 netHg19,596 netHg19,608 netHg19,616 netHg19,642 netHg19,760 netHg19,1032 netHg19,1097 netMm9,63 netMm9,444 netMm9,596 netMm9,608 netMm9,616 netMm9,642 netMm9,760 netMm9,1032 netMm9,1097 netMonDom5,63 netMonDom5,444 netMonDom5,596 netMonDom5,608 netMonDom5,616 netMonDom5,642 netMonDom5,760 netMonDom5,1032 netMonDom5,1097 nscanGene,165 numtS,266 numtSAssembled,268 numtSMitochondrion,270 numtSeq2012,269 rmsk,306 tRNAs,241 xenoMrna,16 xenoMrna,489 xenoRefGene,254 all augustusGene,207 chainBosTau7,618 chainHg19,615 chainMm9,615 chainMonDom5,615 chainNetBosTau7,621 chainNetHg19,618 chainNetMm9,618 chainNetMonDom5,618 cpgIslandExt,327 cpgIslandExt,527 cpgIslandExtUnmasked,6 cpgIslandExtUnmasked,330 cpgIslandExtUnmasked,530 cpgIslandSuper,327 cpgIslandSuper,527 est,189 est,243 est,298 est,393 est,485 intronEst,118 intronEst,270 intronEst,324 intronEst,379 intronEst,474 intronEst,566 mrna,135 mrna,189 mrna,244 nestedRepeats,138 nestedRepeats,170 netBosTau7,618 netHg19,615 netMm9,615 netMonDom5,615 rmsk,65 tRNAs,215 xenoMrna,210 xenoMrna,264 xenoMrna,319 allow nscanGene,67 numtS,111 numtSAssembled,113 numtSMitochondrion,115 numtSeq2012,114 allowed est,660 intronEst,741 allowing numtS,232 numtSAssembled,234 numtSMitochondrion,236 numtSeq2012,235 allows augustusGene,168 chainBosTau7,82 chainHg19,80 chainMm9,80 chainMonDom5,80 chainNetBosTau7,85 chainNetHg19,83 chainNetMm9,83 chainNetMonDom5,83 est,388 intronEst,469 mrna,334 netBosTau7,82 netHg19,80 netMm9,80 netMonDom5,80 xenoMrna,409 xenoRefGene,147 alone augustusGene,33 along nscanGene,46 already chainBosTau7,808 chainHg19,805 chainMm9,805 chainMonDom5,805 chainNetBosTau7,811 chainNetHg19,808 chainNetMm9,808 chainNetMonDom5,808 netBosTau7,808 netHg19,805 netMm9,805 netMonDom5,805 also blastHg18KG,135 chainBosTau7,93 chainHg19,91 chainMm9,91 chainMonDom5,91 chainNetBosTau7,96 chainNetHg19,94 chainNetMm9,94 chainNetMonDom5,94 cpgIslandExt,531 cpgIslandExtUnmasked,534 cpgIslandSuper,531 ctgPos2,52 ensGene,55 est,270 est,378 est,429 est,598 gap,166 gold,49 gold,146 intronEst,351 intronEst,459 intronEst,510 intronEst,679 mrna,216 mrna,324 mrna,368 netBosTau7,93 netHg19,91 netMm9,91 netMonDom5,91 numtS,60 numtSAssembled,62 numtSMitochondrion,64 numtSeq2012,63 xenoMrna,291 xenoMrna,399 xenoMrna,443 alter est,126 intronEst,207 mrna,72 xenoMrna,147 alternating gold,78 alternative augustusGene,122 alternatives-from-sampling augustusGene,131 although numtS,57 numtSAssembled,59 numtSMitochondrion,61 numtSeq2012,60 tRNAs,133 altschul blastHg18KG,153 alus rmsk,160 always xenoMrna,85 amino blastHg18KG,62 blastHg18KG,132 amount rmsk,215 an blastHg18KG,89 chainBosTau7,153 chainBosTau7,179 chainBosTau7,185 chainHg19,151 chainHg19,177 chainHg19,183 chainMm9,151 chainMm9,177 chainMm9,183 chainMonDom5,151 chainMonDom5,177 chainMonDom5,183 chainNetBosTau7,156 chainNetBosTau7,182 chainNetBosTau7,188 chainNetHg19,154 chainNetHg19,180 chainNetHg19,186 chainNetMm9,154 chainNetMm9,180 chainNetMm9,186 chainNetMonDom5,154 chainNetMonDom5,180 chainNetMonDom5,186 cpgIslandExt,66 cpgIslandExtUnmasked,69 cpgIslandSuper,66 est,447 est,494 est,577 gc5Base,65 intronEst,59 intronEst,528 intronEst,575 intronEst,658 nestedRepeats,196 nestedRepeats,347 netBosTau7,153 netBosTau7,179 netBosTau7,185 netHg19,151 netHg19,177 netHg19,183 netMm9,151 netMm9,177 netMm9,183 netMonDom5,151 netMonDom5,177 netMonDom5,183 nscanGene,69 rmsk,370 tRNAs,26 tRNAs,34 tRNAs,46 xenoRefGene,141 xenoRefGene,228 xenoRefGene,340 analyses numtS,124 numtSAssembled,126 numtSMitochondrion,128 numtSeq2012,127 analysis tRNAs,400 tRNAs,495 analyze microsat,122 simpleRepeat,82 anchor gold,40 and augustusGene,9 augustusGene,60 augustusGene,74 augustusGene,87 augustusGene,206 augustusGene,271 augustusGene,277 augustusGene,296 augustusGene,327 bamAllNumtSSorted,9 blastHg18KG,10 blastHg18KG,25 blastHg18KG,123 chainBosTau7,99 chainBosTau7,113 chainBosTau7,227 chainBosTau7,235 chainBosTau7,249 chainBosTau7,287 chainBosTau7,310 chainBosTau7,436 chainBosTau7,590 chainBosTau7,625 chainBosTau7,633 chainBosTau7,774 chainBosTau7,852 chainBosTau7,884 chainBosTau7,895 chainBosTau7,904 chainBosTau7,929 chainBosTau7,944 chainBosTau7,969 chainBosTau7,975 chainBosTau7,981 chainBosTau7,988 chainBosTau7,994 chainBosTau7,1058 chainBosTau7,1063 chainHg19,97 chainHg19,111 chainHg19,225 chainHg19,233 chainHg19,247 chainHg19,285 chainHg19,307 chainHg19,433 chainHg19,587 chainHg19,622 chainHg19,630 chainHg19,771 chainHg19,849 chainHg19,881 chainHg19,892 chainHg19,901 chainHg19,926 chainHg19,941 chainHg19,966 chainHg19,972 chainHg19,978 chainHg19,985 chainHg19,991 chainHg19,1055 chainHg19,1060 chainMm9,97 chainMm9,111 chainMm9,225 chainMm9,233 chainMm9,247 chainMm9,285 chainMm9,307 chainMm9,433 chainMm9,587 chainMm9,622 chainMm9,630 chainMm9,771 chainMm9,849 chainMm9,881 chainMm9,892 chainMm9,901 chainMm9,926 chainMm9,941 chainMm9,966 chainMm9,972 chainMm9,978 chainMm9,985 chainMm9,991 chainMm9,1055 chainMm9,1060 chainMonDom5,97 chainMonDom5,111 chainMonDom5,225 chainMonDom5,233 chainMonDom5,247 chainMonDom5,285 chainMonDom5,307 chainMonDom5,433 chainMonDom5,587 chainMonDom5,622 chainMonDom5,630 chainMonDom5,771 chainMonDom5,849 chainMonDom5,881 chainMonDom5,892 chainMonDom5,901 chainMonDom5,926 chainMonDom5,941 chainMonDom5,966 chainMonDom5,972 chainMonDom5,978 chainMonDom5,985 chainMonDom5,991 chainMonDom5,1055 chainMonDom5,1060 chainNetBosTau7,11 chainNetBosTau7,102 chainNetBosTau7,116 chainNetBosTau7,230 chainNetBosTau7,238 chainNetBosTau7,252 chainNetBosTau7,290 chainNetBosTau7,313 chainNetBosTau7,439 chainNetBosTau7,593 chainNetBosTau7,628 chainNetBosTau7,636 chainNetBosTau7,777 chainNetBosTau7,855 chainNetBosTau7,887 chainNetBosTau7,898 chainNetBosTau7,907 chainNetBosTau7,932 chainNetBosTau7,947 chainNetBosTau7,972 chainNetBosTau7,978 chainNetBosTau7,984 chainNetBosTau7,991 chainNetBosTau7,997 chainNetBosTau7,1061 chainNetBosTau7,1066 chainNetBosTau7Viewchain,9 chainNetBosTau7Viewnet,9 chainNetHg19,10 chainNetHg19,100 chainNetHg19,114 chainNetHg19,228 chainNetHg19,236 chainNetHg19,250 chainNetHg19,288 chainNetHg19,310 chainNetHg19,436 chainNetHg19,590 chainNetHg19,625 chainNetHg19,633 chainNetHg19,774 chainNetHg19,852 chainNetHg19,884 chainNetHg19,895 chainNetHg19,904 chainNetHg19,929 chainNetHg19,944 chainNetHg19,969 chainNetHg19,975 chainNetHg19,981 chainNetHg19,988 chainNetHg19,994 chainNetHg19,1058 chainNetHg19,1063 chainNetHg19Viewchain,8 chainNetHg19Viewnet,8 chainNetMm9,10 chainNetMm9,100 chainNetMm9,114 chainNetMm9,228 chainNetMm9,236 chainNetMm9,250 chainNetMm9,288 chainNetMm9,310 chainNetMm9,436 chainNetMm9,590 chainNetMm9,625 chainNetMm9,633 chainNetMm9,774 chainNetMm9,852 chainNetMm9,884 chainNetMm9,895 chainNetMm9,904 chainNetMm9,929 chainNetMm9,944 chainNetMm9,969 chainNetMm9,975 chainNetMm9,981 chainNetMm9,988 chainNetMm9,994 chainNetMm9,1058 chainNetMm9,1063 chainNetMm9Viewchain,8 chainNetMm9Viewnet,8 chainNetMonDom5,10 chainNetMonDom5,100 chainNetMonDom5,114 chainNetMonDom5,228 chainNetMonDom5,236 chainNetMonDom5,250 chainNetMonDom5,288 chainNetMonDom5,310 chainNetMonDom5,436 chainNetMonDom5,590 chainNetMonDom5,625 chainNetMonDom5,633 chainNetMonDom5,774 chainNetMonDom5,852 chainNetMonDom5,884 chainNetMonDom5,895 chainNetMonDom5,904 chainNetMonDom5,929 chainNetMonDom5,944 chainNetMonDom5,969 chainNetMonDom5,975 chainNetMonDom5,981 chainNetMonDom5,988 chainNetMonDom5,994 chainNetMonDom5,1058 chainNetMonDom5,1063 chainNetMonDom5Viewchain,8 chainNetMonDom5Viewnet,8 cpgIslandExt,12 cpgIslandExt,35 cpgIslandExt,183 cpgIslandExt,244 cpgIslandExt,248 cpgIslandExt,295 cpgIslandExt,508 cpgIslandExt,599 cpgIslandExtUnmasked,15 cpgIslandExtUnmasked,38 cpgIslandExtUnmasked,186 cpgIslandExtUnmasked,247 cpgIslandExtUnmasked,251 cpgIslandExtUnmasked,298 cpgIslandExtUnmasked,511 cpgIslandExtUnmasked,602 cpgIslandSuper,12 cpgIslandSuper,35 cpgIslandSuper,183 cpgIslandSuper,244 cpgIslandSuper,248 cpgIslandSuper,295 cpgIslandSuper,508 cpgIslandSuper,599 ctgPos2,5 ensGene,13 ensGene,135 est,8 est,23 est,45 est,85 est,129 est,290 est,454 est,468 est,476 est,604 est,709 gap,5 gap,61 gap,83 gc5Base,9 gc5Base,22 gc5Base,74 gold,6 gold,80 gold,94 gold,101 intronEst,10 intronEst,25 intronEst,86 intronEst,129 intronEst,166 intronEst,210 intronEst,371 intronEst,535 intronEst,549 intronEst,557 intronEst,685 intronEst,790 microsat,4 microsat,8 microsat,33 microsat,36 microsat,67 microsat,72 microsat,75 mrna,8 mrna,21 mrna,26 mrna,75 mrna,236 mrna,355 mrna,425 nestedRepeats,12 nestedRepeats,38 nestedRepeats,113 nestedRepeats,162 nestedRepeats,166 nestedRepeats,231 nestedRepeats,256 nestedRepeats,309 nestedRepeats,315 nestedRepeats,346 nestedRepeats,375 netBosTau7,99 netBosTau7,113 netBosTau7,227 netBosTau7,235 netBosTau7,249 netBosTau7,287 netBosTau7,310 netBosTau7,436 netBosTau7,590 netBosTau7,625 netBosTau7,633 netBosTau7,774 netBosTau7,852 netBosTau7,884 netBosTau7,895 netBosTau7,904 netBosTau7,929 netBosTau7,944 netBosTau7,969 netBosTau7,975 netBosTau7,981 netBosTau7,988 netBosTau7,994 netBosTau7,1058 netBosTau7,1063 netHg19,97 netHg19,111 netHg19,225 netHg19,233 netHg19,247 netHg19,285 netHg19,307 netHg19,433 netHg19,587 netHg19,622 netHg19,630 netHg19,771 netHg19,849 netHg19,881 netHg19,892 netHg19,901 netHg19,926 netHg19,941 netHg19,966 netHg19,972 netHg19,978 netHg19,985 netHg19,991 netHg19,1055 netHg19,1060 netMm9,97 netMm9,111 netMm9,225 netMm9,233 netMm9,247 netMm9,285 netMm9,307 netMm9,433 netMm9,587 netMm9,622 netMm9,630 netMm9,771 netMm9,849 netMm9,881 netMm9,892 netMm9,901 netMm9,926 netMm9,941 netMm9,966 netMm9,972 netMm9,978 netMm9,985 netMm9,991 netMm9,1055 netMm9,1060 netMonDom5,97 netMonDom5,111 netMonDom5,225 netMonDom5,233 netMonDom5,247 netMonDom5,285 netMonDom5,307 netMonDom5,433 netMonDom5,587 netMonDom5,622 netMonDom5,630 netMonDom5,771 netMonDom5,849 netMonDom5,881 netMonDom5,892 netMonDom5,901 netMonDom5,926 netMonDom5,941 netMonDom5,966 netMonDom5,972 netMonDom5,978 netMonDom5,985 netMonDom5,991 netMonDom5,1055 netMonDom5,1060 nscanGene,6 nscanGene,97 nscanGene,146 nscanGene,257 numtS,5 numtS,8 numtS,50 numtS,77 numtS,119 numtS,145 numtS,205 numtS,337 numtS,419 numtS,443 numtS,481 numtS,491 numtS,500 numtS,514 numtS,525 numtS,562 numtS,567 numtS,600 numtSAssembled,7 numtSAssembled,10 numtSAssembled,52 numtSAssembled,79 numtSAssembled,121 numtSAssembled,147 numtSAssembled,207 numtSAssembled,339 numtSAssembled,421 numtSAssembled,445 numtSAssembled,483 numtSAssembled,493 numtSAssembled,502 numtSAssembled,516 numtSAssembled,527 numtSAssembled,564 numtSAssembled,569 numtSAssembled,602 numtSMitochondrion,9 numtSMitochondrion,12 numtSMitochondrion,54 numtSMitochondrion,81 numtSMitochondrion,123 numtSMitochondrion,149 numtSMitochondrion,209 numtSMitochondrion,341 numtSMitochondrion,423 numtSMitochondrion,447 numtSMitochondrion,485 numtSMitochondrion,495 numtSMitochondrion,504 numtSMitochondrion,518 numtSMitochondrion,529 numtSMitochondrion,566 numtSMitochondrion,571 numtSMitochondrion,604 numtSeq2012,8 numtSeq2012,11 numtSeq2012,53 numtSeq2012,80 numtSeq2012,122 numtSeq2012,148 numtSeq2012,208 numtSeq2012,340 numtSeq2012,422 numtSeq2012,446 numtSeq2012,484 numtSeq2012,494 numtSeq2012,503 numtSeq2012,517 numtSeq2012,528 numtSeq2012,565 numtSeq2012,570 numtSeq2012,603 rmsk,7 rmsk,28 rmsk,137 rmsk,221 rmsk,332 rmsk,338 rmsk,369 rmsk,398 simpleRepeat,9 simpleRepeat,42 tRNAs,10 tRNAs,33 tRNAs,75 tRNAs,103 tRNAs,175 tRNAs,209 tRNAs,316 tRNAs,331 xenoMrna,8 xenoMrna,19 xenoMrna,31 xenoMrna,150 xenoMrna,311 xenoMrna,430 xenoMrna,500 xenoRefGene,7 xenoRefGene,16 xenoRefGene,43 xenoRefGene,77 xenoRefGene,127 xenoRefGene,152 xenoRefGene,185 xenoRefGene,198 xenoRefGene,265 xenoRefGene,292 xenoRefGene,377 annotated numtS,253 numtSAssembled,255 numtSMitochondrion,257 numtSeq2012,256 rmsk,67 annotating numtS,106 numtSAssembled,108 numtSMitochondrion,110 numtSeq2012,109 annotation chainBosTau7,298 chainHg19,296 chainMm9,296 chainMonDom5,296 chainNetBosTau7,301 chainNetHg19,299 chainNetMm9,299 chainNetMonDom5,299 ensGene,172 netBosTau7,298 netHg19,296 netMm9,296 netMonDom5,296 nscanGene,207 nscanGene,262 numtS,454 numtSAssembled,456 numtSMitochondrion,458 numtSeq2012,457 rmsk,38 annotations ensGene,163 nestedRepeats,71 tRNAs,99 xenoRefGene,186 any est,313 est,547 intronEst,394 intronEst,628 mrna,259 xenoMrna,334 anything tRNAs,118 api cpgIslandExt,519 cpgIslandExtUnmasked,522 cpgIslandSuper,519 ensGene,116 appear tRNAs,326 apply est,185 intronEst,266 mrna,131 xenoMrna,206 approaches numtS,564 numtSAssembled,566 numtSMitochondrion,568 numtSeq2012,567 appropriate xenoRefGene,110 apr est,807 intronEst,891 mrna,524 tRNAs,504 xenoMrna,599 xenoRefGene,309 apsects gc5Base,51 arabidopsis nscanGene,205 arbitrary nscanGene,70 archaea tRNAs,104 archive ensGene,149 are augustusGene,27 chainBosTau7,22 chainBosTau7,41 chainBosTau7,54 chainBosTau7,142 chainBosTau7,210 chainBosTau7,221 chainBosTau7,321 chainBosTau7,390 chainBosTau7,411 chainBosTau7,418 chainBosTau7,501 chainBosTau7,690 chainHg19,21 chainHg19,40 chainHg19,53 chainHg19,140 chainHg19,208 chainHg19,219 chainHg19,318 chainHg19,387 chainHg19,408 chainHg19,415 chainHg19,498 chainHg19,687 chainMm9,21 chainMm9,40 chainMm9,53 chainMm9,140 chainMm9,208 chainMm9,219 chainMm9,318 chainMm9,387 chainMm9,408 chainMm9,415 chainMm9,498 chainMm9,687 chainMonDom5,21 chainMonDom5,40 chainMonDom5,53 chainMonDom5,140 chainMonDom5,208 chainMonDom5,219 chainMonDom5,318 chainMonDom5,387 chainMonDom5,408 chainMonDom5,415 chainMonDom5,498 chainMonDom5,687 chainNetBosTau7,25 chainNetBosTau7,44 chainNetBosTau7,57 chainNetBosTau7,145 chainNetBosTau7,213 chainNetBosTau7,224 chainNetBosTau7,324 chainNetBosTau7,393 chainNetBosTau7,414 chainNetBosTau7,421 chainNetBosTau7,504 chainNetBosTau7,693 chainNetHg19,24 chainNetHg19,43 chainNetHg19,56 chainNetHg19,143 chainNetHg19,211 chainNetHg19,222 chainNetHg19,321 chainNetHg19,390 chainNetHg19,411 chainNetHg19,418 chainNetHg19,501 chainNetHg19,690 chainNetMm9,24 chainNetMm9,43 chainNetMm9,56 chainNetMm9,143 chainNetMm9,211 chainNetMm9,222 chainNetMm9,321 chainNetMm9,390 chainNetMm9,411 chainNetMm9,418 chainNetMm9,501 chainNetMm9,690 chainNetMonDom5,24 chainNetMonDom5,43 chainNetMonDom5,56 chainNetMonDom5,143 chainNetMonDom5,211 chainNetMonDom5,222 chainNetMonDom5,321 chainNetMonDom5,390 chainNetMonDom5,411 chainNetMonDom5,418 chainNetMonDom5,501 chainNetMonDom5,690 cpgIslandExt,8 cpgIslandExt,17 cpgIslandExt,28 cpgIslandExt,116 cpgIslandExt,149 cpgIslandExt,153 cpgIslandExtUnmasked,11 cpgIslandExtUnmasked,20 cpgIslandExtUnmasked,31 cpgIslandExtUnmasked,119 cpgIslandExtUnmasked,152 cpgIslandExtUnmasked,156 cpgIslandSuper,8 cpgIslandSuper,17 cpgIslandSuper,28 cpgIslandSuper,116 cpgIslandSuper,149 cpgIslandSuper,153 ctgPos2,28 ensGene,88 ensGene,128 est,27 est,64 est,146 est,156 gap,49 gap,121 gap,137 gold,72 gold,89 gold,109 gold,127 intronEst,39 intronEst,227 intronEst,237 intronEst,800 microsat,16 microsat,25 microsat,52 mrna,45 mrna,92 mrna,102 nestedRepeats,74 nestedRepeats,102 nestedRepeats,140 nestedRepeats,146 nestedRepeats,164 nestedRepeats,172 nestedRepeats,181 nestedRepeats,209 nestedRepeats,274 nestedRepeats,281 netBosTau7,22 netBosTau7,41 netBosTau7,54 netBosTau7,142 netBosTau7,210 netBosTau7,221 netBosTau7,321 netBosTau7,390 netBosTau7,411 netBosTau7,418 netBosTau7,501 netBosTau7,690 netHg19,21 netHg19,40 netHg19,53 netHg19,140 netHg19,208 netHg19,219 netHg19,318 netHg19,387 netHg19,408 netHg19,415 netHg19,498 netHg19,687 netMm9,21 netMm9,40 netMm9,53 netMm9,140 netMm9,208 netMm9,219 netMm9,318 netMm9,387 netMm9,408 netMm9,415 netMm9,498 netMm9,687 netMonDom5,21 netMonDom5,40 netMonDom5,53 netMonDom5,140 netMonDom5,208 netMonDom5,219 netMonDom5,318 netMonDom5,387 netMonDom5,408 netMonDom5,415 netMonDom5,498 netMonDom5,687 numtS,15 numtSAssembled,17 numtSMitochondrion,19 numtSeq2012,18 rmsk,43 rmsk,288 rmsk,304 rmsk,312 simpleRepeat,49 tRNAs,105 tRNAs,168 tRNAs,190 tRNAs,202 tRNAs,262 tRNAs,266 tRNAs,292 tRNAs,297 tRNAs,333 xenoMrna,50 xenoMrna,116 xenoMrna,167 xenoMrna,177 xenoRefGene,38 xenoRefGene,103 xenoRefGene,201 areas cpgIslandExt,305 cpgIslandExtUnmasked,308 cpgIslandSuper,305 gc5Base,37 arian chainBosTau7,942 chainHg19,939 chainMm9,939 chainMonDom5,939 chainNetBosTau7,945 chainNetHg19,942 chainNetMm9,942 chainNetMonDom5,942 nestedRepeats,305 netBosTau7,942 netHg19,939 netMm9,939 netMonDom5,939 rmsk,16 rmsk,328 arise numtS,296 numtSAssembled,298 numtSMitochondrion,300 numtSeq2012,299 arrangement cpgIslandExt,67 cpgIslandExtUnmasked,70 cpgIslandSuper,67 arrows nestedRepeats,145 nestedRepeats,163 numtS,210 numtS,342 numtSAssembled,212 numtSAssembled,344 numtSMitochondrion,214 numtSMitochondrion,346 numtSeq2012,213 numtSeq2012,345 articles tRNAs,365 as augustusGene,77 augustusGene,79 chainBosTau7,463 chainBosTau7,503 chainBosTau7,526 chainBosTau7,541 chainBosTau7,801 chainBosTau7,856 chainBosTau7,914 chainHg19,460 chainHg19,500 chainHg19,523 chainHg19,538 chainHg19,798 chainHg19,853 chainHg19,911 chainMm9,460 chainMm9,500 chainMm9,523 chainMm9,538 chainMm9,798 chainMm9,853 chainMm9,911 chainMonDom5,460 chainMonDom5,500 chainMonDom5,523 chainMonDom5,538 chainMonDom5,798 chainMonDom5,853 chainMonDom5,911 chainNetBosTau7,466 chainNetBosTau7,506 chainNetBosTau7,529 chainNetBosTau7,544 chainNetBosTau7,804 chainNetBosTau7,859 chainNetBosTau7,917 chainNetHg19,463 chainNetHg19,503 chainNetHg19,526 chainNetHg19,541 chainNetHg19,801 chainNetHg19,856 chainNetHg19,914 chainNetMm9,463 chainNetMm9,503 chainNetMm9,526 chainNetMm9,541 chainNetMm9,801 chainNetMm9,856 chainNetMm9,914 chainNetMonDom5,463 chainNetMonDom5,503 chainNetMonDom5,526 chainNetMonDom5,541 chainNetMonDom5,801 chainNetMonDom5,856 chainNetMonDom5,914 cpgIslandExt,165 cpgIslandExt,548 cpgIslandExt,550 cpgIslandExtUnmasked,168 cpgIslandExtUnmasked,551 cpgIslandExtUnmasked,553 cpgIslandSuper,165 cpgIslandSuper,548 cpgIslandSuper,550 ensGene,94 est,594 gap,51 intronEst,675 microsat,21 nestedRepeats,125 netBosTau7,463 netBosTau7,503 netBosTau7,526 netBosTau7,541 netBosTau7,801 netBosTau7,856 netBosTau7,914 netHg19,460 netHg19,500 netHg19,523 netHg19,538 netHg19,798 netHg19,853 netHg19,911 netMm9,460 netMm9,500 netMm9,523 netMm9,538 netMm9,798 netMm9,853 netMm9,911 netMonDom5,460 netMonDom5,500 netMonDom5,523 netMonDom5,538 netMonDom5,798 netMonDom5,853 netMonDom5,911 nscanGene,75 nscanGene,77 nscanGene,104 numtS,284 numtS,286 numtSAssembled,286 numtSAssembled,288 numtSMitochondrion,288 numtSMitochondrion,290 numtSeq2012,287 numtSeq2012,289 rmsk,53 rmsk,55 tRNAs,42 tRNAs,288 xenoMrna,123 xenoMrna,128 assembled ctgPos2,15 numtS,108 numtS,241 numtS,245 numtSAssembled,2 numtSAssembled,5 numtSAssembled,110 numtSAssembled,243 numtSAssembled,247 numtSMitochondrion,112 numtSMitochondrion,245 numtSMitochondrion,249 numtSeq2012,111 numtSeq2012,244 numtSeq2012,248 assemblies augustusGene,196 augustusGene,237 chainBosTau7,320 chainBosTau7,582 chainHg19,317 chainHg19,579 chainMm9,317 chainMm9,579 chainMonDom5,317 chainMonDom5,579 chainNetBosTau7,323 chainNetBosTau7,585 chainNetHg19,320 chainNetHg19,582 chainNetMm9,320 chainNetMm9,582 chainNetMonDom5,320 chainNetMonDom5,582 netBosTau7,320 netBosTau7,582 netHg19,317 netHg19,579 netMm9,317 netMm9,579 netMonDom5,317 netMonDom5,579 nscanGene,212 rmsk,107 assembling numtS,251 numtS,434 numtSAssembled,253 numtSAssembled,436 numtSMitochondrion,255 numtSMitochondrion,438 numtSeq2012,254 numtSeq2012,437 assembly augustusGene,197 chainBosTau7,151 chainBosTau7,158 chainBosTau7,307 chainHg19,149 chainHg19,156 chainHg19,304 chainMm9,149 chainMm9,156 chainMm9,304 chainMonDom5,149 chainMonDom5,156 chainMonDom5,304 chainNetBosTau7,154 chainNetBosTau7,161 chainNetBosTau7,310 chainNetHg19,152 chainNetHg19,159 chainNetHg19,307 chainNetMm9,152 chainNetMm9,159 chainNetMm9,307 chainNetMonDom5,152 chainNetMonDom5,159 chainNetMonDom5,307 ctgPos2,2 gap,15 gap,97 gap,130 gap,145 gap,159 gold,1 gold,2 gold,16 gold,32 netBosTau7,151 netBosTau7,158 netBosTau7,307 netHg19,149 netHg19,156 netHg19,304 netMm9,149 netMm9,156 netMm9,304 netMonDom5,149 netMonDom5,156 netMonDom5,304 numtS,166 numtS,394 numtS,418 numtSAssembled,168 numtSAssembled,396 numtSAssembled,420 numtSMitochondrion,170 numtSMitochondrion,398 numtSMitochondrion,422 numtSeq2012,169 numtSeq2012,397 numtSeq2012,421 assembly.2bit cpgIslandExt,412 cpgIslandExtUnmasked,415 cpgIslandSuper,412 associated cpgIslandExt,18 cpgIslandExt,38 cpgIslandExt,510 cpgIslandExtUnmasked,21 cpgIslandExtUnmasked,41 cpgIslandExtUnmasked,513 cpgIslandSuper,18 cpgIslandSuper,38 cpgIslandSuper,510 est,107 gc5Base,34 intronEst,188 rmsk,224 simpleRepeat,51 astashyn xenoRefGene,325 at blastHg18KG,125 chainBosTau7,420 chainBosTau7,796 chainBosTau7,918 chainBosTau7,953 chainBosTau7,958 chainBosTau7,999 chainHg19,417 chainHg19,793 chainHg19,915 chainHg19,950 chainHg19,955 chainHg19,996 chainMm9,417 chainMm9,793 chainMm9,915 chainMm9,950 chainMm9,955 chainMm9,996 chainMonDom5,417 chainMonDom5,793 chainMonDom5,915 chainMonDom5,950 chainMonDom5,955 chainMonDom5,996 chainNetBosTau7,423 chainNetBosTau7,799 chainNetBosTau7,921 chainNetBosTau7,956 chainNetBosTau7,961 chainNetBosTau7,1002 chainNetHg19,420 chainNetHg19,796 chainNetHg19,918 chainNetHg19,953 chainNetHg19,958 chainNetHg19,999 chainNetMm9,420 chainNetMm9,796 chainNetMm9,918 chainNetMm9,953 chainNetMm9,958 chainNetMm9,999 chainNetMonDom5,420 chainNetMonDom5,796 chainNetMonDom5,918 chainNetMonDom5,953 chainNetMonDom5,958 chainNetMonDom5,999 cpgIslandExt,155 cpgIslandExt,218 cpgIslandExt,235 cpgIslandExtUnmasked,158 cpgIslandExtUnmasked,221 cpgIslandExtUnmasked,238 cpgIslandSuper,155 cpgIslandSuper,218 cpgIslandSuper,235 est,262 est,546 est,591 est,710 est,726 intronEst,65 intronEst,80 intronEst,105 intronEst,343 intronEst,627 intronEst,672 intronEst,791 intronEst,810 microsat,28 microsat,77 mrna,208 mrna,426 mrna,443 netBosTau7,420 netBosTau7,796 netBosTau7,918 netBosTau7,953 netBosTau7,958 netBosTau7,999 netHg19,417 netHg19,793 netHg19,915 netHg19,950 netHg19,955 netHg19,996 netMm9,417 netMm9,793 netMm9,915 netMm9,950 netMm9,955 netMm9,996 netMonDom5,417 netMonDom5,793 netMonDom5,915 netMonDom5,950 netMonDom5,955 netMonDom5,996 nscanGene,28 nscanGene,123 nscanGene,150 rmsk,243 rmsk,267 tRNAs,107 tRNAs,339 xenoMrna,283 xenoMrna,501 xenoMrna,518 xenoRefGene,91 xenoRefGene,266 xenoRefGene,282 attempt est,578 intronEst,659 attimonelli numtS,93 numtS,483 numtS,522 numtS,556 numtS,590 numtSAssembled,95 numtSAssembled,485 numtSAssembled,524 numtSAssembled,558 numtSAssembled,592 numtSMitochondrion,97 numtSMitochondrion,487 numtSMitochondrion,526 numtSMitochondrion,560 numtSMitochondrion,594 numtSeq2012,96 numtSeq2012,486 numtSeq2012,525 numtSeq2012,559 numtSeq2012,593 atypical tRNAs,274 aug tRNAs,433 augustus augustusGene,1 augustusGene,2 augustusGene,22 augustusGene,148 augustusGene,256 austria nscanGene,157 available augustusGene,239 cpgIslandExt,543 cpgIslandExtUnmasked,546 cpgIslandSuper,543 ensGene,89 ensGene,129 nestedRepeats,259 nestedRepeats,276 rmsk,73 tRNAs,106 average nestedRepeats,186 nestedRepeats,221 awk cpgIslandExt,424 cpgIslandExtUnmasked,427 cpgIslandSuper,424 axt chainBosTau7,603 chainBosTau7,610 chainHg19,600 chainHg19,607 chainMm9,600 chainMm9,607 chainMonDom5,600 chainMonDom5,607 chainNetBosTau7,606 chainNetBosTau7,613 chainNetHg19,603 chainNetHg19,610 chainNetMm9,603 chainNetMm9,610 chainNetMonDom5,603 chainNetMonDom5,610 netBosTau7,603 netBosTau7,610 netHg19,600 netHg19,607 netMm9,600 netMm9,607 netMonDom5,600 netMonDom5,607 axtchain chainBosTau7,615 chainBosTau7,701 chainBosTau7,949 chainHg19,612 chainHg19,698 chainHg19,946 chainMm9,612 chainMm9,698 chainMm9,946 chainMonDom5,612 chainMonDom5,698 chainMonDom5,946 chainNetBosTau7,618 chainNetBosTau7,704 chainNetBosTau7,952 chainNetHg19,615 chainNetHg19,701 chainNetHg19,949 chainNetMm9,615 chainNetMm9,701 chainNetMm9,949 chainNetMonDom5,615 chainNetMonDom5,701 chainNetMonDom5,949 netBosTau7,615 netBosTau7,701 netBosTau7,949 netHg19,612 netHg19,698 netHg19,946 netMm9,612 netMm9,698 netMm9,946 netMonDom5,612 netMonDom5,698 netMonDom5,946 b tRNAs,36 bac gold,37 back chainBosTau7,595 chainHg19,592 chainMm9,592 chainMonDom5,592 chainNetBosTau7,598 chainNetHg19,595 chainNetMm9,595 chainNetMonDom5,595 netBosTau7,595 netHg19,592 netMm9,592 netMonDom5,592 bacteria tRNAs,102 baertsch augustusGene,290 chainBosTau7,987 chainBosTau7,1045 chainBosTau7,1091 chainHg19,984 chainHg19,1042 chainHg19,1088 chainMm9,984 chainMm9,1042 chainMm9,1088 chainMonDom5,984 chainMonDom5,1042 chainMonDom5,1088 chainNetBosTau7,990 chainNetBosTau7,1048 chainNetBosTau7,1094 chainNetHg19,987 chainNetHg19,1045 chainNetHg19,1091 chainNetMm9,987 chainNetMm9,1045 chainNetMm9,1091 chainNetMonDom5,987 chainNetMonDom5,1045 chainNetMonDom5,1091 netBosTau7,987 netBosTau7,1045 netBosTau7,1091 netHg19,984 netHg19,1042 netHg19,1088 netMm9,984 netMm9,1042 netMm9,1088 netMonDom5,984 netMonDom5,1042 netMonDom5,1088 balacco numtS,478 numtS,513 numtSAssembled,480 numtSAssembled,515 numtSMitochondrion,482 numtSMitochondrion,517 numtSeq2012,481 numtSeq2012,516 bam numtS,463 numtSAssembled,465 numtSMitochondrion,467 numtSeq2012,466 baren nscanGene,250 bari numtS,96 numtS,496 numtSAssembled,98 numtSAssembled,498 numtSMitochondrion,100 numtSMitochondrion,500 numtSeq2012,99 numtSeq2012,499 barker ensGene,177 base cpgIslandExt,46 cpgIslandExt,53 cpgIslandExt,234 cpgIslandExtUnmasked,49 cpgIslandExtUnmasked,56 cpgIslandExtUnmasked,237 cpgIslandSuper,46 cpgIslandSuper,53 cpgIslandSuper,234 est,383 est,417 est,693 est,701 est,713 intronEst,464 intronEst,498 intronEst,774 intronEst,782 intronEst,794 mrna,356 mrna,409 mrna,417 mrna,429 rmsk,217 rmsk,219 rmsk,222 xenoMrna,431 xenoMrna,483 xenoMrna,492 xenoMrna,504 xenoRefGene,249 xenoRefGene,257 xenoRefGene,269 based augustusGene,28 chainBosTau7,323 chainBosTau7,349 chainHg19,320 chainHg19,346 chainMm9,320 chainMm9,346 chainMonDom5,320 chainMonDom5,346 chainNetBosTau7,326 chainNetBosTau7,352 chainNetHg19,323 chainNetHg19,349 chainNetMm9,323 chainNetMm9,349 chainNetMonDom5,323 chainNetMonDom5,349 netBosTau7,323 netBosTau7,349 netHg19,320 netHg19,346 netMm9,320 netMm9,346 netMonDom5,320 netMonDom5,346 numtS,148 numtSAssembled,150 numtSMitochondrion,152 numtSeq2012,151 tRNAs,268 bases cpgIslandExt,7 cpgIslandExt,353 cpgIslandExtUnmasked,10 cpgIslandExtUnmasked,356 cpgIslandSuper,7 cpgIslandSuper,353 est,33 est,394 est,666 gap,148 gc5Base,25 intronEst,45 intronEst,83 intronEst,475 intronEst,747 basic blastHg18KG,163 basis cpgIslandExt,289 cpgIslandExtUnmasked,292 cpgIslandSuper,289 baylor chainBosTau7,6 chainBosTau7,69 chainBosTau7,304 chainNetBosTau7,7 chainNetBosTau7,72 chainNetBosTau7,307 chainNetBosTau7Viewchain,5 chainNetBosTau7Viewnet,5 netBosTau7,6 netBosTau7,69 netBosTau7,304 be augustusGene,99 chainBosTau7,108 chainBosTau7,430 chainHg19,106 chainHg19,427 chainMm9,106 chainMm9,427 chainMonDom5,106 chainMonDom5,427 chainNetBosTau7,111 chainNetBosTau7,433 chainNetHg19,109 chainNetHg19,430 chainNetMm9,109 chainNetMm9,430 chainNetMonDom5,109 chainNetMonDom5,430 cpgIslandExt,37 cpgIslandExt,70 cpgIslandExt,187 cpgIslandExt,513 cpgIslandExt,532 cpgIslandExt,561 cpgIslandExt,572 cpgIslandExtUnmasked,40 cpgIslandExtUnmasked,73 cpgIslandExtUnmasked,190 cpgIslandExtUnmasked,516 cpgIslandExtUnmasked,535 cpgIslandExtUnmasked,564 cpgIslandExtUnmasked,575 cpgIslandSuper,37 cpgIslandSuper,70 cpgIslandSuper,187 cpgIslandSuper,513 cpgIslandSuper,532 cpgIslandSuper,561 cpgIslandSuper,572 ensGene,68 ensGene,111 ensGene,145 est,106 est,119 est,141 est,250 est,260 est,271 est,302 est,320 est,330 est,379 est,430 est,526 est,634 gap,42 gc5Base,41 intronEst,56 intronEst,79 intronEst,187 intronEst,200 intronEst,222 intronEst,331 intronEst,341 intronEst,352 intronEst,383 intronEst,401 intronEst,411 intronEst,460 intronEst,511 intronEst,607 intronEst,715 microsat,19 microsat,39 mrna,65 mrna,87 mrna,196 mrna,206 mrna,217 mrna,248 mrna,266 mrna,276 mrna,325 mrna,369 nestedRepeats,269 nestedRepeats,291 netBosTau7,108 netBosTau7,430 netHg19,106 netHg19,427 netMm9,106 netMm9,427 netMonDom5,106 netMonDom5,427 numtS,69 numtS,268 numtS,275 numtSAssembled,71 numtSAssembled,270 numtSAssembled,277 numtSMitochondrion,73 numtSMitochondrion,272 numtSMitochondrion,279 numtSeq2012,72 numtSeq2012,271 numtSeq2012,278 rmsk,278 rmsk,284 rmsk,298 simpleRepeat,44 tRNAs,128 tRNAs,220 tRNAs,227 xenoMrna,140 xenoMrna,162 xenoMrna,271 xenoMrna,281 xenoMrna,292 xenoMrna,323 xenoMrna,341 xenoMrna,351 xenoMrna,400 xenoMrna,444 xenoRefGene,86 bears est,91 intronEst,172 because cpgIslandExt,61 cpgIslandExt,107 cpgIslandExtUnmasked,64 cpgIslandExtUnmasked,110 cpgIslandSuper,61 cpgIslandSuper,107 est,626 intronEst,707 xenoMrna,102 bed numtS,446 numtSAssembled,448 numtSMitochondrion,450 numtSeq2012,449 been chainBosTau7,571 chainHg19,568 chainMm9,568 chainMonDom5,568 chainNetBosTau7,574 chainNetHg19,571 chainNetMm9,571 chainNetMonDom5,571 intronEst,7 nestedRepeats,89 netBosTau7,571 netHg19,568 netMm9,568 netMonDom5,568 numtS,85 numtS,504 numtSAssembled,87 numtSAssembled,506 numtSMitochondrion,89 numtSMitochondrion,508 numtSeq2012,88 numtSeq2012,507 rmsk,70 rmsk,109 before chainBosTau7,903 chainHg19,900 chainMm9,900 chainMonDom5,900 chainNetBosTau7,906 chainNetHg19,903 chainNetMm9,903 chainNetMonDom5,903 est,563 intronEst,644 netBosTau7,903 netHg19,900 netMm9,900 netMonDom5,900 below chainBosTau7,677 chainHg19,674 chainMm9,674 chainMonDom5,674 chainNetBosTau7,680 chainNetHg19,677 chainNetMm9,677 chainNetMonDom5,677 ensGene,61 nestedRepeats,68 netBosTau7,677 netHg19,674 netMm9,674 netMonDom5,674 numtS,139 numtSAssembled,141 numtSMitochondrion,143 numtSeq2012,142 rmsk,104 tRNAs,179 benson est,743 est,771 intronEst,827 intronEst,855 microsat,102 microsat,112 microsat,114 mrna,460 mrna,488 simpleRepeat,64 simpleRepeat,72 simpleRepeat,74 xenoMrna,535 xenoMrna,563 best blastHg18KG,100 chainBosTau7,267 chainBosTau7,513 chainHg19,265 chainHg19,510 chainMm9,265 chainMm9,510 chainMonDom5,265 chainMonDom5,510 chainNetBosTau7,270 chainNetBosTau7,516 chainNetHg19,268 chainNetHg19,513 chainNetMm9,268 chainNetMm9,513 chainNetMonDom5,268 chainNetMonDom5,513 est,708 intronEst,789 mrna,424 netBosTau7,267 netBosTau7,513 netHg19,265 netHg19,510 netMm9,265 netMm9,510 netMonDom5,265 netMonDom5,510 xenoMrna,499 xenoRefGene,264 better est,71 mrna,52 tRNAs,254 xenoMrna,57 between chainBosTau7,52 chainBosTau7,620 chainBosTau7,850 chainHg19,51 chainHg19,617 chainHg19,847 chainMm9,51 chainMm9,617 chainMm9,847 chainMonDom5,51 chainMonDom5,617 chainMonDom5,847 chainNetBosTau7,55 chainNetBosTau7,623 chainNetBosTau7,853 chainNetHg19,54 chainNetHg19,620 chainNetHg19,850 chainNetMm9,54 chainNetMm9,620 chainNetMm9,850 chainNetMonDom5,54 chainNetMonDom5,620 chainNetMonDom5,850 est,15 est,82 gap,107 gap,112 gap,133 gold,86 gold,91 intronEst,17 intronEst,74 intronEst,163 mrna,16 netBosTau7,52 netBosTau7,620 netBosTau7,850 netHg19,51 netHg19,617 netHg19,847 netMm9,51 netMm9,617 netMm9,847 netMonDom5,51 netMonDom5,617 netMonDom5,847 nscanGene,88 numtS,236 numtS,272 numtS,304 numtS,410 numtSAssembled,238 numtSAssembled,274 numtSAssembled,306 numtSAssembled,412 numtSMitochondrion,240 numtSMitochondrion,276 numtSMitochondrion,308 numtSMitochondrion,414 numtSeq2012,239 numtSeq2012,275 numtSeq2012,307 numtSeq2012,413 tRNAs,199 binary cpgIslandExt,570 cpgIslandExtUnmasked,573 cpgIslandSuper,570 biochemical tRNAs,271 biocomput chainBosTau7,1038 chainHg19,1035 chainMm9,1035 chainMonDom5,1035 chainNetBosTau7,1041 chainNetHg19,1038 chainNetMm9,1038 chainNetMonDom5,1038 netBosTau7,1038 netHg19,1035 netMm9,1035 netMonDom5,1035 bioinformatics augustusGene,307 augustusGene,332 nscanGene,241 numtS,88 numtS,534 numtS,563 numtSAssembled,90 numtSAssembled,536 numtSAssembled,565 numtSMitochondrion,92 numtSMitochondrion,538 numtSMitochondrion,567 numtSeq2012,91 numtSeq2012,537 numtSeq2012,566 biol blastHg18KG,170 cpgIslandExt,615 cpgIslandExtUnmasked,618 cpgIslandSuper,615 nscanGene,172 tRNAs,431 biological-signal nscanGene,39 biosciences numtS,489 numtSAssembled,491 numtSMitochondrion,493 numtSeq2012,492 biotechnology numtS,490 numtSAssembled,492 numtSMitochondrion,494 numtSeq2012,493 birds augustusGene,203 birney ensGene,179 bits tRNAs,124 tRNAs,167 tRNAs,201 bj nscanGene,181 black gap,52 gap,91 blast blastHg18KG,144 blastHg18KG,151 blast-like est,801 intronEst,885 mrna,518 xenoMrna,593 xenoRefGene,303 blast2seq numtS,407 numtSAssembled,409 numtSMitochondrion,411 numtSeq2012,410 blastn numtS,189 numtS,204 numtS,336 numtS,409 numtSAssembled,191 numtSAssembled,206 numtSAssembled,338 numtSAssembled,411 numtSMitochondrion,193 numtSMitochondrion,208 numtSMitochondrion,340 numtSMitochondrion,413 numtSeq2012,192 numtSeq2012,207 numtSeq2012,339 numtSeq2012,412 blastz chainBosTau7,915 chainBosTau7,1102 chainHg19,912 chainHg19,1099 chainMm9,912 chainMm9,1099 chainMonDom5,912 chainMonDom5,1099 chainNetBosTau7,918 chainNetBosTau7,1105 chainNetHg19,915 chainNetHg19,1102 chainNetMm9,915 chainNetMm9,1102 chainNetMonDom5,915 chainNetMonDom5,1102 netBosTau7,915 netBosTau7,1102 netHg19,912 netHg19,1099 netMm9,912 netMm9,1099 netMonDom5,912 netMonDom5,1099 blat blastHg18KG,54 blastHg18KG,177 est,653 est,662 est,799 intronEst,734 intronEst,743 intronEst,883 mrna,394 mrna,516 xenoMrna,15 xenoMrna,469 xenoMrna,591 xenoRefGene,225 blat--the xenoRefGene,302 blocks chainBosTau7,45 chainBosTau7,642 chainBosTau7,663 chainHg19,44 chainHg19,639 chainHg19,660 chainMm9,44 chainMm9,639 chainMm9,660 chainMonDom5,44 chainMonDom5,639 chainMonDom5,660 chainNetBosTau7,48 chainNetBosTau7,645 chainNetBosTau7,666 chainNetHg19,47 chainNetHg19,642 chainNetHg19,663 chainNetMm9,47 chainNetMm9,642 chainNetMm9,663 chainNetMonDom5,47 chainNetMonDom5,642 chainNetMonDom5,663 gold,96 gold,122 intronEst,77 netBosTau7,45 netBosTau7,642 netBosTau7,663 netHg19,44 netHg19,639 netHg19,660 netMm9,44 netMm9,639 netMm9,660 netMonDom5,44 netMonDom5,639 netMonDom5,660 blog cpgIslandExt,553 cpgIslandExtUnmasked,556 cpgIslandSuper,553 ensGene,138 bmc numtS,533 numtS,571 numtS,607 numtSAssembled,535 numtSAssembled,573 numtSAssembled,609 numtSMitochondrion,537 numtSMitochondrion,575 numtSMitochondrion,611 numtSeq2012,536 numtSeq2012,574 numtSeq2012,610 bolchi tRNAs,474 bostau7 chainBosTau7,8 chainBosTau7,71 chainBosTau7,306 chainNetBosTau7,9 chainNetBosTau7,74 chainNetBosTau7,309 chainNetBosTau7Viewchain,7 chainNetBosTau7Viewnet,7 netBosTau7,8 netBosTau7,71 netBosTau7,306 both chainBosTau7,97 chainBosTau7,117 chainBosTau7,170 chainBosTau7,893 chainHg19,95 chainHg19,115 chainHg19,168 chainHg19,890 chainMm9,95 chainMm9,115 chainMm9,168 chainMm9,890 chainMonDom5,95 chainMonDom5,115 chainMonDom5,168 chainMonDom5,890 chainNetBosTau7,100 chainNetBosTau7,120 chainNetBosTau7,173 chainNetBosTau7,896 chainNetHg19,98 chainNetHg19,118 chainNetHg19,171 chainNetHg19,893 chainNetMm9,98 chainNetMm9,118 chainNetMm9,171 chainNetMm9,893 chainNetMonDom5,98 chainNetMonDom5,118 chainNetMonDom5,171 chainNetMonDom5,893 netBosTau7,97 netBosTau7,117 netBosTau7,170 netBosTau7,893 netHg19,95 netHg19,115 netHg19,168 netHg19,890 netMm9,95 netMm9,115 netMm9,168 netMm9,890 netMonDom5,95 netMonDom5,115 netMonDom5,168 netMonDom5,890 tRNAs,329 xenoRefGene,124 xenoRefGene,195 bothgap chainBosTau7,744 chainHg19,741 chainMm9,741 chainMonDom5,741 chainNetBosTau7,747 chainNetHg19,744 chainNetMm9,744 chainNetMonDom5,744 netBosTau7,744 netHg19,741 netMm9,741 netMonDom5,741 boundaries blastHg18KG,59 gold,71 box chainBosTau7,373 chainBosTau7,455 chainHg19,370 chainHg19,452 chainMm9,370 chainMm9,452 chainMonDom5,370 chainMonDom5,452 chainNetBosTau7,376 chainNetBosTau7,458 chainNetHg19,373 chainNetHg19,455 chainNetMm9,373 chainNetMm9,455 chainNetMonDom5,373 chainNetMonDom5,455 est,205 est,216 est,256 gap,92 intronEst,286 intronEst,297 intronEst,337 mrna,151 mrna,162 mrna,202 netBosTau7,373 netBosTau7,455 netHg19,370 netHg19,452 netMm9,370 netMm9,452 netMonDom5,370 netMonDom5,452 tRNAs,37 xenoMrna,226 xenoMrna,237 xenoMrna,277 xenoRefGene,214 boxes chainBosTau7,123 chainBosTau7,133 chainBosTau7,444 chainHg19,121 chainHg19,131 chainHg19,441 chainMm9,121 chainMm9,131 chainMm9,441 chainMonDom5,121 chainMonDom5,131 chainMonDom5,441 chainNetBosTau7,126 chainNetBosTau7,136 chainNetBosTau7,447 chainNetHg19,124 chainNetHg19,134 chainNetHg19,444 chainNetMm9,124 chainNetMm9,134 chainNetMm9,444 chainNetMonDom5,124 chainNetMonDom5,134 chainNetMonDom5,444 est,176 gap,53 intronEst,257 mrna,122 nestedRepeats,126 netBosTau7,123 netBosTau7,133 netBosTau7,444 netHg19,121 netHg19,131 netHg19,441 netMm9,121 netMm9,131 netMm9,441 netMonDom5,121 netMonDom5,131 netMonDom5,441 xenoMrna,197 bp cpgIslandExt,272 cpgIslandExtUnmasked,275 cpgIslandSuper,272 branch-point augustusGene,55 break numtS,55 numtSAssembled,57 numtSMitochondrion,59 numtSeq2012,58 brent nscanGene,118 nscanGene,144 nscanGene,161 nscanGene,232 nscanGene,252 brian blastHg18KG,197 bridge gold,120 bridged gap,81 broad chainMonDom5,6 chainMonDom5,68 chainMonDom5,302 chainNetMonDom5,7 chainNetMonDom5,71 chainNetMonDom5,305 chainNetMonDom5Viewchain,5 chainNetMonDom5Viewnet,5 netMonDom5,6 netMonDom5,68 netMonDom5,302 brown gold,81 gold,95 xenoRefGene,319 browser chainBosTau7,973 chainHg19,970 chainMm9,970 chainMonDom5,970 chainNetBosTau7,976 chainNetHg19,973 chainNetMm9,973 chainNetMonDom5,973 cpgIslandExt,522 cpgIslandExtUnmasked,525 cpgIslandSuper,522 ensGene,74 est,223 est,347 est,364 intronEst,304 intronEst,428 intronEst,445 mrna,169 mrna,293 mrna,310 nestedRepeats,243 netBosTau7,973 netHg19,970 netMm9,970 netMonDom5,970 numtS,532 numtS,606 numtSAssembled,534 numtSAssembled,608 numtSMitochondrion,536 numtSMitochondrion,610 numtSeq2012,535 numtSeq2012,609 xenoMrna,244 xenoMrna,368 xenoMrna,385 bruccoleri tRNAs,353 btau_4.6.1 chainBosTau7,7 chainBosTau7,70 chainBosTau7,305 chainNetBosTau7,8 chainNetBosTau7,73 chainNetBosTau7,308 chainNetBosTau7Viewchain,6 chainNetBosTau7Viewnet,6 netBosTau7,7 netBosTau7,70 netBosTau7,305 built augustusGene,51 augustusGene,67 burks tRNAs,419 but blastHg18KG,94 chainBosTau7,546 chainHg19,543 chainMm9,543 chainMonDom5,543 chainNetBosTau7,549 chainNetHg19,546 chainNetMm9,546 chainNetMonDom5,546 est,483 est,540 est,593 intronEst,564 intronEst,621 intronEst,674 netBosTau7,546 netHg19,543 netMm9,543 netMonDom5,543 rmsk,311 button chainBosTau7,344 chainHg19,341 chainMm9,341 chainMonDom5,341 chainNetBosTau7,347 chainNetHg19,344 chainNetMm9,344 chainNetMonDom5,344 netBosTau7,344 netHg19,341 netMm9,341 netMonDom5,341 by augustusGene,147 augustusGene,266 augustusGene,282 blastHg18KG,6 blastHg18KG,180 blastHg18KG,193 chainBosTau7,110 chainBosTau7,126 chainBosTau7,314 chainBosTau7,377 chainBosTau7,414 chainBosTau7,432 chainBosTau7,810 chainBosTau7,922 chainBosTau7,941 chainBosTau7,961 chainBosTau7,985 chainBosTau7,1006 chainHg19,108 chainHg19,124 chainHg19,311 chainHg19,374 chainHg19,411 chainHg19,429 chainHg19,807 chainHg19,919 chainHg19,938 chainHg19,958 chainHg19,982 chainHg19,1003 chainMm9,108 chainMm9,124 chainMm9,311 chainMm9,374 chainMm9,411 chainMm9,429 chainMm9,807 chainMm9,919 chainMm9,938 chainMm9,958 chainMm9,982 chainMm9,1003 chainMonDom5,108 chainMonDom5,124 chainMonDom5,311 chainMonDom5,374 chainMonDom5,411 chainMonDom5,429 chainMonDom5,807 chainMonDom5,919 chainMonDom5,938 chainMonDom5,958 chainMonDom5,982 chainMonDom5,1003 chainNetBosTau7,113 chainNetBosTau7,129 chainNetBosTau7,317 chainNetBosTau7,380 chainNetBosTau7,417 chainNetBosTau7,435 chainNetBosTau7,813 chainNetBosTau7,925 chainNetBosTau7,944 chainNetBosTau7,964 chainNetBosTau7,988 chainNetBosTau7,1009 chainNetHg19,111 chainNetHg19,127 chainNetHg19,314 chainNetHg19,377 chainNetHg19,414 chainNetHg19,432 chainNetHg19,810 chainNetHg19,922 chainNetHg19,941 chainNetHg19,961 chainNetHg19,985 chainNetHg19,1006 chainNetMm9,111 chainNetMm9,127 chainNetMm9,314 chainNetMm9,377 chainNetMm9,414 chainNetMm9,432 chainNetMm9,810 chainNetMm9,922 chainNetMm9,941 chainNetMm9,961 chainNetMm9,985 chainNetMm9,1006 chainNetMonDom5,111 chainNetMonDom5,127 chainNetMonDom5,314 chainNetMonDom5,377 chainNetMonDom5,414 chainNetMonDom5,432 chainNetMonDom5,810 chainNetMonDom5,922 chainNetMonDom5,941 chainNetMonDom5,961 chainNetMonDom5,985 chainNetMonDom5,1006 cpgIslandExt,49 cpgIslandExt,194 cpgIslandExt,229 cpgIslandExt,406 cpgIslandExt,596 cpgIslandExtUnmasked,52 cpgIslandExtUnmasked,197 cpgIslandExtUnmasked,232 cpgIslandExtUnmasked,409 cpgIslandExtUnmasked,599 cpgIslandSuper,49 cpgIslandSuper,194 cpgIslandSuper,229 cpgIslandSuper,406 cpgIslandSuper,596 ensGene,22 est,265 est,493 est,661 est,739 gap,74 gap,124 gap,139 gc5Base,81 gold,74 intronEst,91 intronEst,346 intronEst,574 intronEst,742 intronEst,823 microsat,110 mrna,211 mrna,456 nestedRepeats,8 nestedRepeats,91 nestedRepeats,129 netBosTau7,110 netBosTau7,126 netBosTau7,314 netBosTau7,377 netBosTau7,414 netBosTau7,432 netBosTau7,810 netBosTau7,922 netBosTau7,941 netBosTau7,961 netBosTau7,985 netBosTau7,1006 netHg19,108 netHg19,124 netHg19,311 netHg19,374 netHg19,411 netHg19,429 netHg19,807 netHg19,919 netHg19,938 netHg19,958 netHg19,982 netHg19,1003 netMm9,108 netMm9,124 netMm9,311 netMm9,374 netMm9,411 netMm9,429 netMm9,807 netMm9,919 netMm9,938 netMm9,958 netMm9,982 netMm9,1003 netMonDom5,108 netMonDom5,124 netMonDom5,311 netMonDom5,374 netMonDom5,411 netMonDom5,429 netMonDom5,807 netMonDom5,919 netMonDom5,938 netMonDom5,958 netMonDom5,982 netMonDom5,1003 nscanGene,23 numtS,91 numtS,156 numtS,188 numtS,203 numtS,250 numtS,335 numtS,405 numtS,472 numtS,507 numtSAssembled,93 numtSAssembled,158 numtSAssembled,190 numtSAssembled,205 numtSAssembled,252 numtSAssembled,337 numtSAssembled,407 numtSAssembled,474 numtSAssembled,509 numtSMitochondrion,95 numtSMitochondrion,160 numtSMitochondrion,192 numtSMitochondrion,207 numtSMitochondrion,254 numtSMitochondrion,339 numtSMitochondrion,409 numtSMitochondrion,476 numtSMitochondrion,511 numtSeq2012,94 numtSeq2012,159 numtSeq2012,191 numtSeq2012,206 numtSeq2012,253 numtSeq2012,338 numtSeq2012,408 numtSeq2012,475 numtSeq2012,510 rmsk,4 rmsk,14 rmsk,50 simpleRepeat,6 simpleRepeat,22 simpleRepeat,70 tRNAs,20 tRNAs,335 tRNAs,347 tRNAs,490 xenoMrna,286 xenoMrna,531 xenoRefGene,100 xenoRefGene,105 xenoRefGene,169 xenoRefGene,187 xenoRefGene,193 xenoRefGene,289 xenoRefGene,294 c cpgIslandExt,44 cpgIslandExt,389 cpgIslandExtUnmasked,47 cpgIslandExtUnmasked,392 cpgIslandSuper,44 cpgIslandSuper,389 gc5Base,23 numtS,555 numtSAssembled,557 numtSMitochondrion,559 numtSeq2012,558 tRNAs,349 tRNAs,420 c-114100-125-31 chainBosTau7,672 chainHg19,669 chainMm9,669 chainMonDom5,669 chainNetBosTau7,675 chainNetHg19,672 chainNetMm9,672 chainNetMonDom5,672 netBosTau7,672 netHg19,669 netMm9,669 netMonDom5,669 caenorhabditis augustusGene,212 calabrese numtS,475 numtS,510 numtS,518 numtS,584 numtSAssembled,477 numtSAssembled,512 numtSAssembled,520 numtSAssembled,586 numtSMitochondrion,479 numtSMitochondrion,514 numtSMitochondrion,522 numtSMitochondrion,588 numtSeq2012,478 numtSeq2012,513 numtSeq2012,521 numtSeq2012,587 calculated cpgIslandExt,369 cpgIslandExtUnmasked,372 cpgIslandSuper,369 calculation cpgIslandExt,399 cpgIslandExtUnmasked,402 cpgIslandSuper,399 california chainBosTau7,957 chainBosTau7,1003 chainHg19,954 chainHg19,1000 chainMm9,954 chainMm9,1000 chainMonDom5,954 chainMonDom5,1000 chainNetBosTau7,960 chainNetBosTau7,1006 chainNetHg19,957 chainNetHg19,1003 chainNetMm9,957 chainNetMm9,1003 chainNetMonDom5,957 chainNetMonDom5,1003 netBosTau7,957 netBosTau7,1003 netHg19,954 netHg19,1000 netMm9,954 netMm9,1000 netMonDom5,954 netMonDom5,1000 cameron ensGene,181 can augustusGene,98 chainBosTau7,92 chainBosTau7,107 chainHg19,90 chainHg19,105 chainMm9,90 chainMm9,105 chainMonDom5,90 chainMonDom5,105 chainNetBosTau7,95 chainNetBosTau7,110 chainNetHg19,93 chainNetHg19,108 chainNetMm9,93 chainNetMm9,108 chainNetMonDom5,93 chainNetMonDom5,108 cpgIslandExt,512 cpgIslandExt,530 cpgIslandExt,560 cpgIslandExt,571 cpgIslandExtUnmasked,515 cpgIslandExtUnmasked,533 cpgIslandExtUnmasked,563 cpgIslandExtUnmasked,574 cpgIslandSuper,512 cpgIslandSuper,530 cpgIslandSuper,560 cpgIslandSuper,571 ensGene,67 ensGene,110 ensGene,144 est,118 est,249 intronEst,199 intronEst,330 mrna,64 mrna,195 netBosTau7,92 netBosTau7,107 netHg19,90 netHg19,105 netMm9,90 netMm9,105 netMonDom5,90 netMonDom5,105 numtS,59 numtSAssembled,61 numtSMitochondrion,63 numtSeq2012,62 rmsk,116 simpleRepeat,35 xenoMrna,139 xenoMrna,270 xenoRefGene,85 candidates tRNAs,51 tRNAs,57 canonical intronEst,68 cap-selected est,556 intronEst,637 cap-selection est,565 intronEst,646 carefully tRNAs,229 carried numtS,505 numtSAssembled,507 numtSMitochondrion,509 numtSeq2012,508 cases chainBosTau7,192 chainBosTau7,401 chainHg19,190 chainHg19,398 chainMm9,190 chainMm9,398 chainMonDom5,190 chainMonDom5,398 chainNetBosTau7,195 chainNetBosTau7,404 chainNetHg19,193 chainNetHg19,401 chainNetMm9,193 chainNetMm9,401 chainNetMonDom5,193 chainNetMonDom5,401 netBosTau7,192 netBosTau7,401 netHg19,190 netHg19,398 netMm9,190 netMm9,398 netMonDom5,190 netMonDom5,398 tRNAs,224 castellana numtS,548 numtSAssembled,550 numtSMitochondrion,552 numtSeq2012,551 categorized chainBosTau7,502 chainHg19,499 chainMm9,499 chainMonDom5,499 chainNetBosTau7,505 chainNetHg19,502 chainNetMm9,502 chainNetMonDom5,502 netBosTau7,502 netHg19,499 netMm9,499 netMonDom5,499 cauldron chainBosTau7,1055 chainHg19,1052 chainMm9,1052 chainMonDom5,1052 chainNetBosTau7,1058 chainNetHg19,1055 chainNetMm9,1055 chainNetMonDom5,1055 netBosTau7,1055 netHg19,1052 netMm9,1052 netMonDom5,1052 cause chainBosTau7,484 chainHg19,481 chainMm9,481 chainMonDom5,481 chainNetBosTau7,487 chainNetHg19,484 chainNetMm9,484 chainNetMonDom5,484 netBosTau7,484 netHg19,481 netMm9,481 netMonDom5,481 numtS,71 numtSAssembled,73 numtSMitochondrion,75 numtSeq2012,74 caused chainBosTau7,109 chainHg19,107 chainMm9,107 chainMonDom5,107 chainNetBosTau7,112 chainNetHg19,110 chainNetMm9,110 chainNetMonDom5,110 netBosTau7,109 netHg19,107 netMm9,107 netMonDom5,107 cavanaugh est,745 intronEst,829 mrna,462 xenoMrna,537 cd nscanGene,200 cdna augustusGene,299 est,458 est,461 intronEst,539 intronEst,542 cdnas nscanGene,113 cells est,453 intronEst,534 cerevisiae augustusGene,222 certain nestedRepeats,294 rmsk,301 cg cpgIslandExt,243 cpgIslandExt,281 cpgIslandExt,339 cpgIslandExtUnmasked,246 cpgIslandExtUnmasked,284 cpgIslandExtUnmasked,342 cpgIslandSuper,243 cpgIslandSuper,281 cpgIslandSuper,339 chain chainBosTau7,2 chainBosTau7,28 chainBosTau7,58 chainBosTau7,61 chainBosTau7,120 chainBosTau7,270 chainBosTau7,312 chainBosTau7,407 chainBosTau7,462 chainBosTau7,566 chainBosTau7,770 chainBosTau7,813 chainBosTau7,824 chainBosTau7,832 chainBosTau7,837 chainBosTau7,860 chainBosTau7,869 chainHg19,2 chainHg19,27 chainHg19,57 chainHg19,60 chainHg19,118 chainHg19,268 chainHg19,309 chainHg19,404 chainHg19,459 chainHg19,563 chainHg19,767 chainHg19,810 chainHg19,821 chainHg19,829 chainHg19,834 chainHg19,857 chainHg19,866 chainMm9,2 chainMm9,27 chainMm9,57 chainMm9,60 chainMm9,118 chainMm9,268 chainMm9,309 chainMm9,404 chainMm9,459 chainMm9,563 chainMm9,767 chainMm9,810 chainMm9,821 chainMm9,829 chainMm9,834 chainMm9,857 chainMm9,866 chainMonDom5,2 chainMonDom5,27 chainMonDom5,57 chainMonDom5,60 chainMonDom5,118 chainMonDom5,268 chainMonDom5,309 chainMonDom5,404 chainMonDom5,459 chainMonDom5,563 chainMonDom5,767 chainMonDom5,810 chainMonDom5,821 chainMonDom5,829 chainMonDom5,834 chainMonDom5,857 chainMonDom5,866 chainNetBosTau7,2 chainNetBosTau7,10 chainNetBosTau7,31 chainNetBosTau7,61 chainNetBosTau7,64 chainNetBosTau7,123 chainNetBosTau7,273 chainNetBosTau7,315 chainNetBosTau7,410 chainNetBosTau7,465 chainNetBosTau7,569 chainNetBosTau7,773 chainNetBosTau7,816 chainNetBosTau7,827 chainNetBosTau7,835 chainNetBosTau7,840 chainNetBosTau7,863 chainNetBosTau7,872 chainNetBosTau7Viewchain,1 chainNetBosTau7Viewchain,8 chainNetBosTau7Viewnet,8 chainNetHg19,2 chainNetHg19,9 chainNetHg19,30 chainNetHg19,60 chainNetHg19,63 chainNetHg19,121 chainNetHg19,271 chainNetHg19,312 chainNetHg19,407 chainNetHg19,462 chainNetHg19,566 chainNetHg19,770 chainNetHg19,813 chainNetHg19,824 chainNetHg19,832 chainNetHg19,837 chainNetHg19,860 chainNetHg19,869 chainNetHg19Viewchain,1 chainNetHg19Viewchain,7 chainNetHg19Viewnet,7 chainNetMm9,2 chainNetMm9,9 chainNetMm9,30 chainNetMm9,60 chainNetMm9,63 chainNetMm9,121 chainNetMm9,271 chainNetMm9,312 chainNetMm9,407 chainNetMm9,462 chainNetMm9,566 chainNetMm9,770 chainNetMm9,813 chainNetMm9,824 chainNetMm9,832 chainNetMm9,837 chainNetMm9,860 chainNetMm9,869 chainNetMm9Viewchain,1 chainNetMm9Viewchain,7 chainNetMm9Viewnet,7 chainNetMonDom5,2 chainNetMonDom5,9 chainNetMonDom5,30 chainNetMonDom5,60 chainNetMonDom5,63 chainNetMonDom5,121 chainNetMonDom5,271 chainNetMonDom5,312 chainNetMonDom5,407 chainNetMonDom5,462 chainNetMonDom5,566 chainNetMonDom5,770 chainNetMonDom5,813 chainNetMonDom5,824 chainNetMonDom5,832 chainNetMonDom5,837 chainNetMonDom5,860 chainNetMonDom5,869 chainNetMonDom5Viewchain,1 chainNetMonDom5Viewchain,7 chainNetMonDom5Viewnet,7 netBosTau7,28 netBosTau7,58 netBosTau7,61 netBosTau7,120 netBosTau7,270 netBosTau7,312 netBosTau7,407 netBosTau7,462 netBosTau7,566 netBosTau7,770 netBosTau7,813 netBosTau7,824 netBosTau7,832 netBosTau7,837 netBosTau7,860 netBosTau7,869 netHg19,27 netHg19,57 netHg19,60 netHg19,118 netHg19,268 netHg19,309 netHg19,404 netHg19,459 netHg19,563 netHg19,767 netHg19,810 netHg19,821 netHg19,829 netHg19,834 netHg19,857 netHg19,866 netMm9,27 netMm9,57 netMm9,60 netMm9,118 netMm9,268 netMm9,309 netMm9,404 netMm9,459 netMm9,563 netMm9,767 netMm9,810 netMm9,821 netMm9,829 netMm9,834 netMm9,857 netMm9,866 netMonDom5,27 netMonDom5,57 netMonDom5,60 netMonDom5,118 netMonDom5,268 netMonDom5,309 netMonDom5,404 netMonDom5,459 netMonDom5,563 netMonDom5,767 netMonDom5,810 netMonDom5,821 netMonDom5,829 netMonDom5,834 netMonDom5,857 netMonDom5,866 chained blastHg18KG,7 blastHg18KG,86 chainBosTau7,9 chainHg19,8 chainMm9,8 chainMonDom5,8 chainnet chainBosTau7,787 chainBosTau7,992 chainHg19,784 chainHg19,989 chainMm9,784 chainMm9,989 chainMonDom5,784 chainMonDom5,989 chainNetBosTau7,790 chainNetBosTau7,995 chainNetHg19,787 chainNetHg19,992 chainNetMm9,787 chainNetMm9,992 chainNetMonDom5,787 chainNetMonDom5,992 netBosTau7,787 netBosTau7,992 netHg19,784 netHg19,989 netMm9,784 netMm9,989 netMonDom5,784 netMonDom5,989 chains blastHg18KG,102 blastHg18KG,115 chainBosTau7,195 chainBosTau7,206 chainBosTau7,217 chainBosTau7,317 chainBosTau7,356 chainBosTau7,389 chainBosTau7,394 chainBosTau7,416 chainBosTau7,428 chainBosTau7,435 chainBosTau7,492 chainBosTau7,660 chainBosTau7,675 chainBosTau7,689 chainBosTau7,758 chainBosTau7,779 chainBosTau7,794 chainBosTau7,854 chainBosTau7,885 chainBosTau7,980 chainHg19,193 chainHg19,204 chainHg19,215 chainHg19,314 chainHg19,353 chainHg19,386 chainHg19,391 chainHg19,413 chainHg19,425 chainHg19,432 chainHg19,489 chainHg19,657 chainHg19,672 chainHg19,686 chainHg19,755 chainHg19,776 chainHg19,791 chainHg19,851 chainHg19,882 chainHg19,977 chainMm9,193 chainMm9,204 chainMm9,215 chainMm9,314 chainMm9,353 chainMm9,386 chainMm9,391 chainMm9,413 chainMm9,425 chainMm9,432 chainMm9,489 chainMm9,657 chainMm9,672 chainMm9,686 chainMm9,755 chainMm9,776 chainMm9,791 chainMm9,851 chainMm9,882 chainMm9,977 chainMonDom5,193 chainMonDom5,204 chainMonDom5,215 chainMonDom5,314 chainMonDom5,353 chainMonDom5,386 chainMonDom5,391 chainMonDom5,413 chainMonDom5,425 chainMonDom5,432 chainMonDom5,489 chainMonDom5,657 chainMonDom5,672 chainMonDom5,686 chainMonDom5,755 chainMonDom5,776 chainMonDom5,791 chainMonDom5,851 chainMonDom5,882 chainMonDom5,977 chainNetBosTau7,198 chainNetBosTau7,209 chainNetBosTau7,220 chainNetBosTau7,320 chainNetBosTau7,359 chainNetBosTau7,392 chainNetBosTau7,397 chainNetBosTau7,419 chainNetBosTau7,431 chainNetBosTau7,438 chainNetBosTau7,495 chainNetBosTau7,663 chainNetBosTau7,678 chainNetBosTau7,692 chainNetBosTau7,761 chainNetBosTau7,782 chainNetBosTau7,797 chainNetBosTau7,857 chainNetBosTau7,888 chainNetBosTau7,983 chainNetHg19,196 chainNetHg19,207 chainNetHg19,218 chainNetHg19,317 chainNetHg19,356 chainNetHg19,389 chainNetHg19,394 chainNetHg19,416 chainNetHg19,428 chainNetHg19,435 chainNetHg19,492 chainNetHg19,660 chainNetHg19,675 chainNetHg19,689 chainNetHg19,758 chainNetHg19,779 chainNetHg19,794 chainNetHg19,854 chainNetHg19,885 chainNetHg19,980 chainNetMm9,196 chainNetMm9,207 chainNetMm9,218 chainNetMm9,317 chainNetMm9,356 chainNetMm9,389 chainNetMm9,394 chainNetMm9,416 chainNetMm9,428 chainNetMm9,435 chainNetMm9,492 chainNetMm9,660 chainNetMm9,675 chainNetMm9,689 chainNetMm9,758 chainNetMm9,779 chainNetMm9,794 chainNetMm9,854 chainNetMm9,885 chainNetMm9,980 chainNetMonDom5,196 chainNetMonDom5,207 chainNetMonDom5,218 chainNetMonDom5,317 chainNetMonDom5,356 chainNetMonDom5,389 chainNetMonDom5,394 chainNetMonDom5,416 chainNetMonDom5,428 chainNetMonDom5,435 chainNetMonDom5,492 chainNetMonDom5,660 chainNetMonDom5,675 chainNetMonDom5,689 chainNetMonDom5,758 chainNetMonDom5,779 chainNetMonDom5,794 chainNetMonDom5,854 chainNetMonDom5,885 chainNetMonDom5,980 netBosTau7,195 netBosTau7,206 netBosTau7,217 netBosTau7,317 netBosTau7,356 netBosTau7,389 netBosTau7,394 netBosTau7,416 netBosTau7,428 netBosTau7,435 netBosTau7,492 netBosTau7,660 netBosTau7,675 netBosTau7,689 netBosTau7,758 netBosTau7,779 netBosTau7,794 netBosTau7,854 netBosTau7,885 netBosTau7,980 netHg19,193 netHg19,204 netHg19,215 netHg19,314 netHg19,353 netHg19,386 netHg19,391 netHg19,413 netHg19,425 netHg19,432 netHg19,489 netHg19,657 netHg19,672 netHg19,686 netHg19,755 netHg19,776 netHg19,791 netHg19,851 netHg19,882 netHg19,977 netMm9,193 netMm9,204 netMm9,215 netMm9,314 netMm9,353 netMm9,386 netMm9,391 netMm9,413 netMm9,425 netMm9,432 netMm9,489 netMm9,657 netMm9,672 netMm9,686 netMm9,755 netMm9,776 netMm9,791 netMm9,851 netMm9,882 netMm9,977 netMonDom5,193 netMonDom5,204 netMonDom5,215 netMonDom5,314 netMonDom5,353 netMonDom5,386 netMonDom5,391 netMonDom5,413 netMonDom5,425 netMonDom5,432 netMonDom5,489 netMonDom5,657 netMonDom5,672 netMonDom5,686 netMonDom5,755 netMonDom5,776 netMonDom5,791 netMonDom5,851 netMonDom5,882 netMonDom5,977 chaired numtS,90 numtSAssembled,92 numtSMitochondrion,94 numtSeq2012,93 chan tRNAs,366 change cpgIslandExt,210 cpgIslandExtUnmasked,213 cpgIslandSuper,210 est,122 intronEst,203 mrna,68 xenoMrna,143 changed rmsk,285 characteristic est,327 intronEst,408 mrna,273 xenoMrna,348 check chainBosTau7,339 chainHg19,336 chainMm9,336 chainMonDom5,336 chainNetBosTau7,342 chainNetHg19,339 chainNetMm9,339 chainNetMonDom5,339 netBosTau7,339 netHg19,336 netMm9,336 netMonDom5,336 chen ensGene,183 chiaromonte chainBosTau7,1025 chainHg19,1022 chainMm9,1022 chainMonDom5,1022 chainNetBosTau7,1028 chainNetHg19,1025 chainNetMm9,1025 chainNetMonDom5,1025 netBosTau7,1025 netHg19,1022 netMm9,1022 netMonDom5,1022 chicken augustusGene,204 augustusGene,262 choose augustusGene,171 cpgIslandExt,581 cpgIslandExtUnmasked,584 cpgIslandSuper,581 est,283 est,322 intronEst,364 intronEst,403 mrna,229 mrna,268 xenoMrna,304 xenoMrna,343 chosen est,345 intronEst,426 mrna,291 xenoMrna,366 chr ctgPos2,22 chr4 chainBosTau7,371 chainHg19,368 chainMm9,368 chainMonDom5,368 chainNetBosTau7,374 chainNetHg19,371 chainNetMm9,371 chainNetMonDom5,371 netBosTau7,371 netHg19,368 netMm9,368 netMonDom5,368 chrm numtSMitochondrion,3 chromosome chainBosTau7,247 chainBosTau7,326 chainBosTau7,351 chainBosTau7,359 chainBosTau7,369 chainBosTau7,378 chainBosTau7,525 chainBosTau7,540 chainBosTau7,556 chainBosTau7,624 chainBosTau7,629 chainHg19,245 chainHg19,323 chainHg19,348 chainHg19,356 chainHg19,366 chainHg19,375 chainHg19,522 chainHg19,537 chainHg19,553 chainHg19,621 chainHg19,626 chainMm9,245 chainMm9,323 chainMm9,348 chainMm9,356 chainMm9,366 chainMm9,375 chainMm9,522 chainMm9,537 chainMm9,553 chainMm9,621 chainMm9,626 chainMonDom5,245 chainMonDom5,323 chainMonDom5,348 chainMonDom5,356 chainMonDom5,366 chainMonDom5,375 chainMonDom5,522 chainMonDom5,537 chainMonDom5,553 chainMonDom5,621 chainMonDom5,626 chainNetBosTau7,250 chainNetBosTau7,329 chainNetBosTau7,354 chainNetBosTau7,362 chainNetBosTau7,372 chainNetBosTau7,381 chainNetBosTau7,528 chainNetBosTau7,543 chainNetBosTau7,559 chainNetBosTau7,627 chainNetBosTau7,632 chainNetHg19,248 chainNetHg19,326 chainNetHg19,351 chainNetHg19,359 chainNetHg19,369 chainNetHg19,378 chainNetHg19,525 chainNetHg19,540 chainNetHg19,556 chainNetHg19,624 chainNetHg19,629 chainNetMm9,248 chainNetMm9,326 chainNetMm9,351 chainNetMm9,359 chainNetMm9,369 chainNetMm9,378 chainNetMm9,525 chainNetMm9,540 chainNetMm9,556 chainNetMm9,624 chainNetMm9,629 chainNetMonDom5,248 chainNetMonDom5,326 chainNetMonDom5,351 chainNetMonDom5,359 chainNetMonDom5,369 chainNetMonDom5,378 chainNetMonDom5,525 chainNetMonDom5,540 chainNetMonDom5,556 chainNetMonDom5,624 chainNetMonDom5,629 gold,69 gold,108 netBosTau7,247 netBosTau7,326 netBosTau7,351 netBosTau7,359 netBosTau7,369 netBosTau7,378 netBosTau7,525 netBosTau7,540 netBosTau7,556 netBosTau7,624 netBosTau7,629 netHg19,245 netHg19,323 netHg19,348 netHg19,356 netHg19,366 netHg19,375 netHg19,522 netHg19,537 netHg19,553 netHg19,621 netHg19,626 netMm9,245 netMm9,323 netMm9,348 netMm9,356 netMm9,366 netMm9,375 netMm9,522 netMm9,537 netMm9,553 netMm9,621 netMm9,626 netMonDom5,245 netMonDom5,323 netMonDom5,348 netMonDom5,356 netMonDom5,366 netMonDom5,375 netMonDom5,522 netMonDom5,537 netMonDom5,553 netMonDom5,621 netMonDom5,626 numtS,412 numtSAssembled,414 numtSMitochondrion,416 numtSeq2012,415 chromosome-based chainBosTau7,319 chainHg19,316 chainMm9,316 chainMonDom5,316 chainNetBosTau7,322 chainNetHg19,319 chainNetMm9,319 chainNetMonDom5,319 netBosTau7,319 netHg19,316 netMm9,316 netMonDom5,316 chromosomes numtS,53 numtSAssembled,55 numtSMitochondrion,57 numtSeq2012,56 circle rmsk,202 cite tRNAs,362 cited cpgIslandExt,374 cpgIslandExtUnmasked,377 cpgIslandSuper,374 clark ensGene,185 est,747 intronEst,831 mrna,464 xenoMrna,539 class rmsk,199 rmsk,253 classes rmsk,150 classification rmsk,266 rmsk,282 clawson gc5Base,83 click chainBosTau7,452 chainBosTau7,466 chainHg19,449 chainHg19,463 chainMm9,449 chainMm9,463 chainMonDom5,449 chainMonDom5,463 chainNetBosTau7,455 chainNetBosTau7,469 chainNetHg19,452 chainNetHg19,466 chainNetMm9,452 chainNetMm9,466 chainNetMonDom5,452 chainNetMonDom5,466 gc5Base,56 netBosTau7,452 netBosTau7,466 netHg19,449 netHg19,463 netMm9,449 netMm9,463 netMonDom5,449 netMonDom5,463 xenoRefGene,108 xenoRefGene,212 clipped nestedRepeats,224 clone gap,110 gap,134 cloned est,463 intronEst,544 clones gap,113 closed gap,43 closest augustusGene,241 cloverleaf tRNAs,312 clusters nscanGene,110 cm nscanGene,196 xenoRefGene,330 coding simpleRepeat,38 xenoRefGene,210 codon mrna,329 mrna,354 xenoMrna,404 xenoMrna,429 xenoRefGene,136 xenoRefGene,143 xenoRefGene,158 xenoRefGene,188 codons xenoRefGene,163 xenoRefGene,170 collapsed nestedRepeats,173 collection xenoRefGene,31 color chainBosTau7,347 chainHg19,344 chainMm9,344 chainMonDom5,344 chainNetBosTau7,350 chainNetHg19,347 chainNetMm9,347 chainNetMonDom5,347 est,128 est,324 intronEst,209 intronEst,405 mrna,74 mrna,270 netBosTau7,347 netHg19,344 netMm9,344 netMonDom5,344 rmsk,207 xenoMrna,149 xenoMrna,345 xenoRefGene,56 xenoRefGene,167 coloration gold,82 colored chainBosTau7,322 chainHg19,319 chainMm9,319 chainMonDom5,319 chainNetBosTau7,325 chainNetHg19,322 chainNetMm9,322 chainNetMonDom5,322 est,431 intronEst,512 mrna,370 netBosTau7,322 netHg19,319 netMm9,319 netMonDom5,319 xenoMrna,445 coloring chainBosTau7,338 chainHg19,335 chainMm9,335 chainMonDom5,335 chainNetBosTau7,341 chainNetHg19,338 chainNetMm9,338 chainNetMonDom5,338 est,418 intronEst,499 mrna,330 mrna,357 netBosTau7,338 netHg19,335 netMm9,335 netMonDom5,335 xenoMrna,405 xenoMrna,432 xenoRefGene,137 xenoRefGene,144 xenoRefGene,182 colors xenoRefGene,79 xenoRefGene,159 column nestedRepeats,107 combination est,286 intronEst,367 mrna,232 xenoMrna,307 combinations xenoMrna,118 combined gold,42 rmsk,232 combines nscanGene,38 command cpgIslandExt,409 cpgIslandExt,503 cpgIslandExtUnmasked,412 cpgIslandExtUnmasked,506 cpgIslandSuper,409 cpgIslandSuper,503 common cpgIslandExt,30 cpgIslandExtUnmasked,33 cpgIslandSuper,30 community numtS,114 numtSAssembled,116 numtSMitochondrion,118 numtSeq2012,117 comparative chainBosTau7,11 chainHg19,10 chainMm9,10 chainMonDom5,10 chainNetBosTau7,14 chainNetBosTau7Viewchain,12 chainNetBosTau7Viewnet,12 chainNetHg19,13 chainNetHg19Viewchain,11 chainNetHg19Viewnet,11 chainNetMm9,13 chainNetMm9Viewchain,11 chainNetMm9Viewnet,11 chainNetMonDom5,13 chainNetMonDom5Viewchain,11 chainNetMonDom5Viewnet,11 netBosTau7,11 netHg19,10 netMm9,10 netMonDom5,10 numtS,123 numtSAssembled,125 numtSMitochondrion,127 numtSeq2012,126 compare mrna,339 xenoMrna,414 xenoRefGene,153 comparison numtS,390 numtSAssembled,392 numtSMitochondrion,394 numtSeq2012,393 compilation numtS,105 numtS,118 numtS,560 numtS,598 numtSAssembled,107 numtSAssembled,120 numtSAssembled,562 numtSAssembled,600 numtSMitochondrion,109 numtSMitochondrion,122 numtSMitochondrion,564 numtSMitochondrion,602 numtSeq2012,108 numtSeq2012,121 numtSeq2012,563 numtSeq2012,601 completely xenoRefGene,135 complex chainBosTau7,163 chainHg19,161 chainMm9,161 chainMonDom5,161 chainNetBosTau7,166 chainNetHg19,164 chainNetMm9,164 chainNetMonDom5,164 netBosTau7,163 netHg19,161 netMm9,161 netMonDom5,161 complexity nestedRepeats,40 rmsk,30 rmsk,182 components ctgPos2,24 gold,123 comput nscanGene,171 computational nscanGene,25 nscanGene,120 concerning numtS,27 numtSAssembled,29 numtSMitochondrion,31 numtSeq2012,30 concordant numtS,212 numtS,269 numtS,344 numtSAssembled,214 numtSAssembled,271 numtSAssembled,346 numtSMitochondrion,216 numtSMitochondrion,273 numtSMitochondrion,348 numtSeq2012,215 numtSeq2012,272 numtSeq2012,347 condition numtS,295 numtSAssembled,297 numtSMitochondrion,299 numtSeq2012,298 conditional augustusGene,118 conditions numtS,40 numtS,261 numtSAssembled,42 numtSAssembled,263 numtSMitochondrion,44 numtSMitochondrion,265 numtSeq2012,43 numtSeq2012,264 configuration chainBosTau7,311 chainHg19,308 chainMm9,308 chainMonDom5,308 chainNetBosTau7,314 chainNetHg19,311 chainNetMm9,311 chainNetMonDom5,311 est,46 gc5Base,60 gc5Base,69 intronEst,130 mrna,27 nestedRepeats,114 netBosTau7,311 netHg19,308 netMm9,308 netMonDom5,308 rmsk,138 xenoMrna,32 xenoRefGene,44 configured est,380 gc5Base,42 intronEst,461 mrna,326 xenoMrna,401 xenoRefGene,87 considerable est,637 intronEst,718 considered intronEst,57 constructed cpgIslandExt,322 cpgIslandExt,495 cpgIslandExtUnmasked,325 cpgIslandExtUnmasked,498 cpgIslandSuper,322 cpgIslandSuper,495 construction cpgIslandExt,311 cpgIslandExtUnmasked,314 cpgIslandSuper,311 consult est,217 intronEst,298 mrna,163 xenoMrna,238 contained chainBosTau7,886 chainHg19,883 chainMm9,883 chainMonDom5,883 chainNetBosTau7,889 chainNetHg19,886 chainNetMm9,886 chainNetMonDom5,886 netBosTau7,886 netHg19,883 netMm9,883 netMonDom5,883 contains blastHg18KG,16 est,242 gap,98 intronEst,323 mrna,188 xenoMrna,263 xenoRefGene,140 contamination est,625 intronEst,97 intronEst,706 numtS,73 numtSAssembled,75 numtSMitochondrion,77 numtSeq2012,76 content augustusGene,71 cpgIslandExt,263 cpgIslandExtUnmasked,266 cpgIslandSuper,263 gc5Base,31 conterio tRNAs,472 context-dependent nscanGene,93 contig gap,131 gold,70 contigs gap,65 gap,109 gap,135 gold,41 gold,62 gold,87 gold,105 control tRNAs,498 controls cpgIslandExt,217 cpgIslandExtUnmasked,220 cpgIslandSuper,217 xenoRefGene,90 conventions chainBosTau7,309 chainHg19,306 chainMm9,306 chainMonDom5,306 chainNetBosTau7,312 chainNetHg19,309 chainNetMm9,309 chainNetMonDom5,309 est,44 est,52 intronEst,128 intronEst,136 mrna,25 mrna,33 nestedRepeats,112 netBosTau7,309 netHg19,306 netMm9,306 netMonDom5,306 numtS,10 numtSAssembled,12 numtSMitochondrion,14 numtSeq2012,13 rmsk,136 xenoMrna,30 xenoMrna,38 xenoRefGene,42 xenoRefGene,50 converted chainBosTau7,601 chainHg19,598 chainMm9,598 chainMonDom5,598 chainNetBosTau7,604 chainNetHg19,601 chainNetMm9,601 chainNetMonDom5,601 netBosTau7,601 netHg19,598 netMm9,598 netMonDom5,598 copies microsat,80 corresponds est,225 intronEst,306 mrna,171 xenoMrna,246 count cpgIslandExt,334 cpgIslandExt,357 cpgIslandExtUnmasked,337 cpgIslandExtUnmasked,360 cpgIslandSuper,334 cpgIslandSuper,357 covariance tRNAs,60 tRNAs,402 cove tRNAs,64 cove-predicted tRNAs,341 cover est,558 intronEst,639 covered chainBosTau7,809 chainHg19,806 chainMm9,806 chainMonDom5,806 chainNetBosTau7,812 chainNetHg19,809 chainNetMm9,809 chainNetMonDom5,809 netBosTau7,809 netHg19,806 netMm9,806 netMonDom5,806 cow chainBosTau7,1 chainBosTau7,3 chainBosTau7,66 chainBosTau7,98 chainBosTau7,150 chainBosTau7,268 chainBosTau7,293 chainBosTau7,575 chainBosTau7,623 chainNetBosTau7,1 chainNetBosTau7,4 chainNetBosTau7,69 chainNetBosTau7,101 chainNetBosTau7,153 chainNetBosTau7,271 chainNetBosTau7,296 chainNetBosTau7,578 chainNetBosTau7,626 chainNetBosTau7Viewchain,2 chainNetBosTau7Viewnet,2 netBosTau7,1 netBosTau7,3 netBosTau7,66 netBosTau7,98 netBosTau7,150 netBosTau7,268 netBosTau7,293 netBosTau7,575 netBosTau7,623 cox ensGene,187 cpg cpgIslandExt,1 cpgIslandExt,3 cpgIslandExt,15 cpgIslandExt,26 cpgIslandExt,55 cpgIslandExt,147 cpgIslandExt,176 cpgIslandExt,225 cpgIslandExt,316 cpgIslandExt,319 cpgIslandExt,333 cpgIslandExt,346 cpgIslandExt,351 cpgIslandExt,356 cpgIslandExt,367 cpgIslandExt,382 cpgIslandExt,385 cpgIslandExt,506 cpgIslandExt,608 cpgIslandExtUnmasked,2 cpgIslandExtUnmasked,3 cpgIslandExtUnmasked,18 cpgIslandExtUnmasked,29 cpgIslandExtUnmasked,58 cpgIslandExtUnmasked,150 cpgIslandExtUnmasked,179 cpgIslandExtUnmasked,228 cpgIslandExtUnmasked,319 cpgIslandExtUnmasked,322 cpgIslandExtUnmasked,336 cpgIslandExtUnmasked,349 cpgIslandExtUnmasked,354 cpgIslandExtUnmasked,359 cpgIslandExtUnmasked,370 cpgIslandExtUnmasked,385 cpgIslandExtUnmasked,388 cpgIslandExtUnmasked,509 cpgIslandExtUnmasked,611 cpgIslandSuper,1 cpgIslandSuper,3 cpgIslandSuper,15 cpgIslandSuper,26 cpgIslandSuper,55 cpgIslandSuper,147 cpgIslandSuper,176 cpgIslandSuper,225 cpgIslandSuper,316 cpgIslandSuper,319 cpgIslandSuper,333 cpgIslandSuper,346 cpgIslandSuper,351 cpgIslandSuper,356 cpgIslandSuper,367 cpgIslandSuper,382 cpgIslandSuper,385 cpgIslandSuper,506 cpgIslandSuper,608 cpg_lh cpgIslandExt,418 cpgIslandExt,558 cpgIslandExt,568 cpgIslandExt,580 cpgIslandExtUnmasked,421 cpgIslandExtUnmasked,561 cpgIslandExtUnmasked,571 cpgIslandExtUnmasked,583 cpgIslandSuper,418 cpgIslandSuper,558 cpgIslandSuper,568 cpgIslandSuper,580 cpg_lh.err cpgIslandExt,423 cpgIslandExtUnmasked,426 cpgIslandSuper,423 cpgisland.bed cpgIslandExt,489 cpgIslandExtUnmasked,492 cpgIslandSuper,489 cpgislandext cpgIslandExt,566 cpgIslandExtUnmasked,569 cpgIslandSuper,566 cpgs cpgIslandExt,115 cpgIslandExt,152 cpgIslandExtUnmasked,118 cpgIslandExtUnmasked,155 cpgIslandSuper,115 cpgIslandSuper,152 created chainBosTau7,984 chainHg19,981 chainMm9,981 chainMonDom5,981 chainNetBosTau7,987 chainNetHg19,984 chainNetMm9,984 chainNetMonDom5,984 microsat,89 netBosTau7,984 netHg19,981 netMm9,981 netMonDom5,981 rmsk,13 creates chainBosTau7,634 chainHg19,631 chainMm9,631 chainMonDom5,631 chainNetBosTau7,637 chainNetHg19,634 chainNetMm9,634 chainNetMonDom5,634 netBosTau7,634 netHg19,631 netMm9,631 netMonDom5,631 credited numtS,25 numtSAssembled,27 numtSMitochondrion,29 numtSeq2012,28 credits augustusGene,247 blastHg18KG,137 chainBosTau7,910 chainHg19,907 chainMm9,907 chainMonDom5,907 chainNetBosTau7,913 chainNetHg19,910 chainNetMm9,910 chainNetMonDom5,910 cpgIslandExt,584 cpgIslandExtUnmasked,587 cpgIslandSuper,584 ensGene,152 est,721 gc5Base,71 intronEst,805 microsat,104 mrna,437 nestedRepeats,302 netBosTau7,910 netHg19,907 netMm9,907 netMonDom5,907 nscanGene,114 numtS,467 numtSAssembled,469 numtSMitochondrion,471 numtSeq2012,470 rmsk,325 simpleRepeat,66 tRNAs,328 xenoMrna,512 xenoRefGene,277 criteria cpgIslandExt,261 cpgIslandExtUnmasked,264 cpgIslandSuper,261 est,300 est,318 est,356 est,374 intronEst,381 intronEst,399 intronEst,437 intronEst,455 mrna,246 mrna,264 mrna,302 mrna,320 xenoMrna,321 xenoMrna,339 xenoMrna,377 xenoMrna,395 cross numtS,234 numtSAssembled,236 numtSMitochondrion,238 numtSeq2012,237 cruz chainBosTau7,960 chainBosTau7,1005 chainHg19,957 chainHg19,1002 chainMm9,957 chainMm9,1002 chainMonDom5,957 chainMonDom5,1002 chainNetBosTau7,963 chainNetBosTau7,1008 chainNetHg19,960 chainNetHg19,1005 chainNetMm9,960 chainNetMm9,1005 chainNetMonDom5,960 chainNetMonDom5,1005 netBosTau7,960 netBosTau7,1005 netHg19,957 netHg19,1002 netMm9,957 netMm9,1002 netMonDom5,957 netMonDom5,1002 cs cpgIslandExt,63 cpgIslandExt,101 cpgIslandExt,296 cpgIslandExtUnmasked,66 cpgIslandExtUnmasked,104 cpgIslandExtUnmasked,299 cpgIslandSuper,63 cpgIslandSuper,101 cpgIslandSuper,296 cuff ensGene,189 culex augustusGene,220 curated xenoRefGene,293 xenoRefGene,370 curator rmsk,261 curr nestedRepeats,384 nestedRepeats,406 rmsk,407 rmsk,429 current est,160 intronEst,241 mrna,106 nestedRepeats,250 xenoMrna,181 currently gold,67 nscanGene,149 curwen ensGene,191 cytosine cpgIslandExt,45 cpgIslandExtUnmasked,48 cpgIslandSuper,45 gc5Base,24 d augustusGene,293 chainBosTau7,1052 chainBosTau7,1096 chainHg19,1049 chainHg19,1093 chainMm9,1049 chainMm9,1093 chainMonDom5,1049 chainMonDom5,1093 chainNetBosTau7,1055 chainNetBosTau7,1099 chainNetHg19,1052 chainNetHg19,1096 chainNetMm9,1052 chainNetMm9,1096 chainNetMonDom5,1052 chainNetMonDom5,1096 cpgIslandExt,438 cpgIslandExtUnmasked,441 cpgIslandSuper,438 ctgPos2,37 ensGene,178 gold,136 netBosTau7,1052 netBosTau7,1096 netHg19,1049 netHg19,1093 netMm9,1049 netMm9,1093 netMonDom5,1049 netMonDom5,1093 nscanGene,231 numtS,521 numtS,547 numtS,583 numtSAssembled,523 numtSAssembled,549 numtSAssembled,585 numtSMitochondrion,525 numtSMitochondrion,551 numtSMitochondrion,587 numtSeq2012,524 numtSeq2012,550 numtSeq2012,586 d23-6 est,792 intronEst,876 mrna,509 xenoMrna,584 d36-42 est,766 intronEst,850 mrna,483 xenoMrna,558 d501-4 xenoRefGene,388 d756-63 xenoRefGene,354 d93-7 tRNAs,389 da est,744 est,772 intronEst,828 intronEst,856 mrna,461 mrna,489 xenoMrna,536 xenoMrna,564 dario numtS,476 numtS,511 numtSAssembled,478 numtSAssembled,513 numtSMitochondrion,480 numtSMitochondrion,515 numtSeq2012,479 numtSeq2012,514 dark xenoRefGene,73 darker intronEst,145 darkly est,66 mrna,47 xenoMrna,52 data cpgIslandExt,403 cpgIslandExt,493 cpgIslandExt,504 cpgIslandExt,525 cpgIslandExtUnmasked,406 cpgIslandExtUnmasked,496 cpgIslandExtUnmasked,507 cpgIslandExtUnmasked,528 cpgIslandSuper,403 cpgIslandSuper,493 cpgIslandSuper,504 cpgIslandSuper,525 ensGene,62 ensGene,66 ensGene,77 ensGene,109 est,731 gap,77 gc5Base,73 intronEst,815 microsat,47 mrna,448 nestedRepeats,263 nestedRepeats,280 nscanGene,131 numtS,129 numtS,469 numtSAssembled,131 numtSAssembled,471 numtSMitochondrion,133 numtSMitochondrion,473 numtSeq2012,132 numtSeq2012,472 rmsk,126 rmsk,287 tRNAs,360 xenoMrna,523 xenoRefGene,34 xenoRefGene,287 database chainBosTau7,976 chainHg19,973 chainMm9,973 chainMonDom5,973 chainNetBosTau7,979 chainNetHg19,976 chainNetMm9,976 chainNetMonDom5,976 ensGene,200 est,764 est,790 intronEst,848 intronEst,874 mrna,481 mrna,507 nestedRepeats,345 netBosTau7,976 netHg19,973 netMm9,973 netMonDom5,973 rmsk,125 rmsk,368 tRNAs,110 tRNAs,372 tRNAs,387 xenoMrna,556 xenoMrna,582 xenoRefGene,352 xenoRefGene,373 xenoRefGene,386 databases est,612 est,738 intronEst,101 intronEst,693 intronEst,822 mrna,455 tRNAs,489 xenoMrna,530 david chainBosTau7,970 chainHg19,967 chainMm9,967 chainMonDom5,967 chainNetBosTau7,973 chainNetHg19,970 chainNetMm9,970 chainNetMonDom5,970 netBosTau7,970 netHg19,967 netMm9,967 netMonDom5,967 db nscanGene,198 de augustusGene,303 nscanGene,55 deamination cpgIslandExt,110 cpgIslandExtUnmasked,113 cpgIslandSuper,110 dec nestedRepeats,389 nestedRepeats,411 rmsk,412 rmsk,434 default chainBosTau7,315 chainHg19,312 chainMm9,312 chainMonDom5,312 chainNetBosTau7,318 chainNetHg19,315 chainNetMm9,315 chainNetMonDom5,315 cpgIslandExt,195 cpgIslandExtUnmasked,198 cpgIslandSuper,195 netBosTau7,315 netHg19,312 netMm9,312 netMonDom5,312 xenoRefGene,101 xenoRefGene,194 definition gap,162 degraded est,527 intronEst,608 degree est,622 intronEst,703 delcher nscanGene,182 deletion chainBosTau7,147 chainBosTau7,1057 chainHg19,145 chainHg19,1054 chainMm9,145 chainMm9,1054 chainMonDom5,145 chainMonDom5,1054 chainNetBosTau7,150 chainNetBosTau7,1060 chainNetHg19,148 chainNetHg19,1057 chainNetMm9,148 chainNetMm9,1057 chainNetMonDom5,148 chainNetMonDom5,1057 est,440 intronEst,521 mrna,379 netBosTau7,147 netBosTau7,1057 netHg19,145 netHg19,1054 netMm9,145 netMm9,1054 netMonDom5,145 netMonDom5,1054 rmsk,220 xenoMrna,454 deletions chainBosTau7,115 chainBosTau7,178 chainHg19,113 chainHg19,176 chainMm9,113 chainMm9,176 chainMonDom5,113 chainMonDom5,176 chainNetBosTau7,118 chainNetBosTau7,181 chainNetHg19,116 chainNetHg19,179 chainNetMm9,116 chainNetMm9,179 chainNetMonDom5,116 chainNetMonDom5,179 netBosTau7,115 netBosTau7,178 netHg19,113 netHg19,176 netMm9,113 netMm9,176 netMonDom5,113 netMonDom5,176 nscanGene,98 dense est,58 gold,56 intronEst,142 mrna,39 nestedRepeats,157 nestedRepeats,168 xenoMrna,44 department numtS,486 numtSAssembled,488 numtSMitochondrion,490 numtSeq2012,489 depicts gap,10 gold,11 gold,60 deposited est,599 intronEst,680 derive numtS,61 numtSAssembled,63 numtSMitochondrion,65 numtSeq2012,64 derived chainBosTau7,760 chainHg19,757 chainMm9,757 chainMonDom5,757 chainNetBosTau7,763 chainNetHg19,760 chainNetMm9,760 chainNetMonDom5,760 netBosTau7,760 netHg19,757 netMm9,757 netMonDom5,757 numtS,388 numtSAssembled,390 numtSMitochondrion,392 numtSeq2012,391 tRNAs,129 described chainBosTau7,767 chainHg19,764 chainMm9,764 chainMonDom5,764 chainNetBosTau7,770 chainNetHg19,767 chainNetMm9,767 chainNetMonDom5,767 nestedRepeats,60 nestedRepeats,338 netBosTau7,767 netHg19,764 netMm9,764 netMonDom5,764 numtS,138 numtSAssembled,140 numtSMitochondrion,142 numtSeq2012,141 rmsk,96 rmsk,361 describes augustusGene,226 description augustusGene,12 blastHg18KG,13 chainBosTau7,13 chainBosTau7,772 chainHg19,12 chainHg19,769 chainMm9,12 chainMm9,769 chainMonDom5,12 chainMonDom5,769 chainNetBosTau7,16 chainNetBosTau7,775 chainNetHg19,15 chainNetHg19,772 chainNetMm9,15 chainNetMm9,772 chainNetMonDom5,15 chainNetMonDom5,772 cpgIslandExt,14 cpgIslandExtUnmasked,17 cpgIslandSuper,14 ctgPos2,7 ensGene,16 ensGene,39 est,10 est,109 gap,7 gc5Base,11 gold,8 gold,54 intronEst,12 intronEst,190 microsat,10 mrna,10 mrna,55 nestedRepeats,14 netBosTau7,13 netBosTau7,772 netHg19,12 netHg19,769 netMm9,12 netMm9,769 netMonDom5,12 netMonDom5,769 nscanGene,9 numtS,7 numtSAssembled,9 numtSMitochondrion,11 numtSeq2012,10 rmsk,9 simpleRepeat,11 tRNAs,13 xenoMrna,10 xenoMrna,130 xenoRefGene,10 xenoRefGene,97 descriptions augustusGene,91 designed numtS,133 numtSAssembled,135 numtSMitochondrion,137 numtSeq2012,136 desired est,285 intronEst,366 mrna,231 xenoMrna,306 detailed augustusGene,90 chainBosTau7,458 chainBosTau7,477 chainHg19,455 chainHg19,474 chainMm9,455 chainMm9,474 chainMonDom5,455 chainMonDom5,474 chainNetBosTau7,461 chainNetBosTau7,480 chainNetHg19,458 chainNetHg19,477 chainNetMm9,458 chainNetMm9,477 chainNetMonDom5,458 chainNetMonDom5,477 nestedRepeats,70 netBosTau7,458 netBosTau7,477 netHg19,455 netHg19,474 netMm9,455 netMm9,474 netMonDom5,455 netMonDom5,474 rmsk,37 tRNAs,97 details numtS,502 numtSAssembled,504 numtSMitochondrion,506 numtSeq2012,505 rmsk,119 detected tRNAs,377 detection tRNAs,39 tRNAs,449 determining chainBosTau7,482 chainHg19,479 chainMm9,479 chainMonDom5,479 chainNetBosTau7,485 chainNetHg19,482 chainNetMm9,482 chainNetMonDom5,482 netBosTau7,482 netHg19,479 netMm9,479 netMonDom5,479 dev cpgIslandExt,419 cpgIslandExtUnmasked,422 cpgIslandSuper,419 nestedRepeats,387 nestedRepeats,409 rmsk,410 rmsk,432 developed chainBosTau7,917 chainBosTau7,952 chainBosTau7,998 chainHg19,914 chainHg19,949 chainHg19,995 chainMm9,914 chainMm9,949 chainMm9,995 chainMonDom5,914 chainMonDom5,949 chainMonDom5,995 chainNetBosTau7,920 chainNetBosTau7,955 chainNetBosTau7,1001 chainNetHg19,917 chainNetHg19,952 chainNetHg19,998 chainNetMm9,917 chainNetMm9,952 chainNetMm9,998 chainNetMonDom5,917 chainNetMonDom5,952 chainNetMonDom5,998 cpgIslandExt,595 cpgIslandExtUnmasked,598 cpgIslandSuper,595 netBosTau7,917 netBosTau7,952 netBosTau7,998 netHg19,914 netHg19,949 netHg19,995 netMm9,914 netMm9,949 netMm9,995 netMonDom5,914 netMonDom5,949 netMonDom5,995 dfam rmsk,112 di-nucleotide microsat,3 microsat,32 dieci tRNAs,476 diekhans augustusGene,288 differ est,403 intronEst,484 different augustusGene,39 augustusGene,85 augustusGene,96 augustusGene,144 augustusGene,155 augustusGene,179 augustusGene,193 chainBosTau7,557 chainHg19,554 chainMm9,554 chainMonDom5,554 chainNetBosTau7,560 chainNetHg19,557 chainNetMm9,557 chainNetMonDom5,557 ensGene,29 gc5Base,50 netBosTau7,557 netHg19,554 netMm9,554 netMonDom5,554 rmsk,149 xenoMrna,111 dinucleotide cpgIslandExt,240 cpgIslandExtUnmasked,243 cpgIslandSuper,240 dinucleotides cpgIslandExt,282 cpgIslandExt,340 cpgIslandExtUnmasked,285 cpgIslandExtUnmasked,343 cpgIslandSuper,282 cpgIslandSuper,340 direction est,78 est,96 intronEst,159 intronEst,177 numtS,207 numtS,339 numtSAssembled,209 numtSAssembled,341 numtSMitochondrion,211 numtSMitochondrion,343 numtSeq2012,210 numtSeq2012,342 directly cpgIslandExt,534 cpgIslandExtUnmasked,537 cpgIslandSuper,534 ensGene,118 directory ensGene,93 ensGene,101 rmsk,134 discarded chainBosTau7,686 chainHg19,683 chainMm9,683 chainMonDom5,683 chainNetBosTau7,689 chainNetHg19,686 chainNetMm9,686 chainNetMonDom5,686 netBosTau7,686 netHg19,683 netMm9,683 netMonDom5,683 xenoRefGene,235 discover blastHg18KG,57 discussion nestedRepeats,364 rmsk,387 diseases simpleRepeat,54 display chainBosTau7,239 chainBosTau7,308 chainBosTau7,353 chainBosTau7,383 chainBosTau7,442 chainBosTau7,471 chainBosTau7,500 chainBosTau7,974 chainHg19,237 chainHg19,305 chainHg19,350 chainHg19,380 chainHg19,439 chainHg19,468 chainHg19,497 chainHg19,971 chainMm9,237 chainMm9,305 chainMm9,350 chainMm9,380 chainMm9,439 chainMm9,468 chainMm9,497 chainMm9,971 chainMonDom5,237 chainMonDom5,305 chainMonDom5,350 chainMonDom5,380 chainMonDom5,439 chainMonDom5,468 chainMonDom5,497 chainMonDom5,971 chainNetBosTau7,242 chainNetBosTau7,311 chainNetBosTau7,356 chainNetBosTau7,386 chainNetBosTau7,445 chainNetBosTau7,474 chainNetBosTau7,503 chainNetBosTau7,977 chainNetHg19,240 chainNetHg19,308 chainNetHg19,353 chainNetHg19,383 chainNetHg19,442 chainNetHg19,471 chainNetHg19,500 chainNetHg19,974 chainNetMm9,240 chainNetMm9,308 chainNetMm9,353 chainNetMm9,383 chainNetMm9,442 chainNetMm9,471 chainNetMm9,500 chainNetMm9,974 chainNetMonDom5,240 chainNetMonDom5,308 chainNetMonDom5,353 chainNetMonDom5,383 chainNetMonDom5,442 chainNetMonDom5,471 chainNetMonDom5,500 chainNetMonDom5,974 est,43 est,51 est,59 est,124 est,151 est,181 est,326 est,350 est,366 est,382 est,392 est,441 gold,118 intronEst,116 intronEst,127 intronEst,135 intronEst,143 intronEst,205 intronEst,232 intronEst,262 intronEst,407 intronEst,431 intronEst,447 intronEst,463 intronEst,473 intronEst,522 mrna,24 mrna,32 mrna,40 mrna,70 mrna,97 mrna,127 mrna,272 mrna,296 mrna,312 mrna,328 mrna,380 nestedRepeats,111 netBosTau7,239 netBosTau7,308 netBosTau7,353 netBosTau7,383 netBosTau7,442 netBosTau7,471 netBosTau7,500 netBosTau7,974 netHg19,237 netHg19,305 netHg19,350 netHg19,380 netHg19,439 netHg19,468 netHg19,497 netHg19,971 netMm9,237 netMm9,305 netMm9,350 netMm9,380 netMm9,439 netMm9,468 netMm9,497 netMm9,971 netMonDom5,237 netMonDom5,305 netMonDom5,350 netMonDom5,380 netMonDom5,439 netMonDom5,468 netMonDom5,497 netMonDom5,971 numtS,9 numtSAssembled,11 numtSMitochondrion,13 numtSeq2012,12 rmsk,135 rmsk,141 rmsk,212 xenoMrna,29 xenoMrna,37 xenoMrna,45 xenoMrna,145 xenoMrna,172 xenoMrna,202 xenoMrna,347 xenoMrna,371 xenoMrna,387 xenoMrna,403 xenoMrna,455 xenoRefGene,41 xenoRefGene,49 xenoRefGene,78 xenoRefGene,114 xenoRefGene,157 displayed chainBosTau7,419 chainBosTau7,516 chainBosTau7,691 chainHg19,416 chainHg19,513 chainHg19,688 chainMm9,416 chainMm9,513 chainMm9,688 chainMonDom5,416 chainMonDom5,513 chainMonDom5,688 chainNetBosTau7,422 chainNetBosTau7,519 chainNetBosTau7,694 chainNetHg19,419 chainNetHg19,516 chainNetHg19,691 chainNetMm9,419 chainNetMm9,516 chainNetMm9,691 chainNetMonDom5,419 chainNetMonDom5,516 chainNetMonDom5,691 cpgIslandExt,204 cpgIslandExtUnmasked,207 cpgIslandSuper,204 gc5Base,54 intronEst,801 nestedRepeats,124 nestedRepeats,217 netBosTau7,419 netBosTau7,516 netBosTau7,691 netHg19,416 netHg19,513 netHg19,688 netMm9,416 netMm9,513 netMm9,688 netMonDom5,416 netMonDom5,513 netMonDom5,688 xenoRefGene,202 displays chainBosTau7,122 chainHg19,120 chainMm9,120 chainMonDom5,120 chainNetBosTau7,125 chainNetHg19,123 chainNetMm9,123 chainNetMonDom5,123 cpgIslandExt,174 cpgIslandExtUnmasked,177 cpgIslandSuper,174 microsat,13 netBosTau7,122 netHg19,120 netMm9,120 netMonDom5,120 rmsk,145 simpleRepeat,14 tRNAs,16 xenoMrna,13 dissertation augustusGene,105 distance numtS,271 numtSAssembled,273 numtSMitochondrion,275 numtSeq2012,274 distant est,582 intronEst,663 distinguish cpgIslandExt,75 cpgIslandExtUnmasked,78 cpgIslandSuper,75 distinguished gold,73 distributions augustusGene,83 diverged chainBosTau7,909 chainHg19,906 chainMm9,906 chainMonDom5,906 chainNetBosTau7,912 chainNetHg19,909 chainNetMm9,909 chainNetMonDom5,909 nestedRepeats,212 netBosTau7,909 netHg19,906 netMm9,906 netMonDom5,906 dj blastHg18KG,162 est,752 est,776 intronEst,836 intronEst,860 mrna,469 mrna,493 xenoMrna,544 xenoMrna,568 dl est,780 intronEst,864 mrna,497 xenoMrna,572 dna chainBosTau7,1018 chainHg19,1015 chainMm9,1015 chainMonDom5,1015 chainNetBosTau7,1021 chainNetHg19,1018 chainNetMm9,1018 chainNetMonDom5,1018 cpgIslandExt,60 cpgIslandExt,79 cpgIslandExt,92 cpgIslandExtUnmasked,63 cpgIslandExtUnmasked,82 cpgIslandExtUnmasked,95 cpgIslandSuper,60 cpgIslandSuper,79 cpgIslandSuper,92 microsat,123 nestedRepeats,33 nestedRepeats,41 netBosTau7,1018 netHg19,1015 netMm9,1015 netMonDom5,1015 rmsk,23 rmsk,31 rmsk,174 rmsk,177 rmsk,257 simpleRepeat,83 tRNAs,427 tRNAs,488 xenoMrna,108 do cpgIslandExt,140 cpgIslandExtUnmasked,143 cpgIslandSuper,140 gap,115 tRNAs,152 tRNAs,305 doc rmsk,132 does tRNAs,113 tRNAs,135 dollar cpgIslandExt,425 cpgIslandExt,427 cpgIslandExt,431 cpgIslandExt,433 cpgIslandExt,457 cpgIslandExt,459 cpgIslandExt,461 cpgIslandExt,463 cpgIslandExt,465 cpgIslandExt,468 cpgIslandExt,471 cpgIslandExt,476 cpgIslandExt,479 cpgIslandExt,481 cpgIslandExtUnmasked,428 cpgIslandExtUnmasked,430 cpgIslandExtUnmasked,434 cpgIslandExtUnmasked,436 cpgIslandExtUnmasked,460 cpgIslandExtUnmasked,462 cpgIslandExtUnmasked,464 cpgIslandExtUnmasked,466 cpgIslandExtUnmasked,468 cpgIslandExtUnmasked,471 cpgIslandExtUnmasked,474 cpgIslandExtUnmasked,479 cpgIslandExtUnmasked,482 cpgIslandExtUnmasked,484 cpgIslandSuper,425 cpgIslandSuper,427 cpgIslandSuper,431 cpgIslandSuper,433 cpgIslandSuper,457 cpgIslandSuper,459 cpgIslandSuper,461 cpgIslandSuper,463 cpgIslandSuper,465 cpgIslandSuper,468 cpgIslandSuper,471 cpgIslandSuper,476 cpgIslandSuper,479 cpgIslandSuper,481 domenico numtS,479 numtS,515 numtSAssembled,481 numtSAssembled,517 numtSMitochondrion,483 numtSMitochondrion,519 numtSeq2012,482 numtSeq2012,518 done augustusGene,265 augustusGene,281 double chainBosTau7,130 chainBosTau7,159 chainHg19,128 chainHg19,157 chainMm9,128 chainMm9,157 chainMonDom5,128 chainMonDom5,157 chainNetBosTau7,133 chainNetBosTau7,162 chainNetHg19,131 chainNetHg19,160 chainNetMm9,131 chainNetMm9,160 chainNetMonDom5,131 chainNetMonDom5,160 netBosTau7,130 netBosTau7,159 netHg19,128 netHg19,157 netMm9,128 netMm9,157 netMonDom5,128 netMonDom5,157 double-lined chainBosTau7,219 chainHg19,217 chainMm9,217 chainMonDom5,217 chainNetBosTau7,222 chainNetHg19,220 chainNetMm9,220 chainNetMonDom5,220 netBosTau7,219 netHg19,217 netMm9,217 netMonDom5,217 double-sided chainBosTau7,104 chainHg19,102 chainMm9,102 chainMonDom5,102 chainNetBosTau7,107 chainNetHg19,105 chainNetMm9,105 chainNetMonDom5,105 netBosTau7,104 netHg19,102 netMm9,102 netMonDom5,102 down ensGene,193 download ensGene,100 ensGene,150 downloads ensGene,81 ensGene,92 rmsk,76 dr xenoRefGene,364 draft ctgPos2,39 gap,14 gold,15 gold,138 drastically intronEst,103 drawn gap,88 gold,114 drosophila augustusGene,213 duan nscanGene,230 due chainBosTau7,144 chainBosTau7,212 chainBosTau7,224 chainHg19,142 chainHg19,210 chainHg19,222 chainMm9,142 chainMm9,210 chainMm9,222 chainMonDom5,142 chainMonDom5,210 chainMonDom5,222 chainNetBosTau7,147 chainNetBosTau7,215 chainNetBosTau7,227 chainNetHg19,145 chainNetHg19,213 chainNetHg19,225 chainNetMm9,145 chainNetMm9,213 chainNetMm9,225 chainNetMonDom5,145 chainNetMonDom5,213 chainNetMonDom5,225 netBosTau7,144 netBosTau7,212 netBosTau7,224 netHg19,142 netHg19,210 netHg19,222 netMm9,142 netMm9,210 netMm9,222 netMonDom5,142 netMonDom5,210 netMonDom5,222 duplication chainBosTau7,1056 chainHg19,1053 chainMm9,1053 chainMonDom5,1053 chainNetBosTau7,1059 chainNetHg19,1056 chainNetMm9,1056 chainNetMonDom5,1056 cpgIslandExt,95 cpgIslandExtUnmasked,98 cpgIslandSuper,95 netBosTau7,1056 netHg19,1053 netMm9,1053 netMonDom5,1053 numtS,63 numtSAssembled,65 numtSMitochondrion,67 numtSeq2012,66 durbin tRNAs,396 during chainBosTau7,814 chainHg19,811 chainMm9,811 chainMonDom5,811 chainNetBosTau7,817 chainNetHg19,814 chainNetMm9,814 chainNetMonDom5,814 gap,44 netBosTau7,814 netHg19,811 netMm9,811 netMonDom5,811 numtS,54 numtS,74 numtSAssembled,56 numtSAssembled,76 numtSMitochondrion,58 numtSMitochondrion,78 numtSeq2012,57 numtSeq2012,77 dynamic chainBosTau7,647 chainHg19,644 chainMm9,644 chainMonDom5,644 chainNetBosTau7,650 chainNetHg19,647 chainNetMm9,647 chainNetMonDom5,647 netBosTau7,647 netHg19,644 netMm9,644 netMonDom5,644 e ensGene,180 tRNAs,352 e-value numtS,429 numtSAssembled,431 numtSMitochondrion,433 numtSeq2012,432 e.g chainBosTau7,370 chainHg19,367 chainMm9,367 chainMonDom5,367 chainNetBosTau7,373 chainNetHg19,370 chainNetMm9,370 chainNetMonDom5,370 netBosTau7,370 netHg19,367 netMm9,367 netMonDom5,367 each blastHg18KG,68 chainBosTau7,257 chainHg19,255 chainMm9,255 chainMonDom5,255 chainNetBosTau7,260 chainNetHg19,258 chainNetMm9,258 chainNetMonDom5,258 cpgIslandExt,239 cpgIslandExt,253 cpgIslandExtUnmasked,242 cpgIslandExtUnmasked,256 cpgIslandSuper,239 cpgIslandSuper,253 est,214 intronEst,295 mrna,160 nestedRepeats,120 netBosTau7,257 netHg19,255 netMm9,255 netMonDom5,255 numtS,411 numtSAssembled,413 numtSMitochondrion,415 numtSeq2012,414 xenoMrna,235 easier numtS,233 numtSAssembled,235 numtSMitochondrion,237 numtSeq2012,236 eddy tRNAs,65 tRNAs,394 tRNAs,442 educated tRNAs,255 effect est,597 intronEst,678 either chainBosTau7,127 chainHg19,125 chainMm9,125 chainMonDom5,125 chainNetBosTau7,130 chainNetHg19,128 chainNetMm9,128 chainNetMonDom5,128 gap,67 netBosTau7,127 netHg19,125 netMm9,125 netMonDom5,125 rmsk,273 electronic nestedRepeats,348 rmsk,371 element numtS,301 numtSAssembled,303 numtSMitochondrion,305 numtSeq2012,304 rmsk,228 elements nestedRepeats,352 nestedRepeats,380 rmsk,3 rmsk,156 rmsk,164 rmsk,169 rmsk,176 rmsk,375 rmsk,403 tRNAs,302 eliminate est,669 intronEst,750 eliminating intronEst,109 emerged chainBosTau7,820 chainHg19,817 chainMm9,817 chainMonDom5,817 chainNetBosTau7,823 chainNetHg19,820 chainNetMm9,820 chainNetMonDom5,820 est,567 intronEst,648 netBosTau7,820 netHg19,817 netMm9,817 netMonDom5,817 encode tRNAs,171 encodes tRNAs,143 end est,517 est,535 est,545 est,586 intronEst,598 intronEst,616 intronEst,626 intronEst,667 rmsk,245 end-sequencing gold,38 ends intronEst,90 ensembl ensGene,1 ensGene,3 ensGene,9 ensGene,23 ensGene,45 ensGene,64 ensGene,158 ensGene,169 ensGene,198 ensgene.txt.gz ensGene,95 enter chainBosTau7,364 chainHg19,361 chainMm9,361 chainMonDom5,361 chainNetBosTau7,367 chainNetHg19,364 chainNetMm9,364 chainNetMonDom5,364 netBosTau7,364 netHg19,361 netMm9,361 netMonDom5,361 entered est,251 est,261 intronEst,332 intronEst,342 mrna,197 mrna,207 xenoMrna,272 xenoMrna,282 entire cpgIslandExt,301 cpgIslandExtUnmasked,304 cpgIslandSuper,301 ermolaeva xenoRefGene,327 escape numtS,44 numtSAssembled,46 numtSMitochondrion,48 numtSeq2012,47 especially est,152 intronEst,233 mrna,98 xenoMrna,173 est est,9 est,84 est,180 est,448 est,611 est,632 est,683 est,729 intronEst,11 intronEst,60 intronEst,75 intronEst,100 intronEst,125 intronEst,165 intronEst,261 intronEst,529 intronEst,692 intronEst,713 intronEst,764 intronEst,813 mrna,9 xenoMrna,9 ests est,2 est,4 est,20 est,26 est,190 est,295 est,310 est,351 est,369 est,487 est,532 est,543 est,644 est,671 intronEst,2 intronEst,4 intronEst,22 intronEst,38 intronEst,113 intronEst,119 intronEst,153 intronEst,271 intronEst,376 intronEst,391 intronEst,432 intronEst,450 intronEst,568 intronEst,613 intronEst,624 intronEst,725 intronEst,752 et cpgIslandExt,377 cpgIslandExtUnmasked,380 cpgIslandSuper,377 ensGene,52 ensGene,195 nscanGene,201 xenoRefGene,337 eukaryotes tRNAs,101 eukaryotic tRNAs,483 evaluated cpgIslandExt,257 cpgIslandExtUnmasked,260 cpgIslandSuper,257 even est,606 est,613 intronEst,687 intronEst,694 every chainBosTau7,272 chainHg19,270 chainMm9,270 chainMonDom5,270 chainNetBosTau7,275 chainNetHg19,273 chainNetMm9,273 chainNetMonDom5,273 netBosTau7,272 netHg19,270 netMm9,270 netMonDom5,270 numtS,220 numtS,352 numtSAssembled,222 numtSAssembled,354 numtSMitochondrion,224 numtSMitochondrion,356 numtSeq2012,223 numtSeq2012,355 evidence intronEst,63 evidences numtS,83 numtSAssembled,85 numtSMitochondrion,87 numtSeq2012,86 evolution chainBosTau7,1053 chainHg19,1050 chainMm9,1050 chainMonDom5,1050 chainNetBosTau7,1056 chainNetHg19,1053 chainNetMm9,1053 chainNetMonDom5,1053 netBosTau7,1053 netHg19,1050 netMm9,1050 netMonDom5,1050 nscanGene,82 evolutionary cpgIslandExt,98 cpgIslandExtUnmasked,101 cpgIslandSuper,98 ew blastHg18KG,160 est,756 intronEst,840 mrna,473 xenoMrna,548 exact tRNAs,264 example est,183 est,236 intronEst,264 intronEst,317 mrna,129 mrna,182 rmsk,256 xenoMrna,204 xenoMrna,257 exception gap,35 exceptions numtS,291 numtSAssembled,293 numtSMitochondrion,295 numtSeq2012,294 exclude est,131 est,336 est,342 intronEst,212 intronEst,417 intronEst,423 mrna,77 mrna,282 mrna,288 xenoMrna,152 xenoMrna,357 xenoMrna,363 exe cpgIslandExt,578 cpgIslandExtUnmasked,581 cpgIslandSuper,578 exist chainBosTau7,403 chainHg19,400 chainMm9,400 chainMonDom5,400 chainNetBosTau7,406 chainNetHg19,403 chainNetMm9,403 chainNetMonDom5,403 cpgIslandExt,179 cpgIslandExtUnmasked,182 cpgIslandSuper,179 gold,85 netBosTau7,403 netHg19,400 netMm9,400 netMonDom5,400 exon augustusGene,86 blastHg18KG,58 blastHg18KG,69 blastHg18KG,101 blastHg18KG,114 exons blastHg18KG,84 chainBosTau7,49 chainHg19,48 chainMm9,48 chainMonDom5,48 chainNetBosTau7,52 chainNetHg19,51 chainNetMm9,51 chainNetMonDom5,51 netBosTau7,49 netHg19,48 netMm9,48 netMonDom5,48 exp cpgIslandExt,381 cpgIslandExtUnmasked,384 cpgIslandSuper,381 expansions simpleRepeat,48 expected cpgIslandExt,285 cpgIslandExt,366 cpgIslandExtUnmasked,288 cpgIslandExtUnmasked,369 cpgIslandSuper,285 cpgIslandSuper,366 expense intronEst,107 explanation gc5Base,66 explored cpgIslandExt,514 cpgIslandExtUnmasked,517 cpgIslandSuper,514 ensGene,69 expressed est,17 est,191 intronEst,19 intronEst,272 mrna,137 xenoMrna,212 expression cpgIslandExt,11 cpgIslandExt,146 cpgIslandExtUnmasked,14 cpgIslandExtUnmasked,149 cpgIslandSuper,11 cpgIslandSuper,146 extend rmsk,308 extended blastHg18KG,117 extending blastHg18KG,103 extends nscanGene,60 extracted nestedRepeats,23 f chainBosTau7,1026 chainHg19,1023 chainMm9,1023 chainMonDom5,1023 chainNetBosTau7,1029 chainNetHg19,1026 chainNetMm9,1026 chainNetMonDom5,1026 ctgPos2,42 gold,141 netBosTau7,1026 netHg19,1023 netMm9,1023 netMonDom5,1023 nscanGene,152 tRNAs,473 xenoRefGene,324 factor est,228 intronEst,309 mrna,174 xenoMrna,249 fall numtS,386 numtSAssembled,388 numtSMitochondrion,390 numtSeq2012,389 false numtS,80 numtSAssembled,82 numtSMitochondrion,84 numtSeq2012,83 tRNAs,87 family rmsk,249 faq augustusGene,45 ensGene,35 nestedRepeats,298 rmsk,321 farrell xenoRefGene,329 feature chainBosTau7,243 chainHg19,241 chainMm9,241 chainMonDom5,241 chainNetBosTau7,246 chainNetHg19,244 chainNetMm9,244 chainNetMonDom5,244 est,386 intronEst,467 mrna,332 netBosTau7,243 netHg19,241 netMm9,241 netMonDom5,241 xenoMrna,407 xenoRefGene,145 xenoRefGene,178 features numtS,561 numtSAssembled,563 numtSMitochondrion,565 numtSeq2012,564 tRNAs,185 tRNAs,218 tRNAs,238 tRNAs,276 xenoRefGene,81 feb chainHg19,4 chainHg19,66 chainHg19,300 chainNetHg19,5 chainNetHg19,69 chainNetHg19,303 chainNetHg19Viewchain,3 chainNetHg19Viewnet,3 netHg19,4 netHg19,66 netHg19,300 fed chainBosTau7,613 chainHg19,610 chainMm9,610 chainMonDom5,610 chainNetBosTau7,616 chainNetHg19,613 chainNetMm9,613 chainNetMonDom5,613 netBosTau7,613 netHg19,610 netMm9,610 netMonDom5,610 fewer tRNAs,91 fichant tRNAs,32 tRNAs,417 field augustusGene,120 file cpgIslandExt,583 cpgIslandExtUnmasked,586 cpgIslandSuper,583 gap,161 files ctgPos2,21 ensGene,85 fill chainBosTau7,844 chainBosTau7,877 chainHg19,841 chainHg19,874 chainMm9,841 chainMm9,874 chainMonDom5,841 chainMonDom5,874 chainNetBosTau7,847 chainNetBosTau7,880 chainNetHg19,844 chainNetHg19,877 chainNetMm9,844 chainNetMm9,877 chainNetMonDom5,844 chainNetMonDom5,877 netBosTau7,844 netBosTau7,877 netHg19,841 netHg19,874 netMm9,841 netMm9,874 netMonDom5,841 netMonDom5,874 filled chainBosTau7,412 chainBosTau7,431 chainBosTau7,826 chainBosTau7,899 chainHg19,409 chainHg19,428 chainHg19,823 chainHg19,896 chainMm9,409 chainMm9,428 chainMm9,823 chainMm9,896 chainMonDom5,409 chainMonDom5,428 chainMonDom5,823 chainMonDom5,896 chainNetBosTau7,415 chainNetBosTau7,434 chainNetBosTau7,829 chainNetBosTau7,902 chainNetHg19,412 chainNetHg19,431 chainNetHg19,826 chainNetHg19,899 chainNetMm9,412 chainNetMm9,431 chainNetMm9,826 chainNetMm9,899 chainNetMonDom5,412 chainNetMonDom5,431 chainNetMonDom5,826 chainNetMonDom5,899 netBosTau7,412 netBosTau7,431 netBosTau7,826 netBosTau7,899 netHg19,409 netHg19,428 netHg19,823 netHg19,896 netMm9,409 netMm9,428 netMm9,823 netMm9,896 netMonDom5,409 netMonDom5,428 netMonDom5,823 netMonDom5,896 filter chainBosTau7,376 chainHg19,373 chainMm9,373 chainMonDom5,373 chainNetBosTau7,379 chainNetHg19,376 chainNetMm9,376 chainNetMonDom5,376 est,116 est,165 est,178 est,187 est,234 est,275 est,299 est,317 est,355 est,373 intronEst,197 intronEst,246 intronEst,259 intronEst,268 intronEst,315 intronEst,356 intronEst,380 intronEst,398 intronEst,436 intronEst,454 mrna,62 mrna,111 mrna,124 mrna,133 mrna,180 mrna,221 mrna,245 mrna,263 mrna,301 mrna,319 netBosTau7,376 netHg19,373 netMm9,373 netMonDom5,373 xenoMrna,137 xenoMrna,186 xenoMrna,199 xenoMrna,208 xenoMrna,255 xenoMrna,296 xenoMrna,320 xenoMrna,338 xenoMrna,376 xenoMrna,394 filtered est,338 intronEst,419 mrna,284 xenoMrna,359 filtering est,277 intronEst,358 mrna,223 xenoMrna,298 filters tRNAs,55 final cpgIslandExt,89 cpgIslandExtUnmasked,92 cpgIslandSuper,89 finally blastHg18KG,80 find chainBosTau7,656 chainHg19,653 chainMm9,653 chainMonDom5,653 chainNetBosTau7,659 chainNetHg19,656 chainNetMm9,656 chainNetMonDom5,656 netBosTau7,656 netHg19,653 netMm9,653 netMonDom5,653 rmsk,117 finder microsat,94 microsat,107 microsat,118 simpleRepeat,25 simpleRepeat,78 finding augustusGene,306 chainBosTau7,282 chainHg19,280 chainMm9,280 chainMonDom5,280 chainNetBosTau7,285 chainNetHg19,283 chainNetMm9,283 chainNetMonDom5,283 netBosTau7,282 netHg19,280 netMm9,280 netMonDom5,280 finished ctgPos2,44 gold,143 finishing ctgPos2,35 gap,46 gold,134 first blastHg18KG,36 chainBosTau7,784 chainHg19,781 chainMm9,781 chainMonDom5,781 chainNetBosTau7,787 chainNetHg19,784 chainNetMm9,784 chainNetMonDom5,784 netBosTau7,784 netHg19,781 netMm9,781 netMonDom5,781 numtS,452 numtSAssembled,454 numtSMitochondrion,456 numtSeq2012,455 xenoMrna,70 fish augustusGene,201 fit chainBosTau7,804 chainHg19,801 chainMm9,801 chainMonDom5,801 chainNetBosTau7,807 chainNetHg19,804 chainNetMm9,804 chainNetMonDom5,804 nestedRepeats,175 netBosTau7,804 netHg19,801 netMm9,801 netMonDom5,801 fixing numtS,427 numtSAssembled,429 numtSMitochondrion,431 numtSeq2012,430 flag nestedRepeats,287 rmsk,294 flags nestedRepeats,289 rmsk,296 flicek nscanGene,228 fly augustusGene,214 fm numtS,519 numtS,585 numtSAssembled,521 numtSAssembled,587 numtSMitochondrion,523 numtSMitochondrion,589 numtSeq2012,522 numtSeq2012,588 fold tRNAs,308 followed cpgIslandExt,47 cpgIslandExtUnmasked,50 cpgIslandSuper,47 following chainBosTau7,665 chainHg19,662 chainMm9,662 chainMonDom5,662 chainNetBosTau7,668 chainNetHg19,665 chainNetMm9,665 chainNetMonDom5,665 cpgIslandExt,260 cpgIslandExt,408 cpgIslandExtUnmasked,263 cpgIslandExtUnmasked,411 cpgIslandSuper,260 cpgIslandSuper,408 gap,100 netBosTau7,665 netHg19,662 netMm9,662 netMonDom5,662 numtS,260 numtSAssembled,262 numtSMitochondrion,264 numtSeq2012,263 tRNAs,364 follows est,49 intronEst,133 mrna,30 xenoMrna,35 xenoRefGene,47 for augustusGene,34 augustusGene,52 augustusGene,68 augustusGene,80 augustusGene,175 augustusGene,184 augustusGene,192 augustusGene,232 augustusGene,253 augustusGene,260 augustusGene,274 blastHg18KG,147 chainBosTau7,256 chainBosTau7,271 chainBosTau7,281 chainBosTau7,288 chainBosTau7,489 chainHg19,254 chainHg19,269 chainHg19,279 chainHg19,286 chainHg19,486 chainMm9,254 chainMm9,269 chainMm9,279 chainMm9,286 chainMm9,486 chainMonDom5,254 chainMonDom5,269 chainMonDom5,279 chainMonDom5,286 chainMonDom5,486 chainNetBosTau7,259 chainNetBosTau7,274 chainNetBosTau7,284 chainNetBosTau7,291 chainNetBosTau7,492 chainNetHg19,257 chainNetHg19,272 chainNetHg19,282 chainNetHg19,289 chainNetHg19,489 chainNetMm9,257 chainNetMm9,272 chainNetMm9,282 chainNetMm9,289 chainNetMm9,489 chainNetMonDom5,257 chainNetMonDom5,272 chainNetMonDom5,282 chainNetMonDom5,289 chainNetMonDom5,489 cpgIslandExt,133 cpgIslandExt,162 cpgIslandExt,242 cpgIslandExt,246 cpgIslandExt,258 cpgIslandExt,309 cpgIslandExt,500 cpgIslandExt,556 cpgIslandExtUnmasked,136 cpgIslandExtUnmasked,165 cpgIslandExtUnmasked,245 cpgIslandExtUnmasked,249 cpgIslandExtUnmasked,261 cpgIslandExtUnmasked,312 cpgIslandExtUnmasked,503 cpgIslandExtUnmasked,559 cpgIslandSuper,133 cpgIslandSuper,162 cpgIslandSuper,242 cpgIslandSuper,246 cpgIslandSuper,258 cpgIslandSuper,309 cpgIslandSuper,500 cpgIslandSuper,556 ensGene,24 ensGene,37 ensGene,79 ensGene,86 ensGene,105 ensGene,159 ensGene,164 est,53 est,111 est,182 est,213 est,235 est,408 est,419 est,432 est,480 gc5Base,64 intronEst,114 intronEst,137 intronEst,192 intronEst,263 intronEst,294 intronEst,316 intronEst,489 intronEst,500 intronEst,513 intronEst,561 microsat,95 mrna,34 mrna,57 mrna,128 mrna,159 mrna,181 mrna,345 mrna,358 mrna,371 nestedRepeats,35 nestedRepeats,239 nestedRepeats,293 nestedRepeats,299 nestedRepeats,311 nestedRepeats,362 netBosTau7,256 netBosTau7,271 netBosTau7,281 netBosTau7,288 netBosTau7,489 netHg19,254 netHg19,269 netHg19,279 netHg19,286 netHg19,486 netMm9,254 netMm9,269 netMm9,279 netMm9,286 netMm9,486 netMonDom5,254 netMonDom5,269 netMonDom5,279 netMonDom5,286 netMonDom5,486 nscanGene,68 nscanGene,128 nscanGene,134 numtS,219 numtS,292 numtS,351 numtS,450 numtS,457 numtSAssembled,221 numtSAssembled,294 numtSAssembled,353 numtSAssembled,452 numtSAssembled,459 numtSMitochondrion,223 numtSMitochondrion,296 numtSMitochondrion,355 numtSMitochondrion,454 numtSMitochondrion,461 numtSeq2012,222 numtSeq2012,295 numtSeq2012,354 numtSeq2012,453 numtSeq2012,460 rmsk,25 rmsk,120 rmsk,255 rmsk,300 rmsk,322 rmsk,334 rmsk,385 simpleRepeat,30 simpleRepeat,56 tRNAs,100 tRNAs,230 tRNAs,447 xenoMrna,39 xenoMrna,62 xenoMrna,132 xenoMrna,203 xenoMrna,234 xenoMrna,256 xenoMrna,420 xenoMrna,433 xenoMrna,446 xenoRefGene,19 xenoRefGene,51 xenoRefGene,173 format chainBosTau7,604 chainHg19,601 chainMm9,601 chainMonDom5,601 chainNetBosTau7,607 chainNetHg19,604 chainNetMm9,604 chainNetMonDom5,604 ensGene,84 ensGene,104 netBosTau7,604 netHg19,601 netMm9,601 netMonDom5,601 numtS,447 numtS,464 numtS,501 numtSAssembled,449 numtSAssembled,466 numtSAssembled,503 numtSMitochondrion,451 numtSMitochondrion,468 numtSMitochondrion,505 numtSeq2012,450 numtSeq2012,467 numtSeq2012,504 formula cpgIslandExt,373 cpgIslandExtUnmasked,376 cpgIslandSuper,373 forth chainBosTau7,438 chainHg19,435 chainMm9,435 chainMonDom5,435 chainNetBosTau7,441 chainNetHg19,438 chainNetMm9,438 chainNetMonDom5,438 netBosTau7,438 netHg19,435 netMm9,435 netMonDom5,435 found augustusGene,100 ensGene,146 mrna,412 xenoMrna,486 four chainBosTau7,506 chainHg19,503 chainMm9,503 chainMonDom5,503 chainNetBosTau7,509 chainNetHg19,506 chainNetMm9,506 chainNetMonDom5,506 netBosTau7,506 netHg19,503 netMm9,503 netMonDom5,503 xenoMrna,117 fragment gap,105 fragments est,39 gold,4 intronEst,51 nestedRepeats,3 nestedRepeats,19 nestedRepeats,82 nestedRepeats,101 nestedRepeats,127 nestedRepeats,139 nestedRepeats,191 nestedRepeats,205 nestedRepeats,208 numtS,17 numtS,41 numtS,66 numtSAssembled,19 numtSAssembled,43 numtSAssembled,68 numtSMitochondrion,21 numtSMitochondrion,45 numtSMitochondrion,70 numtSeq2012,20 numtSeq2012,44 numtSeq2012,69 francesco numtS,473 numtS,508 numtSAssembled,475 numtSAssembled,510 numtSMitochondrion,477 numtSMitochondrion,512 numtSeq2012,476 numtSeq2012,511 frequent numtS,79 numtSAssembled,81 numtSMitochondrion,83 numtSeq2012,82 from augustusGene,19 blastHg18KG,22 blastHg18KG,40 chainBosTau7,175 chainBosTau7,300 chainBosTau7,558 chainBosTau7,580 chainBosTau7,761 chainBosTau7,934 chainBosTau7,966 chainHg19,173 chainHg19,298 chainHg19,555 chainHg19,577 chainHg19,758 chainHg19,931 chainHg19,963 chainMm9,173 chainMm9,298 chainMm9,555 chainMm9,577 chainMm9,758 chainMm9,931 chainMm9,963 chainMonDom5,173 chainMonDom5,298 chainMonDom5,555 chainMonDom5,577 chainMonDom5,758 chainMonDom5,931 chainMonDom5,963 chainNetBosTau7,178 chainNetBosTau7,303 chainNetBosTau7,561 chainNetBosTau7,583 chainNetBosTau7,764 chainNetBosTau7,937 chainNetBosTau7,969 chainNetHg19,176 chainNetHg19,301 chainNetHg19,558 chainNetHg19,580 chainNetHg19,761 chainNetHg19,934 chainNetHg19,966 chainNetMm9,176 chainNetMm9,301 chainNetMm9,558 chainNetMm9,580 chainNetMm9,761 chainNetMm9,934 chainNetMm9,966 chainNetMonDom5,176 chainNetMonDom5,301 chainNetMonDom5,558 chainNetMonDom5,580 chainNetMonDom5,761 chainNetMonDom5,934 chainNetMonDom5,966 cpgIslandExt,81 cpgIslandExt,496 cpgIslandExt,535 cpgIslandExt,563 cpgIslandExt,574 cpgIslandExtUnmasked,84 cpgIslandExtUnmasked,499 cpgIslandExtUnmasked,538 cpgIslandExtUnmasked,566 cpgIslandExtUnmasked,577 cpgIslandSuper,81 cpgIslandSuper,496 cpgIslandSuper,535 cpgIslandSuper,563 cpgIslandSuper,574 ctgPos2,17 ensGene,8 ensGene,113 ensGene,119 est,404 est,452 est,473 est,583 est,601 est,645 est,728 gold,3 intronEst,485 intronEst,533 intronEst,554 intronEst,664 intronEst,682 intronEst,726 intronEst,812 mrna,5 mrna,445 nestedRepeats,24 nestedRepeats,50 nestedRepeats,72 netBosTau7,175 netBosTau7,300 netBosTau7,558 netBosTau7,580 netBosTau7,761 netBosTau7,934 netBosTau7,966 netHg19,173 netHg19,298 netHg19,555 netHg19,577 netHg19,758 netHg19,931 netHg19,963 netMm9,173 netMm9,298 netMm9,555 netMm9,577 netMm9,758 netMm9,931 netMm9,963 netMonDom5,173 netMonDom5,298 netMonDom5,555 netMonDom5,577 netMonDom5,758 netMonDom5,931 netMonDom5,963 nscanGene,49 numtS,45 numtS,62 numtS,389 numtS,484 numtSAssembled,47 numtSAssembled,64 numtSAssembled,391 numtSAssembled,486 numtSMitochondrion,49 numtSMitochondrion,66 numtSMitochondrion,393 numtSMitochondrion,488 numtSeq2012,48 numtSeq2012,65 numtSeq2012,392 numtSeq2012,487 rmsk,86 tRNAs,130 xenoMrna,5 xenoMrna,24 xenoMrna,520 xenoRefGene,25 xenoRefGene,165 xenoRefGene,284 frommer cpgIslandExt,606 cpgIslandExtUnmasked,609 cpgIslandSuper,606 fulfilling numtS,258 numtSAssembled,260 numtSMitochondrion,262 numtSeq2012,261 full chainBosTau7,237 chainBosTau7,382 chainHg19,235 chainHg19,379 chainMm9,235 chainMm9,379 chainMonDom5,235 chainMonDom5,379 chainNetBosTau7,240 chainNetBosTau7,385 chainNetHg19,238 chainNetHg19,382 chainNetMm9,238 chainNetMm9,382 chainNetMonDom5,238 chainNetMonDom5,382 nestedRepeats,118 netBosTau7,237 netBosTau7,382 netHg19,235 netHg19,379 netMm9,235 netMm9,379 netMonDom5,235 netMonDom5,379 rmsk,140 function tRNAs,154 functional tRNAs,145 tRNAs,172 tRNAs,221 furthermore augustusGene,64 future rmsk,272 g cpgIslandExt,51 cpgIslandExt,392 cpgIslandExt,597 cpgIslandExtUnmasked,54 cpgIslandExtUnmasked,395 cpgIslandExtUnmasked,600 cpgIslandSuper,51 cpgIslandSuper,392 cpgIslandSuper,597 ensGene,182 gc5Base,20 microsat,115 numtS,551 numtS,553 numtS,589 numtSAssembled,553 numtSAssembled,555 numtSAssembled,591 numtSMitochondrion,555 numtSMitochondrion,557 numtSMitochondrion,593 numtSeq2012,554 numtSeq2012,556 numtSeq2012,592 simpleRepeat,75 tRNAs,477 g-31-125100-114 chainBosTau7,673 chainHg19,670 chainMm9,670 chainMonDom5,670 chainNetBosTau7,676 chainNetHg19,673 chainNetMm9,673 chainNetMonDom5,673 netBosTau7,673 netHg19,670 netMm9,670 netMonDom5,670 ga tRNAs,418 gambiae augustusGene,219 gap blastHg18KG,92 blastHg18KG,96 chainBosTau7,78 chainBosTau7,88 chainBosTau7,187 chainBosTau7,475 chainBosTau7,487 chainBosTau7,510 chainBosTau7,528 chainBosTau7,543 chainBosTau7,560 chainBosTau7,697 chainBosTau7,828 chainHg19,76 chainHg19,86 chainHg19,185 chainHg19,472 chainHg19,484 chainHg19,507 chainHg19,525 chainHg19,540 chainHg19,557 chainHg19,694 chainHg19,825 chainMm9,76 chainMm9,86 chainMm9,185 chainMm9,472 chainMm9,484 chainMm9,507 chainMm9,525 chainMm9,540 chainMm9,557 chainMm9,694 chainMm9,825 chainMonDom5,76 chainMonDom5,86 chainMonDom5,185 chainMonDom5,472 chainMonDom5,484 chainMonDom5,507 chainMonDom5,525 chainMonDom5,540 chainMonDom5,557 chainMonDom5,694 chainMonDom5,825 chainNetBosTau7,81 chainNetBosTau7,91 chainNetBosTau7,190 chainNetBosTau7,478 chainNetBosTau7,490 chainNetBosTau7,513 chainNetBosTau7,531 chainNetBosTau7,546 chainNetBosTau7,563 chainNetBosTau7,700 chainNetBosTau7,831 chainNetHg19,79 chainNetHg19,89 chainNetHg19,188 chainNetHg19,475 chainNetHg19,487 chainNetHg19,510 chainNetHg19,528 chainNetHg19,543 chainNetHg19,560 chainNetHg19,697 chainNetHg19,828 chainNetMm9,79 chainNetMm9,89 chainNetMm9,188 chainNetMm9,475 chainNetMm9,487 chainNetMm9,510 chainNetMm9,528 chainNetMm9,543 chainNetMm9,560 chainNetMm9,697 chainNetMm9,828 chainNetMonDom5,79 chainNetMonDom5,89 chainNetMonDom5,188 chainNetMonDom5,475 chainNetMonDom5,487 chainNetMonDom5,510 chainNetMonDom5,528 chainNetMonDom5,543 chainNetMonDom5,560 chainNetMonDom5,697 chainNetMonDom5,828 est,427 gap,1 gap,2 gap,71 gap,82 gap,95 gap,106 gap,111 gap,132 intronEst,508 mrna,366 netBosTau7,78 netBosTau7,88 netBosTau7,187 netBosTau7,475 netBosTau7,487 netBosTau7,510 netBosTau7,528 netBosTau7,543 netBosTau7,560 netBosTau7,697 netBosTau7,828 netHg19,76 netHg19,86 netHg19,185 netHg19,472 netHg19,484 netHg19,507 netHg19,525 netHg19,540 netHg19,557 netHg19,694 netHg19,825 netMm9,76 netMm9,86 netMm9,185 netMm9,472 netMm9,484 netMm9,507 netMm9,525 netMm9,540 netMm9,557 netMm9,694 netMm9,825 netMonDom5,76 netMonDom5,86 netMonDom5,185 netMonDom5,472 netMonDom5,484 netMonDom5,507 netMonDom5,525 netMonDom5,540 netMonDom5,557 netMonDom5,694 netMonDom5,825 xenoMrna,441 gapless chainBosTau7,640 chainHg19,637 chainMm9,637 chainMonDom5,637 chainNetBosTau7,643 chainNetHg19,640 chainNetMm9,640 chainNetMonDom5,640 netBosTau7,640 netHg19,637 netMm9,637 netMonDom5,637 gaps chainBosTau7,84 chainBosTau7,95 chainBosTau7,106 chainBosTau7,140 chainBosTau7,164 chainBosTau7,209 chainBosTau7,220 chainBosTau7,402 chainBosTau7,424 chainBosTau7,451 chainBosTau7,883 chainBosTau7,889 chainHg19,82 chainHg19,93 chainHg19,104 chainHg19,138 chainHg19,162 chainHg19,207 chainHg19,218 chainHg19,399 chainHg19,421 chainHg19,448 chainHg19,880 chainHg19,886 chainMm9,82 chainMm9,93 chainMm9,104 chainMm9,138 chainMm9,162 chainMm9,207 chainMm9,218 chainMm9,399 chainMm9,421 chainMm9,448 chainMm9,880 chainMm9,886 chainMonDom5,82 chainMonDom5,93 chainMonDom5,104 chainMonDom5,138 chainMonDom5,162 chainMonDom5,207 chainMonDom5,218 chainMonDom5,399 chainMonDom5,421 chainMonDom5,448 chainMonDom5,880 chainMonDom5,886 chainNetBosTau7,87 chainNetBosTau7,98 chainNetBosTau7,109 chainNetBosTau7,143 chainNetBosTau7,167 chainNetBosTau7,212 chainNetBosTau7,223 chainNetBosTau7,405 chainNetBosTau7,427 chainNetBosTau7,454 chainNetBosTau7,886 chainNetBosTau7,892 chainNetHg19,85 chainNetHg19,96 chainNetHg19,107 chainNetHg19,141 chainNetHg19,165 chainNetHg19,210 chainNetHg19,221 chainNetHg19,402 chainNetHg19,424 chainNetHg19,451 chainNetHg19,883 chainNetHg19,889 chainNetMm9,85 chainNetMm9,96 chainNetMm9,107 chainNetMm9,141 chainNetMm9,165 chainNetMm9,210 chainNetMm9,221 chainNetMm9,402 chainNetMm9,424 chainNetMm9,451 chainNetMm9,883 chainNetMm9,889 chainNetMonDom5,85 chainNetMonDom5,96 chainNetMonDom5,107 chainNetMonDom5,141 chainNetMonDom5,165 chainNetMonDom5,210 chainNetMonDom5,221 chainNetMonDom5,402 chainNetMonDom5,424 chainNetMonDom5,451 chainNetMonDom5,883 chainNetMonDom5,889 gap,11 gap,31 gap,39 gap,48 gap,104 gap,164 gold,12 gold,84 netBosTau7,84 netBosTau7,95 netBosTau7,106 netBosTau7,140 netBosTau7,164 netBosTau7,209 netBosTau7,220 netBosTau7,402 netBosTau7,424 netBosTau7,451 netBosTau7,883 netBosTau7,889 netHg19,82 netHg19,93 netHg19,104 netHg19,138 netHg19,162 netHg19,207 netHg19,218 netHg19,399 netHg19,421 netHg19,448 netHg19,880 netHg19,886 netMm9,82 netMm9,93 netMm9,104 netMm9,138 netMm9,162 netMm9,207 netMm9,218 netMm9,399 netMm9,421 netMm9,448 netMm9,880 netMm9,886 netMonDom5,82 netMonDom5,93 netMonDom5,104 netMonDom5,138 netMonDom5,162 netMonDom5,207 netMonDom5,218 netMonDom5,399 netMonDom5,421 netMonDom5,448 netMonDom5,880 netMonDom5,886 gardiner-garden cpgIslandExt,376 cpgIslandExt,604 cpgIslandExtUnmasked,379 cpgIslandExtUnmasked,607 cpgIslandSuper,376 cpgIslandSuper,604 gary microsat,111 simpleRepeat,71 gasparre numtS,550 numtS,588 numtSAssembled,552 numtSAssembled,590 numtSMitochondrion,554 numtSMitochondrion,592 numtSeq2012,553 numtSeq2012,591 gc cpgIslandExt,262 cpgIslandExtUnmasked,265 cpgIslandSuper,262 gc5Base,1 gc5Base,3 gc5Base,13 gc5Base,30 gca_000003025.2 gap,23 gold,24 genbank est,22 est,646 est,757 est,781 intronEst,24 intronEst,727 intronEst,841 intronEst,865 mrna,6 mrna,20 mrna,384 mrna,474 mrna,498 xenoMrna,6 xenoMrna,23 xenoMrna,549 xenoMrna,573 gene augustusGene,5 augustusGene,10 augustusGene,40 augustusGene,112 augustusGene,157 augustusGene,163 augustusGene,305 augustusGene,320 blastHg18KG,11 cpgIslandExt,145 cpgIslandExtUnmasked,148 cpgIslandSuper,145 ensGene,14 ensGene,18 ensGene,30 ensGene,46 ensGene,65 ensGene,162 nscanGene,3 nscanGene,7 nscanGene,13 nscanGene,18 nscanGene,57 nscanGene,168 nscanGene,238 nscanGene,255 tRNAs,11 tRNAs,141 xenoRefGene,8 xenoRefGene,52 xenoRefGene,106 xenoRefGene,121 xenoRefGene,126 xenoRefGene,154 xenoRefGene,183 gene-rich gc5Base,36 genepred ensGene,83 general est,529 gap,119 intronEst,610 generally rmsk,72 generate est,640 intronEst,721 nestedRepeats,261 nestedRepeats,320 nscanGene,54 rmsk,343 generated cpgIslandExt,588 cpgIslandExtUnmasked,591 cpgIslandSuper,588 ensGene,21 nestedRepeats,282 rmsk,289 xenoRefGene,288 generating augustusGene,189 generation numtS,29 numtSAssembled,31 numtSMitochondrion,33 numtSeq2012,32 genes augustusGene,8 augustusGene,44 blastHg18KG,9 blastHg18KG,27 blastHg18KG,33 blastHg18KG,44 cpgIslandExt,20 cpgIslandExt,23 cpgIslandExtUnmasked,23 cpgIslandExtUnmasked,26 cpgIslandSuper,20 cpgIslandSuper,23 ensGene,2 ensGene,4 ensGene,12 ensGene,34 ensGene,99 est,42 intronEst,54 nscanGene,5 simpleRepeat,41 tRNAs,2 tRNAs,5 tRNAs,9 tRNAs,18 tRNAs,174 tRNAs,244 tRNAs,286 tRNAs,304 tRNAs,376 tRNAs,424 tRNAs,453 tRNAs,485 xenoRefGene,5 xenoRefGene,6 xenoRefGene,18 xenoRefGene,192 xenoRefGene,200 xenoRefGene,211 genet nestedRepeats,354 nestedRepeats,386 nestedRepeats,408 rmsk,377 rmsk,409 rmsk,431 genetic nestedRepeats,52 rmsk,88 genome augustusGene,31 blastHg18KG,51 chainBosTau7,20 chainBosTau7,75 chainBosTau7,204 chainBosTau7,277 chainBosTau7,290 chainBosTau7,782 chainBosTau7,1103 chainHg19,19 chainHg19,73 chainHg19,202 chainHg19,275 chainHg19,288 chainHg19,779 chainHg19,1100 chainMm9,19 chainMm9,73 chainMm9,202 chainMm9,275 chainMm9,288 chainMm9,779 chainMm9,1100 chainMonDom5,19 chainMonDom5,73 chainMonDom5,202 chainMonDom5,275 chainMonDom5,288 chainMonDom5,779 chainMonDom5,1100 chainNetBosTau7,23 chainNetBosTau7,78 chainNetBosTau7,207 chainNetBosTau7,280 chainNetBosTau7,293 chainNetBosTau7,785 chainNetBosTau7,1106 chainNetHg19,22 chainNetHg19,76 chainNetHg19,205 chainNetHg19,278 chainNetHg19,291 chainNetHg19,782 chainNetHg19,1103 chainNetMm9,22 chainNetMm9,76 chainNetMm9,205 chainNetMm9,278 chainNetMm9,291 chainNetMm9,782 chainNetMm9,1103 chainNetMonDom5,22 chainNetMonDom5,76 chainNetMonDom5,205 chainNetMonDom5,278 chainNetMonDom5,291 chainNetMonDom5,782 chainNetMonDom5,1103 cpgIslandExt,164 cpgIslandExt,302 cpgIslandExtUnmasked,167 cpgIslandExtUnmasked,305 cpgIslandSuper,164 cpgIslandSuper,302 ensGene,171 ensGene,199 est,25 est,651 est,804 gap,27 gold,28 gold,31 gold,51 intronEst,27 intronEst,37 intronEst,732 intronEst,888 mrna,23 mrna,391 mrna,521 nestedRepeats,405 netBosTau7,20 netBosTau7,75 netBosTau7,204 netBosTau7,277 netBosTau7,290 netBosTau7,782 netBosTau7,1103 netHg19,19 netHg19,73 netHg19,202 netHg19,275 netHg19,288 netHg19,779 netHg19,1100 netMm9,19 netMm9,73 netMm9,202 netMm9,275 netMm9,288 netMm9,779 netMm9,1100 netMonDom5,19 netMonDom5,73 netMonDom5,202 netMonDom5,275 netMonDom5,288 netMonDom5,779 netMonDom5,1100 nscanGene,44 nscanGene,64 nscanGene,91 nscanGene,206 nscanGene,261 nscanGene,263 numtS,161 numtS,170 numtS,193 numtS,283 numtS,290 numtS,325 numtS,381 numtS,416 numtS,531 numtS,605 numtSAssembled,163 numtSAssembled,172 numtSAssembled,195 numtSAssembled,285 numtSAssembled,292 numtSAssembled,327 numtSAssembled,383 numtSAssembled,418 numtSAssembled,533 numtSAssembled,607 numtSMitochondrion,165 numtSMitochondrion,174 numtSMitochondrion,197 numtSMitochondrion,287 numtSMitochondrion,294 numtSMitochondrion,329 numtSMitochondrion,385 numtSMitochondrion,420 numtSMitochondrion,535 numtSMitochondrion,609 numtSeq2012,164 numtSeq2012,173 numtSeq2012,196 numtSeq2012,286 numtSeq2012,293 numtSeq2012,328 numtSeq2012,384 numtSeq2012,419 numtSeq2012,534 numtSeq2012,608 rmsk,428 xenoMrna,466 xenoMrna,596 xenoRefGene,223 xenoRefGene,306 genomes chainBosTau7,26 chainBosTau7,585 chainBosTau7,1065 chainHg19,25 chainHg19,582 chainHg19,1062 chainMm9,25 chainMm9,582 chainMm9,1062 chainMonDom5,25 chainMonDom5,582 chainMonDom5,1062 chainNetBosTau7,29 chainNetBosTau7,588 chainNetBosTau7,1068 chainNetHg19,28 chainNetHg19,585 chainNetHg19,1065 chainNetMm9,28 chainNetMm9,585 chainNetMm9,1065 chainNetMonDom5,28 chainNetMonDom5,585 chainNetMonDom5,1065 cpgIslandExt,612 cpgIslandExtUnmasked,615 cpgIslandSuper,612 nestedRepeats,369 nestedRepeats,383 netBosTau7,26 netBosTau7,585 netBosTau7,1065 netHg19,25 netHg19,582 netHg19,1062 netMm9,25 netMm9,582 netMm9,1062 netMonDom5,25 netMonDom5,582 netMonDom5,1062 rmsk,392 rmsk,406 xenoRefGene,375 genomic chainBosTau7,494 chainBosTau7,1017 chainBosTau7,1033 chainHg19,491 chainHg19,1014 chainHg19,1030 chainMm9,491 chainMm9,1014 chainMm9,1030 chainMonDom5,491 chainMonDom5,1014 chainMonDom5,1030 chainNetBosTau7,497 chainNetBosTau7,1020 chainNetBosTau7,1036 chainNetHg19,494 chainNetHg19,1017 chainNetHg19,1033 chainNetMm9,494 chainNetMm9,1017 chainNetMm9,1033 chainNetMonDom5,494 chainNetMonDom5,1017 chainNetMonDom5,1033 est,88 est,406 est,607 est,717 intronEst,72 intronEst,169 intronEst,487 intronEst,688 intronEst,798 mrna,343 mrna,433 netBosTau7,494 netBosTau7,1017 netBosTau7,1033 netHg19,491 netHg19,1014 netHg19,1030 netMm9,491 netMm9,1014 netMm9,1030 netMonDom5,491 netMonDom5,1014 netMonDom5,1030 nscanGene,235 numtS,21 numtS,65 numtSAssembled,23 numtSAssembled,67 numtSMitochondrion,25 numtSMitochondrion,69 numtSeq2012,24 numtSeq2012,68 tRNAs,108 tRNAs,379 tRNAs,426 tRNAs,455 tRNAs,487 xenoMrna,100 xenoMrna,418 xenoMrna,508 xenoRefGene,162 xenoRefGene,273 genomics chainBosTau7,12 chainHg19,11 chainMm9,11 chainMonDom5,11 chainNetBosTau7,15 chainNetBosTau7Viewchain,13 chainNetBosTau7Viewnet,13 chainNetHg19,14 chainNetHg19Viewchain,12 chainNetHg19Viewnet,12 chainNetMm9,14 chainNetMm9Viewchain,12 chainNetMm9Viewnet,12 chainNetMonDom5,14 chainNetMonDom5Viewchain,12 chainNetMonDom5Viewnet,12 netBosTau7,12 netHg19,11 netMm9,11 netMonDom5,11 nscanGene,26 nscanGene,121 numtS,122 numtS,572 numtS,608 numtSAssembled,124 numtSAssembled,574 numtSAssembled,610 numtSMitochondrion,126 numtSMitochondrion,576 numtSMitochondrion,612 numtSeq2012,125 numtSeq2012,575 numtSeq2012,611 genuine intronEst,111 gigabases tRNAs,96 giri nestedRepeats,56 nestedRepeats,310 rmsk,92 rmsk,333 gish blastHg18KG,155 give xenoMrna,110 go est,414 est,435 intronEst,495 intronEst,516 mrna,351 mrna,374 xenoMrna,426 xenoMrna,449 xenoRefGene,179 gold gold,79 gold,93 gr xenoRefGene,320 graph gc5Base,59 gc5Base,78 graphical chainBosTau7,441 chainHg19,438 chainMm9,438 chainMonDom5,438 chainNetBosTau7,444 chainNetHg19,441 chainNetMm9,441 chainNetMonDom5,441 gold,117 netBosTau7,441 netHg19,438 netMm9,438 netMonDom5,438 rmsk,211 grch37 chainHg19,6 chainHg19,68 chainHg19,302 chainNetHg19,7 chainNetHg19,71 chainNetHg19,305 chainNetHg19Viewchain,5 chainNetHg19Viewnet,5 netHg19,6 netHg19,68 netHg19,302 greater cpgIslandExt,267 cpgIslandExt,269 cpgIslandExt,274 cpgIslandExtUnmasked,270 cpgIslandExtUnmasked,272 cpgIslandExtUnmasked,277 cpgIslandSuper,267 cpgIslandSuper,269 cpgIslandSuper,274 green cpgIslandExt,10 cpgIslandExtUnmasked,13 cpgIslandSuper,10 nestedRepeats,328 rmsk,351 grey tRNAs,206 gross nscanGene,159 group augustusGene,198 augustusGene,235 chainBosTau7,632 chainHg19,629 chainMm9,629 chainMonDom5,629 chainNetBosTau7,635 chainNetHg19,632 chainNetMm9,632 chainNetMonDom5,632 netBosTau7,632 netHg19,629 netMm9,629 netMonDom5,629 nscanGene,122 numtS,89 numtS,131 numtSAssembled,91 numtSAssembled,133 numtSMitochondrion,93 numtSMitochondrion,135 numtSeq2012,92 numtSeq2012,134 groups augustusGene,194 gs cpgIslandExt,294 cpgIslandExtUnmasked,297 cpgIslandSuper,294 gt cpgIslandExt,422 cpgIslandExt,488 cpgIslandExtUnmasked,425 cpgIslandExtUnmasked,491 cpgIslandSuper,422 cpgIslandSuper,488 intronEst,88 tRNAs,165 gtf ensGene,103 gtrnadb tRNAs,111 tRNAs,332 tRNAs,370 guanine cpgIslandExt,52 cpgIslandExtUnmasked,55 cpgIslandSuper,52 gc5Base,21 guess tRNAs,256 guides tRNAs,261 haas nscanGene,180 hannick nscanGene,191 hard cpgIslandExt,416 cpgIslandExtUnmasked,419 cpgIslandSuper,416 hardison chainBosTau7,936 chainBosTau7,1093 chainHg19,933 chainHg19,1090 chainMm9,933 chainMm9,1090 chainMonDom5,933 chainMonDom5,1090 chainNetBosTau7,939 chainNetBosTau7,1096 chainNetHg19,936 chainNetHg19,1093 chainNetMm9,936 chainNetMm9,1093 chainNetMonDom5,936 chainNetMonDom5,1093 netBosTau7,936 netBosTau7,1093 netHg19,933 netHg19,1090 netMm9,933 netMm9,1090 netMonDom5,933 netMonDom5,1090 harris chainBosTau7,1010 chainHg19,1007 chainMm9,1007 chainMonDom5,1007 chainNetBosTau7,1013 chainNetHg19,1010 chainNetMm9,1010 chainNetMonDom5,1010 netBosTau7,1010 netHg19,1007 netMm9,1007 netMonDom5,1007 hart xenoRefGene,331 has est,114 intronEst,195 mrna,60 nestedRepeats,246 numtS,98 numtS,132 numtSAssembled,100 numtSAssembled,134 numtSMitochondrion,102 numtSMitochondrion,136 numtSeq2012,101 numtSeq2012,135 xenoMrna,135 xenoRefGene,66 haussler augustusGene,292 chainBosTau7,971 chainBosTau7,1051 chainBosTau7,1095 chainHg19,968 chainHg19,1048 chainHg19,1092 chainMm9,968 chainMm9,1048 chainMm9,1092 chainMonDom5,968 chainMonDom5,1048 chainMonDom5,1092 chainNetBosTau7,974 chainNetBosTau7,1054 chainNetBosTau7,1098 chainNetHg19,971 chainNetHg19,1051 chainNetHg19,1095 chainNetMm9,971 chainNetMm9,1051 chainNetMm9,1095 chainNetMonDom5,971 chainNetMonDom5,1051 chainNetMonDom5,1095 netBosTau7,971 netBosTau7,1051 netBosTau7,1095 netHg19,968 netHg19,1048 netHg19,1092 netMm9,968 netMm9,1048 netMm9,1092 netMonDom5,968 netMonDom5,1048 netMonDom5,1092 have chainBosTau7,570 chainHg19,567 chainMm9,567 chainMonDom5,567 chainNetBosTau7,573 chainNetHg19,570 chainNetMm9,570 chainNetMonDom5,570 intronEst,6 intronEst,87 nestedRepeats,88 netBosTau7,570 netHg19,567 netMm9,567 netMonDom5,567 numtS,84 numtS,503 numtSAssembled,86 numtSAssembled,505 numtSMitochondrion,88 numtSMitochondrion,507 numtSeq2012,87 numtSeq2012,506 rmsk,69 rmsk,108 tRNAs,181 tRNAs,214 having cpgIslandExt,138 cpgIslandExtUnmasked,141 cpgIslandSuper,138 est,690 est,699 intronEst,771 intronEst,780 mrna,406 mrna,415 xenoMrna,480 xenoMrna,490 xenoRefGene,246 xenoRefGene,255 help cpgIslandExt,546 cpgIslandExtUnmasked,549 cpgIslandSuper,546 ensGene,133 gc5Base,61 helpful est,142 intronEst,223 mrna,88 xenoMrna,163 helps cpgIslandExt,74 cpgIslandExtUnmasked,77 cpgIslandSuper,74 hence numtS,78 numtSAssembled,80 numtSMitochondrion,82 numtSeq2012,81 xenoMrna,89 here numtS,399 numtSAssembled,401 numtSMitochondrion,403 numtSeq2012,402 rmsk,127 xenoMrna,84 heterochromatic gap,38 heteroplasmic numtS,82 numtSAssembled,84 numtSMitochondrion,86 numtSeq2012,85 hg18 blastHg18KG,31 hg19 chainHg19,7 chainHg19,69 chainHg19,303 chainNetHg19,8 chainNetHg19,72 chainNetHg19,306 chainNetHg19Viewchain,6 chainNetHg19Viewnet,6 netHg19,7 netHg19,69 netHg19,303 nscanGene,103 hgdownload.soe.ucsc.edu cpgIslandExt,576 cpgIslandExtUnmasked,579 cpgIslandSuper,576 hiatt xenoRefGene,321 hidden augustusGene,324 hide xenoRefGene,190 hierarchy chainBosTau7,819 chainHg19,816 chainMm9,816 chainMonDom5,816 chainNetBosTau7,822 chainNetHg19,819 chainNetMm9,819 chainNetMonDom5,819 netBosTau7,819 netHg19,816 netMm9,816 netMonDom5,816 high gc5Base,29 numtS,151 numtSAssembled,153 numtSMitochondrion,155 numtSeq2012,154 higher chainBosTau7,851 chainHg19,848 chainMm9,848 chainMonDom5,848 chainNetBosTau7,854 chainNetHg19,851 chainNetMm9,851 chainNetMonDom5,851 cpgIslandExt,157 cpgIslandExtUnmasked,160 cpgIslandSuper,157 netBosTau7,851 netHg19,848 netMm9,848 netMonDom5,848 rmsk,230 higher-level chainBosTau7,868 chainHg19,865 chainMm9,865 chainMonDom5,865 chainNetBosTau7,871 chainNetHg19,868 chainNetMm9,868 chainNetMonDom5,868 netBosTau7,868 netHg19,865 netMm9,865 netMonDom5,865 higher-scoring chainBosTau7,812 chainBosTau7,831 chainHg19,809 chainHg19,828 chainMm9,809 chainMm9,828 chainMonDom5,809 chainMonDom5,828 chainNetBosTau7,815 chainNetBosTau7,834 chainNetHg19,812 chainNetHg19,831 chainNetMm9,812 chainNetMm9,831 chainNetMonDom5,812 chainNetMonDom5,831 netBosTau7,812 netBosTau7,831 netHg19,809 netHg19,828 netMm9,809 netMm9,828 netMonDom5,809 netMonDom5,828 highest est,692 intronEst,773 mrna,408 xenoMrna,482 xenoRefGene,248 highest-scoring chainBosTau7,393 chainBosTau7,778 chainHg19,390 chainHg19,775 chainMm9,390 chainMm9,775 chainMonDom5,390 chainMonDom5,775 chainNetBosTau7,396 chainNetBosTau7,781 chainNetHg19,393 chainNetHg19,778 chainNetMm9,393 chainNetMm9,778 chainNetMonDom5,393 chainNetMonDom5,778 netBosTau7,393 netBosTau7,778 netHg19,390 netHg19,775 netMm9,390 netMm9,775 netMonDom5,390 netMonDom5,775 highlight est,333 gc5Base,49 intronEst,414 mrna,279 xenoMrna,354 highlighted est,303 est,321 intronEst,384 intronEst,402 mrna,249 mrna,267 xenoMrna,324 xenoMrna,342 highly microsat,40 tRNAs,69 hillier cpgIslandExt,601 cpgIslandExtUnmasked,604 cpgIslandSuper,601 hinrichs chainBosTau7,1047 chainHg19,1044 chainMm9,1044 chainMonDom5,1044 chainNetBosTau7,1050 chainNetHg19,1047 chainNetMm9,1047 chainNetMonDom5,1047 netBosTau7,1047 netHg19,1044 netMm9,1044 netMonDom5,1044 hiram gc5Base,82 his chainBosTau7,945 chainHg19,942 chainMm9,942 chainMonDom5,942 chainNetBosTau7,948 chainNetHg19,945 chainNetMm9,945 chainNetMonDom5,945 netBosTau7,945 netHg19,942 netMm9,942 netMonDom5,942 homology nscanGene,236 honeybee1 augustusGene,217 horizontal nestedRepeats,130 nestedRepeats,150 hou chainBosTau7,924 chainHg19,921 chainMm9,921 chainMonDom5,921 chainNetBosTau7,927 chainNetHg19,924 chainNetMm9,924 chainNetMonDom5,924 netBosTau7,924 netHg19,921 netMm9,921 netMonDom5,921 housekeeping cpgIslandExt,22 cpgIslandExtUnmasked,25 cpgIslandSuper,22 how chainBosTau7,879 chainBosTau7,896 chainHg19,876 chainHg19,893 chainMm9,876 chainMm9,893 chainMonDom5,876 chainMonDom5,893 chainNetBosTau7,882 chainNetBosTau7,899 chainNetHg19,879 chainNetHg19,896 chainNetMm9,879 chainNetMm9,896 chainNetMonDom5,879 chainNetMonDom5,896 netBosTau7,879 netBosTau7,896 netHg19,876 netHg19,893 netMm9,876 netMm9,893 netMonDom5,876 netMonDom5,893 rmsk,121 however cpgIslandExt,96 cpgIslandExtUnmasked,99 cpgIslandSuper,96 hsps numtS,154 numtS,186 numtS,252 numtS,306 numtS,321 numtS,377 numtS,437 numtSAssembled,156 numtSAssembled,188 numtSAssembled,254 numtSAssembled,308 numtSAssembled,323 numtSAssembled,379 numtSAssembled,439 numtSMitochondrion,158 numtSMitochondrion,190 numtSMitochondrion,256 numtSMitochondrion,310 numtSMitochondrion,325 numtSMitochondrion,381 numtSMitochondrion,441 numtSeq2012,157 numtSeq2012,189 numtSeq2012,255 numtSeq2012,309 numtSeq2012,324 numtSeq2012,380 numtSeq2012,440 http cpgIslandExt,575 cpgIslandExtUnmasked,578 cpgIslandSuper,575 nestedRepeats,332 rmsk,355 hubbard ensGene,51 ensGene,175 hubley nestedRepeats,308 nestedRepeats,326 rmsk,331 rmsk,349 human augustusGene,205 augustusGene,210 augustusGene,276 blastHg18KG,1 blastHg18KG,3 blastHg18KG,42 blastHg18KG,50 chainBosTau7,1064 chainHg19,1 chainHg19,3 chainHg19,65 chainHg19,96 chainHg19,148 chainHg19,266 chainHg19,291 chainHg19,572 chainHg19,620 chainHg19,1061 chainMm9,1061 chainMonDom5,1061 chainNetBosTau7,1067 chainNetHg19,1 chainNetHg19,4 chainNetHg19,68 chainNetHg19,99 chainNetHg19,151 chainNetHg19,269 chainNetHg19,294 chainNetHg19,575 chainNetHg19,623 chainNetHg19,1064 chainNetHg19Viewchain,2 chainNetHg19Viewnet,2 chainNetMm9,1064 chainNetMonDom5,1064 nestedRepeats,404 netBosTau7,1064 netHg19,1 netHg19,3 netHg19,65 netHg19,96 netHg19,148 netHg19,266 netHg19,291 netHg19,572 netHg19,620 netHg19,1061 netMm9,1061 netMonDom5,1061 nscanGene,102 numtS,569 numtS,594 numtSAssembled,571 numtSAssembled,596 numtSMitochondrion,573 numtSMitochondrion,598 numtSeq2012,572 numtSeq2012,597 rmsk,427 human-mouse chainBosTau7,1099 chainHg19,1096 chainMm9,1096 chainMonDom5,1096 chainNetBosTau7,1102 chainNetHg19,1099 chainNetMm9,1099 chainNetMonDom5,1099 netBosTau7,1099 netHg19,1096 netMm9,1096 netMonDom5,1096 hybrid gold,35 hybridizes est,497 intronEst,578 hypothesis numtS,26 numtSAssembled,28 numtSMitochondrion,30 numtSeq2012,29 i est,750 est,774 intronEst,834 intronEst,858 mrna,467 mrna,491 nscanGene,227 xenoMrna,542 xenoMrna,566 i.e intronEst,70 tRNAs,148 id nestedRepeats,10 nestedRepeats,106 identification tRNAs,480 identified blastHg18KG,28 chainBosTau7,940 chainHg19,937 chainMm9,937 chainMonDom5,937 chainNetBosTau7,943 chainNetHg19,940 chainNetMm9,940 chainNetMonDom5,940 est,696 intronEst,777 netBosTau7,940 netHg19,937 netMm9,937 netMonDom5,937 tRNAs,6 xenoRefGene,252 identifying cpgIslandExt,249 cpgIslandExtUnmasked,252 cpgIslandSuper,249 tRNAs,421 identity est,694 est,702 est,714 intronEst,775 intronEst,783 intronEst,795 microsat,71 mrna,410 mrna,418 mrna,430 nestedRepeats,187 nestedRepeats,222 xenoMrna,484 xenoMrna,493 xenoMrna,505 xenoRefGene,250 xenoRefGene,258 xenoRefGene,270 if est,276 est,288 est,304 est,340 est,357 gap,57 intronEst,357 intronEst,369 intronEst,385 intronEst,421 intronEst,438 mrna,222 mrna,234 mrna,250 mrna,286 mrna,303 nestedRepeats,137 xenoMrna,297 xenoMrna,309 xenoMrna,325 xenoMrna,361 xenoMrna,378 xenoRefGene,203 ii215-25 augustusGene,338 images tRNAs,319 immediately cpgIslandExt,48 cpgIslandExtUnmasked,51 cpgIslandSuper,48 imperfect simpleRepeat,19 implementation nscanGene,136 implemented numtS,601 numtSAssembled,603 numtSMitochondrion,605 numtSeq2012,604 improve augustusGene,302 nscanGene,167 improved chainBosTau7,1013 chainHg19,1010 chainMm9,1010 chainMonDom5,1010 chainNetBosTau7,1016 chainNetHg19,1013 chainNetMm9,1013 chainNetMonDom5,1013 netBosTau7,1013 netHg19,1010 netMm9,1010 netMonDom5,1010 tRNAs,448 improves nscanGene,260 improving nscanGene,203 in augustusGene,101 blastHg18KG,29 chainBosTau7,32 chainBosTau7,96 chainBosTau7,116 chainBosTau7,148 chainBosTau7,155 chainBosTau7,169 chainBosTau7,188 chainBosTau7,191 chainBosTau7,230 chainBosTau7,251 chainBosTau7,296 chainBosTau7,330 chainBosTau7,360 chainBosTau7,372 chainBosTau7,381 chainBosTau7,399 chainBosTau7,404 chainBosTau7,413 chainBosTau7,425 chainBosTau7,439 chainBosTau7,481 chainBosTau7,498 chainBosTau7,529 chainBosTau7,547 chainBosTau7,561 chainBosTau7,596 chainBosTau7,692 chainBosTau7,780 chainBosTau7,821 chainBosTau7,829 chainBosTau7,845 chainBosTau7,878 chainBosTau7,890 chainBosTau7,1060 chainHg19,31 chainHg19,94 chainHg19,114 chainHg19,146 chainHg19,153 chainHg19,167 chainHg19,186 chainHg19,189 chainHg19,228 chainHg19,249 chainHg19,294 chainHg19,327 chainHg19,357 chainHg19,369 chainHg19,378 chainHg19,396 chainHg19,401 chainHg19,410 chainHg19,422 chainHg19,436 chainHg19,478 chainHg19,495 chainHg19,526 chainHg19,544 chainHg19,558 chainHg19,593 chainHg19,689 chainHg19,777 chainHg19,818 chainHg19,826 chainHg19,842 chainHg19,875 chainHg19,887 chainHg19,1057 chainMm9,31 chainMm9,94 chainMm9,114 chainMm9,146 chainMm9,153 chainMm9,167 chainMm9,186 chainMm9,189 chainMm9,228 chainMm9,249 chainMm9,294 chainMm9,327 chainMm9,357 chainMm9,369 chainMm9,378 chainMm9,396 chainMm9,401 chainMm9,410 chainMm9,422 chainMm9,436 chainMm9,478 chainMm9,495 chainMm9,526 chainMm9,544 chainMm9,558 chainMm9,593 chainMm9,689 chainMm9,777 chainMm9,818 chainMm9,826 chainMm9,842 chainMm9,875 chainMm9,887 chainMm9,1057 chainMonDom5,31 chainMonDom5,94 chainMonDom5,114 chainMonDom5,146 chainMonDom5,153 chainMonDom5,167 chainMonDom5,186 chainMonDom5,189 chainMonDom5,228 chainMonDom5,249 chainMonDom5,294 chainMonDom5,327 chainMonDom5,357 chainMonDom5,369 chainMonDom5,378 chainMonDom5,396 chainMonDom5,401 chainMonDom5,410 chainMonDom5,422 chainMonDom5,436 chainMonDom5,478 chainMonDom5,495 chainMonDom5,526 chainMonDom5,544 chainMonDom5,558 chainMonDom5,593 chainMonDom5,689 chainMonDom5,777 chainMonDom5,818 chainMonDom5,826 chainMonDom5,842 chainMonDom5,875 chainMonDom5,887 chainMonDom5,1057 chainNetBosTau7,35 chainNetBosTau7,99 chainNetBosTau7,119 chainNetBosTau7,151 chainNetBosTau7,158 chainNetBosTau7,172 chainNetBosTau7,191 chainNetBosTau7,194 chainNetBosTau7,233 chainNetBosTau7,254 chainNetBosTau7,299 chainNetBosTau7,333 chainNetBosTau7,363 chainNetBosTau7,375 chainNetBosTau7,384 chainNetBosTau7,402 chainNetBosTau7,407 chainNetBosTau7,416 chainNetBosTau7,428 chainNetBosTau7,442 chainNetBosTau7,484 chainNetBosTau7,501 chainNetBosTau7,532 chainNetBosTau7,550 chainNetBosTau7,564 chainNetBosTau7,599 chainNetBosTau7,695 chainNetBosTau7,783 chainNetBosTau7,824 chainNetBosTau7,832 chainNetBosTau7,848 chainNetBosTau7,881 chainNetBosTau7,893 chainNetBosTau7,1063 chainNetHg19,34 chainNetHg19,97 chainNetHg19,117 chainNetHg19,149 chainNetHg19,156 chainNetHg19,170 chainNetHg19,189 chainNetHg19,192 chainNetHg19,231 chainNetHg19,252 chainNetHg19,297 chainNetHg19,330 chainNetHg19,360 chainNetHg19,372 chainNetHg19,381 chainNetHg19,399 chainNetHg19,404 chainNetHg19,413 chainNetHg19,425 chainNetHg19,439 chainNetHg19,481 chainNetHg19,498 chainNetHg19,529 chainNetHg19,547 chainNetHg19,561 chainNetHg19,596 chainNetHg19,692 chainNetHg19,780 chainNetHg19,821 chainNetHg19,829 chainNetHg19,845 chainNetHg19,878 chainNetHg19,890 chainNetHg19,1060 chainNetMm9,34 chainNetMm9,97 chainNetMm9,117 chainNetMm9,149 chainNetMm9,156 chainNetMm9,170 chainNetMm9,189 chainNetMm9,192 chainNetMm9,231 chainNetMm9,252 chainNetMm9,297 chainNetMm9,330 chainNetMm9,360 chainNetMm9,372 chainNetMm9,381 chainNetMm9,399 chainNetMm9,404 chainNetMm9,413 chainNetMm9,425 chainNetMm9,439 chainNetMm9,481 chainNetMm9,498 chainNetMm9,529 chainNetMm9,547 chainNetMm9,561 chainNetMm9,596 chainNetMm9,692 chainNetMm9,780 chainNetMm9,821 chainNetMm9,829 chainNetMm9,845 chainNetMm9,878 chainNetMm9,890 chainNetMm9,1060 chainNetMonDom5,34 chainNetMonDom5,97 chainNetMonDom5,117 chainNetMonDom5,149 chainNetMonDom5,156 chainNetMonDom5,170 chainNetMonDom5,189 chainNetMonDom5,192 chainNetMonDom5,231 chainNetMonDom5,252 chainNetMonDom5,297 chainNetMonDom5,330 chainNetMonDom5,360 chainNetMonDom5,372 chainNetMonDom5,381 chainNetMonDom5,399 chainNetMonDom5,404 chainNetMonDom5,413 chainNetMonDom5,425 chainNetMonDom5,439 chainNetMonDom5,481 chainNetMonDom5,498 chainNetMonDom5,529 chainNetMonDom5,547 chainNetMonDom5,561 chainNetMonDom5,596 chainNetMonDom5,692 chainNetMonDom5,780 chainNetMonDom5,821 chainNetMonDom5,829 chainNetMonDom5,845 chainNetMonDom5,878 chainNetMonDom5,890 chainNetMonDom5,1060 cpgIslandExt,24 cpgIslandExt,58 cpgIslandExt,64 cpgIslandExt,87 cpgIslandExt,180 cpgIslandExt,189 cpgIslandExt,214 cpgIslandExt,297 cpgIslandExt,341 cpgIslandExt,375 cpgIslandExt,610 cpgIslandExtUnmasked,27 cpgIslandExtUnmasked,61 cpgIslandExtUnmasked,67 cpgIslandExtUnmasked,90 cpgIslandExtUnmasked,183 cpgIslandExtUnmasked,192 cpgIslandExtUnmasked,217 cpgIslandExtUnmasked,300 cpgIslandExtUnmasked,344 cpgIslandExtUnmasked,378 cpgIslandExtUnmasked,613 cpgIslandSuper,24 cpgIslandSuper,58 cpgIslandSuper,64 cpgIslandSuper,87 cpgIslandSuper,180 cpgIslandSuper,189 cpgIslandSuper,214 cpgIslandSuper,297 cpgIslandSuper,341 cpgIslandSuper,375 cpgIslandSuper,610 ctgPos2,25 ensGene,44 ensGene,57 ensGene,90 ensGene,97 ensGene,102 est,21 est,34 est,57 est,148 est,169 est,192 est,202 est,220 est,273 est,395 est,528 est,576 est,685 gap,12 gap,54 gap,118 gap,128 gap,143 gap,151 gap,157 gc5Base,5 gc5Base,26 gc5Base,43 gold,13 gold,55 gold,115 gold,124 intronEst,23 intronEst,46 intronEst,84 intronEst,98 intronEst,141 intronEst,229 intronEst,250 intronEst,273 intronEst,283 intronEst,301 intronEst,354 intronEst,476 intronEst,609 intronEst,657 intronEst,766 intronEst,802 microsat,42 microsat,49 mrna,19 mrna,38 mrna,94 mrna,115 mrna,138 mrna,148 mrna,166 mrna,219 mrna,401 nestedRepeats,61 nestedRepeats,64 nestedRepeats,75 nestedRepeats,115 nestedRepeats,156 nestedRepeats,167 nestedRepeats,241 nestedRepeats,339 nestedRepeats,367 nestedRepeats,381 nestedRepeats,402 netBosTau7,32 netBosTau7,96 netBosTau7,116 netBosTau7,148 netBosTau7,155 netBosTau7,169 netBosTau7,188 netBosTau7,191 netBosTau7,230 netBosTau7,251 netBosTau7,296 netBosTau7,330 netBosTau7,360 netBosTau7,372 netBosTau7,381 netBosTau7,399 netBosTau7,404 netBosTau7,413 netBosTau7,425 netBosTau7,439 netBosTau7,481 netBosTau7,498 netBosTau7,529 netBosTau7,547 netBosTau7,561 netBosTau7,596 netBosTau7,692 netBosTau7,780 netBosTau7,821 netBosTau7,829 netBosTau7,845 netBosTau7,878 netBosTau7,890 netBosTau7,1060 netHg19,31 netHg19,94 netHg19,114 netHg19,146 netHg19,153 netHg19,167 netHg19,186 netHg19,189 netHg19,228 netHg19,249 netHg19,294 netHg19,327 netHg19,357 netHg19,369 netHg19,378 netHg19,396 netHg19,401 netHg19,410 netHg19,422 netHg19,436 netHg19,478 netHg19,495 netHg19,526 netHg19,544 netHg19,558 netHg19,593 netHg19,689 netHg19,777 netHg19,818 netHg19,826 netHg19,842 netHg19,875 netHg19,887 netHg19,1057 netMm9,31 netMm9,94 netMm9,114 netMm9,146 netMm9,153 netMm9,167 netMm9,186 netMm9,189 netMm9,228 netMm9,249 netMm9,294 netMm9,327 netMm9,357 netMm9,369 netMm9,378 netMm9,396 netMm9,401 netMm9,410 netMm9,422 netMm9,436 netMm9,478 netMm9,495 netMm9,526 netMm9,544 netMm9,558 netMm9,593 netMm9,689 netMm9,777 netMm9,818 netMm9,826 netMm9,842 netMm9,875 netMm9,887 netMm9,1057 netMonDom5,31 netMonDom5,94 netMonDom5,114 netMonDom5,146 netMonDom5,153 netMonDom5,167 netMonDom5,186 netMonDom5,189 netMonDom5,228 netMonDom5,249 netMonDom5,294 netMonDom5,327 netMonDom5,357 netMonDom5,369 netMonDom5,378 netMonDom5,396 netMonDom5,401 netMonDom5,410 netMonDom5,422 netMonDom5,436 netMonDom5,478 netMonDom5,495 netMonDom5,526 netMonDom5,544 netMonDom5,558 netMonDom5,593 netMonDom5,689 netMonDom5,777 netMonDom5,818 netMonDom5,826 netMonDom5,842 netMonDom5,875 netMonDom5,887 netMonDom5,1057 nscanGene,31 nscanGene,41 nscanGene,142 nscanGene,155 numtS,19 numtS,32 numtS,254 numtS,528 numtSAssembled,21 numtSAssembled,34 numtSAssembled,256 numtSAssembled,530 numtSMitochondrion,23 numtSMitochondrion,36 numtSMitochondrion,258 numtSMitochondrion,532 numtSeq2012,22 numtSeq2012,35 numtSeq2012,257 numtSeq2012,531 rmsk,45 rmsk,63 rmsk,97 rmsk,100 rmsk,128 rmsk,139 rmsk,209 rmsk,270 rmsk,317 rmsk,362 rmsk,390 rmsk,404 rmsk,425 tRNAs,155 tRNAs,158 tRNAs,194 tRNAs,203 tRNAs,222 tRNAs,240 tRNAs,249 tRNAs,378 tRNAs,425 tRNAs,454 tRNAs,486 xenoMrna,22 xenoMrna,43 xenoMrna,66 xenoMrna,169 xenoMrna,190 xenoMrna,213 xenoMrna,223 xenoMrna,241 xenoMrna,294 xenoMrna,475 xenoRefGene,241 include est,130 est,335 est,359 intronEst,211 intronEst,416 intronEst,440 mrna,76 mrna,281 mrna,305 rmsk,159 rmsk,172 xenoMrna,151 xenoMrna,356 xenoMrna,380 included augustusGene,160 blastHg18KG,113 blastHg18KG,136 cpgIslandExt,306 cpgIslandExtUnmasked,309 cpgIslandSuper,306 includes rmsk,198 including est,5 intronEst,120 rmsk,188 inclusive numtS,125 numtSAssembled,127 numtSMitochondrion,129 numtSeq2012,128 indels microsat,74 indicate chainBosTau7,139 chainBosTau7,245 chainHg19,137 chainHg19,243 chainMm9,137 chainMm9,243 chainMonDom5,137 chainMonDom5,243 chainNetBosTau7,142 chainNetBosTau7,248 chainNetHg19,140 chainNetHg19,246 chainNetMm9,140 chainNetMm9,246 chainNetMonDom5,140 chainNetMonDom5,246 est,68 mrna,49 nestedRepeats,153 netBosTau7,139 netBosTau7,245 netHg19,137 netHg19,243 netMm9,137 netMm9,243 netMonDom5,137 netMonDom5,243 tRNAs,137 tRNAs,187 xenoMrna,54 indicates est,76 intronEst,147 intronEst,157 xenoMrna,71 xenoMrna,93 xenoRefGene,58 individual chainBosTau7,242 chainBosTau7,496 chainHg19,240 chainHg19,493 chainMm9,240 chainMm9,493 chainMonDom5,240 chainMonDom5,493 chainNetBosTau7,245 chainNetBosTau7,499 chainNetHg19,243 chainNetHg19,496 chainNetMm9,243 chainNetMm9,496 chainNetMonDom5,243 chainNetMonDom5,496 netBosTau7,242 netBosTau7,496 netHg19,240 netHg19,493 netMm9,240 netMm9,493 netMonDom5,240 netMonDom5,493 informant nscanGene,73 nscanGene,106 information augustusGene,36 blastHg18KG,149 chainBosTau7,459 chainBosTau7,472 chainBosTau7,478 chainBosTau7,846 chainHg19,456 chainHg19,469 chainHg19,475 chainHg19,843 chainMm9,456 chainMm9,469 chainMm9,475 chainMm9,843 chainMonDom5,456 chainMonDom5,469 chainMonDom5,475 chainMonDom5,843 chainNetBosTau7,462 chainNetBosTau7,475 chainNetBosTau7,481 chainNetBosTau7,849 chainNetHg19,459 chainNetHg19,472 chainNetHg19,478 chainNetHg19,846 chainNetMm9,459 chainNetMm9,472 chainNetMm9,478 chainNetMm9,846 chainNetMonDom5,459 chainNetMonDom5,472 chainNetMonDom5,478 chainNetMonDom5,846 cpgIslandExt,542 cpgIslandExtUnmasked,545 cpgIslandSuper,542 ensGene,26 ensGene,166 est,75 est,410 est,434 gc5Base,55 intronEst,156 intronEst,491 intronEst,515 microsat,97 mrna,347 mrna,373 nestedRepeats,53 nestedRepeats,301 netBosTau7,459 netBosTau7,472 netBosTau7,478 netBosTau7,846 netHg19,456 netHg19,469 netHg19,475 netHg19,843 netMm9,456 netMm9,469 netMm9,475 netMm9,843 netMonDom5,456 netMonDom5,469 netMonDom5,475 netMonDom5,843 nscanGene,48 rmsk,89 rmsk,324 simpleRepeat,58 xenoMrna,61 xenoMrna,422 xenoMrna,448 xenoRefGene,175 initial tRNAs,47 initiate rmsk,316 initio augustusGene,4 augustusGene,17 insert numtS,51 numtSAssembled,53 numtSMitochondrion,55 numtSeq2012,54 inserted chainBosTau7,572 chainBosTau7,902 chainHg19,569 chainHg19,899 chainMm9,569 chainMm9,899 chainMonDom5,569 chainMonDom5,899 chainNetBosTau7,575 chainNetBosTau7,905 chainNetHg19,572 chainNetHg19,902 chainNetMm9,572 chainNetMm9,902 chainNetMonDom5,572 chainNetMonDom5,902 netBosTau7,572 netBosTau7,902 netHg19,569 netHg19,899 netMm9,569 netMm9,899 netMonDom5,569 netMonDom5,899 numtS,18 numtSAssembled,20 numtSMitochondrion,22 numtSeq2012,21 insertion chainBosTau7,154 chainHg19,152 chainMm9,152 chainMonDom5,152 chainNetBosTau7,157 chainNetHg19,155 chainNetMm9,155 chainNetMonDom5,155 est,439 intronEst,520 mrna,378 netBosTau7,154 netHg19,152 netMm9,152 netMonDom5,152 rmsk,223 xenoMrna,453 insertions nestedRepeats,86 nestedRepeats,92 nscanGene,96 inspected tRNAs,228 inspection numtS,445 numtS,499 numtSAssembled,447 numtSAssembled,501 numtSMitochondrion,449 numtSMitochondrion,503 numtSeq2012,448 numtSeq2012,502 instead xenoRefGene,118 institute nestedRepeats,55 rmsk,91 instructions ensGene,124 integrated tRNAs,27 integrating nscanGene,234 integrator cpgIslandExt,526 cpgIslandExtUnmasked,529 cpgIslandSuper,526 ensGene,78 interactively cpgIslandExt,515 cpgIslandExtUnmasked,518 cpgIslandSuper,515 ensGene,70 international est,735 intronEst,819 mrna,452 xenoMrna,527 internet nestedRepeats,279 interpolation numtS,442 numtSAssembled,444 numtSMitochondrion,446 numtSeq2012,445 interrupted nestedRepeats,1 nestedRepeats,5 nestedRepeats,21 nestedRepeats,90 nestedRepeats,121 interspersed nestedRepeats,36 nestedRepeats,373 nestedRepeats,400 rmsk,26 rmsk,154 rmsk,162 rmsk,396 rmsk,423 into chainBosTau7,602 chainBosTau7,614 chainBosTau7,630 chainBosTau7,805 chainHg19,599 chainHg19,611 chainHg19,627 chainHg19,802 chainMm9,599 chainMm9,611 chainMm9,627 chainMm9,802 chainMonDom5,599 chainMonDom5,611 chainMonDom5,627 chainMonDom5,802 chainNetBosTau7,605 chainNetBosTau7,617 chainNetBosTau7,633 chainNetBosTau7,808 chainNetHg19,602 chainNetHg19,614 chainNetHg19,630 chainNetHg19,805 chainNetMm9,602 chainNetMm9,614 chainNetMm9,630 chainNetMm9,805 chainNetMonDom5,602 chainNetMonDom5,614 chainNetMonDom5,630 chainNetMonDom5,805 cpgIslandExt,105 cpgIslandExtUnmasked,108 cpgIslandSuper,105 est,252 est,457 est,464 est,609 intronEst,333 intronEst,538 intronEst,545 intronEst,690 mrna,198 netBosTau7,602 netBosTau7,614 netBosTau7,630 netBosTau7,805 netHg19,599 netHg19,611 netHg19,627 netHg19,802 netMm9,599 netMm9,611 netMm9,627 netMm9,802 netMonDom5,599 netMonDom5,611 netMonDom5,627 netMonDom5,802 nscanGene,237 numtS,52 numtSAssembled,54 numtSMitochondrion,56 numtSeq2012,55 tRNAs,309 xenoMrna,273 intractable gap,37 intron augustusGene,88 augustusGene,330 est,658 intronEst,69 intronEst,739 introns chainBosTau7,57 chainHg19,56 chainMm9,56 chainMonDom5,56 chainNetBosTau7,60 chainNetHg19,59 chainNetMm9,59 chainNetMonDom5,59 est,675 intronEst,756 netBosTau7,57 netHg19,56 netMm9,56 netMonDom5,56 inv chainBosTau7,534 chainHg19,531 chainMm9,531 chainMonDom5,531 chainNetBosTau7,537 chainNetHg19,534 chainNetMm9,534 chainNetMonDom5,534 netBosTau7,534 netHg19,531 netMm9,531 netMonDom5,531 inversions chainBosTau7,112 chainBosTau7,176 chainHg19,110 chainHg19,174 chainMm9,110 chainMm9,174 chainMonDom5,110 chainMonDom5,174 chainNetBosTau7,115 chainNetBosTau7,179 chainNetHg19,113 chainNetHg19,177 chainNetMm9,113 chainNetMm9,177 chainNetMonDom5,113 chainNetMonDom5,177 netBosTau7,112 netBosTau7,176 netHg19,110 netHg19,174 netMm9,110 netMm9,174 netMonDom5,110 netMonDom5,174 invertebrate xenoMrna,20 inverted chainBosTau7,864 chainHg19,861 chainMm9,861 chainMonDom5,861 chainNetBosTau7,867 chainNetHg19,864 chainNetMm9,864 chainNetMonDom5,864 netBosTau7,864 netHg19,861 netMm9,861 netMonDom5,861 involve chainBosTau7,166 chainHg19,164 chainMm9,164 chainMonDom5,164 chainNetBosTau7,169 chainNetHg19,167 chainNetMm9,167 chainNetMonDom5,167 netBosTau7,166 netHg19,164 netMm9,164 netMonDom5,164 involved tRNAs,193 is blastHg18KG,139 chainBosTau7,279 chainBosTau7,299 chainBosTau7,479 chainHg19,277 chainHg19,297 chainHg19,476 chainMm9,277 chainMm9,297 chainMm9,476 chainMonDom5,277 chainMonDom5,297 chainMonDom5,476 chainNetBosTau7,282 chainNetBosTau7,302 chainNetBosTau7,482 chainNetHg19,280 chainNetHg19,300 chainNetHg19,479 chainNetMm9,280 chainNetMm9,300 chainNetMm9,479 chainNetMonDom5,280 chainNetMonDom5,300 chainNetMonDom5,479 cpgIslandExt,56 cpgIslandExt,113 cpgIslandExt,121 cpgIslandExt,130 cpgIslandExt,160 cpgIslandExt,203 cpgIslandExt,321 cpgIslandExt,330 cpgIslandExt,335 cpgIslandExt,347 cpgIslandExt,368 cpgIslandExt,404 cpgIslandExt,494 cpgIslandExtUnmasked,59 cpgIslandExtUnmasked,116 cpgIslandExtUnmasked,124 cpgIslandExtUnmasked,133 cpgIslandExtUnmasked,163 cpgIslandExtUnmasked,206 cpgIslandExtUnmasked,324 cpgIslandExtUnmasked,333 cpgIslandExtUnmasked,338 cpgIslandExtUnmasked,350 cpgIslandExtUnmasked,371 cpgIslandExtUnmasked,407 cpgIslandExtUnmasked,497 cpgIslandSuper,56 cpgIslandSuper,113 cpgIslandSuper,121 cpgIslandSuper,130 cpgIslandSuper,160 cpgIslandSuper,203 cpgIslandSuper,321 cpgIslandSuper,330 cpgIslandSuper,335 cpgIslandSuper,347 cpgIslandSuper,368 cpgIslandSuper,404 cpgIslandSuper,494 est,292 est,308 est,344 est,361 est,450 est,462 est,471 est,491 est,620 est,663 gap,72 gap,79 gap,87 gc5Base,32 gold,33 gold,113 intronEst,102 intronEst,373 intronEst,389 intronEst,425 intronEst,442 intronEst,531 intronEst,543 intronEst,552 intronEst,572 intronEst,701 intronEst,744 microsat,88 mrna,238 mrna,254 mrna,290 mrna,307 nestedRepeats,59 nestedRepeats,123 nestedRepeats,198 nestedRepeats,219 nestedRepeats,337 netBosTau7,279 netBosTau7,299 netBosTau7,479 netHg19,277 netHg19,297 netHg19,476 netMm9,277 netMm9,297 netMm9,476 netMonDom5,277 netMonDom5,297 netMonDom5,476 numtS,211 numtS,229 numtS,302 numtS,343 numtS,360 numtS,397 numtS,448 numtS,465 numtSAssembled,213 numtSAssembled,231 numtSAssembled,304 numtSAssembled,345 numtSAssembled,362 numtSAssembled,399 numtSAssembled,450 numtSAssembled,467 numtSMitochondrion,215 numtSMitochondrion,233 numtSMitochondrion,306 numtSMitochondrion,347 numtSMitochondrion,364 numtSMitochondrion,401 numtSMitochondrion,452 numtSMitochondrion,469 numtSeq2012,214 numtSeq2012,232 numtSeq2012,305 numtSeq2012,346 numtSeq2012,363 numtSeq2012,400 numtSeq2012,451 numtSeq2012,468 rmsk,95 rmsk,360 simpleRepeat,28 tRNAs,25 tRNAs,125 xenoMrna,65 xenoMrna,119 xenoMrna,125 xenoMrna,313 xenoMrna,329 xenoMrna,365 xenoMrna,382 island cpgIslandExt,343 cpgIslandExtUnmasked,346 cpgIslandSuper,343 islands cpgIslandExt,2 cpgIslandExt,4 cpgIslandExt,5 cpgIslandExt,16 cpgIslandExt,27 cpgIslandExt,148 cpgIslandExt,177 cpgIslandExt,226 cpgIslandExt,320 cpgIslandExt,507 cpgIslandExt,609 cpgIslandExtUnmasked,4 cpgIslandExtUnmasked,8 cpgIslandExtUnmasked,19 cpgIslandExtUnmasked,30 cpgIslandExtUnmasked,151 cpgIslandExtUnmasked,180 cpgIslandExtUnmasked,229 cpgIslandExtUnmasked,323 cpgIslandExtUnmasked,510 cpgIslandExtUnmasked,612 cpgIslandSuper,2 cpgIslandSuper,4 cpgIslandSuper,5 cpgIslandSuper,16 cpgIslandSuper,27 cpgIslandSuper,148 cpgIslandSuper,177 cpgIslandSuper,226 cpgIslandSuper,320 cpgIslandSuper,507 cpgIslandSuper,609 isolated est,451 intronEst,532 isotype tRNAs,248 issue est,765 est,791 intronEst,849 intronEst,875 mrna,482 mrna,508 tRNAs,388 xenoMrna,557 xenoMrna,583 xenoRefGene,353 xenoRefGene,387 it chainBosTau7,91 chainBosTau7,278 chainBosTau7,533 chainBosTau7,545 chainHg19,89 chainHg19,276 chainHg19,530 chainHg19,542 chainMm9,89 chainMm9,276 chainMm9,530 chainMm9,542 chainMonDom5,89 chainMonDom5,276 chainMonDom5,530 chainMonDom5,542 chainNetBosTau7,94 chainNetBosTau7,281 chainNetBosTau7,536 chainNetBosTau7,548 chainNetHg19,92 chainNetHg19,279 chainNetHg19,533 chainNetHg19,545 chainNetMm9,92 chainNetMm9,279 chainNetMm9,533 chainNetMm9,545 chainNetMonDom5,92 chainNetMonDom5,279 chainNetMonDom5,533 chainNetMonDom5,545 est,90 est,104 est,513 gap,78 intronEst,171 intronEst,185 intronEst,594 netBosTau7,91 netBosTau7,278 netBosTau7,533 netBosTau7,545 netHg19,89 netHg19,276 netHg19,530 netHg19,542 netMm9,89 netMm9,276 netMm9,530 netMm9,542 netMonDom5,89 netMonDom5,276 netMonDom5,530 netMonDom5,542 nscanGene,59 italy numtS,97 numtS,497 numtSAssembled,99 numtSAssembled,499 numtSMitochondrion,101 numtSMitochondrion,501 numtSeq2012,100 numtSeq2012,500 item nestedRepeats,197 numtS,221 numtSAssembled,223 numtSMitochondrion,225 numtSeq2012,224 xenoRefGene,75 items chainBosTau7,497 chainHg19,494 chainMm9,494 chainMonDom5,494 chainNetBosTau7,500 chainNetHg19,497 chainNetMm9,497 chainNetMonDom5,497 est,62 est,135 est,145 est,339 intronEst,216 intronEst,226 intronEst,420 mrna,43 mrna,81 mrna,91 mrna,285 nestedRepeats,171 nestedRepeats,180 netBosTau7,497 netHg19,494 netMm9,494 netMonDom5,494 numtS,198 numtS,248 numtS,330 numtSAssembled,200 numtSAssembled,250 numtSAssembled,332 numtSMitochondrion,202 numtSMitochondrion,252 numtSMitochondrion,334 numtSeq2012,201 numtSeq2012,251 numtSeq2012,333 xenoMrna,48 xenoMrna,156 xenoMrna,166 xenoMrna,360 xenoRefGene,102 iterative nscanGene,254 its cpgIslandExt,509 cpgIslandExtUnmasked,512 cpgIslandSuper,509 nestedRepeats,204 j blastHg18KG,168 cpgIslandExt,613 cpgIslandExtUnmasked,616 cpgIslandSuper,613 ensGene,190 est,754 est,778 intronEst,838 intronEst,862 mrna,471 mrna,495 nestedRepeats,341 nscanGene,170 rmsk,364 tRNAs,429 xenoMrna,546 xenoMrna,570 xenoRefGene,332 jan chainBosTau7,1106 chainHg19,1103 chainMm9,1103 chainMonDom5,1103 chainNetBosTau7,1109 chainNetHg19,1106 chainNetMm9,1106 chainNetMonDom5,1106 ensGene,206 est,762 est,787 intronEst,846 intronEst,871 microsat,129 mrna,479 mrna,504 netBosTau7,1106 netHg19,1103 netMm9,1103 netMonDom5,1103 simpleRepeat,89 tRNAs,385 xenoMrna,554 xenoMrna,579 xenoRefGene,350 xenoRefGene,383 jim blastHg18KG,181 blastHg18KG,194 chainBosTau7,962 chainBosTau7,989 chainBosTau7,1007 chainHg19,959 chainHg19,986 chainHg19,1004 chainMm9,959 chainMm9,986 chainMm9,1004 chainMonDom5,959 chainMonDom5,986 chainMonDom5,1004 chainNetBosTau7,965 chainNetBosTau7,992 chainNetBosTau7,1010 chainNetHg19,962 chainNetHg19,989 chainNetHg19,1007 chainNetMm9,962 chainNetMm9,989 chainNetMm9,1007 chainNetMonDom5,962 chainNetMonDom5,989 chainNetMonDom5,1007 netBosTau7,962 netBosTau7,989 netBosTau7,1007 netHg19,959 netHg19,986 netHg19,1004 netMm9,959 netMm9,986 netMm9,1004 netMonDom5,959 netMonDom5,986 netMonDom5,1004 joined chainBosTau7,124 chainHg19,122 chainMm9,122 chainMonDom5,122 chainNetBosTau7,127 chainNetHg19,125 chainNetMm9,125 chainNetMonDom5,125 nestedRepeats,7 nestedRepeats,18 nestedRepeats,103 nestedRepeats,128 netBosTau7,124 netHg19,122 netMm9,122 netMonDom5,122 journal nestedRepeats,349 rmsk,372 jr nscanGene,187 nscanGene,190 jul cpgIslandExt,617 cpgIslandExtUnmasked,620 cpgIslandSuper,617 july chainMm9,4 chainMm9,66 chainMm9,300 chainNetMm9,5 chainNetMm9,69 chainNetMm9,303 chainNetMm9Viewchain,3 chainNetMm9Viewnet,3 netMm9,4 netMm9,66 netMm9,300 jun numtS,574 numtSAssembled,576 numtSMitochondrion,578 numtSeq2012,577 tRNAs,408 jurka nestedRepeats,62 nestedRepeats,340 rmsk,98 rmsk,363 k augustusGene,268 est,748 intronEst,832 mrna,465 xenoMrna,540 k1 cpgIslandExt,484 cpgIslandExtUnmasked,487 cpgIslandSuper,484 k2 cpgIslandExt,486 cpgIslandExtUnmasked,489 cpgIslandSuper,486 karsch-mizrachi est,749 est,773 intronEst,833 intronEst,857 mrna,466 mrna,490 xenoMrna,541 xenoMrna,565 kb numtS,279 numtSAssembled,281 numtSMitochondrion,283 numtSeq2012,282 kd xenoRefGene,318 xenoRefGene,360 kd-tree chainBosTau7,636 chainHg19,633 chainMm9,633 chainMonDom5,633 chainNetBosTau7,639 chainNetHg19,636 chainNetMm9,636 chainNetMonDom5,636 netBosTau7,636 netHg19,633 netMm9,633 netMonDom5,633 kd-trees chainBosTau7,654 chainHg19,651 chainMm9,651 chainMonDom5,651 chainNetBosTau7,657 chainNetHg19,654 chainNetMm9,654 chainNetMonDom5,654 netBosTau7,654 netHg19,651 netMm9,651 netMonDom5,651 keep cpgIslandExt,125 cpgIslandExtUnmasked,128 cpgIslandSuper,125 kent blastHg18KG,182 blastHg18KG,195 chainBosTau7,963 chainBosTau7,990 chainBosTau7,1008 chainBosTau7,1043 chainBosTau7,1085 chainHg19,960 chainHg19,987 chainHg19,1005 chainHg19,1040 chainHg19,1082 chainMm9,960 chainMm9,987 chainMm9,1005 chainMm9,1040 chainMm9,1082 chainMonDom5,960 chainMonDom5,987 chainMonDom5,1005 chainMonDom5,1040 chainMonDom5,1082 chainNetBosTau7,966 chainNetBosTau7,993 chainNetBosTau7,1011 chainNetBosTau7,1046 chainNetBosTau7,1088 chainNetHg19,963 chainNetHg19,990 chainNetHg19,1008 chainNetHg19,1043 chainNetHg19,1085 chainNetMm9,963 chainNetMm9,990 chainNetMm9,1008 chainNetMm9,1043 chainNetMm9,1085 chainNetMonDom5,963 chainNetMonDom5,990 chainNetMonDom5,1008 chainNetMonDom5,1043 chainNetMonDom5,1085 est,797 intronEst,881 mrna,514 netBosTau7,963 netBosTau7,990 netBosTau7,1008 netBosTau7,1043 netBosTau7,1085 netHg19,960 netHg19,987 netHg19,1005 netHg19,1040 netHg19,1082 netMm9,960 netMm9,987 netMm9,1005 netMm9,1040 netMm9,1082 netMonDom5,960 netMonDom5,987 netMonDom5,1005 netMonDom5,1040 netMonDom5,1082 xenoMrna,589 xenoRefGene,300 kept est,720 mrna,436 xenoMrna,511 xenoRefGene,276 km xenoRefGene,336 known blastHg18KG,26 chainBosTau7,913 chainHg19,910 chainMm9,910 chainMonDom5,910 chainNetBosTau7,916 chainNetHg19,913 chainNetMm9,913 chainNetMonDom5,913 gold,110 netBosTau7,913 netHg19,910 netMm9,910 netMonDom5,910 xenoRefGene,14 korf nscanGene,226 l cpgIslandExt,600 cpgIslandExtUnmasked,603 cpgIslandSuper,600 ensGene,186 lab augustusGene,252 nscanGene,27 nscanGene,145 tRNAs,338 label xenoRefGene,99 xenoRefGene,111 xenoRefGene,134 labeled nestedRepeats,132 xenoRefGene,104 labeling est,384 intronEst,465 labels nestedRepeats,161 xenoRefGene,76 laboratories nscanGene,154 landrum xenoRefGene,333 lang numtS,586 numtSAssembled,588 numtSMitochondrion,590 numtSeq2012,589 largely chainBosTau7,143 chainHg19,141 chainMm9,141 chainMonDom5,141 chainNetBosTau7,146 chainNetHg19,144 chainNetMm9,144 chainNetMonDom5,144 netBosTau7,143 netHg19,141 netMm9,141 netMonDom5,141 larger intronEst,149 largest chainBosTau7,392 chainHg19,389 chainMm9,389 chainMonDom5,389 chainNetBosTau7,395 chainNetHg19,392 chainNetMm9,392 chainNetMonDom5,392 netBosTau7,392 netHg19,389 netMm9,389 netMonDom5,389 lascaro numtS,546 numtSAssembled,548 numtSMitochondrion,550 numtSeq2012,549 last numtS,459 numtSAssembled,461 numtSMitochondrion,463 numtSeq2012,462 lastz chainBosTau7,589 chainBosTau7,762 chainBosTau7,911 chainHg19,586 chainHg19,759 chainHg19,908 chainMm9,586 chainMm9,759 chainMm9,908 chainMonDom5,586 chainMonDom5,759 chainMonDom5,908 chainNetBosTau7,592 chainNetBosTau7,765 chainNetBosTau7,914 chainNetHg19,589 chainNetHg19,762 chainNetHg19,911 chainNetMm9,589 chainNetMm9,762 chainNetMm9,911 chainNetMonDom5,589 chainNetMonDom5,762 chainNetMonDom5,911 netBosTau7,589 netBosTau7,762 netBosTau7,911 netHg19,586 netHg19,759 netHg19,908 netMm9,586 netMm9,759 netMm9,908 netMonDom5,586 netMonDom5,759 netMonDom5,908 lavtoaxt chainBosTau7,607 chainHg19,604 chainMm9,604 chainMonDom5,604 chainNetBosTau7,610 chainNetHg19,607 chainNetMm9,607 chainNetMonDom5,607 netBosTau7,607 netHg19,604 netMm9,604 netMonDom5,604 least blastHg18KG,126 est,711 intronEst,66 intronEst,81 intronEst,792 microsat,29 microsat,78 mrna,427 xenoMrna,502 xenoRefGene,267 length augustusGene,82 cpgIslandExt,268 cpgIslandExt,360 cpgIslandExt,395 cpgIslandExtUnmasked,271 cpgIslandExtUnmasked,363 cpgIslandExtUnmasked,398 cpgIslandSuper,268 cpgIslandSuper,360 cpgIslandSuper,395 est,35 est,659 intronEst,47 intronEst,85 intronEst,740 leonardo numtS,477 numtS,512 numtSAssembled,479 numtSAssembled,514 numtSMitochondrion,481 numtSMitochondrion,516 numtSeq2012,480 numtSeq2012,515 less numtS,276 numtSAssembled,278 numtSMitochondrion,280 numtSeq2012,279 xenoRefGene,231 level chainBosTau7,387 chainBosTau7,421 chainBosTau7,426 chainBosTau7,433 chainBosTau7,491 chainBosTau7,518 chainBosTau7,531 chainBosTau7,563 chainHg19,384 chainHg19,418 chainHg19,423 chainHg19,430 chainHg19,488 chainHg19,515 chainHg19,528 chainHg19,560 chainMm9,384 chainMm9,418 chainMm9,423 chainMm9,430 chainMm9,488 chainMm9,515 chainMm9,528 chainMm9,560 chainMonDom5,384 chainMonDom5,418 chainMonDom5,423 chainMonDom5,430 chainMonDom5,488 chainMonDom5,515 chainMonDom5,528 chainMonDom5,560 chainNetBosTau7,390 chainNetBosTau7,424 chainNetBosTau7,429 chainNetBosTau7,436 chainNetBosTau7,494 chainNetBosTau7,521 chainNetBosTau7,534 chainNetBosTau7,566 chainNetHg19,387 chainNetHg19,421 chainNetHg19,426 chainNetHg19,433 chainNetHg19,491 chainNetHg19,518 chainNetHg19,531 chainNetHg19,563 chainNetMm9,387 chainNetMm9,421 chainNetMm9,426 chainNetMm9,433 chainNetMm9,491 chainNetMm9,518 chainNetMm9,531 chainNetMm9,563 chainNetMonDom5,387 chainNetMonDom5,421 chainNetMonDom5,426 chainNetMonDom5,433 chainNetMonDom5,491 chainNetMonDom5,518 chainNetMonDom5,531 chainNetMonDom5,563 est,703 intronEst,95 intronEst,784 mrna,419 netBosTau7,387 netBosTau7,421 netBosTau7,426 netBosTau7,433 netBosTau7,491 netBosTau7,518 netBosTau7,531 netBosTau7,563 netHg19,384 netHg19,418 netHg19,423 netHg19,430 netHg19,488 netHg19,515 netHg19,528 netHg19,560 netMm9,384 netMm9,418 netMm9,423 netMm9,430 netMm9,488 netMm9,515 netMm9,528 netMm9,560 netMonDom5,384 netMonDom5,418 netMonDom5,423 netMonDom5,430 netMonDom5,488 netMonDom5,515 netMonDom5,528 netMonDom5,560 rmsk,205 xenoMrna,494 xenoRefGene,60 xenoRefGene,259 levels cpgIslandExt,158 cpgIslandExtUnmasked,161 cpgIslandSuper,158 li nscanGene,192 libraries est,557 gold,47 intronEst,638 nestedRepeats,258 nestedRepeats,317 rmsk,340 library nestedRepeats,47 rmsk,83 lifted ensGene,5 light cpgIslandExt,9 cpgIslandExtUnmasked,12 cpgIslandSuper,9 xenoRefGene,69 lighter rmsk,237 like chainBosTau7,48 chainBosTau7,56 chainHg19,47 chainHg19,55 chainMm9,47 chainMm9,55 chainMonDom5,47 chainMonDom5,55 chainNetBosTau7,51 chainNetBosTau7,59 chainNetHg19,50 chainNetHg19,58 chainNetMm9,50 chainNetMm9,58 chainNetMonDom5,50 chainNetMonDom5,58 ensGene,155 netBosTau7,48 netBosTau7,56 netHg19,47 netHg19,55 netMm9,47 netMm9,55 netMonDom5,47 netMonDom5,55 likely augustusGene,111 microsat,17 tRNAs,126 tRNAs,169 line chainBosTau7,469 chainHg19,466 chainMm9,466 chainMonDom5,466 chainNetBosTau7,472 chainNetHg19,469 chainNetMm9,469 chainNetMonDom5,469 gap,86 gold,112 nestedRepeats,151 netBosTau7,469 netHg19,466 netMm9,466 netMonDom5,466 rmsk,165 line-up chainBosTau7,536 chainHg19,533 chainMm9,533 chainMonDom5,533 chainNetBosTau7,539 chainNetHg19,536 chainNetMm9,536 chainNetMonDom5,536 netBosTau7,536 netHg19,533 netMm9,533 netMonDom5,533 line-ups chainBosTau7,521 chainHg19,518 chainMm9,518 chainMonDom5,518 chainNetBosTau7,524 chainNetHg19,521 chainNetMm9,521 chainNetMonDom5,521 netBosTau7,521 netHg19,518 netMm9,518 netMonDom5,518 lineage-specific chainBosTau7,937 chainHg19,934 chainMm9,934 chainMonDom5,934 chainNetBosTau7,940 chainNetHg19,937 chainNetMm9,937 chainNetMonDom5,937 netBosTau7,937 netHg19,934 netMm9,934 netMonDom5,934 linear chainBosTau7,696 chainHg19,693 chainMm9,693 chainMonDom5,693 chainNetBosTau7,699 chainNetHg19,696 chainNetMm9,696 chainNetMonDom5,696 netBosTau7,696 netHg19,693 netMm9,693 netMonDom5,693 lineargap chainBosTau7,702 chainHg19,699 chainMm9,699 chainMonDom5,699 chainNetBosTau7,705 chainNetHg19,702 chainNetMm9,702 chainNetMonDom5,702 netBosTau7,702 netHg19,699 netMm9,699 netMonDom5,699 lines chainBosTau7,131 chainBosTau7,138 chainBosTau7,160 chainBosTau7,449 chainHg19,129 chainHg19,136 chainHg19,158 chainHg19,446 chainMm9,129 chainMm9,136 chainMm9,158 chainMm9,446 chainMonDom5,129 chainMonDom5,136 chainMonDom5,158 chainMonDom5,446 chainNetBosTau7,134 chainNetBosTau7,141 chainNetBosTau7,163 chainNetBosTau7,452 chainNetHg19,132 chainNetHg19,139 chainNetHg19,161 chainNetHg19,449 chainNetMm9,132 chainNetMm9,139 chainNetMm9,161 chainNetMm9,449 chainNetMonDom5,132 chainNetMonDom5,139 chainNetMonDom5,161 chainNetMonDom5,449 nestedRepeats,131 netBosTau7,131 netBosTau7,138 netBosTau7,160 netBosTau7,449 netHg19,129 netHg19,136 netHg19,158 netHg19,446 netMm9,129 netMm9,136 netMm9,158 netMm9,446 netMonDom5,129 netMonDom5,136 netMonDom5,158 netMonDom5,446 link gc5Base,63 numtS,223 numtS,354 numtSAssembled,225 numtSAssembled,356 numtSMitochondrion,227 numtSMitochondrion,358 numtSeq2012,226 numtSeq2012,357 linux.x86_64 cpgIslandExt,579 cpgIslandExtUnmasked,582 cpgIslandSuper,579 lipman blastHg18KG,161 est,751 est,775 intronEst,835 intronEst,859 mrna,468 mrna,492 xenoMrna,543 xenoMrna,567 list est,209 intronEst,290 mrna,155 tRNAs,48 xenoMrna,230 listed ensGene,56 local blastHg18KG,164 chainBosTau7,111 chainBosTau7,182 chainHg19,109 chainHg19,180 chainMm9,109 chainMm9,180 chainMonDom5,109 chainMonDom5,180 chainNetBosTau7,114 chainNetBosTau7,185 chainNetHg19,112 chainNetHg19,183 chainNetMm9,112 chainNetMm9,183 chainNetMonDom5,112 chainNetMonDom5,183 ensGene,80 nestedRepeats,98 netBosTau7,111 netBosTau7,182 netHg19,109 netHg19,180 netMm9,109 netMm9,180 netMonDom5,109 netMonDom5,180 locate numtS,566 numtSAssembled,568 numtSMitochondrion,570 numtSeq2012,569 located simpleRepeat,21 location chainBosTau7,250 chainHg19,248 chainMm9,248 chainMonDom5,248 chainNetBosTau7,253 chainNetHg19,251 chainNetMm9,251 chainNetMonDom5,251 netBosTau7,250 netHg19,248 netMm9,248 netMonDom5,248 locations gap,3 logic est,287 intronEst,368 mrna,233 xenoMrna,308 long est,674 intronEst,755 numtS,299 numtSAssembled,301 numtSMitochondrion,303 numtSeq2012,302 rmsk,161 rmsk,166 longer chainBosTau7,83 chainHg19,81 chainMm9,81 chainMonDom5,81 chainNetBosTau7,86 chainNetHg19,84 chainNetMm9,84 chainNetMonDom5,84 netBosTau7,83 netHg19,81 netMm9,81 netMonDom5,81 tRNAs,192 longest chainBosTau7,514 chainHg19,511 chainMm9,511 chainMonDom5,511 chainNetBosTau7,517 chainNetHg19,514 chainNetMm9,514 chainNetMonDom5,514 netBosTau7,514 netHg19,511 netMm9,511 netMonDom5,511 look chainBosTau7,47 chainHg19,46 chainMm9,46 chainMonDom5,46 chainNetBosTau7,50 chainNetHg19,49 chainNetMm9,49 chainNetMonDom5,49 netBosTau7,47 netHg19,46 netMm9,46 netMonDom5,46 loose chainMonDom5,700 chainNetMonDom5,703 netMonDom5,700 loss tRNAs,231 louis nscanGene,33 nscanGene,127 low nestedRepeats,39 numtS,81 numtSAssembled,83 numtSMitochondrion,85 numtSeq2012,84 rmsk,29 rmsk,181 tRNAs,293 lowe tRNAs,337 tRNAs,368 tRNAs,440 lower chainBosTau7,490 chainHg19,487 chainMm9,487 chainMonDom5,487 chainNetBosTau7,493 chainNetHg19,490 chainNetMm9,490 chainNetMonDom5,490 netBosTau7,490 netHg19,487 netMm9,487 netMonDom5,487 lower-level chainBosTau7,853 chainBosTau7,859 chainHg19,850 chainHg19,856 chainMm9,850 chainMm9,856 chainMonDom5,850 chainMonDom5,856 chainNetBosTau7,856 chainNetBosTau7,862 chainNetHg19,853 chainNetHg19,859 chainNetMm9,853 chainNetMm9,859 chainNetMonDom5,853 chainNetMonDom5,859 netBosTau7,853 netBosTau7,859 netHg19,850 netHg19,856 netMm9,850 netMm9,856 netMonDom5,850 netMonDom5,856 ltr rmsk,170 m augustusGene,287 augustusGene,289 augustusGene,317 cpgIslandExt,605 cpgIslandExt,607 cpgIslandExtUnmasked,608 cpgIslandExtUnmasked,610 cpgIslandSuper,605 cpgIslandSuper,607 est,746 intronEst,830 mrna,463 numtS,92 numtS,523 numtS,557 numtS,587 numtS,591 numtSAssembled,94 numtSAssembled,525 numtSAssembled,559 numtSAssembled,589 numtSAssembled,593 numtSMitochondrion,96 numtSMitochondrion,527 numtSMitochondrion,561 numtSMitochondrion,591 numtSMitochondrion,595 numtSeq2012,95 numtSeq2012,526 numtSeq2012,560 numtSeq2012,590 numtSeq2012,594 xenoMrna,538 made rmsk,110 maglott xenoRefGene,363 maintained tRNAs,334 maiti nscanGene,193 make blastHg18KG,66 est,446 est,512 gold,64 intronEst,527 intronEst,593 rmsk,123 tRNAs,252 makedb rmsk,131 making tRNAs,356 mammalian nestedRepeats,368 nestedRepeats,382 rmsk,391 rmsk,405 xenoRefGene,343 manual numtS,444 numtS,498 numtSAssembled,446 numtSAssembled,500 numtSMitochondrion,448 numtSMitochondrion,502 numtSeq2012,447 numtSeq2012,501 many chainBosTau7,400 chainHg19,397 chainMm9,397 chainMonDom5,397 chainNetBosTau7,403 chainNetHg19,400 chainNetMm9,400 chainNetMonDom5,400 est,144 gap,28 intronEst,110 intronEst,225 mrna,90 netBosTau7,400 netHg19,397 netMm9,397 netMonDom5,397 xenoMrna,165 map chainBosTau7,328 chainHg19,325 chainMm9,325 chainMonDom5,325 chainNetBosTau7,331 chainNetHg19,328 chainNetMm9,328 chainNetMonDom5,328 netBosTau7,328 netHg19,325 netMm9,325 netMonDom5,325 mapped augustusGene,298 blastHg18KG,5 nestedRepeats,233 mapping ctgPos2,4 gap,4 gc5Base,8 gold,5 numtS,183 numtS,228 numtS,318 numtS,359 numtS,374 numtSAssembled,185 numtSAssembled,230 numtSAssembled,320 numtSAssembled,361 numtSAssembled,376 numtSMitochondrion,187 numtSMitochondrion,232 numtSMitochondrion,322 numtSMitochondrion,363 numtSMitochondrion,378 numtSeq2012,186 numtSeq2012,231 numtSeq2012,321 numtSeq2012,362 numtSeq2012,377 mappings numtS,402 numtSAssembled,404 numtSMitochondrion,406 numtSeq2012,405 mar augustusGene,309 nscanGene,174 numtS,536 numtSAssembled,538 numtSMitochondrion,540 numtSeq2012,539 tRNAs,461 marcella numtS,482 numtSAssembled,484 numtSMitochondrion,486 numtSeq2012,485 maria numtS,474 numtS,509 numtSAssembled,476 numtSAssembled,511 numtSMitochondrion,478 numtSMitochondrion,513 numtSeq2012,477 numtSeq2012,512 mario augustusGene,102 augustusGene,283 mark est,533 intronEst,614 marked gap,149 tRNAs,287 markers microsat,23 markov augustusGene,325 masked cpgIslandExt,192 cpgIslandExt,198 cpgIslandExt,328 cpgIslandExtUnmasked,195 cpgIslandExtUnmasked,201 cpgIslandExtUnmasked,331 cpgIslandSuper,192 cpgIslandSuper,198 cpgIslandSuper,328 rmsk,71 masking cpgIslandExt,304 cpgIslandExtUnmasked,307 cpgIslandSuper,304 maskoutfa cpgIslandExt,414 cpgIslandExtUnmasked,417 cpgIslandSuper,414 match chainBosTau7,255 chainBosTau7,515 chainBosTau7,553 chainHg19,253 chainHg19,512 chainHg19,550 chainMm9,253 chainMm9,512 chainMm9,550 chainMonDom5,253 chainMonDom5,512 chainMonDom5,550 chainNetBosTau7,258 chainNetBosTau7,518 chainNetBosTau7,556 chainNetHg19,256 chainNetHg19,515 chainNetHg19,553 chainNetMm9,256 chainNetMm9,515 chainNetMm9,553 chainNetMonDom5,256 chainNetMonDom5,515 chainNetMonDom5,553 est,81 est,297 est,312 est,353 est,371 intronEst,162 intronEst,378 intronEst,393 intronEst,434 intronEst,452 mrna,243 mrna,258 mrna,299 mrna,317 netBosTau7,255 netBosTau7,515 netBosTau7,553 netHg19,253 netHg19,512 netHg19,550 netMm9,253 netMm9,512 netMm9,550 netMonDom5,253 netMonDom5,512 netMonDom5,550 xenoMrna,83 xenoMrna,318 xenoMrna,333 xenoMrna,374 xenoMrna,392 matched blastHg18KG,124 matches est,69 mrna,50 xenoMrna,55 matching chainBosTau7,258 chainHg19,256 chainMm9,256 chainMonDom5,256 chainNetBosTau7,261 chainNetHg19,259 chainNetMm9,259 chainNetMonDom5,259 est,87 intronEst,168 netBosTau7,258 netHg19,256 netMm9,256 netMonDom5,256 xenoMrna,98 matrix chainBosTau7,666 chainBosTau7,698 chainHg19,663 chainHg19,695 chainMm9,663 chainMm9,695 chainMonDom5,663 chainMonDom5,695 chainNetBosTau7,669 chainNetBosTau7,701 chainNetHg19,666 chainNetHg19,698 chainNetMm9,666 chainNetMm9,698 chainNetMonDom5,666 chainNetMonDom5,698 netBosTau7,666 netBosTau7,698 netHg19,663 netHg19,695 netMm9,663 netMm9,695 netMonDom5,663 netMonDom5,695 tRNAs,494 mature est,503 intronEst,584 max nscanGene,151 maximal nscanGene,209 maximally chainBosTau7,658 chainHg19,655 chainMm9,655 chainMonDom5,655 chainNetBosTau7,661 chainNetHg19,658 chainNetMm9,658 chainNetMonDom5,658 cpgIslandExt,250 cpgIslandExtUnmasked,253 cpgIslandSuper,250 netBosTau7,658 netHg19,655 netMm9,655 netMonDom5,655 maximum blastHg18KG,91 est,657 intronEst,738 maxtracks augustusGene,139 may chainBosTau7,173 chainBosTau7,429 chainHg19,171 chainHg19,426 chainMm9,171 chainMm9,426 chainMonDom5,171 chainMonDom5,426 chainNetBosTau7,176 chainNetBosTau7,432 chainNetHg19,174 chainNetHg19,429 chainNetMm9,174 chainNetMm9,429 chainNetMonDom5,174 chainNetMonDom5,429 cpgIslandExt,36 cpgIslandExtUnmasked,39 cpgIslandSuper,36 est,140 est,259 est,269 est,377 est,428 est,508 est,510 est,522 est,524 est,544 est,668 gap,41 gc5Base,40 intronEst,221 intronEst,340 intronEst,350 intronEst,458 intronEst,509 intronEst,589 intronEst,591 intronEst,603 intronEst,605 intronEst,625 intronEst,749 mrna,86 mrna,205 mrna,215 mrna,323 mrna,367 nestedRepeats,268 nestedRepeats,290 netBosTau7,173 netBosTau7,429 netHg19,171 netHg19,426 netMm9,171 netMm9,426 netMonDom5,171 netMonDom5,426 nscanGene,266 numtS,68 numtSAssembled,70 numtSMitochondrion,72 numtSeq2012,71 rmsk,297 rmsk,307 simpleRepeat,43 tRNAs,210 tRNAs,212 tRNAs,325 xenoMrna,161 xenoMrna,280 xenoMrna,290 xenoMrna,398 xenoMrna,442 mcgarvey xenoRefGene,335 mdash est,482 est,486 gap,32 gap,40 intronEst,563 intronEst,567 mean tRNAs,117 medium chainBosTau7,703 chainHg19,700 chainMm9,700 chainNetBosTau7,706 chainNetHg19,703 chainNetMm9,703 netBosTau7,703 netHg19,700 netMm9,700 xenoRefGene,71 mellifera augustusGene,216 mementos nestedRepeats,377 rmsk,400 menu xenoRefGene,172 method ensGene,127 methods augustusGene,46 blastHg18KG,35 chainBosTau7,565 chainBosTau7,766 chainHg19,562 chainHg19,763 chainMm9,562 chainMm9,763 chainMonDom5,562 chainMonDom5,763 chainNetBosTau7,568 chainNetBosTau7,769 chainNetHg19,565 chainNetHg19,766 chainNetMm9,565 chainNetMm9,766 chainNetMonDom5,565 chainNetMonDom5,766 cpgIslandExt,224 cpgIslandExtUnmasked,227 cpgIslandSuper,224 ensGene,36 ensGene,42 est,444 intronEst,525 microsat,45 mrna,383 nestedRepeats,244 netBosTau7,565 netBosTau7,766 netHg19,562 netHg19,763 netMm9,562 netMm9,763 netMonDom5,562 netMonDom5,763 nscanGene,36 numtS,400 numtSAssembled,402 numtSMitochondrion,404 numtSeq2012,403 rmsk,286 simpleRepeat,55 xenoMrna,458 xenoRefGene,215 methylated cpgIslandExt,71 cpgIslandExt,100 cpgIslandExt,132 cpgIslandExtUnmasked,74 cpgIslandExtUnmasked,103 cpgIslandExtUnmasked,135 cpgIslandSuper,71 cpgIslandSuper,100 cpgIslandSuper,132 methylation cpgIslandExt,73 cpgIslandExtUnmasked,76 cpgIslandSuper,73 michael nscanGene,117 micro-satellites rmsk,180 microsatellite microsat,1 microsat,22 microsatellites microsat,2 might est,105 est,677 intronEst,186 intronEst,758 miklem cpgIslandExt,598 cpgIslandExtUnmasked,601 cpgIslandSuper,598 miller blastHg18KG,157 chainBosTau7,931 chainBosTau7,968 chainBosTau7,1029 chainBosTau7,1049 chainBosTau7,1097 chainHg19,928 chainHg19,965 chainHg19,1026 chainHg19,1046 chainHg19,1094 chainMm9,928 chainMm9,965 chainMm9,1026 chainMm9,1046 chainMm9,1094 chainMonDom5,928 chainMonDom5,965 chainMonDom5,1026 chainMonDom5,1046 chainMonDom5,1094 chainNetBosTau7,934 chainNetBosTau7,971 chainNetBosTau7,1032 chainNetBosTau7,1052 chainNetBosTau7,1100 chainNetHg19,931 chainNetHg19,968 chainNetHg19,1029 chainNetHg19,1049 chainNetHg19,1097 chainNetMm9,931 chainNetMm9,968 chainNetMm9,1029 chainNetMm9,1049 chainNetMm9,1097 chainNetMonDom5,931 chainNetMonDom5,968 chainNetMonDom5,1029 chainNetMonDom5,1049 chainNetMonDom5,1097 netBosTau7,931 netBosTau7,968 netBosTau7,1029 netBosTau7,1049 netBosTau7,1097 netHg19,928 netHg19,965 netHg19,1026 netHg19,1046 netHg19,1094 netMm9,928 netMm9,965 netMm9,1026 netMm9,1046 netMm9,1094 netMonDom5,928 netMonDom5,965 netMonDom5,1026 netMonDom5,1046 netMonDom5,1094 minexonintronprob augustusGene,135 minimum chainBosTau7,679 chainHg19,676 chainMm9,676 chainMonDom5,676 chainNetBosTau7,682 chainNetHg19,679 chainNetMm9,679 chainNetMonDom5,679 netBosTau7,679 netHg19,676 netMm9,676 netMonDom5,676 minmeanexonintronprob augustusGene,137 minmei chainBosTau7,923 chainHg19,920 chainMm9,920 chainMonDom5,920 chainNetBosTau7,926 chainNetHg19,923 chainNetMm9,923 chainNetMonDom5,923 netBosTau7,923 netHg19,920 netMm9,920 netMonDom5,920 mismatch rmsk,218 mitochondria numtS,46 numtSAssembled,48 numtSMitochondrion,50 numtSeq2012,49 mitochondrial numtS,13 numtS,16 numtS,146 numtS,159 numtS,173 numtS,178 numtS,227 numtS,282 numtS,324 numtS,380 numtS,422 numtS,596 numtSAssembled,15 numtSAssembled,18 numtSAssembled,148 numtSAssembled,161 numtSAssembled,175 numtSAssembled,180 numtSAssembled,229 numtSAssembled,284 numtSAssembled,326 numtSAssembled,382 numtSAssembled,424 numtSAssembled,598 numtSMitochondrion,17 numtSMitochondrion,20 numtSMitochondrion,150 numtSMitochondrion,163 numtSMitochondrion,177 numtSMitochondrion,182 numtSMitochondrion,231 numtSMitochondrion,286 numtSMitochondrion,328 numtSMitochondrion,384 numtSMitochondrion,426 numtSMitochondrion,600 numtSeq2012,5 numtSeq2012,16 numtSeq2012,19 numtSeq2012,149 numtSeq2012,162 numtSeq2012,176 numtSeq2012,181 numtSeq2012,230 numtSeq2012,285 numtSeq2012,327 numtSeq2012,383 numtSeq2012,425 numtSeq2012,599 mitochondrion bamAllNumtSSorted,6 numtS,309 numtS,314 numtS,365 numtSAssembled,311 numtSAssembled,316 numtSAssembled,367 numtSMitochondrion,7 numtSMitochondrion,313 numtSMitochondrion,318 numtSMitochondrion,369 numtSeq2012,312 numtSeq2012,317 numtSeq2012,368 mj nscanGene,251 xenoRefGene,334 mm9 chainMm9,7 chainMm9,69 chainMm9,303 chainNetMm9,8 chainNetMm9,72 chainNetMm9,306 chainNetMm9Viewchain,6 chainNetMm9Viewnet,6 netMm9,7 netMm9,69 netMm9,303 mo nscanGene,34 mode chainBosTau7,384 chainHg19,381 chainMm9,381 chainMonDom5,381 chainNetBosTau7,387 chainNetHg19,384 chainNetMm9,384 chainNetMonDom5,384 est,60 est,125 gold,57 intronEst,144 intronEst,206 mrna,41 mrna,71 nestedRepeats,119 nestedRepeats,160 nestedRepeats,169 netBosTau7,384 netHg19,381 netMm9,381 netMonDom5,381 rmsk,142 xenoMrna,46 xenoMrna,146 model augustusGene,121 augustusGene,326 model-based tRNAs,61 modeling nscanGene,40 models augustusGene,49 augustusGene,65 augustusGene,97 augustusGene,145 augustusGene,178 nscanGene,79 nscanGene,84 tRNAs,403 modes chainBosTau7,240 chainHg19,238 chainMm9,238 chainMonDom5,238 chainNetBosTau7,243 chainNetHg19,241 chainNetMm9,241 chainNetMonDom5,241 netBosTau7,240 netHg19,238 netMm9,238 netMonDom5,238 modification cpgIslandExt,591 cpgIslandExtUnmasked,594 cpgIslandSuper,591 modified rmsk,57 mol blastHg18KG,169 cpgIslandExt,614 cpgIslandExtUnmasked,617 cpgIslandSuper,614 tRNAs,430 molecule tRNAs,147 mondom5 chainMonDom5,7 chainMonDom5,69 chainMonDom5,303 chainNetMonDom5,8 chainNetMonDom5,72 chainNetMonDom5,306 chainNetMonDom5Viewchain,6 chainNetMonDom5Viewnet,6 netMonDom5,7 netMonDom5,69 netMonDom5,303 more augustusGene,35 blastHg18KG,105 blastHg18KG,148 chainBosTau7,162 chainBosTau7,222 chainHg19,160 chainHg19,220 chainMm9,160 chainMm9,220 chainMonDom5,160 chainMonDom5,220 chainNetBosTau7,165 chainNetBosTau7,225 chainNetHg19,163 chainNetHg19,223 chainNetMm9,163 chainNetMm9,223 chainNetMonDom5,163 chainNetMonDom5,223 cpgIslandExt,541 cpgIslandExtUnmasked,544 cpgIslandSuper,541 ensGene,25 ensGene,165 est,65 est,172 est,279 est,409 est,433 intronEst,253 intronEst,360 intronEst,490 intronEst,514 microsat,96 mrna,46 mrna,118 mrna,225 mrna,346 mrna,372 nestedRepeats,211 nestedRepeats,300 netBosTau7,162 netBosTau7,222 netHg19,160 netHg19,220 netMm9,160 netMm9,220 netMonDom5,160 netMonDom5,220 rmsk,323 simpleRepeat,57 xenoMrna,51 xenoMrna,193 xenoMrna,300 xenoMrna,421 xenoMrna,447 xenoRefGene,174 most augustusGene,93 augustusGene,110 est,481 intronEst,562 nestedRepeats,249 numtS,24 numtSAssembled,26 numtSMitochondrion,28 numtSeq2012,27 mostly tRNAs,298 motif tRNAs,38 mount nscanGene,184 mouse chainBosTau7,1062 chainHg19,1059 chainMm9,1 chainMm9,3 chainMm9,65 chainMm9,96 chainMm9,148 chainMm9,266 chainMm9,291 chainMm9,572 chainMm9,620 chainMm9,1059 chainMonDom5,1059 chainNetBosTau7,1065 chainNetHg19,1062 chainNetMm9,1 chainNetMm9,4 chainNetMm9,68 chainNetMm9,99 chainNetMm9,151 chainNetMm9,269 chainNetMm9,294 chainNetMm9,575 chainNetMm9,623 chainNetMm9,1062 chainNetMm9Viewchain,2 chainNetMm9Viewnet,2 chainNetMonDom5,1062 netBosTau7,1062 netHg19,1059 netMm9,1 netMm9,3 netMm9,65 netMm9,96 netMm9,148 netMm9,266 netMm9,291 netMm9,572 netMm9,620 netMm9,1059 netMonDom5,1059 numtS,526 numtSAssembled,528 numtSMitochondrion,530 numtSeq2012,529 mr nscanGene,162 nscanGene,233 nscanGene,253 mrna est,7 est,504 est,520 est,603 intronEst,9 intronEst,585 intronEst,601 intronEst,684 mrna,7 mrna,12 mrna,126 mrna,399 mrna,439 mrna,446 xenoMrna,7 xenoMrna,21 xenoMrna,201 xenoMrna,473 xenoMrna,514 xenoMrna,521 mrnas mrna,2 mrna,4 mrna,18 mrna,136 mrna,241 mrna,256 mrna,297 mrna,315 mrna,340 mrna,386 xenoMrna,2 xenoMrna,4 xenoMrna,211 xenoMrna,316 xenoMrna,331 xenoMrna,372 xenoMrna,390 xenoMrna,415 xenoMrna,460 mtdna numtS,43 numtS,75 numtSAssembled,45 numtSAssembled,77 numtSMitochondrion,47 numtSMitochondrion,79 numtSeq2012,46 numtSeq2012,78 much chainBosTau7,880 chainBosTau7,897 chainHg19,877 chainHg19,894 chainMm9,877 chainMm9,894 chainMonDom5,877 chainMonDom5,894 chainNetBosTau7,883 chainNetBosTau7,900 chainNetHg19,880 chainNetHg19,897 chainNetMm9,880 chainNetMm9,897 chainNetMonDom5,880 chainNetMonDom5,897 nestedRepeats,210 netBosTau7,880 netBosTau7,897 netHg19,877 netHg19,894 netMm9,877 netMm9,894 netMonDom5,877 netMonDom5,894 multiple chainBosTau7,194 chainHg19,192 chainMm9,192 chainMonDom5,192 chainNetBosTau7,197 chainNetHg19,195 chainNetMm9,195 chainNetMonDom5,195 est,257 est,686 intronEst,338 intronEst,767 mrna,203 mrna,402 netBosTau7,194 netHg19,192 netMm9,192 netMonDom5,192 nscanGene,164 xenoMrna,278 xenoMrna,476 xenoRefGene,242 multiple-genome nscanGene,51 multistep tRNAs,492 must intronEst,61 intronEst,78 numtS,267 numtS,274 numtSAssembled,269 numtSAssembled,276 numtSMitochondrion,271 numtSMitochondrion,278 numtSeq2012,270 numtSeq2012,277 mutagenic numtS,35 numtSAssembled,37 numtSMitochondrion,39 numtSeq2012,38 mutation chainBosTau7,183 chainHg19,181 chainMm9,181 chainMonDom5,181 chainNetBosTau7,186 chainNetHg19,184 chainNetMm9,184 chainNetMonDom5,184 netBosTau7,183 netHg19,181 netMm9,181 netMonDom5,181 myers blastHg18KG,159 mysql cpgIslandExt,538 cpgIslandExtUnmasked,541 cpgIslandSuper,538 ensGene,122 ensGene,132 n cpgIslandExt,386 cpgIslandExt,394 cpgIslandExt,456 cpgIslandExtUnmasked,389 cpgIslandExtUnmasked,397 cpgIslandExtUnmasked,459 cpgIslandSuper,386 cpgIslandSuper,394 cpgIslandSuper,456 gap,150 n-scan nscanGene,1 nscanGene,2 nscanGene,17 nscanGene,37 nscanGene,83 nscanGene,100 nscanGene,138 name chainBosTau7,366 chainHg19,363 chainMm9,363 chainMonDom5,363 chainNetBosTau7,369 chainNetHg19,366 chainNetMm9,366 chainNetMonDom5,366 est,198 intronEst,279 mrna,144 nestedRepeats,136 netBosTau7,366 netHg19,363 netMm9,363 netMonDom5,363 xenoMrna,219 xenoRefGene,107 xenoRefGene,117 xenoRefGene,122 names chainBosTau7,244 chainHg19,242 chainMm9,242 chainMonDom5,242 chainNetBosTau7,247 chainNetHg19,245 chainNetMm9,245 chainNetMonDom5,245 ctgPos2,12 netBosTau7,244 netHg19,242 netMm9,242 netMonDom5,242 xenoRefGene,129 native augustusGene,295 natl chainBosTau7,1067 chainHg19,1064 chainMm9,1064 chainMonDom5,1064 chainNetBosTau7,1070 chainNetHg19,1067 chainNetMm9,1067 chainNetMonDom5,1067 netBosTau7,1067 netHg19,1064 netMm9,1064 netMonDom5,1064 natural chainBosTau7,818 chainHg19,815 chainMm9,815 chainMonDom5,815 chainNetBosTau7,821 chainNetHg19,818 chainNetMm9,818 chainNetMonDom5,818 netBosTau7,818 netHg19,815 netMm9,815 netMonDom5,815 naview tRNAs,348 nbsp chainBosTau7,669 chainHg19,666 chainMm9,666 chainMonDom5,666 chainNetBosTau7,672 chainNetHg19,669 chainNetMm9,669 chainNetMonDom5,669 netBosTau7,669 netHg19,666 netMm9,666 netMonDom5,666 nc_012095 numtS,162 numtS,426 numtSAssembled,164 numtSAssembled,428 numtSMitochondrion,166 numtSMitochondrion,430 numtSeq2012,165 numtSeq2012,429 ncbi blastHg18KG,143 gap,20 gold,21 xenoRefGene,27 xenoRefGene,296 xenoRefGene,365 ncbi37 chainMm9,6 chainMm9,68 chainMm9,302 chainNetMm9,7 chainNetMm9,71 chainNetMm9,305 chainNetMm9Viewchain,5 chainNetMm9Viewnet,5 netMm9,6 netMm9,68 netMm9,302 near cpgIslandExt,31 cpgIslandExtUnmasked,34 cpgIslandSuper,31 necessary chainBosTau7,802 chainHg19,799 chainMm9,799 chainMonDom5,799 chainNetBosTau7,805 chainNetHg19,802 chainNetMm9,802 chainNetMonDom5,802 netBosTau7,802 netHg19,799 netMm9,799 netMonDom5,799 nematodes augustusGene,211 net chainBosTau7,35 chainBosTau7,260 chainBosTau7,263 chainBosTau7,379 chainBosTau7,756 chainHg19,34 chainHg19,258 chainHg19,261 chainHg19,376 chainHg19,753 chainMm9,34 chainMm9,258 chainMm9,261 chainMm9,376 chainMm9,753 chainMonDom5,34 chainMonDom5,258 chainMonDom5,261 chainMonDom5,376 chainMonDom5,753 chainNetBosTau7,3 chainNetBosTau7,12 chainNetBosTau7,38 chainNetBosTau7,263 chainNetBosTau7,266 chainNetBosTau7,382 chainNetBosTau7,759 chainNetBosTau7Viewchain,10 chainNetBosTau7Viewnet,1 chainNetBosTau7Viewnet,10 chainNetHg19,3 chainNetHg19,11 chainNetHg19,37 chainNetHg19,261 chainNetHg19,264 chainNetHg19,379 chainNetHg19,756 chainNetHg19Viewchain,9 chainNetHg19Viewnet,1 chainNetHg19Viewnet,9 chainNetMm9,3 chainNetMm9,11 chainNetMm9,37 chainNetMm9,261 chainNetMm9,264 chainNetMm9,379 chainNetMm9,756 chainNetMm9Viewchain,9 chainNetMm9Viewnet,1 chainNetMm9Viewnet,9 chainNetMonDom5,3 chainNetMonDom5,11 chainNetMonDom5,37 chainNetMonDom5,261 chainNetMonDom5,264 chainNetMonDom5,379 chainNetMonDom5,756 chainNetMonDom5Viewchain,9 chainNetMonDom5Viewnet,1 chainNetMonDom5Viewnet,9 netBosTau7,2 netBosTau7,10 netBosTau7,35 netBosTau7,260 netBosTau7,263 netBosTau7,379 netBosTau7,756 netHg19,2 netHg19,9 netHg19,34 netHg19,258 netHg19,261 netHg19,376 netHg19,753 netMm9,2 netMm9,9 netMm9,34 netMm9,258 netMm9,261 netMm9,376 netMm9,753 netMonDom5,2 netMonDom5,9 netMonDom5,34 netMonDom5,258 netMonDom5,261 netMonDom5,376 netMonDom5,753 netclass chainBosTau7,872 chainBosTau7,995 chainHg19,869 chainHg19,992 chainMm9,869 chainMm9,992 chainMonDom5,869 chainMonDom5,992 chainNetBosTau7,875 chainNetBosTau7,998 chainNetHg19,872 chainNetHg19,995 chainNetMm9,872 chainNetMm9,995 chainNetMonDom5,872 chainNetMonDom5,995 netBosTau7,872 netBosTau7,995 netHg19,869 netHg19,992 netMm9,869 netMm9,992 netMonDom5,869 netMonDom5,992 nets chainBosTau7,982 chainHg19,979 chainMm9,979 chainMonDom5,979 chainNetBosTau7,985 chainNetHg19,982 chainNetMm9,982 chainNetMonDom5,982 netBosTau7,982 netHg19,979 netMm9,979 netMonDom5,979 netsyntenic chainBosTau7,840 chainBosTau7,993 chainHg19,837 chainHg19,990 chainMm9,837 chainMm9,990 chainMonDom5,837 chainMonDom5,990 chainNetBosTau7,843 chainNetBosTau7,996 chainNetHg19,840 chainNetHg19,993 chainNetMm9,840 chainNetMm9,993 chainNetMonDom5,840 chainNetMonDom5,993 netBosTau7,840 netBosTau7,993 netHg19,837 netHg19,990 netMm9,837 netMm9,990 netMonDom5,837 netMonDom5,990 new augustusGene,329 tRNAs,482 newer est,555 intronEst,636 nestedRepeats,270 rmsk,106 newly cpgIslandExt,77 cpgIslandExtUnmasked,80 cpgIslandSuper,77 next blastHg18KG,60 chainBosTau7,345 chainBosTau7,374 chainHg19,342 chainHg19,371 chainMm9,342 chainMm9,371 chainMonDom5,342 chainMonDom5,371 chainNetBosTau7,348 chainNetBosTau7,377 chainNetHg19,345 chainNetHg19,374 chainNetMm9,345 chainNetMm9,374 chainNetMonDom5,345 chainNetMonDom5,374 netBosTau7,345 netBosTau7,374 netHg19,342 netHg19,371 netMm9,342 netMm9,371 netMonDom5,342 netMonDom5,371 nig augustusGene,270 no blastHg18KG,95 est,92 intronEst,173 microsat,73 numtS,395 numtSAssembled,397 numtSMitochondrion,399 numtSeq2012,398 tRNAs,191 nomask cpgIslandExt,498 cpgIslandExtUnmasked,501 cpgIslandSuper,498 non-alignable chainBosTau7,50 chainHg19,49 chainMm9,49 chainMonDom5,49 chainNetBosTau7,53 chainNetHg19,52 chainNetMm9,52 chainNetMonDom5,52 netBosTau7,50 netHg19,49 netMm9,49 netMonDom5,49 non-coding augustusGene,75 xenoRefGene,191 non-mrna est,624 intronEst,705 non-pig xenoMrna,3 xenoRefGene,3 non-protein-coding xenoRefGene,17 xenoRefGene,199 non-redundant xenoRefGene,371 nonsyn chainBosTau7,551 chainHg19,548 chainMm9,548 chainMonDom5,548 chainNetBosTau7,554 chainNetHg19,551 chainNetMm9,551 chainNetMonDom5,551 netBosTau7,551 netHg19,548 netMm9,548 netMonDom5,548 nor tRNAs,265 xenoMrna,124 normally cpgIslandExt,42 cpgIslandExtUnmasked,45 cpgIslandSuper,42 not chainBosTau7,807 chainHg19,804 chainMm9,804 chainMonDom5,804 chainNetBosTau7,810 chainNetHg19,807 chainNetMm9,807 chainNetMonDom5,807 cpgIslandExt,131 cpgIslandExt,186 cpgIslandExtUnmasked,134 cpgIslandExtUnmasked,189 cpgIslandSuper,131 cpgIslandSuper,186 est,349 est,484 est,511 est,525 gap,116 gap,156 intronEst,430 intronEst,565 intronEst,592 intronEst,606 mrna,295 netBosTau7,807 netHg19,804 netMm9,804 netMonDom5,804 rmsk,113 rmsk,313 tRNAs,136 tRNAs,153 tRNAs,213 tRNAs,263 tRNAs,306 xenoMrna,120 xenoMrna,370 note est,654 intronEst,735 nestedRepeats,264 tRNAs,283 nov gap,16 gold,17 novo augustusGene,304 nscanGene,56 ns chainBosTau7,887 chainHg19,884 chainMm9,884 chainMonDom5,884 chainNetBosTau7,890 chainNetHg19,887 chainNetMm9,887 chainNetMonDom5,887 gap,127 gap,142 netBosTau7,887 netHg19,884 netMm9,884 netMonDom5,884 nuclear numtS,12 numtS,20 numtS,144 numtS,172 numtS,192 numtS,289 numtS,358 numtS,595 numtSAssembled,14 numtSAssembled,22 numtSAssembled,146 numtSAssembled,174 numtSAssembled,194 numtSAssembled,291 numtSAssembled,360 numtSAssembled,597 numtSMitochondrion,16 numtSMitochondrion,24 numtSMitochondrion,148 numtSMitochondrion,176 numtSMitochondrion,196 numtSMitochondrion,293 numtSMitochondrion,362 numtSMitochondrion,599 numtSeq2012,15 numtSeq2012,23 numtSeq2012,147 numtSeq2012,175 numtSeq2012,195 numtSeq2012,292 numtSeq2012,361 numtSeq2012,598 rmsk,155 rmsk,163 nucleic ensGene,202 est,758 est,783 intronEst,842 intronEst,867 microsat,125 mrna,475 mrna,500 nscanGene,213 simpleRepeat,85 tRNAs,381 tRNAs,404 tRNAs,457 tRNAs,500 xenoMrna,550 xenoMrna,575 xenoRefGene,346 xenoRefGene,379 nucleotide cpgIslandExt,352 cpgIslandExtUnmasked,355 cpgIslandSuper,352 nucleus numtS,49 numtSAssembled,51 numtSMitochondrion,53 numtSeq2012,52 number augustusGene,153 cpgIslandExt,279 cpgIslandExt,286 cpgIslandExt,292 cpgIslandExt,337 cpgIslandExt,383 cpgIslandExt,387 cpgIslandExt,390 cpgIslandExtUnmasked,282 cpgIslandExtUnmasked,289 cpgIslandExtUnmasked,295 cpgIslandExtUnmasked,340 cpgIslandExtUnmasked,386 cpgIslandExtUnmasked,390 cpgIslandExtUnmasked,393 cpgIslandSuper,279 cpgIslandSuper,286 cpgIslandSuper,292 cpgIslandSuper,337 cpgIslandSuper,383 cpgIslandSuper,387 cpgIslandSuper,390 intronEst,150 nscanGene,71 rmsk,233 numts bamAllNumtSSorted,1 bamAllNumtSSorted,4 numtS,1 numtS,3 numtS,11 numtS,58 numtS,67 numtS,104 numtS,109 numtS,128 numtS,136 numtS,141 numtS,171 numtS,177 numtS,238 numtS,240 numtS,244 numtS,256 numtS,307 numtS,312 numtS,363 numtS,370 numtS,401 numtS,527 numtS,570 numtSAssembled,1 numtSAssembled,4 numtSAssembled,13 numtSAssembled,60 numtSAssembled,69 numtSAssembled,106 numtSAssembled,111 numtSAssembled,130 numtSAssembled,138 numtSAssembled,143 numtSAssembled,173 numtSAssembled,179 numtSAssembled,240 numtSAssembled,242 numtSAssembled,246 numtSAssembled,258 numtSAssembled,309 numtSAssembled,314 numtSAssembled,365 numtSAssembled,372 numtSAssembled,403 numtSAssembled,529 numtSAssembled,572 numtSMitochondrion,1 numtSMitochondrion,5 numtSMitochondrion,15 numtSMitochondrion,62 numtSMitochondrion,71 numtSMitochondrion,108 numtSMitochondrion,113 numtSMitochondrion,132 numtSMitochondrion,140 numtSMitochondrion,145 numtSMitochondrion,175 numtSMitochondrion,181 numtSMitochondrion,242 numtSMitochondrion,244 numtSMitochondrion,248 numtSMitochondrion,260 numtSMitochondrion,311 numtSMitochondrion,316 numtSMitochondrion,367 numtSMitochondrion,374 numtSMitochondrion,405 numtSMitochondrion,531 numtSMitochondrion,574 numtSeq2012,1 numtSeq2012,4 numtSeq2012,14 numtSeq2012,61 numtSeq2012,70 numtSeq2012,107 numtSeq2012,112 numtSeq2012,131 numtSeq2012,139 numtSeq2012,144 numtSeq2012,174 numtSeq2012,180 numtSeq2012,241 numtSeq2012,243 numtSeq2012,247 numtSeq2012,259 numtSeq2012,310 numtSeq2012,315 numtSeq2012,366 numtSeq2012,373 numtSeq2012,404 numtSeq2012,530 numtSeq2012,573 o ctgPos2,47 xenoRefGene,328 obs cpgIslandExt,380 cpgIslandExtUnmasked,383 cpgIslandSuper,380 observed cpgIslandExt,278 cpgIslandExt,364 cpgIslandExtUnmasked,281 cpgIslandExtUnmasked,367 cpgIslandSuper,278 cpgIslandSuper,364 obtain tRNAs,45 tRNAs,67 obtained augustusGene,126 cpgIslandExt,562 cpgIslandExt,573 cpgIslandExtUnmasked,565 cpgIslandExtUnmasked,576 cpgIslandSuper,562 cpgIslandSuper,573 numtS,155 numtS,249 numtS,404 numtSAssembled,157 numtSAssembled,251 numtSAssembled,406 numtSMitochondrion,159 numtSMitochondrion,253 numtSMitochondrion,408 numtSeq2012,158 numtSeq2012,252 numtSeq2012,407 occur simpleRepeat,36 oct augustusGene,334 blastHg18KG,172 chainBosTau7,4 chainBosTau7,67 chainBosTau7,302 chainMonDom5,4 chainMonDom5,66 chainMonDom5,300 chainNetBosTau7,5 chainNetBosTau7,70 chainNetBosTau7,305 chainNetBosTau7Viewchain,3 chainNetBosTau7Viewnet,3 chainNetMonDom5,5 chainNetMonDom5,69 chainNetMonDom5,303 chainNetMonDom5Viewchain,3 chainNetMonDom5Viewnet,3 netBosTau7,4 netBosTau7,67 netBosTau7,302 netMonDom5,4 netMonDom5,66 netMonDom5,300 nscanGene,217 numtS,610 numtSAssembled,612 numtSMitochondrion,614 numtSeq2012,613 of augustusGene,72 augustusGene,84 augustusGene,92 augustusGene,94 augustusGene,154 augustusGene,195 augustusGene,236 blastHg18KG,19 blastHg18KG,108 blastHg18KG,120 blastHg18KG,128 blastHg18KG,141 chainBosTau7,18 chainBosTau7,65 chainBosTau7,181 chainBosTau7,201 chainBosTau7,253 chainBosTau7,274 chainBosTau7,357 chainBosTau7,367 chainBosTau7,485 chainBosTau7,505 chainBosTau7,638 chainBosTau7,643 chainBosTau7,661 chainBosTau7,681 chainBosTau7,881 chainBosTau7,956 chainBosTau7,978 chainBosTau7,1002 chainBosTau7,1016 chainHg19,17 chainHg19,64 chainHg19,179 chainHg19,199 chainHg19,251 chainHg19,272 chainHg19,354 chainHg19,364 chainHg19,482 chainHg19,502 chainHg19,635 chainHg19,640 chainHg19,658 chainHg19,678 chainHg19,878 chainHg19,953 chainHg19,975 chainHg19,999 chainHg19,1013 chainMm9,17 chainMm9,64 chainMm9,179 chainMm9,199 chainMm9,251 chainMm9,272 chainMm9,354 chainMm9,364 chainMm9,482 chainMm9,502 chainMm9,635 chainMm9,640 chainMm9,658 chainMm9,678 chainMm9,878 chainMm9,953 chainMm9,975 chainMm9,999 chainMm9,1013 chainMonDom5,17 chainMonDom5,64 chainMonDom5,179 chainMonDom5,199 chainMonDom5,251 chainMonDom5,272 chainMonDom5,354 chainMonDom5,364 chainMonDom5,482 chainMonDom5,502 chainMonDom5,635 chainMonDom5,640 chainMonDom5,658 chainMonDom5,678 chainMonDom5,878 chainMonDom5,953 chainMonDom5,975 chainMonDom5,999 chainMonDom5,1013 chainNetBosTau7,21 chainNetBosTau7,68 chainNetBosTau7,184 chainNetBosTau7,204 chainNetBosTau7,256 chainNetBosTau7,277 chainNetBosTau7,360 chainNetBosTau7,370 chainNetBosTau7,488 chainNetBosTau7,508 chainNetBosTau7,641 chainNetBosTau7,646 chainNetBosTau7,664 chainNetBosTau7,684 chainNetBosTau7,884 chainNetBosTau7,959 chainNetBosTau7,981 chainNetBosTau7,1005 chainNetBosTau7,1019 chainNetHg19,20 chainNetHg19,67 chainNetHg19,182 chainNetHg19,202 chainNetHg19,254 chainNetHg19,275 chainNetHg19,357 chainNetHg19,367 chainNetHg19,485 chainNetHg19,505 chainNetHg19,638 chainNetHg19,643 chainNetHg19,661 chainNetHg19,681 chainNetHg19,881 chainNetHg19,956 chainNetHg19,978 chainNetHg19,1002 chainNetHg19,1016 chainNetMm9,20 chainNetMm9,67 chainNetMm9,182 chainNetMm9,202 chainNetMm9,254 chainNetMm9,275 chainNetMm9,357 chainNetMm9,367 chainNetMm9,485 chainNetMm9,505 chainNetMm9,638 chainNetMm9,643 chainNetMm9,661 chainNetMm9,681 chainNetMm9,881 chainNetMm9,956 chainNetMm9,978 chainNetMm9,1002 chainNetMm9,1016 chainNetMonDom5,20 chainNetMonDom5,67 chainNetMonDom5,182 chainNetMonDom5,202 chainNetMonDom5,254 chainNetMonDom5,275 chainNetMonDom5,357 chainNetMonDom5,367 chainNetMonDom5,485 chainNetMonDom5,505 chainNetMonDom5,638 chainNetMonDom5,643 chainNetMonDom5,661 chainNetMonDom5,681 chainNetMonDom5,881 chainNetMonDom5,956 chainNetMonDom5,978 chainNetMonDom5,1002 chainNetMonDom5,1016 cpgIslandExt,91 cpgIslandExt,108 cpgIslandExt,144 cpgIslandExt,171 cpgIslandExt,200 cpgIslandExt,221 cpgIslandExt,264 cpgIslandExt,277 cpgIslandExt,280 cpgIslandExt,290 cpgIslandExt,293 cpgIslandExt,312 cpgIslandExt,338 cpgIslandExt,350 cpgIslandExt,363 cpgIslandExt,384 cpgIslandExt,388 cpgIslandExt,391 cpgIslandExt,396 cpgIslandExt,400 cpgIslandExt,592 cpgIslandExtUnmasked,94 cpgIslandExtUnmasked,111 cpgIslandExtUnmasked,147 cpgIslandExtUnmasked,174 cpgIslandExtUnmasked,203 cpgIslandExtUnmasked,224 cpgIslandExtUnmasked,267 cpgIslandExtUnmasked,280 cpgIslandExtUnmasked,283 cpgIslandExtUnmasked,293 cpgIslandExtUnmasked,296 cpgIslandExtUnmasked,315 cpgIslandExtUnmasked,341 cpgIslandExtUnmasked,353 cpgIslandExtUnmasked,366 cpgIslandExtUnmasked,387 cpgIslandExtUnmasked,391 cpgIslandExtUnmasked,394 cpgIslandExtUnmasked,399 cpgIslandExtUnmasked,403 cpgIslandExtUnmasked,595 cpgIslandSuper,91 cpgIslandSuper,108 cpgIslandSuper,144 cpgIslandSuper,171 cpgIslandSuper,200 cpgIslandSuper,221 cpgIslandSuper,264 cpgIslandSuper,277 cpgIslandSuper,280 cpgIslandSuper,290 cpgIslandSuper,293 cpgIslandSuper,312 cpgIslandSuper,338 cpgIslandSuper,350 cpgIslandSuper,363 cpgIslandSuper,384 cpgIslandSuper,388 cpgIslandSuper,391 cpgIslandSuper,396 cpgIslandSuper,400 cpgIslandSuper,592 ctgPos2,13 ctgPos2,29 ensGene,40 ensGene,141 est,40 est,70 est,79 est,97 est,99 est,134 est,173 est,199 est,210 est,246 est,315 est,425 est,502 est,518 est,536 est,553 est,615 est,623 est,627 est,706 gap,24 gap,29 gap,36 gap,63 gap,69 gap,103 gap,163 gc5Base,19 gc5Base,46 gc5Base,52 gc5Base,67 gc5Base,76 gold,25 gold,36 gold,77 gold,103 gold,128 intronEst,31 intronEst,52 intronEst,64 intronEst,96 intronEst,108 intronEst,117 intronEst,151 intronEst,160 intronEst,178 intronEst,180 intronEst,215 intronEst,254 intronEst,280 intronEst,291 intronEst,327 intronEst,396 intronEst,506 intronEst,583 intronEst,599 intronEst,617 intronEst,634 intronEst,696 intronEst,704 intronEst,708 intronEst,787 microsat,27 microsat,55 microsat,64 microsat,81 mrna,51 mrna,80 mrna,119 mrna,145 mrna,156 mrna,192 mrna,261 mrna,364 mrna,422 nestedRepeats,4 nestedRepeats,20 nestedRepeats,27 nestedRepeats,48 nestedRepeats,83 nestedRepeats,93 nestedRepeats,108 nestedRepeats,189 nestedRepeats,195 nestedRepeats,203 nestedRepeats,228 nestedRepeats,252 nestedRepeats,350 nestedRepeats,365 nestedRepeats,378 nestedRepeats,399 netBosTau7,18 netBosTau7,65 netBosTau7,181 netBosTau7,201 netBosTau7,253 netBosTau7,274 netBosTau7,357 netBosTau7,367 netBosTau7,485 netBosTau7,505 netBosTau7,638 netBosTau7,643 netBosTau7,661 netBosTau7,681 netBosTau7,881 netBosTau7,956 netBosTau7,978 netBosTau7,1002 netBosTau7,1016 netHg19,17 netHg19,64 netHg19,179 netHg19,199 netHg19,251 netHg19,272 netHg19,354 netHg19,364 netHg19,482 netHg19,502 netHg19,635 netHg19,640 netHg19,658 netHg19,678 netHg19,878 netHg19,953 netHg19,975 netHg19,999 netHg19,1013 netMm9,17 netMm9,64 netMm9,179 netMm9,199 netMm9,251 netMm9,272 netMm9,354 netMm9,364 netMm9,482 netMm9,502 netMm9,635 netMm9,640 netMm9,658 netMm9,678 netMm9,878 netMm9,953 netMm9,975 netMm9,999 netMm9,1013 netMonDom5,17 netMonDom5,64 netMonDom5,179 netMonDom5,199 netMonDom5,251 netMonDom5,272 netMonDom5,354 netMonDom5,364 netMonDom5,482 netMonDom5,502 netMonDom5,635 netMonDom5,640 netMonDom5,658 netMonDom5,678 netMonDom5,878 netMonDom5,953 netMonDom5,975 netMonDom5,999 netMonDom5,1013 nscanGene,72 nscanGene,80 nscanGene,111 nscanGene,137 numtS,34 numtS,42 numtS,64 numtS,72 numtS,95 numtS,126 numtS,167 numtS,184 numtS,196 numtS,208 numtS,216 numtS,264 numtS,319 numtS,328 numtS,340 numtS,348 numtS,375 numtS,413 numtS,435 numtS,487 numtS,488 numtS,495 numtSAssembled,36 numtSAssembled,44 numtSAssembled,66 numtSAssembled,74 numtSAssembled,97 numtSAssembled,128 numtSAssembled,169 numtSAssembled,186 numtSAssembled,198 numtSAssembled,210 numtSAssembled,218 numtSAssembled,266 numtSAssembled,321 numtSAssembled,330 numtSAssembled,342 numtSAssembled,350 numtSAssembled,377 numtSAssembled,415 numtSAssembled,437 numtSAssembled,489 numtSAssembled,490 numtSAssembled,497 numtSMitochondrion,38 numtSMitochondrion,46 numtSMitochondrion,68 numtSMitochondrion,76 numtSMitochondrion,99 numtSMitochondrion,130 numtSMitochondrion,171 numtSMitochondrion,188 numtSMitochondrion,200 numtSMitochondrion,212 numtSMitochondrion,220 numtSMitochondrion,268 numtSMitochondrion,323 numtSMitochondrion,332 numtSMitochondrion,344 numtSMitochondrion,352 numtSMitochondrion,379 numtSMitochondrion,417 numtSMitochondrion,439 numtSMitochondrion,491 numtSMitochondrion,492 numtSMitochondrion,499 numtSeq2012,37 numtSeq2012,45 numtSeq2012,67 numtSeq2012,75 numtSeq2012,98 numtSeq2012,129 numtSeq2012,170 numtSeq2012,187 numtSeq2012,199 numtSeq2012,211 numtSeq2012,219 numtSeq2012,267 numtSeq2012,322 numtSeq2012,331 numtSeq2012,343 numtSeq2012,351 numtSeq2012,378 numtSeq2012,416 numtSeq2012,438 numtSeq2012,490 numtSeq2012,491 numtSeq2012,498 rmsk,39 rmsk,59 rmsk,84 rmsk,151 rmsk,206 rmsk,216 rmsk,234 rmsk,246 rmsk,264 rmsk,373 rmsk,388 rmsk,401 rmsk,422 simpleRepeat,40 tRNAs,49 tRNAs,72 tRNAs,82 tRNAs,90 tRNAs,164 tRNAs,232 tRNAs,245 tRNAs,273 tRNAs,320 tRNAs,358 tRNAs,373 tRNAs,450 tRNAs,481 tRNAs,496 xenoMrna,17 xenoMrna,56 xenoMrna,74 xenoMrna,96 xenoMrna,106 xenoMrna,155 xenoMrna,194 xenoMrna,220 xenoMrna,231 xenoMrna,267 xenoMrna,336 xenoMrna,439 xenoMrna,497 xenoRefGene,61 xenoRefGene,80 xenoRefGene,94 xenoRefGene,119 xenoRefGene,230 xenoRefGene,262 xenoRefGene,374 off chainBosTau7,336 chainBosTau7,342 chainHg19,333 chainHg19,339 chainMm9,333 chainMm9,339 chainMonDom5,333 chainMonDom5,339 chainNetBosTau7,339 chainNetBosTau7,345 chainNetHg19,336 chainNetHg19,342 chainNetMm9,336 chainNetMm9,342 chainNetMonDom5,336 chainNetMonDom5,342 netBosTau7,336 netBosTau7,342 netHg19,333 netHg19,339 netMm9,333 netMm9,339 netMonDom5,333 netMonDom5,339 xenoRefGene,132 often chainBosTau7,211 chainBosTau7,223 chainHg19,209 chainHg19,221 chainMm9,209 chainMm9,221 chainMonDom5,209 chainMonDom5,221 chainNetBosTau7,214 chainNetBosTau7,226 chainNetHg19,212 chainNetHg19,224 chainNetMm9,212 chainNetMm9,224 chainNetMonDom5,212 chainNetMonDom5,224 netBosTau7,211 netBosTau7,223 netHg19,209 netHg19,221 netMm9,209 netMm9,221 netMonDom5,209 netMonDom5,221 oligo-dt est,495 intronEst,576 omitted nestedRepeats,165 on augustusGene,29 augustusGene,37 augustusGene,151 bamAllNumtSSorted,5 blastHg18KG,150 chainBosTau7,324 chainBosTau7,350 chainBosTau7,453 chainBosTau7,467 chainBosTau7,517 chainBosTau7,522 chainBosTau7,537 chainBosTau7,768 chainHg19,321 chainHg19,347 chainHg19,450 chainHg19,464 chainHg19,514 chainHg19,519 chainHg19,534 chainHg19,765 chainMm9,321 chainMm9,347 chainMm9,450 chainMm9,464 chainMm9,514 chainMm9,519 chainMm9,534 chainMm9,765 chainMonDom5,321 chainMonDom5,347 chainMonDom5,450 chainMonDom5,464 chainMonDom5,514 chainMonDom5,519 chainMonDom5,534 chainMonDom5,765 chainNetBosTau7,327 chainNetBosTau7,353 chainNetBosTau7,456 chainNetBosTau7,470 chainNetBosTau7,520 chainNetBosTau7,525 chainNetBosTau7,540 chainNetBosTau7,771 chainNetHg19,324 chainNetHg19,350 chainNetHg19,453 chainNetHg19,467 chainNetHg19,517 chainNetHg19,522 chainNetHg19,537 chainNetHg19,768 chainNetMm9,324 chainNetMm9,350 chainNetMm9,453 chainNetMm9,467 chainNetMm9,517 chainNetMm9,522 chainNetMm9,537 chainNetMm9,768 chainNetMonDom5,324 chainNetMonDom5,350 chainNetMonDom5,453 chainNetMonDom5,467 chainNetMonDom5,517 chainNetMonDom5,522 chainNetMonDom5,537 chainNetMonDom5,768 cpgIslandExt,287 cpgIslandExt,323 cpgIslandExt,544 cpgIslandExt,551 cpgIslandExtUnmasked,5 cpgIslandExtUnmasked,290 cpgIslandExtUnmasked,326 cpgIslandExtUnmasked,547 cpgIslandExtUnmasked,554 cpgIslandSuper,287 cpgIslandSuper,323 cpgIslandSuper,544 cpgIslandSuper,551 ensGene,27 ensGene,125 ensGene,130 ensGene,136 ensGene,147 est,229 est,278 gap,66 intronEst,310 intronEst,359 mrna,175 mrna,224 nestedRepeats,141 nestedRepeats,176 nestedRepeats,277 netBosTau7,324 netBosTau7,350 netBosTau7,453 netBosTau7,467 netBosTau7,517 netBosTau7,522 netBosTau7,537 netBosTau7,768 netHg19,321 netHg19,347 netHg19,450 netHg19,464 netHg19,514 netHg19,519 netHg19,534 netHg19,765 netMm9,321 netMm9,347 netMm9,450 netMm9,464 netMm9,514 netMm9,519 netMm9,534 netMm9,765 netMonDom5,321 netMonDom5,347 netMonDom5,450 netMonDom5,464 netMonDom5,514 netMonDom5,519 netMonDom5,534 netMonDom5,765 numtS,149 numtS,190 numtS,280 numtS,287 numtS,308 numtS,313 numtS,322 numtS,364 numtS,378 numtS,602 numtSAssembled,151 numtSAssembled,192 numtSAssembled,282 numtSAssembled,289 numtSAssembled,310 numtSAssembled,315 numtSAssembled,324 numtSAssembled,366 numtSAssembled,380 numtSAssembled,604 numtSMitochondrion,2 numtSMitochondrion,6 numtSMitochondrion,153 numtSMitochondrion,194 numtSMitochondrion,284 numtSMitochondrion,291 numtSMitochondrion,312 numtSMitochondrion,317 numtSMitochondrion,326 numtSMitochondrion,368 numtSMitochondrion,382 numtSMitochondrion,606 numtSeq2012,152 numtSeq2012,193 numtSeq2012,283 numtSeq2012,290 numtSeq2012,311 numtSeq2012,316 numtSeq2012,325 numtSeq2012,367 numtSeq2012,381 numtSeq2012,605 rmsk,74 tRNAs,269 xenoMrna,250 xenoMrna,299 xenoRefGene,342 once est,263 intronEst,344 mrna,209 xenoMrna,284 one augustusGene,169 chainBosTau7,189 chainBosTau7,358 chainBosTau7,504 chainBosTau7,795 chainBosTau7,891 chainHg19,187 chainHg19,355 chainHg19,501 chainHg19,792 chainHg19,888 chainMm9,187 chainMm9,355 chainMm9,501 chainMm9,792 chainMm9,888 chainMonDom5,187 chainMonDom5,355 chainMonDom5,501 chainMonDom5,792 chainMonDom5,888 chainNetBosTau7,192 chainNetBosTau7,361 chainNetBosTau7,507 chainNetBosTau7,798 chainNetBosTau7,894 chainNetHg19,190 chainNetHg19,358 chainNetHg19,504 chainNetHg19,795 chainNetHg19,891 chainNetMm9,190 chainNetMm9,358 chainNetMm9,504 chainNetMm9,795 chainNetMm9,891 chainNetMonDom5,190 chainNetMonDom5,358 chainNetMonDom5,504 chainNetMonDom5,795 chainNetMonDom5,891 cpgIslandExt,233 cpgIslandExtUnmasked,236 cpgIslandSuper,233 est,170 est,281 est,314 intronEst,67 intronEst,251 intronEst,362 intronEst,395 mrna,116 mrna,227 mrna,260 netBosTau7,189 netBosTau7,358 netBosTau7,504 netBosTau7,795 netBosTau7,891 netHg19,187 netHg19,355 netHg19,501 netHg19,792 netHg19,888 netMm9,187 netMm9,355 netMm9,501 netMm9,792 netMm9,888 netMonDom5,187 netMonDom5,355 netMonDom5,501 netMonDom5,792 netMonDom5,888 numtS,460 numtSAssembled,462 numtSMitochondrion,464 numtSeq2012,463 xenoMrna,191 xenoMrna,302 xenoMrna,335 only chainBosTau7,354 chainHg19,351 chainMm9,351 chainMonDom5,351 chainNetBosTau7,357 chainNetHg19,354 chainNetMm9,354 chainNetMonDom5,354 cpgIslandExt,196 cpgIslandExtUnmasked,199 cpgIslandSuper,196 est,154 est,294 est,367 est,400 est,697 intronEst,235 intronEst,375 intronEst,448 intronEst,481 intronEst,778 microsat,61 mrna,100 mrna,240 mrna,313 mrna,413 netBosTau7,354 netHg19,351 netMm9,351 netMonDom5,351 xenoMrna,175 xenoMrna,315 xenoMrna,388 xenoMrna,487 xenoRefGene,208 xenoRefGene,253 open-3.0 nestedRepeats,331 rmsk,354 opin nestedRepeats,385 nestedRepeats,407 rmsk,408 rmsk,430 opossum chainMonDom5,1 chainMonDom5,3 chainMonDom5,65 chainMonDom5,96 chainMonDom5,148 chainMonDom5,266 chainMonDom5,291 chainMonDom5,572 chainMonDom5,620 chainNetMonDom5,1 chainNetMonDom5,4 chainNetMonDom5,68 chainNetMonDom5,99 chainNetMonDom5,151 chainNetMonDom5,269 chainNetMonDom5,294 chainNetMonDom5,575 chainNetMonDom5,623 chainNetMonDom5Viewchain,2 chainNetMonDom5Viewnet,2 netMonDom5,1 netMonDom5,3 netMonDom5,65 netMonDom5,96 netMonDom5,148 netMonDom5,266 netMonDom5,291 netMonDom5,572 netMonDom5,620 opposite chainBosTau7,549 chainHg19,546 chainMm9,546 chainMonDom5,546 chainNetBosTau7,552 chainNetHg19,549 chainNetMm9,549 chainNetMonDom5,549 netBosTau7,549 netHg19,546 netMm9,546 netMonDom5,546 option augustusGene,167 augustusGene,187 est,413 intronEst,494 mrna,350 xenoMrna,425 xenoRefGene,112 xenoRefGene,164 optional xenoRefGene,142 options est,442 gc5Base,70 intronEst,523 mrna,381 xenoMrna,456 or blastHg18KG,196 chainBosTau7,31 chainBosTau7,129 chainBosTau7,152 chainBosTau7,184 chainBosTau7,488 chainBosTau7,863 chainBosTau7,892 chainHg19,30 chainHg19,127 chainHg19,150 chainHg19,182 chainHg19,485 chainHg19,860 chainHg19,889 chainMm9,30 chainMm9,127 chainMm9,150 chainMm9,182 chainMm9,485 chainMm9,860 chainMm9,889 chainMonDom5,30 chainMonDom5,127 chainMonDom5,150 chainMonDom5,182 chainMonDom5,485 chainMonDom5,860 chainMonDom5,889 chainNetBosTau7,34 chainNetBosTau7,132 chainNetBosTau7,155 chainNetBosTau7,187 chainNetBosTau7,491 chainNetBosTau7,866 chainNetBosTau7,895 chainNetHg19,33 chainNetHg19,130 chainNetHg19,153 chainNetHg19,185 chainNetHg19,488 chainNetHg19,863 chainNetHg19,892 chainNetMm9,33 chainNetMm9,130 chainNetMm9,153 chainNetMm9,185 chainNetMm9,488 chainNetMm9,863 chainNetMm9,892 chainNetMonDom5,33 chainNetMonDom5,130 chainNetMonDom5,153 chainNetMonDom5,185 chainNetMonDom5,488 chainNetMonDom5,863 chainNetMonDom5,892 cpgIslandExt,127 cpgIslandExt,266 cpgIslandExt,523 cpgIslandExtUnmasked,130 cpgIslandExtUnmasked,269 cpgIslandExtUnmasked,526 cpgIslandSuper,127 cpgIslandSuper,266 cpgIslandSuper,523 ensGene,75 ensGene,96 ensGene,117 est,171 est,306 est,325 est,334 est,399 est,477 est,509 est,523 intronEst,252 intronEst,387 intronEst,406 intronEst,415 intronEst,480 intronEst,558 intronEst,590 intronEst,604 mrna,117 mrna,252 mrna,271 mrna,280 nestedRepeats,96 nestedRepeats,117 nestedRepeats,158 netBosTau7,31 netBosTau7,129 netBosTau7,152 netBosTau7,184 netBosTau7,488 netBosTau7,863 netBosTau7,892 netHg19,30 netHg19,127 netHg19,150 netHg19,182 netHg19,485 netHg19,860 netHg19,889 netMm9,30 netMm9,127 netMm9,150 netMm9,182 netMm9,485 netMm9,860 netMm9,889 netMonDom5,30 netMonDom5,127 netMonDom5,150 netMonDom5,182 netMonDom5,485 netMonDom5,860 netMonDom5,889 numtS,37 numtSAssembled,39 numtSMitochondrion,41 numtSeq2012,40 rmsk,251 rmsk,280 tRNAs,183 tRNAs,211 tRNAs,235 tRNAs,300 xenoMrna,92 xenoMrna,192 xenoMrna,327 xenoMrna,346 xenoMrna,355 xenoRefGene,130 order gap,60 gold,100 tRNAs,250 organ est,195 est,201 intronEst,276 intronEst,282 mrna,141 mrna,147 xenoMrna,216 xenoMrna,222 organism chainBosTau7,333 chainBosTau7,363 chainHg19,330 chainHg19,360 chainMm9,330 chainMm9,360 chainMonDom5,330 chainMonDom5,360 chainNetBosTau7,336 chainNetBosTau7,366 chainNetHg19,333 chainNetHg19,363 chainNetMm9,333 chainNetMm9,363 chainNetMonDom5,333 chainNetMonDom5,363 netBosTau7,333 netBosTau7,363 netHg19,330 netHg19,360 netMm9,330 netMm9,360 netMonDom5,330 netMonDom5,360 organism-specific blastHg18KG,90 organisms chainBosTau7,908 chainHg19,905 chainMm9,905 chainMonDom5,905 chainNetBosTau7,911 chainNetHg19,908 chainNetMm9,908 chainNetMonDom5,908 nestedRepeats,295 netBosTau7,908 netHg19,905 netMm9,905 netMonDom5,905 rmsk,302 xenoMrna,25 xenoRefGene,20 organizes chainBosTau7,617 chainHg19,614 chainMm9,614 chainMonDom5,614 chainNetBosTau7,620 chainNetHg19,617 chainNetMm9,617 chainNetMonDom5,617 netBosTau7,617 netHg19,614 netMm9,614 netMonDom5,614 orientation chainBosTau7,550 chainHg19,547 chainMm9,547 chainMonDom5,547 chainNetBosTau7,553 chainNetHg19,550 chainNetMm9,550 chainNetMonDom5,550 gap,62 gold,102 netBosTau7,550 netHg19,547 netMm9,547 netMonDom5,547 numtS,263 numtSAssembled,265 numtSMitochondrion,267 numtSeq2012,266 xenoMrna,73 xenoMrna,95 orientations xenoMrna,105 origin nestedRepeats,398 rmsk,421 original nestedRepeats,84 orthologs chainBosTau7,286 chainHg19,284 chainMm9,284 chainMonDom5,284 chainNetBosTau7,289 chainNetHg19,287 chainNetMm9,287 chainNetMonDom5,287 netBosTau7,286 netHg19,284 netMm9,284 netMonDom5,284 ostell est,753 est,777 intronEst,837 intronEst,861 mrna,470 mrna,494 xenoMrna,545 xenoMrna,569 other augustusGene,208 chainBosTau7,25 chainBosTau7,415 chainBosTau7,508 chainHg19,24 chainHg19,412 chainHg19,505 chainMm9,24 chainMm9,412 chainMm9,505 chainMonDom5,24 chainMonDom5,412 chainMonDom5,505 chainNetBosTau7,28 chainNetBosTau7,418 chainNetBosTau7,511 chainNetHg19,27 chainNetHg19,415 chainNetHg19,508 chainNetMm9,27 chainNetMm9,415 chainNetMm9,508 chainNetMonDom5,27 chainNetMonDom5,415 chainNetMonDom5,508 cpgIslandExt,135 cpgIslandExtUnmasked,138 cpgIslandSuper,135 ctgPos2,49 gap,146 nestedRepeats,376 netBosTau7,25 netBosTau7,415 netBosTau7,508 netHg19,24 netHg19,412 netHg19,505 netMm9,24 netMm9,412 netMm9,505 netMonDom5,24 netMonDom5,412 netMonDom5,505 rmsk,195 rmsk,399 tRNAs,243 xenoMrna,1 xenoMrna,26 xenoRefGene,1 xenoRefGene,21 others cpgIslandExt,247 cpgIslandExtUnmasked,250 cpgIslandSuper,247 nestedRepeats,214 otherwise cpgIslandExt,185 cpgIslandExtUnmasked,188 cpgIslandSuper,185 est,678 intronEst,759 ottonello tRNAs,478 ouml augustusGene,269 our augustusGene,43 cpgIslandExt,536 cpgIslandExt,545 cpgIslandExt,552 cpgIslandExtUnmasked,539 cpgIslandExtUnmasked,548 cpgIslandExtUnmasked,555 cpgIslandSuper,536 cpgIslandSuper,545 cpgIslandSuper,552 ensGene,33 ensGene,91 ensGene,98 ensGene,120 ensGene,131 ensGene,137 ensGene,148 rmsk,124 rmsk,129 out chainBosTau7,637 chainHg19,634 chainMm9,634 chainMonDom5,634 chainNetBosTau7,640 chainNetHg19,637 chainNetMm9,637 chainNetMonDom5,637 netBosTau7,637 netHg19,634 netMm9,634 netMonDom5,634 numtS,506 numtSAssembled,508 numtSMitochondrion,510 numtSeq2012,509 output cpgIslandExt,499 cpgIslandExtUnmasked,502 cpgIslandSuper,499 nestedRepeats,26 nestedRepeats,110 outputs rmsk,35 outside est,614 intronEst,695 over blastHg18KG,104 blastHg18KG,118 chainBosTau7,197 chainBosTau7,652 chainHg19,195 chainHg19,649 chainMm9,195 chainMm9,649 chainMonDom5,195 chainMonDom5,649 chainNetBosTau7,200 chainNetBosTau7,655 chainNetHg19,198 chainNetHg19,652 chainNetMm9,198 chainNetMm9,652 chainNetMonDom5,198 chainNetMonDom5,652 cpgIslandExt,97 cpgIslandExtUnmasked,100 cpgIslandSuper,97 netBosTau7,197 netBosTau7,652 netHg19,195 netHg19,649 netMm9,195 netMm9,649 netMonDom5,195 netMonDom5,649 overlap gap,117 overlapping chainBosTau7,114 chainBosTau7,177 chainHg19,112 chainHg19,175 chainMm9,112 chainMm9,175 chainMonDom5,112 chainMonDom5,175 chainNetBosTau7,117 chainNetBosTau7,180 chainNetHg19,115 chainNetHg19,178 chainNetMm9,115 chainNetMm9,178 chainNetMonDom5,115 chainNetMonDom5,178 netBosTau7,114 netBosTau7,177 netHg19,112 netHg19,175 netMm9,112 netMm9,175 netMonDom5,112 netMonDom5,175 p nestedRepeats,329 nscanGene,229 rmsk,352 pac chainBosTau7,1036 chainHg19,1033 chainMm9,1033 chainMonDom5,1033 chainNetBosTau7,1039 chainNetHg19,1036 chainNetMm9,1036 chainNetMonDom5,1036 netBosTau7,1036 netHg19,1033 netMm9,1033 netMonDom5,1033 pack chainBosTau7,233 chainHg19,231 chainMm9,231 chainMonDom5,231 chainNetBosTau7,236 chainNetHg19,234 chainNetMm9,234 chainNetMonDom5,234 nestedRepeats,116 netBosTau7,233 netHg19,231 netMm9,231 netMonDom5,231 page cpgIslandExt,223 cpgIslandExt,547 cpgIslandExtUnmasked,226 cpgIslandExtUnmasked,550 cpgIslandSuper,223 cpgIslandSuper,547 ensGene,134 ensGene,173 est,110 est,422 est,443 intronEst,191 intronEst,503 intronEst,524 mrna,56 mrna,361 mrna,382 rmsk,77 xenoMrna,131 xenoMrna,436 xenoMrna,457 xenoRefGene,98 xenoRefGene,189 pages chainBosTau7,773 chainHg19,770 chainMm9,770 chainMonDom5,770 chainNetBosTau7,776 chainNetHg19,773 chainNetMm9,773 chainNetMonDom5,773 netBosTau7,773 netHg19,770 netMm9,770 netMonDom5,770 pair gap,76 nscanGene,65 pairs numtS,153 numtSAssembled,155 numtSMitochondrion,157 numtSeq2012,156 pairwise chainBosTau7,1014 chainBosTau7,1032 chainHg19,1011 chainHg19,1029 chainMm9,1011 chainMm9,1029 chainMonDom5,1011 chainMonDom5,1029 chainNetBosTau7,1017 chainNetBosTau7,1035 chainNetHg19,1014 chainNetHg19,1032 chainNetMm9,1014 chainNetMm9,1032 chainNetMonDom5,1014 chainNetMonDom5,1032 netBosTau7,1014 netBosTau7,1032 netHg19,1011 netHg19,1029 netMm9,1011 netMm9,1029 netMonDom5,1011 netMonDom5,1029 paralogs chainBosTau7,226 chainHg19,224 chainMm9,224 chainMonDom5,224 chainNetBosTau7,229 chainNetHg19,227 chainNetMm9,227 chainNetMonDom5,227 netBosTau7,226 netHg19,224 netMm9,224 netMonDom5,224 parent cpgIslandExt,83 cpgIslandExtUnmasked,86 cpgIslandSuper,83 part blastHg18KG,140 chainBosTau7,273 chainHg19,271 chainMm9,271 chainMonDom5,271 chainNetBosTau7,276 chainNetHg19,274 chainNetMm9,274 chainNetMonDom5,274 netBosTau7,273 netHg19,271 netMm9,271 netMonDom5,271 particular augustusGene,234 chainBosTau7,199 chainHg19,197 chainMm9,197 chainMonDom5,197 chainNetBosTau7,202 chainNetHg19,200 chainNetMm9,200 chainNetMonDom5,200 netBosTau7,199 netHg19,197 netMm9,197 netMonDom5,197 particularly cpgIslandExt,21 cpgIslandExtUnmasked,24 cpgIslandSuper,21 parts chainBosTau7,40 chainBosTau7,51 chainHg19,39 chainHg19,50 chainMm9,39 chainMm9,50 chainMonDom5,39 chainMonDom5,50 chainNetBosTau7,43 chainNetBosTau7,54 chainNetHg19,42 chainNetHg19,53 chainNetMm9,42 chainNetMm9,53 chainNetMonDom5,42 chainNetMonDom5,53 netBosTau7,40 netBosTau7,51 netHg19,39 netHg19,50 netMm9,39 netMm9,50 netMonDom5,39 netMonDom5,50 xenoMrna,68 pasa nscanGene,109 patterns augustusGene,56 pavesi tRNAs,41 tRNAs,470 penalty blastHg18KG,97 pennsylvania chainBosTau7,919 chainBosTau7,1022 chainHg19,916 chainHg19,1019 chainMm9,916 chainMm9,1019 chainMonDom5,916 chainMonDom5,1019 chainNetBosTau7,922 chainNetBosTau7,1025 chainNetHg19,919 chainNetHg19,1022 chainNetMm9,919 chainNetMm9,1022 chainNetMonDom5,919 chainNetMonDom5,1022 netBosTau7,919 netBosTau7,1022 netHg19,916 netHg19,1019 netMm9,916 netMm9,1019 netMonDom5,916 netMonDom5,1019 peptides blastHg18KG,21 per tRNAs,94 percent gc5Base,2 gc5Base,4 gc5Base,14 percentage cpgIslandExt,345 cpgIslandExtUnmasked,348 cpgIslandSuper,345 gc5Base,18 perfect microsat,31 perform numtS,121 numtSAssembled,123 numtSMitochondrion,125 numtSeq2012,124 performed cpgIslandExt,405 cpgIslandExtUnmasked,408 cpgIslandSuper,405 numtS,439 numtSAssembled,441 numtSMitochondrion,443 numtSeq2012,442 perhaps cpgIslandExt,137 cpgIslandExtUnmasked,140 cpgIslandSuper,137 est,605 intronEst,686 period microsat,65 permitted rmsk,314 perutz nscanGene,153 ph.d chainBosTau7,1019 chainHg19,1016 chainMm9,1016 chainMonDom5,1016 chainNetBosTau7,1022 chainNetHg19,1019 chainNetMm9,1019 chainNetMonDom5,1019 netBosTau7,1019 netHg19,1016 netMm9,1016 netMonDom5,1016 pharmacological numtS,492 numtSAssembled,494 numtSMitochondrion,496 numtSeq2012,495 phylogenetic nscanGene,86 pig bamAllNumtSSorted,3 blastHg18KG,74 blastHg18KG,83 chainBosTau7,74 chainBosTau7,100 chainBosTau7,157 chainBosTau7,203 chainBosTau7,269 chainBosTau7,276 chainBosTau7,576 chainBosTau7,628 chainHg19,72 chainHg19,98 chainHg19,155 chainHg19,201 chainHg19,267 chainHg19,274 chainHg19,573 chainHg19,625 chainMm9,72 chainMm9,98 chainMm9,155 chainMm9,201 chainMm9,267 chainMm9,274 chainMm9,573 chainMm9,625 chainMonDom5,72 chainMonDom5,98 chainMonDom5,155 chainMonDom5,201 chainMonDom5,267 chainMonDom5,274 chainMonDom5,573 chainMonDom5,625 chainNetBosTau7,77 chainNetBosTau7,103 chainNetBosTau7,160 chainNetBosTau7,206 chainNetBosTau7,272 chainNetBosTau7,279 chainNetBosTau7,579 chainNetBosTau7,631 chainNetHg19,75 chainNetHg19,101 chainNetHg19,158 chainNetHg19,204 chainNetHg19,270 chainNetHg19,277 chainNetHg19,576 chainNetHg19,628 chainNetMm9,75 chainNetMm9,101 chainNetMm9,158 chainNetMm9,204 chainNetMm9,270 chainNetMm9,277 chainNetMm9,576 chainNetMm9,628 chainNetMonDom5,75 chainNetMonDom5,101 chainNetMonDom5,158 chainNetMonDom5,204 chainNetMonDom5,270 chainNetMonDom5,277 chainNetMonDom5,576 chainNetMonDom5,628 est,1 est,3 est,16 est,643 gap,26 gold,27 gold,30 intronEst,3 intronEst,18 intronEst,124 intronEst,724 mrna,1 mrna,3 mrna,17 mrna,385 netBosTau7,74 netBosTau7,100 netBosTau7,157 netBosTau7,203 netBosTau7,269 netBosTau7,276 netBosTau7,576 netBosTau7,628 netHg19,72 netHg19,98 netHg19,155 netHg19,201 netHg19,267 netHg19,274 netHg19,573 netHg19,625 netMm9,72 netMm9,98 netMm9,155 netMm9,201 netMm9,267 netMm9,274 netMm9,573 netMm9,625 netMonDom5,72 netMonDom5,98 netMonDom5,155 netMonDom5,201 netMonDom5,267 netMonDom5,274 netMonDom5,573 netMonDom5,625 nscanGene,99 nscanGene,112 numtS,2 numtS,103 numtS,107 numtS,135 numtS,169 numtS,362 numtS,369 numtS,415 numtS,421 numtSAssembled,3 numtSAssembled,105 numtSAssembled,109 numtSAssembled,137 numtSAssembled,171 numtSAssembled,364 numtSAssembled,371 numtSAssembled,417 numtSAssembled,423 numtSMitochondrion,4 numtSMitochondrion,107 numtSMitochondrion,111 numtSMitochondrion,139 numtSMitochondrion,173 numtSMitochondrion,366 numtSMitochondrion,373 numtSMitochondrion,419 numtSMitochondrion,425 numtSeq2012,3 numtSeq2012,106 numtSeq2012,110 numtSeq2012,138 numtSeq2012,172 numtSeq2012,365 numtSeq2012,372 numtSeq2012,418 numtSeq2012,424 xenoMrna,28 xenoMrna,465 xenoRefGene,23 xenoRefGene,222 place chainBosTau7,792 chainHg19,789 chainMm9,789 chainMonDom5,789 chainNetBosTau7,795 chainNetHg19,792 chainNetMm9,792 chainNetMonDom5,792 netBosTau7,792 netHg19,789 netMm9,789 netMonDom5,789 placed chainBosTau7,834 chainHg19,831 chainMm9,831 chainMonDom5,831 chainNetBosTau7,837 chainNetHg19,834 chainNetMm9,834 chainNetMonDom5,834 netBosTau7,834 netHg19,831 netMm9,831 netMonDom5,831 places est,687 intronEst,768 mrna,403 xenoMrna,477 xenoRefGene,243 plasmid est,466 intronEst,547 please ensGene,48 ensGene,167 tRNAs,278 tRNAs,282 tRNAs,361 pmc chainBosTau7,1081 chainBosTau7,1112 chainHg19,1078 chainHg19,1109 chainMm9,1078 chainMm9,1109 chainMonDom5,1078 chainMonDom5,1109 chainNetBosTau7,1084 chainNetBosTau7,1115 chainNetHg19,1081 chainNetHg19,1112 chainNetMm9,1081 chainNetMm9,1112 chainNetMonDom5,1081 chainNetMonDom5,1112 ensGene,213 est,769 est,795 est,813 intronEst,853 intronEst,879 intronEst,897 microsat,136 mrna,486 mrna,512 mrna,530 netBosTau7,1081 netBosTau7,1112 netHg19,1078 netHg19,1109 netMm9,1078 netMm9,1109 netMonDom5,1078 netMonDom5,1109 nscanGene,224 nscanGene,272 numtS,544 numtS,580 numtS,616 numtSAssembled,546 numtSAssembled,582 numtSAssembled,618 numtSMitochondrion,548 numtSMitochondrion,584 numtSMitochondrion,620 numtSeq2012,547 numtSeq2012,583 numtSeq2012,619 simpleRepeat,96 tRNAs,392 tRNAs,415 tRNAs,468 tRNAs,511 xenoMrna,561 xenoMrna,587 xenoMrna,605 xenoRefGene,315 xenoRefGene,357 xenoRefGene,391 pmc1457044 nscanGene,273 pmc146525 tRNAs,469 pmc148217 microsat,137 simpleRepeat,97 pmc187518 est,814 intronEst,898 mrna,531 xenoMrna,606 xenoRefGene,316 pmc206470 nscanGene,225 pmc208784 chainBosTau7,1082 chainHg19,1079 chainMm9,1079 chainMonDom5,1079 chainNetBosTau7,1085 chainNetHg19,1082 chainNetMm9,1082 chainNetMonDom5,1082 netBosTau7,1082 netHg19,1079 netMm9,1079 netMonDom5,1079 pmc2447851 numtS,581 numtSAssembled,583 numtSMitochondrion,585 numtSeq2012,584 pmc2686519 tRNAs,393 pmc308124 tRNAs,416 pmc308779 est,796 intronEst,880 mrna,513 xenoMrna,588 pmc3228558 numtS,617 numtSAssembled,619 numtSMitochondrion,621 numtSeq2012,620 pmc3314570 numtS,545 numtSAssembled,547 numtSMitochondrion,549 numtSeq2012,548 pmc3531190 est,770 intronEst,854 mrna,487 xenoMrna,562 pmc3965018 xenoRefGene,358 pmc430961 chainBosTau7,1113 chainHg19,1110 chainMm9,1110 chainMonDom5,1110 chainNetBosTau7,1116 chainNetHg19,1113 chainNetMm9,1113 chainNetMonDom5,1113 netBosTau7,1113 netHg19,1110 netMm9,1110 netMonDom5,1110 pmc523650 tRNAs,512 pmc539979 xenoRefGene,392 pmc99161 ensGene,214 pmid augustusGene,314 augustusGene,339 chainBosTau7,1041 chainBosTau7,1079 chainBosTau7,1110 chainHg19,1038 chainHg19,1076 chainHg19,1107 chainMm9,1038 chainMm9,1076 chainMm9,1107 chainMonDom5,1038 chainMonDom5,1076 chainMonDom5,1107 chainNetBosTau7,1044 chainNetBosTau7,1082 chainNetBosTau7,1113 chainNetHg19,1041 chainNetHg19,1079 chainNetHg19,1110 chainNetMm9,1041 chainNetMm9,1079 chainNetMm9,1110 chainNetMonDom5,1041 chainNetMonDom5,1079 chainNetMonDom5,1110 cpgIslandExt,622 cpgIslandExtUnmasked,625 cpgIslandSuper,622 ensGene,211 est,767 est,793 est,811 intronEst,851 intronEst,877 intronEst,895 microsat,134 mrna,484 mrna,510 mrna,528 nestedRepeats,360 nestedRepeats,393 nestedRepeats,415 netBosTau7,1041 netBosTau7,1079 netBosTau7,1110 netHg19,1038 netHg19,1076 netHg19,1107 netMm9,1038 netMm9,1076 netMm9,1107 netMonDom5,1038 netMonDom5,1076 netMonDom5,1107 nscanGene,178 nscanGene,222 nscanGene,247 nscanGene,270 numtS,542 numtS,578 numtS,614 numtSAssembled,544 numtSAssembled,580 numtSAssembled,616 numtSMitochondrion,546 numtSMitochondrion,582 numtSMitochondrion,618 numtSeq2012,545 numtSeq2012,581 numtSeq2012,617 rmsk,383 rmsk,416 rmsk,438 simpleRepeat,94 tRNAs,390 tRNAs,413 tRNAs,438 tRNAs,466 tRNAs,509 xenoMrna,559 xenoMrna,585 xenoMrna,603 xenoRefGene,313 xenoRefGene,355 xenoRefGene,389 point est,548 intronEst,629 rmsk,269 pointing numtS,224 numtS,355 numtSAssembled,226 numtSAssembled,357 numtSMitochondrion,228 numtSMitochondrion,359 numtSeq2012,227 numtSeq2012,358 poly-a augustusGene,62 est,500 est,574 intronEst,581 intronEst,655 polymorphic microsat,41 simpleRepeat,46 population microsat,44 porcine gold,50 position chainBosTau7,708 chainHg19,705 chainMm9,705 chainMonDom5,705 chainNetBosTau7,711 chainNetHg19,708 chainNetMm9,708 chainNetMonDom5,708 netBosTau7,708 netHg19,705 netMm9,705 netMonDom5,705 positive tRNAs,88 possible chainBosTau7,409 chainHg19,406 chainMm9,406 chainMonDom5,406 chainNetBosTau7,412 chainNetHg19,409 chainNetMm9,409 chainNetMonDom5,409 netBosTau7,409 netHg19,406 netMm9,406 netMonDom5,406 possibly chainBosTau7,285 chainHg19,283 chainMm9,283 chainMonDom5,283 chainNetBosTau7,288 chainNetHg19,286 chainNetMm9,286 chainNetMonDom5,286 netBosTau7,285 netHg19,283 netMm9,283 netMonDom5,283 simpleRepeat,18 potential cpgIslandExt,175 cpgIslandExtUnmasked,178 cpgIslandSuper,175 tRNAs,422 pp tRNAs,367 pre-filters tRNAs,43 predicted blastHg18KG,24 blastHg18KG,38 cpgIslandExt,228 cpgIslandExtUnmasked,231 cpgIslandSuper,228 tRNAs,19 tRNAs,322 xenoMrna,112 xenoRefGene,68 prediction augustusGene,321 nscanGene,20 nscanGene,169 nscanGene,240 nscanGene,256 xenoRefGene,53 predictions augustusGene,6 augustusGene,11 augustusGene,18 augustusGene,26 augustusGene,191 blastHg18KG,12 ensGene,15 ensGene,19 ensGene,47 nscanGene,4 nscanGene,8 nscanGene,14 nscanGene,58 tRNAs,12 tRNAs,78 tRNAs,295 xenoRefGene,9 xenoRefGene,155 xenoRefGene,184 preferred numtS,466 numtSAssembled,468 numtSMitochondrion,470 numtSeq2012,469 prepared gc5Base,80 presence numtS,33 numtSAssembled,35 numtSMitochondrion,37 numtSeq2012,36 present cpgIslandExt,154 cpgIslandExtUnmasked,157 cpgIslandSuper,154 numtS,303 numtSAssembled,305 numtSMitochondrion,307 numtSeq2012,306 rmsk,44 presentation gc5Base,75 pressure cpgIslandExt,123 cpgIslandExtUnmasked,126 cpgIslandSuper,123 previous ensGene,139 previously chainBosTau7,912 chainHg19,909 chainMm9,909 chainMonDom5,909 chainNetBosTau7,915 chainNetHg19,912 chainNetMm9,912 chainNetMonDom5,912 netBosTau7,912 netHg19,909 netMm9,909 netMonDom5,909 primary tRNAs,73 tRNAs,234 primates numtS,524 numtSAssembled,526 numtSMitochondrion,528 numtSeq2012,527 primed est,492 intronEst,573 primer est,479 intronEst,560 priming est,575 intronEst,656 principal gap,101 printf cpgIslandExt,435 cpgIslandExtUnmasked,438 cpgIslandSuper,435 probably tRNAs,151 tRNAs,189 proc chainBosTau7,1066 chainHg19,1063 chainMm9,1063 chainMonDom5,1063 chainNetBosTau7,1069 chainNetHg19,1066 chainNetMm9,1066 chainNetMonDom5,1066 netBosTau7,1066 netHg19,1063 netMm9,1063 netMonDom5,1063 process chainBosTau7,816 chainHg19,813 chainMm9,813 chainMonDom5,813 chainNetBosTau7,819 chainNetHg19,816 chainNetMm9,816 chainNetMonDom5,816 gap,47 netBosTau7,816 netHg19,813 netMm9,813 netMonDom5,813 processed chainBosTau7,214 chainHg19,212 chainMm9,212 chainMonDom5,212 chainNetBosTau7,217 chainNetHg19,215 chainNetMm9,215 chainNetMonDom5,215 netBosTau7,214 netHg19,212 netMm9,212 netMonDom5,212 produce blastHg18KG,188 produced est,725 intronEst,809 mrna,442 numtS,99 numtSAssembled,101 numtSMitochondrion,103 numtSeq2012,102 xenoMrna,81 xenoMrna,517 xenoRefGene,281 program augustusGene,21 augustusGene,257 blastHg18KG,55 blastHg18KG,79 chainBosTau7,608 chainBosTau7,648 chainBosTau7,786 chainBosTau7,839 chainBosTau7,871 chainBosTau7,947 chainBosTau7,950 chainHg19,605 chainHg19,645 chainHg19,783 chainHg19,836 chainHg19,868 chainHg19,944 chainHg19,947 chainMm9,605 chainMm9,645 chainMm9,783 chainMm9,836 chainMm9,868 chainMm9,944 chainMm9,947 chainMonDom5,605 chainMonDom5,645 chainMonDom5,783 chainMonDom5,836 chainMonDom5,868 chainMonDom5,944 chainMonDom5,947 chainNetBosTau7,611 chainNetBosTau7,651 chainNetBosTau7,789 chainNetBosTau7,842 chainNetBosTau7,874 chainNetBosTau7,950 chainNetBosTau7,953 chainNetHg19,608 chainNetHg19,648 chainNetHg19,786 chainNetHg19,839 chainNetHg19,871 chainNetHg19,947 chainNetHg19,950 chainNetMm9,608 chainNetMm9,648 chainNetMm9,786 chainNetMm9,839 chainNetMm9,871 chainNetMm9,947 chainNetMm9,950 chainNetMonDom5,608 chainNetMonDom5,648 chainNetMonDom5,786 chainNetMonDom5,839 chainNetMonDom5,871 chainNetMonDom5,947 chainNetMonDom5,950 cpgIslandExt,559 cpgIslandExt,569 cpgIslandExt,594 cpgIslandExtUnmasked,562 cpgIslandExtUnmasked,572 cpgIslandExtUnmasked,597 cpgIslandSuper,559 cpgIslandSuper,569 cpgIslandSuper,594 microsat,100 microsat,120 mrna,395 nestedRepeats,30 netBosTau7,608 netBosTau7,648 netBosTau7,786 netBosTau7,839 netBosTau7,871 netBosTau7,947 netBosTau7,950 netHg19,605 netHg19,645 netHg19,783 netHg19,836 netHg19,868 netHg19,944 netHg19,947 netMm9,605 netMm9,645 netMm9,783 netMm9,836 netMm9,868 netMm9,944 netMm9,947 netMonDom5,605 netMonDom5,645 netMonDom5,783 netMonDom5,836 netMonDom5,868 netMonDom5,944 netMonDom5,947 numtS,408 numtSAssembled,410 numtSMitochondrion,412 numtSeq2012,411 rmsk,20 rmsk,34 simpleRepeat,62 simpleRepeat,80 tRNAs,28 tRNAs,53 tRNAs,63 tRNAs,446 programmatic ensGene,106 programs chainBosTau7,996 chainHg19,993 chainMm9,993 chainMonDom5,993 chainNetBosTau7,999 chainNetHg19,996 chainNetMm9,996 chainNetMonDom5,996 netBosTau7,996 netHg19,993 netMm9,993 netMonDom5,993 project ensGene,201 gap,21 gold,22 gold,53 xenoRefGene,298 projects est,569 est,588 est,618 intronEst,650 intronEst,669 intronEst,699 promoter cpgIslandExt,40 cpgIslandExtUnmasked,43 cpgIslandSuper,40 proofreading cpgIslandExt,93 cpgIslandExtUnmasked,96 cpgIslandSuper,93 protein blastHg18KG,111 blastHg18KG,130 xenoMrna,80 xenoMrna,113 protein-coding augustusGene,73 xenoRefGene,15 xenoRefGene,197 proteins blastHg18KG,2 blastHg18KG,4 blastHg18KG,39 xenoRefGene,378 provided nscanGene,22 numtS,230 numtS,361 numtS,398 numtS,471 numtSAssembled,232 numtSAssembled,363 numtSAssembled,400 numtSAssembled,473 numtSMitochondrion,234 numtSMitochondrion,365 numtSMitochondrion,402 numtSMitochondrion,475 numtSeq2012,233 numtSeq2012,364 numtSeq2012,401 numtSeq2012,474 tRNAs,318 providing augustusGene,254 ensGene,160 nestedRepeats,312 nscanGene,129 rmsk,335 provisional xenoRefGene,70 pruitt xenoRefGene,317 xenoRefGene,359 pseudo tRNAs,290 pseudogene nscanGene,258 pseudogenes chainBosTau7,215 chainBosTau7,229 chainHg19,213 chainHg19,227 chainMm9,213 chainMm9,227 chainMonDom5,213 chainMonDom5,227 chainNetBosTau7,218 chainNetBosTau7,232 chainNetHg19,216 chainNetHg19,230 chainNetMm9,216 chainNetMm9,230 chainNetMonDom5,216 chainNetMonDom5,230 netBosTau7,215 netBosTau7,229 netHg19,213 netHg19,227 netMm9,213 netMm9,227 netMonDom5,213 netMonDom5,227 tRNAs,299 psl est,54 intronEst,138 mrna,35 xenoMrna,40 public cpgIslandExt,537 cpgIslandExtUnmasked,540 cpgIslandSuper,537 ensGene,121 est,736 intronEst,820 mrna,453 xenoMrna,528 publicly nestedRepeats,275 pull-down xenoRefGene,171 purpose simpleRepeat,32 putative blastHg18KG,82 qgap chainBosTau7,720 chainHg19,717 chainMm9,717 chainMonDom5,717 chainNetBosTau7,723 chainNetHg19,720 chainNetMm9,720 chainNetMonDom5,720 netBosTau7,720 netHg19,717 netMm9,717 netMonDom5,717 quality est,72 mrna,53 xenoMrna,58 quantify numtS,568 numtSAssembled,570 numtSMitochondrion,572 numtSeq2012,571 queried cpgIslandExt,533 cpgIslandExtUnmasked,536 cpgIslandSuper,533 ensGene,112 query blastHg18KG,110 blastHg18KG,122 rmsk,47 rmsk,61 xenoMrna,76 quickly mrna,338 xenoMrna,413 xenoRefGene,150 quite simpleRepeat,45 quot chainBosTau7,27 chainBosTau7,29 chainBosTau7,34 chainBosTau7,36 chainBosTau7,103 chainBosTau7,105 chainBosTau7,232 chainBosTau7,234 chainBosTau7,236 chainBosTau7,238 chainBosTau7,341 chainBosTau7,343 chainBosTau7,682 chainBosTau7,684 chainHg19,26 chainHg19,28 chainHg19,33 chainHg19,35 chainHg19,101 chainHg19,103 chainHg19,230 chainHg19,232 chainHg19,234 chainHg19,236 chainHg19,338 chainHg19,340 chainHg19,679 chainHg19,681 chainMm9,26 chainMm9,28 chainMm9,33 chainMm9,35 chainMm9,101 chainMm9,103 chainMm9,230 chainMm9,232 chainMm9,234 chainMm9,236 chainMm9,338 chainMm9,340 chainMm9,679 chainMm9,681 chainMonDom5,26 chainMonDom5,28 chainMonDom5,33 chainMonDom5,35 chainMonDom5,101 chainMonDom5,103 chainMonDom5,230 chainMonDom5,232 chainMonDom5,234 chainMonDom5,236 chainMonDom5,338 chainMonDom5,340 chainMonDom5,679 chainMonDom5,681 chainNetBosTau7,30 chainNetBosTau7,32 chainNetBosTau7,37 chainNetBosTau7,39 chainNetBosTau7,106 chainNetBosTau7,108 chainNetBosTau7,235 chainNetBosTau7,237 chainNetBosTau7,239 chainNetBosTau7,241 chainNetBosTau7,344 chainNetBosTau7,346 chainNetBosTau7,685 chainNetBosTau7,687 chainNetHg19,29 chainNetHg19,31 chainNetHg19,36 chainNetHg19,38 chainNetHg19,104 chainNetHg19,106 chainNetHg19,233 chainNetHg19,235 chainNetHg19,237 chainNetHg19,239 chainNetHg19,341 chainNetHg19,343 chainNetHg19,682 chainNetHg19,684 chainNetMm9,29 chainNetMm9,31 chainNetMm9,36 chainNetMm9,38 chainNetMm9,104 chainNetMm9,106 chainNetMm9,233 chainNetMm9,235 chainNetMm9,237 chainNetMm9,239 chainNetMm9,341 chainNetMm9,343 chainNetMm9,682 chainNetMm9,684 chainNetMonDom5,29 chainNetMonDom5,31 chainNetMonDom5,36 chainNetMonDom5,38 chainNetMonDom5,104 chainNetMonDom5,106 chainNetMonDom5,233 chainNetMonDom5,235 chainNetMonDom5,237 chainNetMonDom5,239 chainNetMonDom5,341 chainNetMonDom5,343 chainNetMonDom5,682 chainNetMonDom5,684 ctgPos2,31 ctgPos2,33 ctgPos2,36 ctgPos2,38 ctgPos2,41 ctgPos2,43 ctgPos2,46 ctgPos2,48 est,238 est,240 est,289 est,291 est,305 est,307 est,341 est,343 est,358 est,360 gc5Base,58 gc5Base,62 gold,130 gold,132 gold,135 gold,137 gold,140 gold,142 intronEst,319 intronEst,321 intronEst,370 intronEst,372 intronEst,386 intronEst,388 intronEst,422 intronEst,424 intronEst,439 intronEst,441 mrna,184 mrna,186 mrna,235 mrna,237 mrna,251 mrna,253 mrna,287 mrna,289 mrna,304 mrna,306 netBosTau7,27 netBosTau7,29 netBosTau7,34 netBosTau7,36 netBosTau7,103 netBosTau7,105 netBosTau7,232 netBosTau7,234 netBosTau7,236 netBosTau7,238 netBosTau7,341 netBosTau7,343 netBosTau7,682 netBosTau7,684 netHg19,26 netHg19,28 netHg19,33 netHg19,35 netHg19,101 netHg19,103 netHg19,230 netHg19,232 netHg19,234 netHg19,236 netHg19,338 netHg19,340 netHg19,679 netHg19,681 netMm9,26 netMm9,28 netMm9,33 netMm9,35 netMm9,101 netMm9,103 netMm9,230 netMm9,232 netMm9,234 netMm9,236 netMm9,338 netMm9,340 netMm9,679 netMm9,681 netMonDom5,26 netMonDom5,28 netMonDom5,33 netMonDom5,35 netMonDom5,101 netMonDom5,103 netMonDom5,230 netMonDom5,232 netMonDom5,234 netMonDom5,236 netMonDom5,338 netMonDom5,340 netMonDom5,679 netMonDom5,681 rmsk,130 rmsk,133 rmsk,241 rmsk,242 rmsk,248 rmsk,250 rmsk,252 rmsk,254 rmsk,275 rmsk,276 tRNAs,205 tRNAs,207 tRNAs,289 tRNAs,291 xenoMrna,259 xenoMrna,261 xenoMrna,310 xenoMrna,312 xenoMrna,326 xenoMrna,328 xenoMrna,362 xenoMrna,364 xenoMrna,379 xenoMrna,381 r augustusGene,291 chainBosTau7,1046 chainBosTau7,1092 chainHg19,1043 chainHg19,1089 chainMm9,1043 chainMm9,1089 chainMonDom5,1043 chainMonDom5,1089 chainNetBosTau7,1049 chainNetBosTau7,1095 chainNetHg19,1046 chainNetHg19,1092 chainNetMm9,1046 chainNetMm9,1092 chainNetMonDom5,1046 chainNetMonDom5,1092 nestedRepeats,327 netBosTau7,1046 netBosTau7,1092 netHg19,1043 netHg19,1089 netMm9,1043 netMm9,1089 netMonDom5,1043 netMonDom5,1089 nscanGene,194 rmsk,350 tRNAs,397 r.s chainBosTau7,1011 chainHg19,1008 chainMm9,1008 chainMonDom5,1008 chainNetBosTau7,1014 chainNetHg19,1011 chainNetMm9,1011 chainNetMonDom5,1011 netBosTau7,1011 netHg19,1008 netMm9,1008 netMonDom5,1008 random augustusGene,119 est,571 intronEst,652 random-primed est,617 intronEst,698 raney blastHg18KG,198 range nestedRepeats,227 nestedRepeats,236 tRNAs,260 ranked chainBosTau7,783 chainHg19,780 chainMm9,780 chainMonDom5,780 chainNetBosTau7,786 chainNetHg19,783 chainNetMm9,783 chainNetMonDom5,783 netBosTau7,783 netHg19,780 netMm9,780 netMonDom5,780 rare cpgIslandExt,57 cpgIslandExt,118 cpgIslandExtUnmasked,60 cpgIslandExtUnmasked,121 cpgIslandSuper,57 cpgIslandSuper,118 rate tRNAs,89 rates nscanGene,95 rather est,572 intronEst,653 ratio cpgIslandExt,273 cpgIslandExt,349 cpgIslandExt,362 cpgIslandExtUnmasked,276 cpgIslandExtUnmasked,352 cpgIslandExtUnmasked,365 cpgIslandSuper,273 cpgIslandSuper,349 cpgIslandSuper,362 rc chainBosTau7,1094 chainHg19,1091 chainMm9,1091 chainMonDom5,1091 chainNetBosTau7,1097 chainNetHg19,1094 chainNetMm9,1094 chainNetMonDom5,1094 netBosTau7,1094 netHg19,1091 netMm9,1091 netMonDom5,1091 rmsk,200 reach numtS,47 numtSAssembled,49 numtSMitochondrion,51 numtSeq2012,50 read est,470 gap,75 intronEst,551 rearrangement chainBosTau7,291 chainBosTau7,495 chainBosTau7,1059 chainHg19,289 chainHg19,492 chainHg19,1056 chainMm9,289 chainMm9,492 chainMm9,1056 chainMonDom5,289 chainMonDom5,492 chainMonDom5,1056 chainNetBosTau7,294 chainNetBosTau7,498 chainNetBosTau7,1062 chainNetHg19,292 chainNetHg19,495 chainNetHg19,1059 chainNetMm9,292 chainNetMm9,495 chainNetMm9,1059 chainNetMonDom5,292 chainNetMonDom5,495 chainNetMonDom5,1059 netBosTau7,291 netBosTau7,495 netBosTau7,1059 netHg19,289 netHg19,492 netHg19,1056 netMm9,289 netMm9,492 netMm9,1056 netMonDom5,289 netMonDom5,492 netMonDom5,1056 rearrangements nestedRepeats,99 reason cpgIslandExt,136 cpgIslandExtUnmasked,139 cpgIslandSuper,136 reasonably est,538 est,561 intronEst,619 intronEst,642 record xenoRefGene,65 reduced intronEst,104 refer ensGene,49 reference numtS,102 numtS,160 numtS,423 numtS,593 numtSAssembled,104 numtSAssembled,162 numtSAssembled,425 numtSAssembled,595 numtSMitochondrion,106 numtSMitochondrion,164 numtSMitochondrion,427 numtSMitochondrion,597 numtSeq2012,105 numtSeq2012,163 numtSeq2012,426 numtSeq2012,596 xenoRefGene,29 xenoRefGene,344 xenoRefGene,366 references augustusGene,285 chainBosTau7,1009 chainHg19,1006 chainMm9,1006 chainMonDom5,1006 chainNetBosTau7,1012 chainNetHg19,1009 chainNetMm9,1009 chainNetMonDom5,1009 cpgIslandExt,603 cpgIslandExtUnmasked,606 cpgIslandSuper,603 ensGene,59 ensGene,174 est,742 intronEst,826 microsat,113 mrna,459 nestedRepeats,66 nestedRepeats,323 netBosTau7,1009 netHg19,1006 netMm9,1006 netMonDom5,1006 nscanGene,158 numtS,517 numtSAssembled,519 numtSMitochondrion,521 numtSeq2012,520 rmsk,102 rmsk,346 simpleRepeat,73 tRNAs,354 xenoMrna,534 xenoRefGene,299 referencing numtS,235 numtSAssembled,237 numtSMitochondrion,239 numtSeq2012,238 reflect numtS,199 numtSAssembled,201 numtSMitochondrion,203 numtSeq2012,202 reflects numtS,331 numtSAssembled,333 numtSMitochondrion,335 numtSeq2012,334 rmsk,213 refseq xenoRefGene,2 xenoRefGene,4 xenoRefGene,32 xenoRefGene,64 xenoRefGene,297 xenoRefGene,339 xenoRefGene,368 region chainBosTau7,200 chainBosTau7,398 chainHg19,198 chainHg19,395 chainMm9,198 chainMm9,395 chainMonDom5,198 chainMonDom5,395 chainNetBosTau7,203 chainNetBosTau7,401 chainNetHg19,201 chainNetHg19,398 chainNetMm9,201 chainNetMm9,398 chainNetMonDom5,201 chainNetMonDom5,398 cpgIslandExt,129 cpgIslandExtUnmasked,132 cpgIslandSuper,129 netBosTau7,200 netBosTau7,398 netHg19,198 netHg19,395 netMm9,198 netMm9,395 netMonDom5,198 netMonDom5,395 regions augustusGene,76 chainBosTau7,17 chainBosTau7,136 chainBosTau7,284 chainHg19,16 chainHg19,134 chainHg19,282 chainMm9,16 chainMm9,134 chainMm9,282 chainMonDom5,16 chainMonDom5,134 chainMonDom5,282 chainNetBosTau7,20 chainNetBosTau7,139 chainNetBosTau7,287 chainNetHg19,19 chainNetHg19,137 chainNetHg19,285 chainNetMm9,19 chainNetMm9,137 chainNetMm9,285 chainNetMonDom5,19 chainNetMonDom5,137 chainNetMonDom5,285 cpgIslandExt,41 cpgIslandExt,150 cpgIslandExt,182 cpgIslandExtUnmasked,44 cpgIslandExtUnmasked,153 cpgIslandExtUnmasked,185 cpgIslandSuper,41 cpgIslandSuper,150 cpgIslandSuper,182 microsat,14 netBosTau7,17 netBosTau7,136 netBosTau7,284 netHg19,16 netHg19,134 netHg19,282 netMm9,16 netMm9,134 netMm9,282 netMonDom5,16 netMonDom5,134 netMonDom5,282 numtS,147 numtSAssembled,149 numtSMitochondrion,151 numtSeq2012,150 simpleRepeat,39 tRNAs,499 regulation cpgIslandExt,13 cpgIslandExt,143 cpgIslandExtUnmasked,16 cpgIslandExtUnmasked,146 cpgIslandSuper,13 cpgIslandSuper,143 related augustusGene,242 relationship chainBosTau7,849 chainHg19,846 chainMm9,846 chainMonDom5,846 chainNetBosTau7,852 chainNetHg19,849 chainNetMm9,849 chainNetMonDom5,849 est,93 intronEst,174 netBosTau7,849 netHg19,846 netMm9,846 netMonDom5,846 relationships nscanGene,87 relative chainBosTau7,865 chainHg19,862 chainMm9,862 chainMonDom5,862 chainNetBosTau7,868 chainNetHg19,865 chainNetMm9,865 chainNetMonDom5,865 gap,59 gold,99 netBosTau7,865 netHg19,862 netMm9,862 netMonDom5,862 relatively cpgIslandExt,117 cpgIslandExtUnmasked,120 cpgIslandSuper,117 relevant est,157 intronEst,238 mrna,103 xenoMrna,178 remaining blastHg18KG,184 chainBosTau7,688 chainHg19,685 chainMm9,685 chainMonDom5,685 chainNetBosTau7,691 chainNetHg19,688 chainNetMm9,688 chainNetMonDom5,688 netBosTau7,688 netHg19,685 netMm9,685 netMonDom5,685 removal nscanGene,259 removed chainBosTau7,579 chainHg19,576 chainMm9,576 chainMonDom5,576 chainNetBosTau7,582 chainNetHg19,579 chainNetMm9,579 chainNetMonDom5,579 cpgIslandExt,331 cpgIslandExtUnmasked,334 cpgIslandSuper,331 netBosTau7,579 netHg19,576 netMm9,576 netMonDom5,576 rmsk,279 rendered tRNAs,346 repair numtS,56 numtSAssembled,58 numtSMitochondrion,60 numtSeq2012,59 repbase nestedRepeats,45 nestedRepeats,57 nestedRepeats,335 nestedRepeats,342 rmsk,81 rmsk,93 rmsk,114 rmsk,358 rmsk,365 repeat cpgIslandExt,181 cpgIslandExt,191 cpgIslandExtUnmasked,184 cpgIslandExtUnmasked,194 cpgIslandSuper,181 cpgIslandSuper,191 microsat,83 nestedRepeats,85 nestedRepeats,122 nestedRepeats,135 nestedRepeats,257 nestedRepeats,316 rmsk,168 rmsk,175 rmsk,227 rmsk,339 simpleRepeat,47 repeating rmsk,2 repeatmasker chainBosTau7,946 chainHg19,943 chainMm9,943 chainMonDom5,943 chainNetBosTau7,949 chainNetHg19,946 chainNetMm9,946 chainNetMonDom5,946 nestedRepeats,9 nestedRepeats,29 nestedRepeats,73 nestedRepeats,77 nestedRepeats,109 nestedRepeats,254 nestedRepeats,285 nestedRepeats,330 netBosTau7,946 netHg19,943 netMm9,943 netMonDom5,943 rmsk,1 rmsk,5 rmsk,19 rmsk,78 rmsk,292 rmsk,353 repeats bamAllNumtSSorted,10 chainBosTau7,938 chainHg19,935 chainMm9,935 chainMonDom5,935 chainNetBosTau7,941 chainNetHg19,938 chainNetMm9,938 chainNetMonDom5,938 microsat,6 microsat,9 microsat,35 microsat,58 microsat,63 microsat,86 microsat,93 microsat,106 microsat,117 nestedRepeats,6 nestedRepeats,13 nestedRepeats,22 nestedRepeats,37 nestedRepeats,49 nestedRepeats,95 nestedRepeats,366 nestedRepeats,374 nestedRepeats,401 netBosTau7,938 netHg19,935 netMm9,935 netMonDom5,935 numtS,6 numtSAssembled,8 numtSMitochondrion,10 numtSeq2012,9 rmsk,8 rmsk,27 rmsk,41 rmsk,68 rmsk,85 rmsk,152 rmsk,179 rmsk,183 rmsk,185 rmsk,187 rmsk,196 rmsk,303 rmsk,310 rmsk,389 rmsk,397 rmsk,424 simpleRepeat,2 simpleRepeat,5 simpleRepeat,10 simpleRepeat,17 simpleRepeat,20 simpleRepeat,24 simpleRepeat,34 simpleRepeat,77 repetitive nestedRepeats,351 numtS,300 numtSAssembled,302 numtSMitochondrion,304 numtSeq2012,303 rmsk,374 reported numtS,86 numtSAssembled,88 numtSMitochondrion,90 numtSeq2012,89 represent chainBosTau7,134 chainBosTau7,161 chainBosTau7,445 chainBosTau7,450 chainHg19,132 chainHg19,159 chainHg19,442 chainHg19,447 chainMm9,132 chainMm9,159 chainMm9,442 chainMm9,447 chainMonDom5,132 chainMonDom5,159 chainMonDom5,442 chainMonDom5,447 chainNetBosTau7,137 chainNetBosTau7,164 chainNetBosTau7,448 chainNetBosTau7,453 chainNetHg19,135 chainNetHg19,162 chainNetHg19,445 chainNetHg19,450 chainNetMm9,135 chainNetMm9,162 chainNetMm9,445 chainNetMm9,450 chainNetMonDom5,135 chainNetMonDom5,162 chainNetMonDom5,445 chainNetMonDom5,450 est,38 intronEst,50 netBosTau7,134 netBosTau7,161 netBosTau7,445 netBosTau7,450 netHg19,132 netHg19,159 netHg19,442 netHg19,447 netMm9,132 netMm9,159 netMm9,442 netMm9,447 netMonDom5,132 netMonDom5,159 netMonDom5,442 netMonDom5,447 tRNAs,80 represented gap,50 gap,123 gap,138 rmsk,49 representing gap,93 represents ctgPos2,10 required tRNAs,217 requiring intronEst,92 res chainBosTau7,1104 chainHg19,1101 chainMm9,1101 chainMonDom5,1101 chainNetBosTau7,1107 chainNetHg19,1104 chainNetMm9,1104 chainNetMonDom5,1104 ensGene,204 est,760 est,785 est,805 intronEst,844 intronEst,869 intronEst,889 microsat,127 mrna,477 mrna,502 mrna,522 netBosTau7,1104 netHg19,1101 netMm9,1101 netMonDom5,1101 nscanGene,215 nscanGene,264 simpleRepeat,87 tRNAs,383 tRNAs,406 tRNAs,459 tRNAs,502 xenoMrna,552 xenoMrna,577 xenoMrna,597 xenoRefGene,307 xenoRefGene,348 xenoRefGene,381 research nestedRepeats,54 rmsk,90 rest cpgIslandExt,518 cpgIslandExtUnmasked,521 cpgIslandSuper,518 ensGene,115 result chainBosTau7,174 chainHg19,172 chainMm9,172 chainMonDom5,172 chainNetBosTau7,177 chainNetHg19,175 chainNetMm9,175 chainNetMonDom5,175 cpgIslandExt,112 cpgIslandExtUnmasked,115 cpgIslandSuper,112 netBosTau7,174 netHg19,172 netMm9,172 netMonDom5,172 resulting chainBosTau7,598 chainHg19,595 chainMm9,595 chainMonDom5,595 chainNetBosTau7,601 chainNetHg19,598 chainNetMm9,598 chainNetMonDom5,598 netBosTau7,598 netHg19,595 netMm9,595 netMonDom5,595 retrieve est,580 intronEst,661 retroposons rmsk,173 returned numtS,187 numtS,202 numtS,334 numtSAssembled,189 numtSAssembled,204 numtSAssembled,336 numtSMitochondrion,191 numtSMitochondrion,206 numtSMitochondrion,338 numtSeq2012,190 numtSeq2012,205 numtSeq2012,337 reverse est,455 est,489 est,506 intronEst,536 intronEst,570 intronEst,587 review xenoRefGene,62 reviewed xenoRefGene,72 rhnumts numtS,559 numtSAssembled,561 numtSMitochondrion,563 numtSeq2012,562 ribosome tRNAs,157 richer nscanGene,78 rk nscanGene,189 rna est,101 est,449 intronEst,182 intronEst,530 rmsk,186 rmsk,189 tRNAs,4 tRNAs,375 tRNAs,398 tRNAs,452 xenoRefGene,28 xenoRefGene,239 xenoRefGene,285 rnas xenoRefGene,217 robert chainBosTau7,986 chainHg19,983 chainMm9,983 chainMonDom5,983 chainNetBosTau7,989 chainNetHg19,986 chainNetMm9,986 chainNetMonDom5,986 nestedRepeats,307 netBosTau7,986 netHg19,983 netMm9,983 netMonDom5,983 nscanGene,147 rmsk,330 tRNAs,351 rolling rmsk,201 romeo numtS,552 numtSAssembled,554 numtSMitochondrion,556 numtSeq2012,555 ronning nscanGene,195 ross chainBosTau7,935 chainHg19,932 chainMm9,932 chainMonDom5,932 chainNetBosTau7,938 chainNetHg19,935 chainNetMm9,935 chainNetMonDom5,935 netBosTau7,935 netHg19,932 netMm9,932 netMonDom5,932 rotated tRNAs,327 rough tRNAs,258 row nestedRepeats,179 rpnumts numtS,101 numtSAssembled,103 numtSMitochondrion,105 numtSeq2012,104 rpts nestedRepeats,2 rrna rmsk,191 run chainBosTau7,651 chainHg19,648 chainMm9,648 chainMonDom5,648 chainNetBosTau7,654 chainNetHg19,651 chainNetMm9,651 chainNetMonDom5,651 netBosTau7,651 netHg19,648 netMm9,648 netMonDom5,648 running numtS,406 numtSAssembled,408 numtSMitochondrion,410 numtSeq2012,409 rusch nscanGene,197 s augustusGene,104 augustusGene,221 augustusGene,319 blastHg18KG,131 chainBosTau7,1054 chainBosTau7,1071 chainBosTau7,1084 chainHg19,1051 chainHg19,1068 chainHg19,1081 chainMm9,1051 chainMm9,1068 chainMm9,1081 chainMonDom5,1051 chainMonDom5,1068 chainMonDom5,1081 chainNetBosTau7,1057 chainNetBosTau7,1074 chainNetBosTau7,1087 chainNetHg19,1054 chainNetHg19,1071 chainNetHg19,1084 chainNetMm9,1054 chainNetMm9,1071 chainNetMm9,1084 chainNetMonDom5,1054 chainNetMonDom5,1071 chainNetMonDom5,1084 cpgIslandExt,436 cpgIslandExt,440 cpgIslandExt,442 cpgIslandExt,443 cpgIslandExt,445 cpgIslandExt,447 cpgIslandExt,453 cpgIslandExt,455 cpgIslandExtUnmasked,439 cpgIslandExtUnmasked,443 cpgIslandExtUnmasked,445 cpgIslandExtUnmasked,446 cpgIslandExtUnmasked,448 cpgIslandExtUnmasked,450 cpgIslandExtUnmasked,456 cpgIslandExtUnmasked,458 cpgIslandSuper,436 cpgIslandSuper,440 cpgIslandSuper,442 cpgIslandSuper,443 cpgIslandSuper,445 cpgIslandSuper,447 cpgIslandSuper,453 cpgIslandSuper,455 nestedRepeats,286 netBosTau7,1054 netBosTau7,1071 netBosTau7,1084 netHg19,1051 netHg19,1068 netHg19,1081 netMm9,1051 netMm9,1068 netMm9,1081 netMonDom5,1051 netMonDom5,1068 netMonDom5,1081 nscanGene,119 numtS,549 numtSAssembled,551 numtSMitochondrion,553 numtSeq2012,552 rmsk,18 rmsk,293 tRNAs,479 s140-8 nscanGene,246 s15 numtS,541 numtSAssembled,543 numtSMitochondrion,545 numtSeq2012,544 saccharomyces augustusGene,223 saccone numtS,554 numtSAssembled,556 numtSMitochondrion,558 numtSeq2012,557 sam numtS,462 numtSAssembled,464 numtSMitochondrion,466 numtSeq2012,465 same chainBosTau7,524 chainBosTau7,539 chainHg19,521 chainHg19,536 chainMm9,521 chainMm9,536 chainMonDom5,521 chainMonDom5,536 chainNetBosTau7,527 chainNetBosTau7,542 chainNetHg19,524 chainNetHg19,539 chainNetMm9,524 chainNetMm9,539 chainNetMonDom5,524 chainNetMonDom5,539 nestedRepeats,143 netBosTau7,524 netBosTau7,539 netHg19,521 netHg19,536 netMm9,521 netMm9,536 netMonDom5,521 netMonDom5,536 tRNAs,247 xenoMrna,122 xenoMrna,127 sample augustusGene,133 sampling augustusGene,129 santa chainBosTau7,959 chainBosTau7,1004 chainHg19,956 chainHg19,1001 chainMm9,956 chainMm9,1001 chainMonDom5,956 chainMonDom5,1001 chainNetBosTau7,962 chainNetBosTau7,1007 chainNetHg19,959 chainNetHg19,1004 chainNetMm9,959 chainNetMm9,1004 chainNetMonDom5,959 chainNetMonDom5,1004 netBosTau7,959 netBosTau7,1004 netHg19,956 netHg19,1001 netMm9,956 netMm9,1001 netMonDom5,956 netMonDom5,1001 satellite rmsk,184 save cpgIslandExt,582 cpgIslandExtUnmasked,585 cpgIslandSuper,582 sayers est,755 intronEst,839 mrna,472 xenoMrna,547 scaffolds ctgPos2,1 ctgPos2,3 ctgPos2,16 schwartz chainBosTau7,926 chainBosTau7,1083 chainHg19,923 chainHg19,1080 chainMm9,923 chainMm9,1080 chainMonDom5,923 chainMonDom5,1080 chainNetBosTau7,929 chainNetBosTau7,1086 chainNetHg19,926 chainNetHg19,1083 chainNetMm9,926 chainNetMm9,1083 chainNetMonDom5,926 chainNetMonDom5,1083 netBosTau7,926 netBosTau7,1083 netHg19,923 netHg19,1080 netMm9,923 netMm9,1080 netMonDom5,923 netMonDom5,1080 sci chainBosTau7,1069 chainHg19,1066 chainMm9,1066 chainMonDom5,1066 chainNetBosTau7,1072 chainNetHg19,1069 chainNetMm9,1069 chainNetMonDom5,1069 netBosTau7,1069 netHg19,1066 netMm9,1066 netMonDom5,1066 sciences numtS,493 numtSAssembled,495 numtSMitochondrion,497 numtSeq2012,496 scientific numtS,113 numtSAssembled,115 numtSMitochondrion,117 numtSeq2012,116 scientists est,740 intronEst,824 mrna,457 xenoMrna,532 xenoRefGene,290 score chainBosTau7,680 chainHg19,677 chainMm9,677 chainMonDom5,677 chainNetBosTau7,683 chainNetHg19,680 chainNetMm9,680 chainNetMonDom5,680 nestedRepeats,188 nestedRepeats,216 nestedRepeats,223 netBosTau7,680 netHg19,677 netMm9,677 netMonDom5,677 numtS,152 numtSAssembled,154 numtSMitochondrion,156 numtSeq2012,155 tRNAs,116 tRNAs,121 tRNAs,259 scores tRNAs,163 tRNAs,178 tRNAs,198 scoring chainBosTau7,79 chainBosTau7,89 chainBosTau7,659 chainBosTau7,676 chainBosTau7,1031 chainHg19,77 chainHg19,87 chainHg19,656 chainHg19,673 chainHg19,1028 chainMm9,77 chainMm9,87 chainMm9,656 chainMm9,673 chainMm9,1028 chainMonDom5,77 chainMonDom5,87 chainMonDom5,656 chainMonDom5,673 chainMonDom5,1028 chainNetBosTau7,82 chainNetBosTau7,92 chainNetBosTau7,662 chainNetBosTau7,679 chainNetBosTau7,1034 chainNetHg19,80 chainNetHg19,90 chainNetHg19,659 chainNetHg19,676 chainNetHg19,1031 chainNetMm9,80 chainNetMm9,90 chainNetMm9,659 chainNetMm9,676 chainNetMm9,1031 chainNetMonDom5,80 chainNetMonDom5,90 chainNetMonDom5,659 chainNetMonDom5,676 chainNetMonDom5,1031 cpgIslandExt,238 cpgIslandExt,251 cpgIslandExtUnmasked,241 cpgIslandExtUnmasked,254 cpgIslandSuper,238 cpgIslandSuper,251 netBosTau7,79 netBosTau7,89 netBosTau7,659 netBosTau7,676 netBosTau7,1031 netHg19,77 netHg19,87 netHg19,656 netHg19,673 netHg19,1028 netMm9,77 netMm9,87 netMm9,656 netMm9,673 netMm9,1028 netMonDom5,77 netMonDom5,87 netMonDom5,656 netMonDom5,673 netMonDom5,1028 tRNAs,294 scott chainBosTau7,925 chainHg19,922 chainMm9,922 chainMonDom5,922 chainNetBosTau7,928 chainNetHg19,925 chainNetMm9,925 chainNetMonDom5,925 netBosTau7,925 netHg19,922 netMm9,922 netMonDom5,922 screens nestedRepeats,32 rmsk,22 scrna rmsk,193 search blastHg18KG,166 tRNAs,62 searching cpgIslandExt,230 cpgIslandExtUnmasked,233 cpgIslandSuper,230 second numtS,294 numtSAssembled,296 numtSMitochondrion,298 numtSeq2012,297 xenoMrna,91 secondary tRNAs,76 tRNAs,236 tRNAs,314 tRNAs,323 tRNAs,343 section ensGene,60 nestedRepeats,67 rmsk,103 sections chainBosTau7,806 chainHg19,803 chainMm9,803 chainMonDom5,803 chainNetBosTau7,809 chainNetHg19,806 chainNetMm9,806 chainNetMonDom5,806 netBosTau7,806 netHg19,803 netMm9,803 netMonDom5,803 see augustusGene,42 blastHg18KG,152 ctgPos2,51 ensGene,32 ensGene,168 gap,165 gold,48 gold,145 intronEst,122 microsat,101 nestedRepeats,296 nestedRepeats,370 rmsk,319 rmsk,393 simpleRepeat,63 xenoRefGene,207 segment cpgIslandExt,254 cpgIslandExt,299 cpgIslandExtUnmasked,257 cpgIslandExtUnmasked,302 cpgIslandSuper,254 cpgIslandSuper,299 segments cpgIslandExt,252 cpgIslandExtUnmasked,255 cpgIslandSuper,252 select xenoRefGene,160 selected est,293 est,309 est,362 intronEst,374 intronEst,390 intronEst,443 mrna,239 mrna,255 mrna,308 xenoMrna,314 xenoMrna,330 xenoMrna,383 selecting microsat,60 selective cpgIslandExt,122 cpgIslandExtUnmasked,125 cpgIslandSuper,122 semi-markov augustusGene,117 sep chainBosTau7,1074 chainHg19,1071 chainMm9,1071 chainMonDom5,1071 chainNetBosTau7,1077 chainNetHg19,1074 chainNetMm9,1074 chainNetMonDom5,1074 nestedRepeats,356 netBosTau7,1074 netHg19,1071 netMm9,1071 netMonDom5,1071 rmsk,379 separated est,264 intronEst,345 mrna,210 xenoMrna,285 sequence augustusGene,32 augustusGene,70 blastHg18KG,75 chainBosTau7,168 chainBosTau7,294 chainBosTau7,1034 chainHg19,166 chainHg19,292 chainHg19,1031 chainMm9,166 chainMm9,292 chainMm9,1031 chainMonDom5,166 chainMonDom5,292 chainMonDom5,1031 chainNetBosTau7,171 chainNetBosTau7,297 chainNetBosTau7,1037 chainNetHg19,169 chainNetHg19,295 chainNetHg19,1034 chainNetMm9,169 chainNetMm9,295 chainNetMm9,1034 chainNetMonDom5,169 chainNetMonDom5,295 chainNetMonDom5,1034 cpgIslandExt,232 cpgIslandExt,303 cpgIslandExt,325 cpgIslandExt,329 cpgIslandExt,397 cpgIslandExt,410 cpgIslandExtUnmasked,7 cpgIslandExtUnmasked,235 cpgIslandExtUnmasked,306 cpgIslandExtUnmasked,328 cpgIslandExtUnmasked,332 cpgIslandExtUnmasked,400 cpgIslandExtUnmasked,413 cpgIslandSuper,232 cpgIslandSuper,303 cpgIslandSuper,325 cpgIslandSuper,329 cpgIslandSuper,397 cpgIslandSuper,410 ctgPos2,40 ctgPos2,45 ctgPos2,50 est,18 est,89 est,398 est,407 est,581 est,718 est,730 est,737 gap,108 gap,153 gold,139 gold,144 intronEst,20 intronEst,73 intronEst,170 intronEst,479 intronEst,488 intronEst,662 intronEst,799 intronEst,814 intronEst,821 mrna,344 mrna,434 mrna,447 mrna,454 netBosTau7,168 netBosTau7,294 netBosTau7,1034 netHg19,166 netHg19,292 netHg19,1031 netMm9,166 netMm9,292 netMm9,1031 netMonDom5,166 netMonDom5,292 netMonDom5,1031 nscanGene,45 nscanGene,81 numtS,424 numtSAssembled,426 numtSMitochondrion,428 numtSeq2012,2 numtSeq2012,6 numtSeq2012,427 rmsk,48 rmsk,62 tRNAs,74 tRNAs,182 tRNAs,380 tRNAs,399 tRNAs,456 xenoMrna,77 xenoMrna,101 xenoMrna,109 xenoMrna,419 xenoMrna,509 xenoMrna,522 xenoMrna,529 xenoRefGene,274 xenoRefGene,286 xenoRefGene,367 xenoRefGene,372 sequences blastHg18KG,64 est,29 est,600 est,608 intronEst,41 intronEst,681 intronEst,689 microsat,26 microsat,124 nestedRepeats,34 nestedRepeats,42 nscanGene,74 nscanGene,92 numtS,14 numtS,22 numtS,174 numtS,179 numtS,597 numtSAssembled,16 numtSAssembled,24 numtSAssembled,176 numtSAssembled,181 numtSAssembled,599 numtSMitochondrion,18 numtSMitochondrion,26 numtSMitochondrion,178 numtSMitochondrion,183 numtSMitochondrion,601 numtSeq2012,17 numtSeq2012,25 numtSeq2012,177 numtSeq2012,182 numtSeq2012,600 rmsk,24 rmsk,32 simpleRepeat,84 tRNAs,428 xenoMrna,114 xenoRefGene,30 xenoRefGene,345 sequencing chainBosTau7,888 chainHg19,885 chainMm9,885 chainMonDom5,885 chainNetBosTau7,891 chainNetHg19,888 chainNetMm9,888 chainNetMonDom5,888 ctgPos2,6 gap,6 gc5Base,10 gold,7 gold,52 netBosTau7,888 netHg19,885 netMm9,885 netMonDom5,885 numtS,76 numtSAssembled,78 numtSMitochondrion,80 numtSeq2012,79 server ensGene,151 servers cpgIslandExt,539 cpgIslandExtUnmasked,542 cpgIslandSuper,539 ensGene,123 set blastHg18KG,146 tRNAs,71 sets augustusGene,158 settings cpgIslandExt,213 cpgIslandExtUnmasked,216 cpgIslandSuper,213 several est,423 intronEst,504 mrna,362 xenoMrna,437 sf blastHg18KG,154 sgsc gap,18 gold,19 shade nestedRepeats,194 shaded est,67 mrna,48 nestedRepeats,182 xenoMrna,53 shades nestedRepeats,202 shading intronEst,146 nestedRepeats,240 numtS,195 numtS,327 numtS,396 numtSAssembled,197 numtSAssembled,329 numtSAssembled,398 numtSMitochondrion,199 numtSMitochondrion,331 numtSMitochondrion,400 numtSeq2012,198 numtSeq2012,330 numtSeq2012,399 rmsk,208 rmsk,239 xenoRefGene,57 short rmsk,153 shotgun gold,45 should est,329 est,633 intronEst,410 intronEst,714 mrna,275 tRNAs,226 xenoMrna,350 show intronEst,29 intronEst,62 numtS,143 numtSAssembled,145 numtSMitochondrion,147 numtSeq2012,146 xenoRefGene,123 shown chainBosTau7,42 chainBosTau7,55 chainHg19,41 chainHg19,54 chainMm9,41 chainMm9,54 chainMonDom5,41 chainMonDom5,54 chainNetBosTau7,45 chainNetBosTau7,58 chainNetHg19,44 chainNetHg19,57 chainNetMm9,44 chainNetMm9,57 chainNetMonDom5,44 chainNetMonDom5,57 est,147 gold,90 intronEst,228 microsat,48 mrna,93 netBosTau7,42 netBosTau7,55 netHg19,41 netHg19,54 netMm9,41 netMm9,54 netMonDom5,41 netMonDom5,54 xenoMrna,168 shows augustusGene,15 augustusGene,108 chainBosTau7,16 chainBosTau7,63 chainBosTau7,265 chainHg19,15 chainHg19,62 chainHg19,263 chainMm9,15 chainMm9,62 chainMm9,263 chainMonDom5,15 chainMonDom5,62 chainMonDom5,263 chainNetBosTau7,19 chainNetBosTau7,66 chainNetBosTau7,268 chainNetHg19,18 chainNetHg19,65 chainNetHg19,266 chainNetMm9,18 chainNetMm9,65 chainNetMm9,266 chainNetMonDom5,18 chainNetMonDom5,65 chainNetMonDom5,266 est,13 gc5Base,16 intronEst,15 mrna,14 nestedRepeats,17 nestedRepeats,81 netBosTau7,16 netBosTau7,63 netBosTau7,265 netHg19,15 netHg19,62 netHg19,263 netMm9,15 netMm9,62 netMm9,263 netMonDom5,15 netMonDom5,62 netMonDom5,263 nscanGene,12 numtS,181 numtS,247 numtS,316 numtS,372 numtSAssembled,183 numtSAssembled,249 numtSAssembled,318 numtSAssembled,374 numtSMitochondrion,185 numtSMitochondrion,251 numtSMitochondrion,320 numtSMitochondrion,376 numtSeq2012,184 numtSeq2012,250 numtSeq2012,319 numtSeq2012,375 xenoRefGene,13 side est,596 gap,68 intronEst,677 signal augustusGene,48 augustusGene,63 significantly cpgIslandExt,156 cpgIslandExtUnmasked,159 cpgIslandSuper,156 signifies rmsk,258 signs intronEst,30 similar nestedRepeats,199 similarity numtS,201 numtS,333 numtSAssembled,203 numtSAssembled,335 numtSMitochondrion,205 numtSMitochondrion,337 numtSeq2012,204 numtSeq2012,336 simone numtS,480 numtS,516 numtS,520 numtS,582 numtSAssembled,482 numtSAssembled,518 numtSAssembled,522 numtSAssembled,584 numtSMitochondrion,484 numtSMitochondrion,520 numtSMitochondrion,524 numtSMitochondrion,586 numtSeq2012,483 numtSeq2012,519 numtSeq2012,523 numtSeq2012,585 simple microsat,57 microsat,85 rmsk,178 simpleRepeat,1 simpleRepeat,3 simpleRepeat,15 simultaneously chainBosTau7,101 chainHg19,99 chainMm9,99 chainMonDom5,99 chainNetBosTau7,104 chainNetHg19,102 chainNetMm9,102 chainNetMonDom5,102 netBosTau7,101 netHg19,99 netMm9,99 netMonDom5,99 since chainBosTau7,573 chainHg19,570 chainMm9,570 chainMonDom5,570 chainNetBosTau7,576 chainNetHg19,573 chainNetMm9,573 chainNetMonDom5,573 netBosTau7,573 netHg19,570 netMm9,570 netMonDom5,570 sine rmsk,157 sines tRNAs,150 single blastHg18KG,99 chainBosTau7,128 chainBosTau7,137 chainBosTau7,622 chainBosTau7,627 chainHg19,126 chainHg19,135 chainHg19,619 chainHg19,624 chainMm9,126 chainMm9,135 chainMm9,619 chainMm9,624 chainMonDom5,126 chainMonDom5,135 chainMonDom5,619 chainMonDom5,624 chainNetBosTau7,131 chainNetBosTau7,140 chainNetBosTau7,625 chainNetBosTau7,630 chainNetHg19,129 chainNetHg19,138 chainNetHg19,622 chainNetHg19,627 chainNetMm9,129 chainNetMm9,138 chainNetMm9,622 chainNetMm9,627 chainNetMonDom5,129 chainNetMonDom5,138 chainNetMonDom5,622 chainNetMonDom5,627 est,630 est,682 intronEst,711 intronEst,763 mrna,398 nestedRepeats,178 netBosTau7,128 netBosTau7,137 netBosTau7,622 netBosTau7,627 netHg19,126 netHg19,135 netHg19,619 netHg19,624 netMm9,126 netMm9,135 netMm9,619 netMm9,624 netMonDom5,126 netMonDom5,135 netMonDom5,619 netMonDom5,624 xenoMrna,472 xenoRefGene,238 single-lined chainBosTau7,208 chainHg19,206 chainMm9,206 chainMonDom5,206 chainNetBosTau7,211 chainNetHg19,209 chainNetMm9,209 chainNetMonDom5,209 netBosTau7,208 netHg19,206 netMm9,206 netMonDom5,206 single-read est,28 intronEst,40 sites augustusGene,54 augustusGene,59 cpgIslandExt,34 cpgIslandExtUnmasked,37 cpgIslandSuper,34 size blastHg18KG,93 skepticism est,638 intronEst,719 sm nscanGene,185 xenoRefGene,322 smallsize chainBosTau7,706 chainHg19,703 chainMm9,703 chainMonDom5,703 chainNetBosTau7,709 chainNetHg19,706 chainNetMm9,706 chainNetMonDom5,706 netBosTau7,706 netHg19,703 netMm9,703 netMonDom5,703 smit chainBosTau7,943 chainBosTau7,1087 chainHg19,940 chainHg19,1084 chainMm9,940 chainMm9,1084 chainMonDom5,940 chainMonDom5,1084 chainNetBosTau7,946 chainNetBosTau7,1090 chainNetHg19,943 chainNetHg19,1087 chainNetMm9,943 chainNetMm9,1087 chainNetMonDom5,943 chainNetMonDom5,1087 nestedRepeats,306 nestedRepeats,324 nestedRepeats,371 nestedRepeats,395 netBosTau7,943 netBosTau7,1087 netHg19,940 netHg19,1084 netMm9,940 netMm9,1084 netMonDom5,940 netMonDom5,1084 rmsk,17 rmsk,329 rmsk,347 rmsk,394 rmsk,418 smith nscanGene,188 snp numtS,366 numtS,371 numtSAssembled,368 numtSAssembled,373 numtSMitochondrion,370 numtSMitochondrion,375 numtSeq2012,369 numtSeq2012,374 snps bamAllNumtSSorted,2 bamAllNumtSSorted,7 numtS,384 numtSAssembled,386 numtSMitochondrion,388 numtSeq2012,387 snrna rmsk,192 so chainBosTau7,437 chainHg19,434 chainMm9,434 chainMonDom5,434 chainNetBosTau7,440 chainNetHg19,437 chainNetMm9,437 chainNetMonDom5,437 netBosTau7,437 netHg19,434 netMm9,434 netMonDom5,434 tRNAs,277 soft-masked rmsk,305 software nestedRepeats,255 nscanGene,21 some cpgIslandExt,134 cpgIslandExtUnmasked,137 cpgIslandSuper,134 est,155 est,552 est,568 est,670 intronEst,236 intronEst,633 intronEst,649 intronEst,751 mrna,101 nestedRepeats,207 rmsk,105 rmsk,268 xenoMrna,176 sometimes simpleRepeat,50 sort cpgIslandExt,483 cpgIslandExtUnmasked,486 cpgIslandSuper,483 sorted chainBosTau7,775 chainHg19,772 chainMm9,772 chainMonDom5,772 chainNetBosTau7,778 chainNetHg19,775 chainNetMm9,775 chainNetMonDom5,775 netBosTau7,775 netHg19,772 netMm9,772 netMonDom5,772 source cpgIslandExt,555 cpgIslandExtUnmasked,558 cpgIslandSuper,555 space est,267 intronEst,348 mrna,213 xenoMrna,288 spaces gold,88 span chainBosTau7,396 chainHg19,393 chainMm9,393 chainMonDom5,393 chainNetBosTau7,399 chainNetHg19,396 chainNetMm9,396 chainNetMonDom5,396 netBosTau7,396 netHg19,393 netMm9,393 netMonDom5,393 special nscanGene,132 specialized simpleRepeat,29 species augustusGene,166 augustusGene,173 augustusGene,181 augustusGene,186 augustusGene,200 augustusGene,229 augustusGene,244 chainBosTau7,118 chainBosTau7,171 chainBosTau7,190 chainBosTau7,894 chainHg19,116 chainHg19,169 chainHg19,188 chainHg19,891 chainMm9,116 chainMm9,169 chainMm9,188 chainMm9,891 chainMonDom5,116 chainMonDom5,169 chainMonDom5,188 chainMonDom5,891 chainNetBosTau7,121 chainNetBosTau7,174 chainNetBosTau7,193 chainNetBosTau7,897 chainNetHg19,119 chainNetHg19,172 chainNetHg19,191 chainNetHg19,894 chainNetMm9,119 chainNetMm9,172 chainNetMm9,191 chainNetMm9,894 chainNetMonDom5,119 chainNetMonDom5,172 chainNetMonDom5,191 chainNetMonDom5,894 netBosTau7,118 netBosTau7,171 netBosTau7,190 netBosTau7,894 netHg19,116 netHg19,169 netHg19,188 netHg19,891 netMm9,116 netMm9,169 netMm9,188 netMm9,891 netMonDom5,116 netMonDom5,169 netMonDom5,188 netMonDom5,891 species-specific augustusGene,156 specific est,194 intronEst,275 mrna,140 simpleRepeat,53 tRNAs,70 tRNAs,233 tRNAs,270 xenoMrna,215 specification ctgPos2,54 gap,168 gold,148 splice augustusGene,53 spliced intronEst,1 intronEst,8 intronEst,58 splicing augustusGene,123 intronEst,32 intronEst,93 split chainBosTau7,577 chainHg19,574 chainMm9,574 chainMonDom5,574 chainNetBosTau7,580 chainNetHg19,577 chainNetMm9,577 chainNetMonDom5,577 netBosTau7,577 netHg19,574 netMm9,574 netMonDom5,574 spontaneous cpgIslandExt,109 cpgIslandExtUnmasked,112 cpgIslandSuper,109 spreadsheet numtS,441 numtSAssembled,443 numtSMitochondrion,445 numtSeq2012,444 squish nestedRepeats,159 sr tRNAs,395 tRNAs,443 src cpgIslandExt,564 cpgIslandExtUnmasked,567 cpgIslandSuper,564 srprna rmsk,194 ss nscanGene,160 sscrofa9 ensGene,11 sscrofa9.2 ctgPos2,19 gap,19 gold,20 st nscanGene,32 nscanGene,126 stages cpgIslandExt,90 cpgIslandExtUnmasked,93 cpgIslandSuper,90 stanke augustusGene,103 augustusGene,251 augustusGene,284 augustusGene,286 augustusGene,316 start augustusGene,58 cpgIslandExt,33 cpgIslandExtUnmasked,36 cpgIslandSuper,33 est,560 intronEst,641 state chainBosTau7,920 chainBosTau7,1023 chainHg19,917 chainHg19,1020 chainMm9,917 chainMm9,1020 chainMonDom5,917 chainMonDom5,1020 chainNetBosTau7,923 chainNetBosTau7,1026 chainNetHg19,920 chainNetHg19,1023 chainNetMm9,920 chainNetMm9,1023 chainNetMonDom5,920 chainNetMonDom5,1023 netBosTau7,920 netBosTau7,1023 netHg19,917 netHg19,1020 netMm9,917 netMm9,1020 netMonDom5,917 netMonDom5,1020 statistical augustusGene,47 stdin cpgIslandExt,415 cpgIslandExt,420 cpgIslandExtUnmasked,418 cpgIslandExtUnmasked,423 cpgIslandSuper,415 cpgIslandSuper,420 stdout cpgIslandExt,413 cpgIslandExt,417 cpgIslandExtUnmasked,416 cpgIslandExtUnmasked,420 cpgIslandSuper,413 cpgIslandSuper,417 stefanie augustusGene,267 still tRNAs,142 storage chainBosTau7,977 chainHg19,974 chainMm9,974 chainMonDom5,974 chainNetBosTau7,980 chainNetHg19,977 chainNetMm9,977 chainNetMonDom5,977 netBosTau7,977 netHg19,974 netMm9,974 netMonDom5,974 strand chainBosTau7,248 chainHg19,246 chainMm9,246 chainMonDom5,246 chainNetBosTau7,251 chainNetHg19,249 chainNetMm9,249 chainNetMonDom5,249 cpgIslandExt,80 cpgIslandExt,84 cpgIslandExtUnmasked,83 cpgIslandExtUnmasked,87 cpgIslandSuper,80 cpgIslandSuper,84 est,74 intronEst,155 nestedRepeats,144 nestedRepeats,155 netBosTau7,248 netHg19,246 netMm9,246 netMonDom5,246 numtS,215 numtS,347 numtSAssembled,217 numtSAssembled,349 numtSMitochondrion,219 numtSMitochondrion,351 numtSeq2012,218 numtSeq2012,350 xenoMrna,60 stress numtS,39 numtSAssembled,41 numtSMitochondrion,43 numtSeq2012,42 structural tRNAs,184 structure augustusGene,113 nscanGene,19 nscanGene,239 tRNAs,77 tRNAs,237 tRNAs,315 structures augustusGene,164 tRNAs,324 tRNAs,344 studies tRNAs,272 studying chainBosTau7,289 chainHg19,287 chainMm9,287 chainMonDom5,287 chainNetBosTau7,292 chainNetHg19,290 chainNetMm9,290 chainNetMonDom5,290 netBosTau7,289 netHg19,287 netMm9,287 netMonDom5,287 submitted est,732 intronEst,816 mrna,449 xenoMrna,524 submodel augustusGene,331 subsections chainBosTau7,641 chainHg19,638 chainMm9,638 chainMonDom5,638 chainNetBosTau7,644 chainNetHg19,641 chainNetMm9,641 chainNetMonDom5,641 netBosTau7,641 netHg19,638 netMm9,638 netMonDom5,638 subset est,133 intronEst,214 microsat,54 mrna,79 xenoMrna,154 substantial chainBosTau7,167 chainHg19,165 chainMm9,165 chainMonDom5,165 chainNetBosTau7,170 chainNetHg19,168 chainNetMm9,168 chainNetMonDom5,168 netBosTau7,167 netHg19,165 netMm9,165 netMonDom5,165 substitution nscanGene,94 subtracks chainBosTau7,30 chainBosTau7,37 chainHg19,29 chainHg19,36 chainMm9,29 chainMm9,36 chainMonDom5,29 chainMonDom5,36 chainNetBosTau7,33 chainNetBosTau7,40 chainNetHg19,32 chainNetHg19,39 chainNetMm9,32 chainNetMm9,39 chainNetMonDom5,32 chainNetMonDom5,39 netBosTau7,30 netBosTau7,37 netHg19,29 netHg19,36 netMm9,29 netMm9,36 netMonDom5,29 netMonDom5,36 numtS,239 numtSAssembled,241 numtSMitochondrion,243 numtSeq2012,242 successful est,590 intronEst,671 such chainBosTau7,855 chainHg19,852 chainMm9,852 chainMonDom5,852 chainNetBosTau7,858 chainNetHg19,855 chainNetMm9,855 chainNetMonDom5,855 cpgIslandExt,65 cpgIslandExtUnmasked,68 cpgIslandSuper,65 netBosTau7,855 netHg19,852 netMm9,852 netMonDom5,852 suggests numtS,30 numtSAssembled,32 numtSMitochondrion,34 numtSeq2012,33 suppl augustusGene,336 nscanGene,244 numtS,539 numtSAssembled,541 numtSMitochondrion,543 numtSeq2012,542 supported gap,73 susscr2 ensGene,7 ensGene,87 numtS,165 numtS,393 numtS,417 numtSAssembled,167 numtSAssembled,395 numtSAssembled,419 numtSMitochondrion,169 numtSMitochondrion,397 numtSMitochondrion,421 numtSeq2012,168 numtSeq2012,396 numtSeq2012,420 symp chainBosTau7,1037 chainHg19,1034 chainMm9,1034 chainMonDom5,1034 chainNetBosTau7,1040 chainNetHg19,1037 chainNetMm9,1037 chainNetMonDom5,1037 netBosTau7,1037 netHg19,1034 netMm9,1034 netMonDom5,1034 syn chainBosTau7,520 chainHg19,517 chainMm9,517 chainMonDom5,517 chainNetBosTau7,523 chainNetHg19,520 chainNetMm9,520 chainNetMonDom5,520 netBosTau7,520 netHg19,517 netMm9,517 netMonDom5,517 syntenic chainBosTau7,283 chainBosTau7,862 chainHg19,281 chainHg19,859 chainMm9,281 chainMm9,859 chainMonDom5,281 chainMonDom5,859 chainNetBosTau7,286 chainNetBosTau7,865 chainNetHg19,284 chainNetHg19,862 chainNetMm9,284 chainNetMm9,862 chainNetMonDom5,284 chainNetMonDom5,862 netBosTau7,283 netBosTau7,862 netHg19,281 netHg19,859 netMm9,281 netMm9,859 netMonDom5,281 netMonDom5,859 syntenically augustusGene,297 synteny chainBosTau7,33 chainHg19,32 chainMm9,32 chainMonDom5,32 chainNetBosTau7,36 chainNetHg19,35 chainNetMm9,35 chainNetMonDom5,35 netBosTau7,33 netHg19,32 netMm9,32 netMonDom5,32 synthesized cpgIslandExt,78 cpgIslandExtUnmasked,81 cpgIslandSuper,78 system chainBosTau7,80 chainHg19,78 chainMm9,78 chainMonDom5,78 chainNetBosTau7,83 chainNetHg19,81 chainNetMm9,81 chainNetMonDom5,81 netBosTau7,80 netHg19,78 netMm9,78 netMonDom5,78 systems chainBosTau7,90 chainHg19,88 chainMm9,88 chainMonDom5,88 chainNetBosTau7,93 chainNetHg19,91 chainNetMm9,91 chainNetMonDom5,91 netBosTau7,90 netHg19,88 netMm9,88 netMonDom5,88 t cpgIslandExt,437 cpgIslandExt,439 cpgIslandExt,441 cpgIslandExt,444 cpgIslandExt,446 cpgIslandExt,448 cpgIslandExt,450 cpgIslandExt,452 cpgIslandExt,454 cpgIslandExtUnmasked,440 cpgIslandExtUnmasked,442 cpgIslandExtUnmasked,444 cpgIslandExtUnmasked,447 cpgIslandExtUnmasked,449 cpgIslandExtUnmasked,451 cpgIslandExtUnmasked,453 cpgIslandExtUnmasked,455 cpgIslandExtUnmasked,457 cpgIslandSuper,437 cpgIslandSuper,439 cpgIslandSuper,441 cpgIslandSuper,444 cpgIslandSuper,446 cpgIslandSuper,448 cpgIslandSuper,450 cpgIslandSuper,452 cpgIslandSuper,454 ensGene,176 ensGene,188 ensGene,194 xenoRefGene,362 t-123-31-11491 chainBosTau7,674 chainHg19,671 chainMm9,671 chainMonDom5,671 chainNetBosTau7,677 chainNetHg19,674 chainNetMm9,674 chainNetMonDom5,674 netBosTau7,674 netHg19,671 netMm9,671 netMonDom5,671 table augustusGene,225 cpgIslandExt,521 cpgIslandExtUnmasked,524 cpgIslandSuper,521 ensGene,73 est,219 est,222 est,241 intronEst,300 intronEst,303 intronEst,322 mrna,165 mrna,168 mrna,187 xenoMrna,240 xenoMrna,243 xenoMrna,262 tables cpgIslandExt,511 cpgIslandExt,529 cpgIslandExtUnmasked,514 cpgIslandExtUnmasked,532 cpgIslandSuper,511 cpgIslandSuper,529 tablesize chainBosTau7,704 chainHg19,701 chainMm9,701 chainMonDom5,701 chainNetBosTau7,707 chainNetHg19,704 chainNetMm9,704 chainNetMonDom5,704 netBosTau7,704 netHg19,701 netMm9,701 netMonDom5,701 tags est,19 intronEst,21 tail est,501 intronEst,582 taken est,472 intronEst,553 xenoRefGene,24 tandem microsat,92 microsat,105 microsat,116 simpleRepeat,4 simpleRepeat,16 simpleRepeat,23 simpleRepeat,76 target nscanGene,43 target-informant nscanGene,63 task est,161 intronEst,242 mrna,107 xenoMrna,182 tatusova xenoRefGene,361 tblastn blastHg18KG,8 blastHg18KG,17 blastHg18KG,78 blastHg18KG,138 techniques est,566 intronEst,647 temperature augustusGene,141 ten rmsk,148 tend cpgIslandExt,68 cpgIslandExt,102 cpgIslandExtUnmasked,71 cpgIslandExtUnmasked,105 cpgIslandSuper,68 cpgIslandSuper,102 microsat,37 tenney nscanGene,141 term est,168 intronEst,249 mrna,114 xenoMrna,189 terminal rmsk,167 terms est,212 est,258 intronEst,293 intronEst,339 mrna,158 mrna,204 xenoMrna,233 xenoMrna,279 text est,175 est,215 est,255 intronEst,256 intronEst,296 intronEst,336 mrna,121 mrna,161 mrna,201 xenoMrna,196 xenoMrna,236 xenoMrna,276 tgap chainBosTau7,732 chainHg19,729 chainMm9,729 chainMonDom5,729 chainNetBosTau7,735 chainNetHg19,732 chainNetMm9,732 chainNetMonDom5,732 netBosTau7,732 netHg19,729 netMm9,729 netMonDom5,729 than blastHg18KG,106 chainBosTau7,85 chainBosTau7,509 chainHg19,83 chainHg19,506 chainMm9,83 chainMm9,506 chainMonDom5,83 chainMonDom5,506 chainNetBosTau7,88 chainNetBosTau7,512 chainNetHg19,86 chainNetHg19,509 chainNetMm9,86 chainNetMm9,509 chainNetMonDom5,86 chainNetMonDom5,509 cpgIslandExt,159 cpgIslandExt,270 cpgIslandExt,275 cpgIslandExtUnmasked,162 cpgIslandExtUnmasked,273 cpgIslandExtUnmasked,278 cpgIslandSuper,159 cpgIslandSuper,270 cpgIslandSuper,275 est,280 est,573 intronEst,361 intronEst,654 mrna,226 nestedRepeats,213 nestedRepeats,271 netBosTau7,85 netBosTau7,509 netHg19,83 netHg19,506 netMm9,83 netMm9,506 netMonDom5,83 netMonDom5,506 numtS,277 numtSAssembled,279 numtSMitochondrion,281 numtSeq2012,280 tRNAs,92 xenoMrna,27 xenoMrna,301 xenoRefGene,22 xenoRefGene,232 thank ensGene,157 thanks augustusGene,248 nestedRepeats,303 nscanGene,115 nscanGene,133 rmsk,326 that blastHg18KG,65 blastHg18KG,116 chainBosTau7,21 chainBosTau7,46 chainBosTau7,81 chainBosTau7,141 chainBosTau7,165 chainBosTau7,368 chainBosTau7,395 chainBosTau7,417 chainBosTau7,569 chainBosTau7,825 chainBosTau7,836 chainHg19,20 chainHg19,45 chainHg19,79 chainHg19,139 chainHg19,163 chainHg19,365 chainHg19,392 chainHg19,414 chainHg19,566 chainHg19,822 chainHg19,833 chainMm9,20 chainMm9,45 chainMm9,79 chainMm9,139 chainMm9,163 chainMm9,365 chainMm9,392 chainMm9,414 chainMm9,566 chainMm9,822 chainMm9,833 chainMonDom5,20 chainMonDom5,45 chainMonDom5,79 chainMonDom5,139 chainMonDom5,163 chainMonDom5,365 chainMonDom5,392 chainMonDom5,414 chainMonDom5,566 chainMonDom5,822 chainMonDom5,833 chainNetBosTau7,24 chainNetBosTau7,49 chainNetBosTau7,84 chainNetBosTau7,144 chainNetBosTau7,168 chainNetBosTau7,371 chainNetBosTau7,398 chainNetBosTau7,420 chainNetBosTau7,572 chainNetBosTau7,828 chainNetBosTau7,839 chainNetHg19,23 chainNetHg19,48 chainNetHg19,82 chainNetHg19,142 chainNetHg19,166 chainNetHg19,368 chainNetHg19,395 chainNetHg19,417 chainNetHg19,569 chainNetHg19,825 chainNetHg19,836 chainNetMm9,23 chainNetMm9,48 chainNetMm9,82 chainNetMm9,142 chainNetMm9,166 chainNetMm9,368 chainNetMm9,395 chainNetMm9,417 chainNetMm9,569 chainNetMm9,825 chainNetMm9,836 chainNetMonDom5,23 chainNetMonDom5,48 chainNetMonDom5,82 chainNetMonDom5,142 chainNetMonDom5,166 chainNetMonDom5,368 chainNetMonDom5,395 chainNetMonDom5,417 chainNetMonDom5,569 chainNetMonDom5,825 chainNetMonDom5,836 cpgIslandExt,114 cpgIslandExt,178 cpgIslandExtUnmasked,117 cpgIslandExtUnmasked,181 cpgIslandSuper,114 cpgIslandSuper,178 est,36 est,63 est,117 est,224 est,248 est,296 est,311 est,328 est,352 est,370 est,387 est,402 est,655 est,676 gap,114 gap,154 gold,63 intronEst,5 intronEst,28 intronEst,48 intronEst,198 intronEst,305 intronEst,329 intronEst,377 intronEst,392 intronEst,409 intronEst,433 intronEst,451 intronEst,468 intronEst,483 intronEst,736 intronEst,757 microsat,15 mrna,44 mrna,63 mrna,170 mrna,194 mrna,242 mrna,257 mrna,274 mrna,298 mrna,316 mrna,333 nestedRepeats,265 nestedRepeats,273 netBosTau7,21 netBosTau7,46 netBosTau7,81 netBosTau7,141 netBosTau7,165 netBosTau7,368 netBosTau7,395 netBosTau7,417 netBosTau7,569 netBosTau7,825 netBosTau7,836 netHg19,20 netHg19,45 netHg19,79 netHg19,139 netHg19,163 netHg19,365 netHg19,392 netHg19,414 netHg19,566 netHg19,822 netHg19,833 netMm9,20 netMm9,45 netMm9,79 netMm9,139 netMm9,163 netMm9,365 netMm9,392 netMm9,414 netMm9,566 netMm9,822 netMm9,833 netMonDom5,20 netMonDom5,45 netMonDom5,79 netMonDom5,139 netMonDom5,163 netMonDom5,365 netMonDom5,392 netMonDom5,414 netMonDom5,566 netMonDom5,822 netMonDom5,833 numtS,31 numtSAssembled,33 numtSMitochondrion,35 numtSeq2012,34 rmsk,42 rmsk,259 tRNAs,29 tRNAs,79 tRNAs,186 tRNAs,284 tRNAs,296 xenoMrna,49 xenoMrna,138 xenoMrna,245 xenoMrna,269 xenoMrna,317 xenoMrna,332 xenoMrna,349 xenoMrna,373 xenoMrna,391 xenoMrna,408 xenoRefGene,146 the augustusGene,20 augustusGene,25 augustusGene,30 augustusGene,38 augustusGene,61 augustusGene,69 augustusGene,81 augustusGene,109 augustusGene,143 augustusGene,165 augustusGene,172 augustusGene,177 augustusGene,185 augustusGene,240 augustusGene,250 augustusGene,255 augustusGene,258 augustusGene,261 augustusGene,272 augustusGene,275 blastHg18KG,20 blastHg18KG,23 blastHg18KG,30 blastHg18KG,37 blastHg18KG,41 blastHg18KG,49 blastHg18KG,53 blastHg18KG,61 blastHg18KG,73 blastHg18KG,77 blastHg18KG,81 blastHg18KG,98 blastHg18KG,109 blastHg18KG,121 blastHg18KG,129 blastHg18KG,142 blastHg18KG,183 chainBosTau7,19 chainBosTau7,38 chainBosTau7,60 chainBosTau7,73 chainBosTau7,119 chainBosTau7,132 chainBosTau7,149 chainBosTau7,156 chainBosTau7,202 chainBosTau7,205 chainBosTau7,231 chainBosTau7,241 chainBosTau7,246 chainBosTau7,254 chainBosTau7,262 chainBosTau7,266 chainBosTau7,275 chainBosTau7,292 chainBosTau7,301 chainBosTau7,316 chainBosTau7,331 chainBosTau7,337 chainBosTau7,340 chainBosTau7,355 chainBosTau7,361 chainBosTau7,365 chainBosTau7,385 chainBosTau7,391 chainBosTau7,405 chainBosTau7,423 chainBosTau7,440 chainBosTau7,443 chainBosTau7,448 chainBosTau7,461 chainBosTau7,474 chainBosTau7,476 chainBosTau7,483 chainBosTau7,486 chainBosTau7,493 chainBosTau7,499 chainBosTau7,512 chainBosTau7,523 chainBosTau7,527 chainBosTau7,530 chainBosTau7,538 chainBosTau7,542 chainBosTau7,548 chainBosTau7,559 chainBosTau7,562 chainBosTau7,574 chainBosTau7,581 chainBosTau7,583 chainBosTau7,591 chainBosTau7,597 chainBosTau7,606 chainBosTau7,609 chainBosTau7,639 chainBosTau7,644 chainBosTau7,653 chainBosTau7,657 chainBosTau7,664 chainBosTau7,687 chainBosTau7,695 chainBosTau7,765 chainBosTau7,769 chainBosTau7,777 chainBosTau7,781 chainBosTau7,785 chainBosTau7,793 chainBosTau7,838 chainBosTau7,848 chainBosTau7,867 chainBosTau7,870 chainBosTau7,882 chainBosTau7,906 chainBosTau7,948 chainBosTau7,954 chainBosTau7,972 chainBosTau7,979 chainBosTau7,991 chainBosTau7,1000 chainBosTau7,1021 chainBosTau7,1061 chainHg19,18 chainHg19,37 chainHg19,59 chainHg19,71 chainHg19,117 chainHg19,130 chainHg19,147 chainHg19,154 chainHg19,200 chainHg19,203 chainHg19,229 chainHg19,239 chainHg19,244 chainHg19,252 chainHg19,260 chainHg19,264 chainHg19,273 chainHg19,290 chainHg19,299 chainHg19,313 chainHg19,328 chainHg19,334 chainHg19,337 chainHg19,352 chainHg19,358 chainHg19,362 chainHg19,382 chainHg19,388 chainHg19,402 chainHg19,420 chainHg19,437 chainHg19,440 chainHg19,445 chainHg19,458 chainHg19,471 chainHg19,473 chainHg19,480 chainHg19,483 chainHg19,490 chainHg19,496 chainHg19,509 chainHg19,520 chainHg19,524 chainHg19,527 chainHg19,535 chainHg19,539 chainHg19,545 chainHg19,556 chainHg19,559 chainHg19,571 chainHg19,578 chainHg19,580 chainHg19,588 chainHg19,594 chainHg19,603 chainHg19,606 chainHg19,636 chainHg19,641 chainHg19,650 chainHg19,654 chainHg19,661 chainHg19,684 chainHg19,692 chainHg19,762 chainHg19,766 chainHg19,774 chainHg19,778 chainHg19,782 chainHg19,790 chainHg19,835 chainHg19,845 chainHg19,864 chainHg19,867 chainHg19,879 chainHg19,903 chainHg19,945 chainHg19,951 chainHg19,969 chainHg19,976 chainHg19,988 chainHg19,997 chainHg19,1018 chainHg19,1058 chainMm9,18 chainMm9,37 chainMm9,59 chainMm9,71 chainMm9,117 chainMm9,130 chainMm9,147 chainMm9,154 chainMm9,200 chainMm9,203 chainMm9,229 chainMm9,239 chainMm9,244 chainMm9,252 chainMm9,260 chainMm9,264 chainMm9,273 chainMm9,290 chainMm9,299 chainMm9,313 chainMm9,328 chainMm9,334 chainMm9,337 chainMm9,352 chainMm9,358 chainMm9,362 chainMm9,382 chainMm9,388 chainMm9,402 chainMm9,420 chainMm9,437 chainMm9,440 chainMm9,445 chainMm9,458 chainMm9,471 chainMm9,473 chainMm9,480 chainMm9,483 chainMm9,490 chainMm9,496 chainMm9,509 chainMm9,520 chainMm9,524 chainMm9,527 chainMm9,535 chainMm9,539 chainMm9,545 chainMm9,556 chainMm9,559 chainMm9,571 chainMm9,578 chainMm9,580 chainMm9,588 chainMm9,594 chainMm9,603 chainMm9,606 chainMm9,636 chainMm9,641 chainMm9,650 chainMm9,654 chainMm9,661 chainMm9,684 chainMm9,692 chainMm9,762 chainMm9,766 chainMm9,774 chainMm9,778 chainMm9,782 chainMm9,790 chainMm9,835 chainMm9,845 chainMm9,864 chainMm9,867 chainMm9,879 chainMm9,903 chainMm9,945 chainMm9,951 chainMm9,969 chainMm9,976 chainMm9,988 chainMm9,997 chainMm9,1018 chainMm9,1058 chainMonDom5,18 chainMonDom5,37 chainMonDom5,59 chainMonDom5,71 chainMonDom5,117 chainMonDom5,130 chainMonDom5,147 chainMonDom5,154 chainMonDom5,200 chainMonDom5,203 chainMonDom5,229 chainMonDom5,239 chainMonDom5,244 chainMonDom5,252 chainMonDom5,260 chainMonDom5,264 chainMonDom5,273 chainMonDom5,290 chainMonDom5,299 chainMonDom5,313 chainMonDom5,328 chainMonDom5,334 chainMonDom5,337 chainMonDom5,352 chainMonDom5,358 chainMonDom5,362 chainMonDom5,382 chainMonDom5,388 chainMonDom5,402 chainMonDom5,420 chainMonDom5,437 chainMonDom5,440 chainMonDom5,445 chainMonDom5,458 chainMonDom5,471 chainMonDom5,473 chainMonDom5,480 chainMonDom5,483 chainMonDom5,490 chainMonDom5,496 chainMonDom5,509 chainMonDom5,520 chainMonDom5,524 chainMonDom5,527 chainMonDom5,535 chainMonDom5,539 chainMonDom5,545 chainMonDom5,556 chainMonDom5,559 chainMonDom5,571 chainMonDom5,578 chainMonDom5,580 chainMonDom5,588 chainMonDom5,594 chainMonDom5,603 chainMonDom5,606 chainMonDom5,636 chainMonDom5,641 chainMonDom5,650 chainMonDom5,654 chainMonDom5,661 chainMonDom5,684 chainMonDom5,692 chainMonDom5,762 chainMonDom5,766 chainMonDom5,774 chainMonDom5,778 chainMonDom5,782 chainMonDom5,790 chainMonDom5,835 chainMonDom5,845 chainMonDom5,864 chainMonDom5,867 chainMonDom5,879 chainMonDom5,903 chainMonDom5,945 chainMonDom5,951 chainMonDom5,969 chainMonDom5,976 chainMonDom5,988 chainMonDom5,997 chainMonDom5,1018 chainMonDom5,1058 chainNetBosTau7,22 chainNetBosTau7,41 chainNetBosTau7,63 chainNetBosTau7,76 chainNetBosTau7,122 chainNetBosTau7,135 chainNetBosTau7,152 chainNetBosTau7,159 chainNetBosTau7,205 chainNetBosTau7,208 chainNetBosTau7,234 chainNetBosTau7,244 chainNetBosTau7,249 chainNetBosTau7,257 chainNetBosTau7,265 chainNetBosTau7,269 chainNetBosTau7,278 chainNetBosTau7,295 chainNetBosTau7,304 chainNetBosTau7,319 chainNetBosTau7,334 chainNetBosTau7,340 chainNetBosTau7,343 chainNetBosTau7,358 chainNetBosTau7,364 chainNetBosTau7,368 chainNetBosTau7,388 chainNetBosTau7,394 chainNetBosTau7,408 chainNetBosTau7,426 chainNetBosTau7,443 chainNetBosTau7,446 chainNetBosTau7,451 chainNetBosTau7,464 chainNetBosTau7,477 chainNetBosTau7,479 chainNetBosTau7,486 chainNetBosTau7,489 chainNetBosTau7,496 chainNetBosTau7,502 chainNetBosTau7,515 chainNetBosTau7,526 chainNetBosTau7,530 chainNetBosTau7,533 chainNetBosTau7,541 chainNetBosTau7,545 chainNetBosTau7,551 chainNetBosTau7,562 chainNetBosTau7,565 chainNetBosTau7,577 chainNetBosTau7,584 chainNetBosTau7,586 chainNetBosTau7,594 chainNetBosTau7,600 chainNetBosTau7,609 chainNetBosTau7,612 chainNetBosTau7,642 chainNetBosTau7,647 chainNetBosTau7,656 chainNetBosTau7,660 chainNetBosTau7,667 chainNetBosTau7,690 chainNetBosTau7,698 chainNetBosTau7,768 chainNetBosTau7,772 chainNetBosTau7,780 chainNetBosTau7,784 chainNetBosTau7,788 chainNetBosTau7,796 chainNetBosTau7,841 chainNetBosTau7,851 chainNetBosTau7,870 chainNetBosTau7,873 chainNetBosTau7,885 chainNetBosTau7,909 chainNetBosTau7,951 chainNetBosTau7,957 chainNetBosTau7,975 chainNetBosTau7,982 chainNetBosTau7,994 chainNetBosTau7,1003 chainNetBosTau7,1024 chainNetBosTau7,1064 chainNetHg19,21 chainNetHg19,40 chainNetHg19,62 chainNetHg19,74 chainNetHg19,120 chainNetHg19,133 chainNetHg19,150 chainNetHg19,157 chainNetHg19,203 chainNetHg19,206 chainNetHg19,232 chainNetHg19,242 chainNetHg19,247 chainNetHg19,255 chainNetHg19,263 chainNetHg19,267 chainNetHg19,276 chainNetHg19,293 chainNetHg19,302 chainNetHg19,316 chainNetHg19,331 chainNetHg19,337 chainNetHg19,340 chainNetHg19,355 chainNetHg19,361 chainNetHg19,365 chainNetHg19,385 chainNetHg19,391 chainNetHg19,405 chainNetHg19,423 chainNetHg19,440 chainNetHg19,443 chainNetHg19,448 chainNetHg19,461 chainNetHg19,474 chainNetHg19,476 chainNetHg19,483 chainNetHg19,486 chainNetHg19,493 chainNetHg19,499 chainNetHg19,512 chainNetHg19,523 chainNetHg19,527 chainNetHg19,530 chainNetHg19,538 chainNetHg19,542 chainNetHg19,548 chainNetHg19,559 chainNetHg19,562 chainNetHg19,574 chainNetHg19,581 chainNetHg19,583 chainNetHg19,591 chainNetHg19,597 chainNetHg19,606 chainNetHg19,609 chainNetHg19,639 chainNetHg19,644 chainNetHg19,653 chainNetHg19,657 chainNetHg19,664 chainNetHg19,687 chainNetHg19,695 chainNetHg19,765 chainNetHg19,769 chainNetHg19,777 chainNetHg19,781 chainNetHg19,785 chainNetHg19,793 chainNetHg19,838 chainNetHg19,848 chainNetHg19,867 chainNetHg19,870 chainNetHg19,882 chainNetHg19,906 chainNetHg19,948 chainNetHg19,954 chainNetHg19,972 chainNetHg19,979 chainNetHg19,991 chainNetHg19,1000 chainNetHg19,1021 chainNetHg19,1061 chainNetMm9,21 chainNetMm9,40 chainNetMm9,62 chainNetMm9,74 chainNetMm9,120 chainNetMm9,133 chainNetMm9,150 chainNetMm9,157 chainNetMm9,203 chainNetMm9,206 chainNetMm9,232 chainNetMm9,242 chainNetMm9,247 chainNetMm9,255 chainNetMm9,263 chainNetMm9,267 chainNetMm9,276 chainNetMm9,293 chainNetMm9,302 chainNetMm9,316 chainNetMm9,331 chainNetMm9,337 chainNetMm9,340 chainNetMm9,355 chainNetMm9,361 chainNetMm9,365 chainNetMm9,385 chainNetMm9,391 chainNetMm9,405 chainNetMm9,423 chainNetMm9,440 chainNetMm9,443 chainNetMm9,448 chainNetMm9,461 chainNetMm9,474 chainNetMm9,476 chainNetMm9,483 chainNetMm9,486 chainNetMm9,493 chainNetMm9,499 chainNetMm9,512 chainNetMm9,523 chainNetMm9,527 chainNetMm9,530 chainNetMm9,538 chainNetMm9,542 chainNetMm9,548 chainNetMm9,559 chainNetMm9,562 chainNetMm9,574 chainNetMm9,581 chainNetMm9,583 chainNetMm9,591 chainNetMm9,597 chainNetMm9,606 chainNetMm9,609 chainNetMm9,639 chainNetMm9,644 chainNetMm9,653 chainNetMm9,657 chainNetMm9,664 chainNetMm9,687 chainNetMm9,695 chainNetMm9,765 chainNetMm9,769 chainNetMm9,777 chainNetMm9,781 chainNetMm9,785 chainNetMm9,793 chainNetMm9,838 chainNetMm9,848 chainNetMm9,867 chainNetMm9,870 chainNetMm9,882 chainNetMm9,906 chainNetMm9,948 chainNetMm9,954 chainNetMm9,972 chainNetMm9,979 chainNetMm9,991 chainNetMm9,1000 chainNetMm9,1021 chainNetMm9,1061 chainNetMonDom5,21 chainNetMonDom5,40 chainNetMonDom5,62 chainNetMonDom5,74 chainNetMonDom5,120 chainNetMonDom5,133 chainNetMonDom5,150 chainNetMonDom5,157 chainNetMonDom5,203 chainNetMonDom5,206 chainNetMonDom5,232 chainNetMonDom5,242 chainNetMonDom5,247 chainNetMonDom5,255 chainNetMonDom5,263 chainNetMonDom5,267 chainNetMonDom5,276 chainNetMonDom5,293 chainNetMonDom5,302 chainNetMonDom5,316 chainNetMonDom5,331 chainNetMonDom5,337 chainNetMonDom5,340 chainNetMonDom5,355 chainNetMonDom5,361 chainNetMonDom5,365 chainNetMonDom5,385 chainNetMonDom5,391 chainNetMonDom5,405 chainNetMonDom5,423 chainNetMonDom5,440 chainNetMonDom5,443 chainNetMonDom5,448 chainNetMonDom5,461 chainNetMonDom5,474 chainNetMonDom5,476 chainNetMonDom5,483 chainNetMonDom5,486 chainNetMonDom5,493 chainNetMonDom5,499 chainNetMonDom5,512 chainNetMonDom5,523 chainNetMonDom5,527 chainNetMonDom5,530 chainNetMonDom5,538 chainNetMonDom5,542 chainNetMonDom5,548 chainNetMonDom5,559 chainNetMonDom5,562 chainNetMonDom5,574 chainNetMonDom5,581 chainNetMonDom5,583 chainNetMonDom5,591 chainNetMonDom5,597 chainNetMonDom5,606 chainNetMonDom5,609 chainNetMonDom5,639 chainNetMonDom5,644 chainNetMonDom5,653 chainNetMonDom5,657 chainNetMonDom5,664 chainNetMonDom5,687 chainNetMonDom5,695 chainNetMonDom5,765 chainNetMonDom5,769 chainNetMonDom5,777 chainNetMonDom5,781 chainNetMonDom5,785 chainNetMonDom5,793 chainNetMonDom5,838 chainNetMonDom5,848 chainNetMonDom5,867 chainNetMonDom5,870 chainNetMonDom5,882 chainNetMonDom5,906 chainNetMonDom5,948 chainNetMonDom5,954 chainNetMonDom5,972 chainNetMonDom5,979 chainNetMonDom5,991 chainNetMonDom5,1000 chainNetMonDom5,1021 chainNetMonDom5,1061 cpgIslandExt,62 cpgIslandExt,76 cpgIslandExt,82 cpgIslandExt,88 cpgIslandExt,111 cpgIslandExt,142 cpgIslandExt,163 cpgIslandExt,168 cpgIslandExt,172 cpgIslandExt,190 cpgIslandExt,197 cpgIslandExt,201 cpgIslandExt,207 cpgIslandExt,211 cpgIslandExt,215 cpgIslandExt,219 cpgIslandExt,231 cpgIslandExt,259 cpgIslandExt,284 cpgIslandExt,288 cpgIslandExt,291 cpgIslandExt,298 cpgIslandExt,300 cpgIslandExt,310 cpgIslandExt,313 cpgIslandExt,317 cpgIslandExt,324 cpgIslandExt,332 cpgIslandExt,336 cpgIslandExt,342 cpgIslandExt,344 cpgIslandExt,348 cpgIslandExt,355 cpgIslandExt,359 cpgIslandExt,361 cpgIslandExt,372 cpgIslandExt,398 cpgIslandExt,401 cpgIslandExt,407 cpgIslandExt,490 cpgIslandExt,501 cpgIslandExt,517 cpgIslandExt,520 cpgIslandExt,524 cpgIslandExt,528 cpgIslandExt,554 cpgIslandExt,557 cpgIslandExt,567 cpgIslandExtUnmasked,65 cpgIslandExtUnmasked,79 cpgIslandExtUnmasked,85 cpgIslandExtUnmasked,91 cpgIslandExtUnmasked,114 cpgIslandExtUnmasked,145 cpgIslandExtUnmasked,166 cpgIslandExtUnmasked,171 cpgIslandExtUnmasked,175 cpgIslandExtUnmasked,193 cpgIslandExtUnmasked,200 cpgIslandExtUnmasked,204 cpgIslandExtUnmasked,210 cpgIslandExtUnmasked,214 cpgIslandExtUnmasked,218 cpgIslandExtUnmasked,222 cpgIslandExtUnmasked,234 cpgIslandExtUnmasked,262 cpgIslandExtUnmasked,287 cpgIslandExtUnmasked,291 cpgIslandExtUnmasked,294 cpgIslandExtUnmasked,301 cpgIslandExtUnmasked,303 cpgIslandExtUnmasked,313 cpgIslandExtUnmasked,316 cpgIslandExtUnmasked,320 cpgIslandExtUnmasked,327 cpgIslandExtUnmasked,335 cpgIslandExtUnmasked,339 cpgIslandExtUnmasked,345 cpgIslandExtUnmasked,347 cpgIslandExtUnmasked,351 cpgIslandExtUnmasked,358 cpgIslandExtUnmasked,362 cpgIslandExtUnmasked,364 cpgIslandExtUnmasked,375 cpgIslandExtUnmasked,401 cpgIslandExtUnmasked,404 cpgIslandExtUnmasked,410 cpgIslandExtUnmasked,493 cpgIslandExtUnmasked,504 cpgIslandExtUnmasked,520 cpgIslandExtUnmasked,523 cpgIslandExtUnmasked,527 cpgIslandExtUnmasked,531 cpgIslandExtUnmasked,557 cpgIslandExtUnmasked,560 cpgIslandExtUnmasked,570 cpgIslandSuper,62 cpgIslandSuper,76 cpgIslandSuper,82 cpgIslandSuper,88 cpgIslandSuper,111 cpgIslandSuper,142 cpgIslandSuper,163 cpgIslandSuper,168 cpgIslandSuper,172 cpgIslandSuper,190 cpgIslandSuper,197 cpgIslandSuper,201 cpgIslandSuper,207 cpgIslandSuper,211 cpgIslandSuper,215 cpgIslandSuper,219 cpgIslandSuper,231 cpgIslandSuper,259 cpgIslandSuper,284 cpgIslandSuper,288 cpgIslandSuper,291 cpgIslandSuper,298 cpgIslandSuper,300 cpgIslandSuper,310 cpgIslandSuper,313 cpgIslandSuper,317 cpgIslandSuper,324 cpgIslandSuper,332 cpgIslandSuper,336 cpgIslandSuper,342 cpgIslandSuper,344 cpgIslandSuper,348 cpgIslandSuper,355 cpgIslandSuper,359 cpgIslandSuper,361 cpgIslandSuper,372 cpgIslandSuper,398 cpgIslandSuper,401 cpgIslandSuper,407 cpgIslandSuper,490 cpgIslandSuper,501 cpgIslandSuper,517 cpgIslandSuper,520 cpgIslandSuper,524 cpgIslandSuper,528 cpgIslandSuper,554 cpgIslandSuper,557 cpgIslandSuper,567 ctgPos2,11 ctgPos2,14 ctgPos2,18 ensGene,28 ensGene,41 ensGene,58 ensGene,72 ensGene,76 ensGene,82 ensGene,108 ensGene,114 ensGene,197 est,24 est,50 est,61 est,73 est,77 est,80 est,83 est,86 est,95 est,100 est,108 est,123 est,127 est,137 est,149 est,159 est,164 est,174 est,179 est,186 est,197 est,200 est,203 est,208 est,218 est,221 est,227 est,237 est,244 est,253 est,274 est,284 est,316 est,323 est,337 est,346 est,354 est,363 est,372 est,389 est,396 est,405 est,416 est,437 est,460 est,474 est,488 est,499 est,505 est,515 est,519 est,530 est,534 est,541 est,550 est,554 est,564 est,584 est,610 est,616 est,650 est,656 est,688 est,691 est,707 est,716 est,734 est,800 gap,13 gap,25 gap,34 gap,45 gap,58 gap,64 gap,70 gap,90 gap,94 gap,99 gap,129 gap,144 gap,152 gap,158 gc5Base,12 gc5Base,17 gc5Base,53 gc5Base,57 gc5Base,68 gc5Base,72 gold,14 gold,26 gold,29 gold,61 gold,66 gold,75 gold,92 gold,98 gold,104 gold,116 gold,121 intronEst,26 intronEst,36 intronEst,71 intronEst,94 intronEst,99 intronEst,106 intronEst,123 intronEst,134 intronEst,154 intronEst,158 intronEst,161 intronEst,164 intronEst,167 intronEst,176 intronEst,181 intronEst,189 intronEst,204 intronEst,208 intronEst,218 intronEst,230 intronEst,240 intronEst,245 intronEst,255 intronEst,260 intronEst,267 intronEst,278 intronEst,281 intronEst,284 intronEst,289 intronEst,299 intronEst,302 intronEst,308 intronEst,318 intronEst,325 intronEst,334 intronEst,355 intronEst,365 intronEst,397 intronEst,404 intronEst,418 intronEst,427 intronEst,435 intronEst,444 intronEst,453 intronEst,470 intronEst,477 intronEst,486 intronEst,497 intronEst,518 intronEst,541 intronEst,555 intronEst,569 intronEst,580 intronEst,586 intronEst,596 intronEst,600 intronEst,611 intronEst,615 intronEst,622 intronEst,631 intronEst,635 intronEst,645 intronEst,665 intronEst,691 intronEst,697 intronEst,731 intronEst,737 intronEst,769 intronEst,772 intronEst,788 intronEst,797 intronEst,818 intronEst,884 microsat,43 microsat,46 microsat,56 microsat,82 microsat,84 microsat,91 mrna,11 mrna,22 mrna,31 mrna,42 mrna,54 mrna,69 mrna,73 mrna,83 mrna,95 mrna,105 mrna,110 mrna,120 mrna,125 mrna,132 mrna,143 mrna,146 mrna,149 mrna,154 mrna,164 mrna,167 mrna,173 mrna,183 mrna,190 mrna,199 mrna,220 mrna,230 mrna,262 mrna,269 mrna,283 mrna,292 mrna,300 mrna,309 mrna,318 mrna,335 mrna,342 mrna,353 mrna,376 mrna,390 mrna,393 mrna,404 mrna,407 mrna,423 mrna,432 mrna,438 mrna,451 mrna,517 nestedRepeats,25 nestedRepeats,28 nestedRepeats,44 nestedRepeats,51 nestedRepeats,65 nestedRepeats,69 nestedRepeats,76 nestedRepeats,100 nestedRepeats,105 nestedRepeats,134 nestedRepeats,142 nestedRepeats,149 nestedRepeats,154 nestedRepeats,185 nestedRepeats,193 nestedRepeats,201 nestedRepeats,215 nestedRepeats,220 nestedRepeats,235 nestedRepeats,242 nestedRepeats,248 nestedRepeats,253 nestedRepeats,278 nestedRepeats,284 nestedRepeats,297 nestedRepeats,313 nestedRepeats,397 nestedRepeats,403 netBosTau7,19 netBosTau7,38 netBosTau7,60 netBosTau7,73 netBosTau7,119 netBosTau7,132 netBosTau7,149 netBosTau7,156 netBosTau7,202 netBosTau7,205 netBosTau7,231 netBosTau7,241 netBosTau7,246 netBosTau7,254 netBosTau7,262 netBosTau7,266 netBosTau7,275 netBosTau7,292 netBosTau7,301 netBosTau7,316 netBosTau7,331 netBosTau7,337 netBosTau7,340 netBosTau7,355 netBosTau7,361 netBosTau7,365 netBosTau7,385 netBosTau7,391 netBosTau7,405 netBosTau7,423 netBosTau7,440 netBosTau7,443 netBosTau7,448 netBosTau7,461 netBosTau7,474 netBosTau7,476 netBosTau7,483 netBosTau7,486 netBosTau7,493 netBosTau7,499 netBosTau7,512 netBosTau7,523 netBosTau7,527 netBosTau7,530 netBosTau7,538 netBosTau7,542 netBosTau7,548 netBosTau7,559 netBosTau7,562 netBosTau7,574 netBosTau7,581 netBosTau7,583 netBosTau7,591 netBosTau7,597 netBosTau7,606 netBosTau7,609 netBosTau7,639 netBosTau7,644 netBosTau7,653 netBosTau7,657 netBosTau7,664 netBosTau7,687 netBosTau7,695 netBosTau7,765 netBosTau7,769 netBosTau7,777 netBosTau7,781 netBosTau7,785 netBosTau7,793 netBosTau7,838 netBosTau7,848 netBosTau7,867 netBosTau7,870 netBosTau7,882 netBosTau7,906 netBosTau7,948 netBosTau7,954 netBosTau7,972 netBosTau7,979 netBosTau7,991 netBosTau7,1000 netBosTau7,1021 netBosTau7,1061 netHg19,18 netHg19,37 netHg19,59 netHg19,71 netHg19,117 netHg19,130 netHg19,147 netHg19,154 netHg19,200 netHg19,203 netHg19,229 netHg19,239 netHg19,244 netHg19,252 netHg19,260 netHg19,264 netHg19,273 netHg19,290 netHg19,299 netHg19,313 netHg19,328 netHg19,334 netHg19,337 netHg19,352 netHg19,358 netHg19,362 netHg19,382 netHg19,388 netHg19,402 netHg19,420 netHg19,437 netHg19,440 netHg19,445 netHg19,458 netHg19,471 netHg19,473 netHg19,480 netHg19,483 netHg19,490 netHg19,496 netHg19,509 netHg19,520 netHg19,524 netHg19,527 netHg19,535 netHg19,539 netHg19,545 netHg19,556 netHg19,559 netHg19,571 netHg19,578 netHg19,580 netHg19,588 netHg19,594 netHg19,603 netHg19,606 netHg19,636 netHg19,641 netHg19,650 netHg19,654 netHg19,661 netHg19,684 netHg19,692 netHg19,762 netHg19,766 netHg19,774 netHg19,778 netHg19,782 netHg19,790 netHg19,835 netHg19,845 netHg19,864 netHg19,867 netHg19,879 netHg19,903 netHg19,945 netHg19,951 netHg19,969 netHg19,976 netHg19,988 netHg19,997 netHg19,1018 netHg19,1058 netMm9,18 netMm9,37 netMm9,59 netMm9,71 netMm9,117 netMm9,130 netMm9,147 netMm9,154 netMm9,200 netMm9,203 netMm9,229 netMm9,239 netMm9,244 netMm9,252 netMm9,260 netMm9,264 netMm9,273 netMm9,290 netMm9,299 netMm9,313 netMm9,328 netMm9,334 netMm9,337 netMm9,352 netMm9,358 netMm9,362 netMm9,382 netMm9,388 netMm9,402 netMm9,420 netMm9,437 netMm9,440 netMm9,445 netMm9,458 netMm9,471 netMm9,473 netMm9,480 netMm9,483 netMm9,490 netMm9,496 netMm9,509 netMm9,520 netMm9,524 netMm9,527 netMm9,535 netMm9,539 netMm9,545 netMm9,556 netMm9,559 netMm9,571 netMm9,578 netMm9,580 netMm9,588 netMm9,594 netMm9,603 netMm9,606 netMm9,636 netMm9,641 netMm9,650 netMm9,654 netMm9,661 netMm9,684 netMm9,692 netMm9,762 netMm9,766 netMm9,774 netMm9,778 netMm9,782 netMm9,790 netMm9,835 netMm9,845 netMm9,864 netMm9,867 netMm9,879 netMm9,903 netMm9,945 netMm9,951 netMm9,969 netMm9,976 netMm9,988 netMm9,997 netMm9,1018 netMm9,1058 netMonDom5,18 netMonDom5,37 netMonDom5,59 netMonDom5,71 netMonDom5,117 netMonDom5,130 netMonDom5,147 netMonDom5,154 netMonDom5,200 netMonDom5,203 netMonDom5,229 netMonDom5,239 netMonDom5,244 netMonDom5,252 netMonDom5,260 netMonDom5,264 netMonDom5,273 netMonDom5,290 netMonDom5,299 netMonDom5,313 netMonDom5,328 netMonDom5,334 netMonDom5,337 netMonDom5,352 netMonDom5,358 netMonDom5,362 netMonDom5,382 netMonDom5,388 netMonDom5,402 netMonDom5,420 netMonDom5,437 netMonDom5,440 netMonDom5,445 netMonDom5,458 netMonDom5,471 netMonDom5,473 netMonDom5,480 netMonDom5,483 netMonDom5,490 netMonDom5,496 netMonDom5,509 netMonDom5,520 netMonDom5,524 netMonDom5,527 netMonDom5,535 netMonDom5,539 netMonDom5,545 netMonDom5,556 netMonDom5,559 netMonDom5,571 netMonDom5,578 netMonDom5,580 netMonDom5,588 netMonDom5,594 netMonDom5,603 netMonDom5,606 netMonDom5,636 netMonDom5,641 netMonDom5,650 netMonDom5,654 netMonDom5,661 netMonDom5,684 netMonDom5,692 netMonDom5,762 netMonDom5,766 netMonDom5,774 netMonDom5,778 netMonDom5,782 netMonDom5,790 netMonDom5,835 netMonDom5,845 netMonDom5,864 netMonDom5,867 netMonDom5,879 netMonDom5,903 netMonDom5,945 netMonDom5,951 netMonDom5,969 netMonDom5,976 netMonDom5,988 netMonDom5,997 netMonDom5,1018 netMonDom5,1058 nscanGene,16 nscanGene,24 nscanGene,42 nscanGene,61 nscanGene,85 nscanGene,89 nscanGene,105 nscanGene,143 nscanGene,204 numtS,23 numtS,48 numtS,87 numtS,100 numtS,112 numtS,117 numtS,127 numtS,130 numtS,134 numtS,140 numtS,150 numtS,158 numtS,164 numtS,168 numtS,176 numtS,182 numtS,185 numtS,191 numtS,194 numtS,197 numtS,200 numtS,206 numtS,209 numtS,214 numtS,217 numtS,226 numtS,237 numtS,243 numtS,255 numtS,259 numtS,262 numtS,270 numtS,281 numtS,288 numtS,293 numtS,311 numtS,317 numtS,320 numtS,323 numtS,326 numtS,329 numtS,332 numtS,338 numtS,341 numtS,346 numtS,349 numtS,357 numtS,368 numtS,373 numtS,376 numtS,379 numtS,383 numtS,392 numtS,414 numtS,420 numtS,428 numtS,433 numtS,436 numtS,451 numtS,458 numtS,461 numtS,485 numtS,529 numtS,558 numtS,592 numtS,603 numtSAssembled,25 numtSAssembled,50 numtSAssembled,89 numtSAssembled,102 numtSAssembled,114 numtSAssembled,119 numtSAssembled,129 numtSAssembled,132 numtSAssembled,136 numtSAssembled,142 numtSAssembled,152 numtSAssembled,160 numtSAssembled,166 numtSAssembled,170 numtSAssembled,178 numtSAssembled,184 numtSAssembled,187 numtSAssembled,193 numtSAssembled,196 numtSAssembled,199 numtSAssembled,202 numtSAssembled,208 numtSAssembled,211 numtSAssembled,216 numtSAssembled,219 numtSAssembled,228 numtSAssembled,239 numtSAssembled,245 numtSAssembled,257 numtSAssembled,261 numtSAssembled,264 numtSAssembled,272 numtSAssembled,283 numtSAssembled,290 numtSAssembled,295 numtSAssembled,313 numtSAssembled,319 numtSAssembled,322 numtSAssembled,325 numtSAssembled,328 numtSAssembled,331 numtSAssembled,334 numtSAssembled,340 numtSAssembled,343 numtSAssembled,348 numtSAssembled,351 numtSAssembled,359 numtSAssembled,370 numtSAssembled,375 numtSAssembled,378 numtSAssembled,381 numtSAssembled,385 numtSAssembled,394 numtSAssembled,416 numtSAssembled,422 numtSAssembled,430 numtSAssembled,435 numtSAssembled,438 numtSAssembled,453 numtSAssembled,460 numtSAssembled,463 numtSAssembled,487 numtSAssembled,531 numtSAssembled,560 numtSAssembled,594 numtSAssembled,605 numtSMitochondrion,27 numtSMitochondrion,52 numtSMitochondrion,91 numtSMitochondrion,104 numtSMitochondrion,116 numtSMitochondrion,121 numtSMitochondrion,131 numtSMitochondrion,134 numtSMitochondrion,138 numtSMitochondrion,144 numtSMitochondrion,154 numtSMitochondrion,162 numtSMitochondrion,168 numtSMitochondrion,172 numtSMitochondrion,180 numtSMitochondrion,186 numtSMitochondrion,189 numtSMitochondrion,195 numtSMitochondrion,198 numtSMitochondrion,201 numtSMitochondrion,204 numtSMitochondrion,210 numtSMitochondrion,213 numtSMitochondrion,218 numtSMitochondrion,221 numtSMitochondrion,230 numtSMitochondrion,241 numtSMitochondrion,247 numtSMitochondrion,259 numtSMitochondrion,263 numtSMitochondrion,266 numtSMitochondrion,274 numtSMitochondrion,285 numtSMitochondrion,292 numtSMitochondrion,297 numtSMitochondrion,315 numtSMitochondrion,321 numtSMitochondrion,324 numtSMitochondrion,327 numtSMitochondrion,330 numtSMitochondrion,333 numtSMitochondrion,336 numtSMitochondrion,342 numtSMitochondrion,345 numtSMitochondrion,350 numtSMitochondrion,353 numtSMitochondrion,361 numtSMitochondrion,372 numtSMitochondrion,377 numtSMitochondrion,380 numtSMitochondrion,383 numtSMitochondrion,387 numtSMitochondrion,396 numtSMitochondrion,418 numtSMitochondrion,424 numtSMitochondrion,432 numtSMitochondrion,437 numtSMitochondrion,440 numtSMitochondrion,455 numtSMitochondrion,462 numtSMitochondrion,465 numtSMitochondrion,489 numtSMitochondrion,533 numtSMitochondrion,562 numtSMitochondrion,596 numtSMitochondrion,607 numtSeq2012,26 numtSeq2012,51 numtSeq2012,90 numtSeq2012,103 numtSeq2012,115 numtSeq2012,120 numtSeq2012,130 numtSeq2012,133 numtSeq2012,137 numtSeq2012,143 numtSeq2012,153 numtSeq2012,161 numtSeq2012,167 numtSeq2012,171 numtSeq2012,179 numtSeq2012,185 numtSeq2012,188 numtSeq2012,194 numtSeq2012,197 numtSeq2012,200 numtSeq2012,203 numtSeq2012,209 numtSeq2012,212 numtSeq2012,217 numtSeq2012,220 numtSeq2012,229 numtSeq2012,240 numtSeq2012,246 numtSeq2012,258 numtSeq2012,262 numtSeq2012,265 numtSeq2012,273 numtSeq2012,284 numtSeq2012,291 numtSeq2012,296 numtSeq2012,314 numtSeq2012,320 numtSeq2012,323 numtSeq2012,326 numtSeq2012,329 numtSeq2012,332 numtSeq2012,335 numtSeq2012,341 numtSeq2012,344 numtSeq2012,349 numtSeq2012,352 numtSeq2012,360 numtSeq2012,371 numtSeq2012,376 numtSeq2012,379 numtSeq2012,382 numtSeq2012,386 numtSeq2012,395 numtSeq2012,417 numtSeq2012,423 numtSeq2012,431 numtSeq2012,436 numtSeq2012,439 numtSeq2012,454 numtSeq2012,461 numtSeq2012,464 numtSeq2012,488 numtSeq2012,532 numtSeq2012,561 numtSeq2012,595 numtSeq2012,606 rmsk,33 rmsk,40 rmsk,46 rmsk,60 rmsk,66 rmsk,75 rmsk,80 rmsk,87 rmsk,101 rmsk,118 rmsk,204 rmsk,210 rmsk,214 rmsk,229 rmsk,231 rmsk,236 rmsk,238 rmsk,244 rmsk,247 rmsk,260 rmsk,265 rmsk,271 rmsk,274 rmsk,281 rmsk,291 rmsk,320 rmsk,336 rmsk,420 rmsk,426 simpleRepeat,60 tRNAs,52 tRNAs,114 tRNAs,139 tRNAs,156 tRNAs,204 tRNAs,216 tRNAs,246 tRNAs,317 tRNAs,321 tRNAs,336 tRNAs,363 xenoMrna,36 xenoMrna,47 xenoMrna,59 xenoMrna,69 xenoMrna,72 xenoMrna,75 xenoMrna,82 xenoMrna,90 xenoMrna,94 xenoMrna,97 xenoMrna,103 xenoMrna,121 xenoMrna,126 xenoMrna,129 xenoMrna,144 xenoMrna,148 xenoMrna,158 xenoMrna,170 xenoMrna,180 xenoMrna,185 xenoMrna,195 xenoMrna,200 xenoMrna,207 xenoMrna,218 xenoMrna,221 xenoMrna,224 xenoMrna,229 xenoMrna,239 xenoMrna,242 xenoMrna,248 xenoMrna,258 xenoMrna,265 xenoMrna,274 xenoMrna,295 xenoMrna,305 xenoMrna,337 xenoMrna,344 xenoMrna,358 xenoMrna,367 xenoMrna,375 xenoMrna,384 xenoMrna,393 xenoMrna,410 xenoMrna,417 xenoMrna,428 xenoMrna,451 xenoMrna,459 xenoMrna,464 xenoMrna,478 xenoMrna,481 xenoMrna,498 xenoMrna,507 xenoMrna,513 xenoMrna,526 xenoMrna,592 xenoRefGene,26 xenoRefGene,33 xenoRefGene,48 xenoRefGene,55 xenoRefGene,59 xenoRefGene,63 xenoRefGene,74 xenoRefGene,89 xenoRefGene,92 xenoRefGene,95 xenoRefGene,109 xenoRefGene,115 xenoRefGene,120 xenoRefGene,125 xenoRefGene,133 xenoRefGene,161 xenoRefGene,166 xenoRefGene,181 xenoRefGene,196 xenoRefGene,209 xenoRefGene,216 xenoRefGene,221 xenoRefGene,244 xenoRefGene,247 xenoRefGene,263 xenoRefGene,272 xenoRefGene,295 their nestedRepeats,190 numtS,28 numtS,265 numtSAssembled,30 numtSAssembled,267 numtSMitochondrion,32 numtSMitochondrion,269 numtSeq2012,31 numtSeq2012,268 them chainBosTau7,800 chainHg19,797 chainMm9,797 chainMonDom5,797 chainNetBosTau7,803 chainNetHg19,800 chainNetMm9,800 chainNetMonDom5,800 cpgIslandExt,126 cpgIslandExtUnmasked,129 cpgIslandSuper,126 netBosTau7,800 netHg19,797 netMm9,797 netMonDom5,797 numtS,273 numtSAssembled,275 numtSMitochondrion,277 numtSeq2012,276 rmsk,318 tRNAs,280 then chainBosTau7,650 chainBosTau7,789 chainBosTau7,874 chainHg19,647 chainHg19,786 chainHg19,871 chainMm9,647 chainMm9,786 chainMm9,871 chainMonDom5,647 chainMonDom5,786 chainMonDom5,871 chainNetBosTau7,653 chainNetBosTau7,792 chainNetBosTau7,877 chainNetHg19,650 chainNetHg19,789 chainNetHg19,874 chainNetMm9,650 chainNetMm9,789 chainNetMm9,874 chainNetMonDom5,650 chainNetMonDom5,789 chainNetMonDom5,874 cpgIslandExt,256 cpgIslandExtUnmasked,259 cpgIslandSuper,256 nestedRepeats,232 netBosTau7,650 netBosTau7,789 netBosTau7,874 netHg19,647 netHg19,786 netHg19,871 netMm9,647 netMm9,786 netMm9,871 netMonDom5,647 netMonDom5,786 netMonDom5,871 tRNAs,54 there cpgIslandExt,120 cpgIslandExtUnmasked,123 cpgIslandSuper,120 est,619 intronEst,700 xenoMrna,115 these augustusGene,95 augustusGene,190 chainBosTau7,53 chainBosTau7,102 chainBosTau7,410 chainBosTau7,662 chainHg19,52 chainHg19,100 chainHg19,407 chainHg19,659 chainMm9,52 chainMm9,100 chainMm9,407 chainMm9,659 chainMonDom5,52 chainMonDom5,100 chainMonDom5,407 chainMonDom5,659 chainNetBosTau7,56 chainNetBosTau7,105 chainNetBosTau7,413 chainNetBosTau7,665 chainNetHg19,55 chainNetHg19,103 chainNetHg19,410 chainNetHg19,662 chainNetMm9,55 chainNetMm9,103 chainNetMm9,410 chainNetMm9,662 chainNetMonDom5,55 chainNetMonDom5,103 chainNetMonDom5,410 chainNetMonDom5,662 ensGene,17 ensGene,161 est,587 gap,30 gap,120 gap,136 intronEst,668 microsat,24 nestedRepeats,262 nestedRepeats,266 netBosTau7,53 netBosTau7,102 netBosTau7,410 netBosTau7,662 netHg19,52 netHg19,100 netHg19,407 netHg19,659 netMm9,52 netMm9,100 netMm9,407 netMm9,659 netMonDom5,52 netMonDom5,100 netMonDom5,407 netMonDom5,659 numtS,468 numtSAssembled,470 numtSMitochondrion,472 numtSeq2012,471 rmsk,235 simpleRepeat,33 tRNAs,56 tRNAs,223 tRNAs,257 tRNAs,303 tRNAs,359 thesis chainBosTau7,1020 chainHg19,1017 chainMm9,1017 chainMonDom5,1017 chainNetBosTau7,1023 chainNetHg19,1020 chainNetMm9,1020 chainNetMonDom5,1020 netBosTau7,1020 netHg19,1017 netMm9,1017 netMonDom5,1017 they chainBosTau7,327 chainHg19,324 chainMm9,324 chainMonDom5,324 chainNetBosTau7,330 chainNetHg19,327 chainNetMm9,327 chainNetMonDom5,327 netBosTau7,327 netHg19,324 netMm9,324 netMonDom5,324 tRNAs,188 tRNAs,267 thibaud-nissen xenoRefGene,323 thick chainBosTau7,44 chainHg19,43 chainMm9,43 chainMonDom5,43 chainNetBosTau7,47 chainNetHg19,46 chainNetMm9,46 chainNetMonDom5,46 netBosTau7,44 netHg19,43 netMm9,43 netMonDom5,43 this augustusGene,13 augustusGene,106 augustusGene,224 blastHg18KG,14 blastHg18KG,189 chainBosTau7,14 chainBosTau7,172 chainBosTau7,297 chainBosTau7,397 chainBosTau7,693 chainBosTau7,815 chainHg19,13 chainHg19,170 chainHg19,295 chainHg19,394 chainHg19,690 chainHg19,812 chainMm9,13 chainMm9,170 chainMm9,295 chainMm9,394 chainMm9,690 chainMm9,812 chainMonDom5,13 chainMonDom5,170 chainMonDom5,295 chainMonDom5,394 chainMonDom5,690 chainMonDom5,812 chainNetBosTau7,17 chainNetBosTau7,175 chainNetBosTau7,300 chainNetBosTau7,400 chainNetBosTau7,696 chainNetBosTau7,818 chainNetHg19,16 chainNetHg19,173 chainNetHg19,298 chainNetHg19,397 chainNetHg19,693 chainNetHg19,815 chainNetMm9,16 chainNetMm9,173 chainNetMm9,298 chainNetMm9,397 chainNetMm9,693 chainNetMm9,815 chainNetMonDom5,16 chainNetMonDom5,173 chainNetMonDom5,298 chainNetMonDom5,397 chainNetMonDom5,693 chainNetMonDom5,815 cpgIslandExt,72 cpgIslandExt,222 cpgIslandExt,585 cpgIslandExtUnmasked,75 cpgIslandExtUnmasked,225 cpgIslandExtUnmasked,588 cpgIslandSuper,72 cpgIslandSuper,222 cpgIslandSuper,585 ctgPos2,8 ctgPos2,26 ensGene,126 ensGene,142 est,11 est,47 est,112 est,139 est,375 est,412 est,592 est,628 est,641 est,722 gap,8 gap,55 gap,96 gc5Base,38 gc5Base,77 gold,9 gold,58 gold,125 intronEst,13 intronEst,131 intronEst,193 intronEst,220 intronEst,456 intronEst,493 intronEst,673 intronEst,709 intronEst,722 intronEst,803 intronEst,806 microsat,11 microsat,50 microsat,99 mrna,28 mrna,58 mrna,85 mrna,321 mrna,349 nestedRepeats,15 nestedRepeats,79 nestedRepeats,321 netBosTau7,14 netBosTau7,172 netBosTau7,297 netBosTau7,397 netBosTau7,693 netBosTau7,815 netHg19,13 netHg19,170 netHg19,295 netHg19,394 netHg19,690 netHg19,812 netMm9,13 netMm9,170 netMm9,295 netMm9,394 netMm9,690 netMm9,812 netMonDom5,13 netMonDom5,170 netMonDom5,295 netMonDom5,394 netMonDom5,690 netMonDom5,812 nscanGene,10 nscanGene,130 nscanGene,135 rmsk,10 rmsk,51 rmsk,143 rmsk,344 simpleRepeat,12 simpleRepeat,31 tRNAs,14 tRNAs,134 xenoMrna,11 xenoMrna,33 xenoMrna,63 xenoMrna,133 xenoMrna,160 xenoMrna,396 xenoMrna,424 xenoRefGene,11 xenoRefGene,36 xenoRefGene,45 xenoRefGene,83 xenoRefGene,138 xenoRefGene,177 xenoRefGene,213 xenoRefGene,278 those est,368 est,401 intronEst,449 intronEst,482 microsat,62 mrna,314 nestedRepeats,272 tRNAs,176 xenoMrna,389 xenoMrna,488 xenoRefGene,226 thousands chainBosTau7,252 chainHg19,250 chainMm9,250 chainMonDom5,250 chainNetBosTau7,255 chainNetHg19,253 chainNetMm9,253 chainNetMonDom5,253 netBosTau7,252 netHg19,250 netMm9,250 netMonDom5,250 three numtS,453 numtSAssembled,455 numtSMitochondrion,457 numtSeq2012,456 threshold numtS,430 numtSAssembled,432 numtSMitochondrion,434 numtSeq2012,433 through gap,89 nestedRepeats,97 rmsk,309 xenoRefGene,88 thus numtS,231 numtSAssembled,233 numtSMitochondrion,235 numtSeq2012,234 time chainBosTau7,798 chainHg19,795 chainMm9,795 chainMonDom5,795 chainNetBosTau7,801 chainNetHg19,798 chainNetMm9,798 chainNetMonDom5,798 cpgIslandExt,99 cpgIslandExt,237 cpgIslandExtUnmasked,102 cpgIslandExtUnmasked,240 cpgIslandSuper,99 cpgIslandSuper,237 netBosTau7,798 netHg19,795 netMm9,795 netMonDom5,795 tissue est,204 est,239 est,254 intronEst,285 intronEst,320 intronEst,335 mrna,150 mrna,185 mrna,200 xenoMrna,225 xenoMrna,260 xenoMrna,275 tissues est,247 intronEst,328 mrna,193 xenoMrna,268 tm tRNAs,369 tRNAs,441 to augustusGene,115 augustusGene,170 augustusGene,249 augustusGene,301 blastHg18KG,56 blastHg18KG,187 chainBosTau7,24 chainBosTau7,72 chainBosTau7,145 chainBosTau7,213 chainBosTau7,225 chainBosTau7,318 chainBosTau7,329 chainBosTau7,334 chainBosTau7,346 chainBosTau7,352 chainBosTau7,375 chainBosTau7,456 chainBosTau7,470 chainBosTau7,554 chainBosTau7,655 chainBosTau7,791 chainBosTau7,803 chainBosTau7,843 chainBosTau7,866 chainBosTau7,876 chainHg19,23 chainHg19,70 chainHg19,143 chainHg19,211 chainHg19,223 chainHg19,315 chainHg19,326 chainHg19,331 chainHg19,343 chainHg19,349 chainHg19,372 chainHg19,453 chainHg19,467 chainHg19,551 chainHg19,652 chainHg19,788 chainHg19,800 chainHg19,840 chainHg19,863 chainHg19,873 chainMm9,23 chainMm9,70 chainMm9,143 chainMm9,211 chainMm9,223 chainMm9,315 chainMm9,326 chainMm9,331 chainMm9,343 chainMm9,349 chainMm9,372 chainMm9,453 chainMm9,467 chainMm9,551 chainMm9,652 chainMm9,788 chainMm9,800 chainMm9,840 chainMm9,863 chainMm9,873 chainMonDom5,23 chainMonDom5,70 chainMonDom5,143 chainMonDom5,211 chainMonDom5,223 chainMonDom5,315 chainMonDom5,326 chainMonDom5,331 chainMonDom5,343 chainMonDom5,349 chainMonDom5,372 chainMonDom5,453 chainMonDom5,467 chainMonDom5,551 chainMonDom5,652 chainMonDom5,788 chainMonDom5,800 chainMonDom5,840 chainMonDom5,863 chainMonDom5,873 chainNetBosTau7,27 chainNetBosTau7,75 chainNetBosTau7,148 chainNetBosTau7,216 chainNetBosTau7,228 chainNetBosTau7,321 chainNetBosTau7,332 chainNetBosTau7,337 chainNetBosTau7,349 chainNetBosTau7,355 chainNetBosTau7,378 chainNetBosTau7,459 chainNetBosTau7,473 chainNetBosTau7,557 chainNetBosTau7,658 chainNetBosTau7,794 chainNetBosTau7,806 chainNetBosTau7,846 chainNetBosTau7,869 chainNetBosTau7,879 chainNetHg19,26 chainNetHg19,73 chainNetHg19,146 chainNetHg19,214 chainNetHg19,226 chainNetHg19,318 chainNetHg19,329 chainNetHg19,334 chainNetHg19,346 chainNetHg19,352 chainNetHg19,375 chainNetHg19,456 chainNetHg19,470 chainNetHg19,554 chainNetHg19,655 chainNetHg19,791 chainNetHg19,803 chainNetHg19,843 chainNetHg19,866 chainNetHg19,876 chainNetMm9,26 chainNetMm9,73 chainNetMm9,146 chainNetMm9,214 chainNetMm9,226 chainNetMm9,318 chainNetMm9,329 chainNetMm9,334 chainNetMm9,346 chainNetMm9,352 chainNetMm9,375 chainNetMm9,456 chainNetMm9,470 chainNetMm9,554 chainNetMm9,655 chainNetMm9,791 chainNetMm9,803 chainNetMm9,843 chainNetMm9,866 chainNetMm9,876 chainNetMonDom5,26 chainNetMonDom5,73 chainNetMonDom5,146 chainNetMonDom5,214 chainNetMonDom5,226 chainNetMonDom5,318 chainNetMonDom5,329 chainNetMonDom5,334 chainNetMonDom5,346 chainNetMonDom5,352 chainNetMonDom5,375 chainNetMonDom5,456 chainNetMonDom5,470 chainNetMonDom5,554 chainNetMonDom5,655 chainNetMonDom5,791 chainNetMonDom5,803 chainNetMonDom5,843 chainNetMonDom5,866 chainNetMonDom5,876 cpgIslandExt,69 cpgIslandExt,103 cpgIslandExt,124 cpgIslandExt,139 cpgIslandExt,205 cpgIslandExt,283 cpgIslandExt,358 cpgIslandExt,365 cpgIslandExt,371 cpgIslandExtUnmasked,72 cpgIslandExtUnmasked,106 cpgIslandExtUnmasked,127 cpgIslandExtUnmasked,142 cpgIslandExtUnmasked,208 cpgIslandExtUnmasked,286 cpgIslandExtUnmasked,361 cpgIslandExtUnmasked,368 cpgIslandExtUnmasked,374 cpgIslandSuper,69 cpgIslandSuper,103 cpgIslandSuper,124 cpgIslandSuper,139 cpgIslandSuper,205 cpgIslandSuper,283 cpgIslandSuper,358 cpgIslandSuper,365 cpgIslandSuper,371 ensGene,6 ensGene,50 ensGene,156 est,94 est,121 est,158 est,162 est,177 est,184 est,188 est,206 est,226 est,233 est,332 est,381 est,391 est,415 est,436 est,445 est,514 est,579 est,639 est,733 gc5Base,48 gold,39 gold,119 intronEst,55 intronEst,175 intronEst,202 intronEst,239 intronEst,243 intronEst,258 intronEst,265 intronEst,269 intronEst,287 intronEst,307 intronEst,314 intronEst,413 intronEst,462 intronEst,472 intronEst,496 intronEst,517 intronEst,526 intronEst,595 intronEst,660 intronEst,720 intronEst,817 microsat,18 microsat,38 microsat,121 mrna,67 mrna,104 mrna,108 mrna,123 mrna,130 mrna,134 mrna,152 mrna,172 mrna,179 mrna,278 mrna,327 mrna,337 mrna,352 mrna,375 mrna,450 nestedRepeats,148 nestedRepeats,152 nestedRepeats,174 nestedRepeats,184 nestedRepeats,200 nestedRepeats,225 nestedRepeats,234 nestedRepeats,260 nestedRepeats,304 nestedRepeats,319 netBosTau7,24 netBosTau7,72 netBosTau7,145 netBosTau7,213 netBosTau7,225 netBosTau7,318 netBosTau7,329 netBosTau7,334 netBosTau7,346 netBosTau7,352 netBosTau7,375 netBosTau7,456 netBosTau7,470 netBosTau7,554 netBosTau7,655 netBosTau7,791 netBosTau7,803 netBosTau7,843 netBosTau7,866 netBosTau7,876 netHg19,23 netHg19,70 netHg19,143 netHg19,211 netHg19,223 netHg19,315 netHg19,326 netHg19,331 netHg19,343 netHg19,349 netHg19,372 netHg19,453 netHg19,467 netHg19,551 netHg19,652 netHg19,788 netHg19,800 netHg19,840 netHg19,863 netHg19,873 netMm9,23 netMm9,70 netMm9,143 netMm9,211 netMm9,223 netMm9,315 netMm9,326 netMm9,331 netMm9,343 netMm9,349 netMm9,372 netMm9,453 netMm9,467 netMm9,551 netMm9,652 netMm9,788 netMm9,800 netMm9,840 netMm9,863 netMm9,873 netMonDom5,23 netMonDom5,70 netMonDom5,143 netMonDom5,211 netMonDom5,223 netMonDom5,315 netMonDom5,326 netMonDom5,331 netMonDom5,343 netMonDom5,349 netMonDom5,372 netMonDom5,453 netMonDom5,467 netMonDom5,551 netMonDom5,652 netMonDom5,788 netMonDom5,800 netMonDom5,840 netMonDom5,863 netMonDom5,873 nscanGene,53 nscanGene,66 nscanGene,116 nscanGene,139 nscanGene,166 numtS,110 numtS,115 numtS,120 numtS,225 numtS,356 numtS,431 numtS,565 numtSAssembled,112 numtSAssembled,117 numtSAssembled,122 numtSAssembled,227 numtSAssembled,358 numtSAssembled,433 numtSAssembled,567 numtSMitochondrion,114 numtSMitochondrion,119 numtSMitochondrion,124 numtSMitochondrion,229 numtSMitochondrion,360 numtSMitochondrion,435 numtSMitochondrion,569 numtSeq2012,113 numtSeq2012,118 numtSeq2012,123 numtSeq2012,228 numtSeq2012,359 numtSeq2012,434 numtSeq2012,568 rmsk,147 rmsk,315 rmsk,327 rmsk,342 simpleRepeat,81 tRNAs,44 tRNAs,66 tRNAs,127 tRNAs,170 tRNAs,219 tRNAs,251 xenoMrna,87 xenoMrna,142 xenoMrna,179 xenoMrna,183 xenoMrna,198 xenoMrna,205 xenoMrna,209 xenoMrna,227 xenoMrna,247 xenoMrna,254 xenoMrna,353 xenoMrna,402 xenoMrna,412 xenoMrna,427 xenoMrna,450 xenoMrna,525 xenoRefGene,113 xenoRefGene,149 xenoRefGene,156 xenoRefGene,180 xenoRefGene,206 together blastHg18KG,87 chainBosTau7,125 chainHg19,123 chainMm9,123 chainMonDom5,123 chainNetBosTau7,128 chainNetHg19,126 chainNetMm9,126 chainNetMonDom5,126 netBosTau7,125 netHg19,123 netMm9,123 netMonDom5,123 tolerate chainBosTau7,94 chainHg19,92 chainMm9,92 chainMonDom5,92 chainNetBosTau7,97 chainNetHg19,95 chainNetMm9,95 chainNetMonDom5,95 netBosTau7,94 netHg19,92 netMm9,92 netMonDom5,92 tool blastHg18KG,145 blastHg18KG,167 est,803 intronEst,887 mrna,520 xenoMrna,595 xenoRefGene,305 tools nestedRepeats,314 rmsk,337 top chainBosTau7,511 chainHg19,508 chainMm9,508 chainMonDom5,508 chainNetBosTau7,514 chainNetHg19,511 chainNetMm9,511 chainNetMonDom5,511 cpgIslandExt,220 cpgIslandExtUnmasked,223 cpgIslandSuper,220 netBosTau7,511 netHg19,508 netMm9,508 netMonDom5,508 xenoRefGene,93 top-level chainBosTau7,386 chainBosTau7,406 chainHg19,383 chainHg19,403 chainMm9,383 chainMm9,403 chainMonDom5,383 chainMonDom5,403 chainNetBosTau7,389 chainNetBosTau7,409 chainNetHg19,386 chainNetHg19,406 chainNetMm9,386 chainNetMm9,406 chainNetMonDom5,386 chainNetMonDom5,406 netBosTau7,386 netBosTau7,406 netHg19,383 netHg19,403 netMm9,383 netMm9,403 netMonDom5,383 netMonDom5,403 town nscanGene,199 track augustusGene,14 augustusGene,107 blastHg18KG,15 blastHg18KG,34 blastHg18KG,45 blastHg18KG,190 chainBosTau7,15 chainBosTau7,59 chainBosTau7,62 chainBosTau7,121 chainBosTau7,261 chainBosTau7,264 chainBosTau7,313 chainBosTau7,348 chainBosTau7,380 chainBosTau7,567 chainBosTau7,694 chainBosTau7,757 chainHg19,14 chainHg19,58 chainHg19,61 chainHg19,119 chainHg19,259 chainHg19,262 chainHg19,310 chainHg19,345 chainHg19,377 chainHg19,564 chainHg19,691 chainHg19,754 chainMm9,14 chainMm9,58 chainMm9,61 chainMm9,119 chainMm9,259 chainMm9,262 chainMm9,310 chainMm9,345 chainMm9,377 chainMm9,564 chainMm9,691 chainMm9,754 chainMonDom5,14 chainMonDom5,58 chainMonDom5,61 chainMonDom5,119 chainMonDom5,259 chainMonDom5,262 chainMonDom5,310 chainMonDom5,345 chainMonDom5,377 chainMonDom5,564 chainMonDom5,691 chainMonDom5,754 chainNetBosTau7,18 chainNetBosTau7,62 chainNetBosTau7,65 chainNetBosTau7,124 chainNetBosTau7,264 chainNetBosTau7,267 chainNetBosTau7,316 chainNetBosTau7,351 chainNetBosTau7,383 chainNetBosTau7,570 chainNetBosTau7,697 chainNetBosTau7,760 chainNetHg19,17 chainNetHg19,61 chainNetHg19,64 chainNetHg19,122 chainNetHg19,262 chainNetHg19,265 chainNetHg19,313 chainNetHg19,348 chainNetHg19,380 chainNetHg19,567 chainNetHg19,694 chainNetHg19,757 chainNetMm9,17 chainNetMm9,61 chainNetMm9,64 chainNetMm9,122 chainNetMm9,262 chainNetMm9,265 chainNetMm9,313 chainNetMm9,348 chainNetMm9,380 chainNetMm9,567 chainNetMm9,694 chainNetMm9,757 chainNetMonDom5,17 chainNetMonDom5,61 chainNetMonDom5,64 chainNetMonDom5,122 chainNetMonDom5,262 chainNetMonDom5,265 chainNetMonDom5,313 chainNetMonDom5,348 chainNetMonDom5,380 chainNetMonDom5,567 chainNetMonDom5,694 chainNetMonDom5,757 cpgIslandExt,173 cpgIslandExt,202 cpgIslandExt,216 cpgIslandExt,314 cpgIslandExt,318 cpgIslandExt,402 cpgIslandExt,492 cpgIslandExt,586 cpgIslandExtUnmasked,176 cpgIslandExtUnmasked,205 cpgIslandExtUnmasked,219 cpgIslandExtUnmasked,317 cpgIslandExtUnmasked,321 cpgIslandExtUnmasked,405 cpgIslandExtUnmasked,495 cpgIslandExtUnmasked,589 cpgIslandSuper,173 cpgIslandSuper,202 cpgIslandSuper,216 cpgIslandSuper,314 cpgIslandSuper,318 cpgIslandSuper,402 cpgIslandSuper,492 cpgIslandSuper,586 ctgPos2,9 ctgPos2,27 ensGene,143 est,12 est,48 est,113 est,138 est,150 est,376 est,642 est,723 gap,9 gap,56 gc5Base,15 gc5Base,39 gold,10 gold,59 gold,126 intronEst,14 intronEst,126 intronEst,132 intronEst,194 intronEst,219 intronEst,231 intronEst,457 intronEst,723 intronEst,804 intronEst,807 microsat,12 microsat,51 microsat,59 microsat,87 mrna,13 mrna,29 mrna,59 mrna,84 mrna,96 mrna,322 mrna,440 nestedRepeats,16 nestedRepeats,78 nestedRepeats,80 nestedRepeats,322 netBosTau7,15 netBosTau7,59 netBosTau7,62 netBosTau7,121 netBosTau7,261 netBosTau7,264 netBosTau7,313 netBosTau7,348 netBosTau7,380 netBosTau7,567 netBosTau7,694 netBosTau7,757 netHg19,14 netHg19,58 netHg19,61 netHg19,119 netHg19,259 netHg19,262 netHg19,310 netHg19,345 netHg19,377 netHg19,564 netHg19,691 netHg19,754 netMm9,14 netMm9,58 netMm9,61 netMm9,119 netMm9,259 netMm9,262 netMm9,310 netMm9,345 netMm9,377 netMm9,564 netMm9,691 netMm9,754 netMonDom5,14 netMonDom5,58 netMonDom5,61 netMonDom5,119 netMonDom5,259 netMonDom5,262 netMonDom5,310 netMonDom5,345 netMonDom5,377 netMonDom5,564 netMonDom5,691 netMonDom5,754 nscanGene,11 numtS,175 numtS,180 numtS,242 numtS,246 numtS,257 numtS,310 numtS,315 numtS,367 numtSAssembled,177 numtSAssembled,182 numtSAssembled,244 numtSAssembled,248 numtSAssembled,259 numtSAssembled,312 numtSAssembled,317 numtSAssembled,369 numtSMitochondrion,179 numtSMitochondrion,184 numtSMitochondrion,246 numtSMitochondrion,250 numtSMitochondrion,261 numtSMitochondrion,314 numtSMitochondrion,319 numtSMitochondrion,371 numtSeq2012,178 numtSeq2012,183 numtSeq2012,245 numtSeq2012,249 numtSeq2012,260 numtSeq2012,313 numtSeq2012,318 numtSeq2012,370 rmsk,11 rmsk,52 rmsk,144 rmsk,345 simpleRepeat,13 tRNAs,15 xenoMrna,12 xenoMrna,34 xenoMrna,64 xenoMrna,134 xenoMrna,159 xenoMrna,171 xenoMrna,397 xenoMrna,515 xenoRefGene,12 xenoRefGene,37 xenoRefGene,46 xenoRefGene,84 xenoRefGene,96 xenoRefGene,139 xenoRefGene,168 xenoRefGene,279 tracks augustusGene,41 chainBosTau7,771 chainHg19,768 chainMm9,768 chainMonDom5,768 chainNetBosTau7,774 chainNetHg19,771 chainNetMm9,771 chainNetMonDom5,771 ensGene,31 est,56 est,421 intronEst,140 intronEst,502 mrna,37 mrna,360 netBosTau7,771 netHg19,768 netMm9,768 netMonDom5,768 numtS,137 numtS,142 numtS,455 numtSAssembled,139 numtSAssembled,144 numtSAssembled,457 numtSMitochondrion,141 numtSMitochondrion,146 numtSMitochondrion,459 numtSeq2012,140 numtSeq2012,145 numtSeq2012,458 xenoMrna,42 xenoMrna,435 xenoRefGene,54 traditional chainBosTau7,86 chainHg19,84 chainMm9,84 chainMonDom5,84 chainNetBosTau7,89 chainNetHg19,87 chainNetMm9,87 chainNetMonDom5,87 netBosTau7,86 netHg19,84 netMm9,84 netMonDom5,84 trained augustusGene,150 training augustusGene,162 augustusGene,176 augustusGene,180 augustusGene,199 augustusGene,228 augustusGene,243 augustusGene,259 augustusGene,273 transcribed est,41 est,456 intronEst,53 intronEst,537 transcript est,551 intronEst,632 nscanGene,210 transcriptase est,507 intronEst,588 transcription cpgIslandExt,32 cpgIslandExtUnmasked,35 cpgIslandSuper,32 est,98 est,490 est,537 est,559 intronEst,179 intronEst,571 intronEst,618 intronEst,640 transcriptional tRNAs,497 transcripts augustusGene,124 xenoRefGene,376 transfer tRNAs,3 tRNAs,374 tRNAs,451 translated xenoMrna,14 xenoMrna,79 xenoMrna,99 xenoMrna,468 translation augustusGene,57 tRNAs,159 tRNAs,195 transposable nestedRepeats,379 rmsk,402 transposons chainBosTau7,568 chainBosTau7,592 chainBosTau7,901 chainHg19,565 chainHg19,589 chainHg19,898 chainMm9,565 chainMm9,589 chainMm9,898 chainMonDom5,565 chainMonDom5,589 chainMonDom5,898 chainNetBosTau7,571 chainNetBosTau7,595 chainNetBosTau7,904 chainNetHg19,568 chainNetHg19,592 chainNetHg19,901 chainNetMm9,568 chainNetMm9,592 chainNetMm9,901 chainNetMonDom5,568 chainNetMonDom5,592 chainNetMonDom5,901 netBosTau7,568 netBosTau7,592 netBosTau7,901 netHg19,565 netHg19,589 netHg19,898 netMm9,565 netMm9,589 netMm9,898 netMonDom5,565 netMonDom5,589 netMonDom5,898 treat tRNAs,279 trends nestedRepeats,353 rmsk,376 trf simpleRepeat,7 simpleRepeat,26 simpleRepeat,61 simpleRepeat,67 tri-nucleotide microsat,5 microsat,34 trimming chainBosTau7,799 chainHg19,796 chainMm9,796 chainMonDom5,796 chainNetBosTau7,802 chainNetHg19,799 chainNetMm9,799 chainNetMonDom5,799 netBosTau7,799 netHg19,796 netMm9,796 netMonDom5,796 trna rmsk,190 tRNAs,1 tRNAs,17 tRNAs,50 tRNAs,98 tRNAs,109 tRNAs,132 tRNAs,140 tRNAs,146 tRNAs,173 tRNAs,275 tRNAs,285 tRNAs,313 tRNAs,342 tRNAs,423 tRNAs,484 trna-derived tRNAs,149 tRNAs,301 trnas tRNAs,84 tRNAs,161 tRNAs,196 tRNAs,225 trnascan tRNAs,31 trnascan-se tRNAs,8 tRNAs,22 tRNAs,24 tRNAs,115 tRNAs,330 tRNAs,444 true augustusGene,132 tRNAs,83 ts cpgIslandExt,106 cpgIslandExtUnmasked,109 cpgIslandSuper,106 turn chainBosTau7,335 chainHg19,332 chainMm9,332 chainMonDom5,332 chainNetBosTau7,338 chainNetHg19,335 chainNetMm9,335 chainNetMonDom5,335 cpgIslandExt,104 cpgIslandExtUnmasked,107 cpgIslandSuper,104 netBosTau7,335 netHg19,332 netMm9,332 netMonDom5,332 xenoRefGene,131 twice cpgIslandExt,354 cpgIslandExtUnmasked,357 cpgIslandSuper,354 twinscan nscanGene,62 two chainBosTau7,907 chainHg19,904 chainMm9,904 chainMonDom5,904 chainNetBosTau7,910 chainNetHg19,907 chainNetMm9,907 chainNetMonDom5,907 netBosTau7,907 netHg19,904 netMm9,904 netMonDom5,904 numtS,305 numtSAssembled,307 numtSMitochondrion,309 numtSeq2012,308 xenoMrna,67 xenoMrna,104 twobittofa cpgIslandExt,411 cpgIslandExt,497 cpgIslandExt,502 cpgIslandExtUnmasked,414 cpgIslandExtUnmasked,500 cpgIslandExtUnmasked,505 cpgIslandSuper,411 cpgIslandSuper,497 cpgIslandSuper,502 type est,166 est,196 intronEst,247 intronEst,277 mrna,112 mrna,142 xenoMrna,187 xenoMrna,217 types augustusGene,89 chainBosTau7,507 chainHg19,504 chainMm9,504 chainMonDom5,504 chainNetBosTau7,510 chainNetHg19,507 chainNetMm9,507 chainNetMonDom5,507 ctgPos2,30 est,245 est,424 gap,102 gold,129 intronEst,326 intronEst,505 mrna,191 mrna,363 netBosTau7,507 netHg19,504 netMm9,504 netMonDom5,504 xenoMrna,266 xenoMrna,438 typical cpgIslandExt,161 cpgIslandExtUnmasked,164 cpgIslandSuper,161 tRNAs,311 typically cpgIslandExt,29 cpgIslandExtUnmasked,32 cpgIslandSuper,29 est,30 est,459 gc5Base,33 intronEst,42 intronEst,540 u chainBosTau7,1070 chainHg19,1067 chainMm9,1067 chainMonDom5,1067 chainNetBosTau7,1073 chainNetHg19,1070 chainNetMm9,1070 chainNetMonDom5,1070 netBosTau7,1070 netHg19,1067 netMm9,1067 netMonDom5,1067 ucsc blastHg18KG,32 blastHg18KG,43 est,727 intronEst,811 mrna,444 nestedRepeats,245 numtS,530 numtS,604 numtSAssembled,532 numtSAssembled,606 numtSMitochondrion,534 numtSMitochondrion,608 numtSeq2012,533 numtSeq2012,607 tRNAs,340 xenoMrna,519 xenoRefGene,283 under numtS,38 numtSAssembled,40 numtSMitochondrion,42 numtSeq2012,41 undergone xenoRefGene,67 underlying xenoRefGene,35 underneath chainBosTau7,835 chainHg19,832 chainMm9,832 chainMonDom5,832 chainNetBosTau7,838 chainNetHg19,835 chainNetMm9,835 chainNetMonDom5,835 netBosTau7,835 netHg19,832 netMm9,832 netMonDom5,832 ungapped chainBosTau7,446 chainHg19,443 chainMm9,443 chainMonDom5,443 chainNetBosTau7,449 chainNetHg19,446 chainNetMm9,446 chainNetMonDom5,446 netBosTau7,446 netHg19,443 netMm9,443 netMonDom5,443 university chainBosTau7,921 chainBosTau7,955 chainBosTau7,1001 chainBosTau7,1024 chainHg19,918 chainHg19,952 chainHg19,998 chainHg19,1021 chainMm9,918 chainMm9,952 chainMm9,998 chainMm9,1021 chainMonDom5,918 chainMonDom5,952 chainMonDom5,998 chainMonDom5,1021 chainNetBosTau7,924 chainNetBosTau7,958 chainNetBosTau7,1004 chainNetBosTau7,1027 chainNetHg19,921 chainNetHg19,955 chainNetHg19,1001 chainNetHg19,1024 chainNetMm9,921 chainNetMm9,955 chainNetMm9,1001 chainNetMm9,1024 chainNetMonDom5,921 chainNetMonDom5,955 chainNetMonDom5,1001 chainNetMonDom5,1024 netBosTau7,921 netBosTau7,955 netBosTau7,1001 netBosTau7,1024 netHg19,918 netHg19,952 netHg19,998 netHg19,1021 netMm9,918 netMm9,952 netMm9,998 netMm9,1021 netMonDom5,918 netMonDom5,952 netMonDom5,998 netMonDom5,1021 nscanGene,30 nscanGene,125 numtS,94 numtS,494 numtSAssembled,96 numtSAssembled,496 numtSMitochondrion,98 numtSMitochondrion,498 numtSeq2012,97 numtSeq2012,497 unknown gap,147 rmsk,203 unless cpgIslandExt,119 cpgIslandExtUnmasked,122 cpgIslandSuper,119 nestedRepeats,206 unmasked cpgIslandExt,169 cpgIslandExt,208 cpgIslandExt,315 cpgIslandExt,491 cpgIslandExtUnmasked,1 cpgIslandExtUnmasked,172 cpgIslandExtUnmasked,211 cpgIslandExtUnmasked,318 cpgIslandExtUnmasked,494 cpgIslandSuper,169 cpgIslandSuper,208 cpgIslandSuper,315 cpgIslandSuper,491 unprocessed chainBosTau7,228 chainHg19,226 chainMm9,226 chainMonDom5,226 chainNetBosTau7,231 chainNetHg19,229 chainNetMm9,229 chainNetMonDom5,229 est,602 intronEst,683 netBosTau7,228 netHg19,226 netMm9,226 netMonDom5,226 unpublished cpgIslandExt,602 cpgIslandExtUnmasked,605 cpgIslandSuper,602 unsequenced chainBosTau7,186 chainHg19,184 chainMm9,184 chainMonDom5,184 chainNetBosTau7,189 chainNetHg19,187 chainNetMm9,187 chainNetMonDom5,187 netBosTau7,186 netHg19,184 netMm9,184 netMonDom5,184 unspliced est,6 est,631 intronEst,121 intronEst,712 unsure rmsk,263 up blastHg18KG,67 gold,65 rmsk,146 update est,782 intronEst,866 mrna,499 nestedRepeats,46 nestedRepeats,58 nestedRepeats,336 nestedRepeats,343 rmsk,82 rmsk,94 rmsk,359 rmsk,366 xenoMrna,574 xenoRefGene,341 updated nscanGene,107 xenoRefGene,39 usa nscanGene,35 use est,163 gold,76 intronEst,244 mrna,109 tRNAs,357 xenoMrna,184 used augustusGene,146 augustusGene,174 augustusGene,183 augustusGene,231 augustusGene,246 blastHg18KG,186 chainBosTau7,295 chainBosTau7,668 chainBosTau7,699 chainBosTau7,790 chainBosTau7,842 chainBosTau7,875 chainHg19,293 chainHg19,665 chainHg19,696 chainHg19,787 chainHg19,839 chainHg19,872 chainMm9,293 chainMm9,665 chainMm9,696 chainMm9,787 chainMm9,839 chainMm9,872 chainMonDom5,293 chainMonDom5,665 chainMonDom5,696 chainMonDom5,787 chainMonDom5,839 chainMonDom5,872 chainNetBosTau7,298 chainNetBosTau7,671 chainNetBosTau7,702 chainNetBosTau7,793 chainNetBosTau7,845 chainNetBosTau7,878 chainNetHg19,296 chainNetHg19,668 chainNetHg19,699 chainNetHg19,790 chainNetHg19,842 chainNetHg19,875 chainNetMm9,296 chainNetMm9,668 chainNetMm9,699 chainNetMm9,790 chainNetMm9,842 chainNetMm9,875 chainNetMonDom5,296 chainNetMonDom5,668 chainNetMonDom5,699 chainNetMonDom5,790 chainNetMonDom5,842 chainNetMonDom5,875 cpgIslandExt,308 cpgIslandExtUnmasked,311 cpgIslandSuper,308 ensGene,43 est,120 est,272 est,331 est,570 intronEst,201 intronEst,353 intronEst,412 intronEst,651 mrna,66 mrna,218 mrna,277 nestedRepeats,247 nestedRepeats,292 nestedRepeats,318 netBosTau7,295 netBosTau7,668 netBosTau7,699 netBosTau7,790 netBosTau7,842 netBosTau7,875 netHg19,293 netHg19,665 netHg19,696 netHg19,787 netHg19,839 netHg19,872 netMm9,293 netMm9,665 netMm9,696 netMm9,787 netMm9,839 netMm9,872 netMonDom5,293 netMonDom5,665 netMonDom5,696 netMonDom5,787 netMonDom5,839 netMonDom5,872 numtS,449 numtSAssembled,451 numtSMitochondrion,453 numtSeq2012,452 rmsk,299 rmsk,341 xenoMrna,141 xenoMrna,293 xenoMrna,352 useful chainBosTau7,280 chainBosTau7,480 chainHg19,278 chainHg19,477 chainMm9,278 chainMm9,477 chainMonDom5,278 chainMonDom5,477 chainNetBosTau7,283 chainNetBosTau7,483 chainNetHg19,281 chainNetHg19,480 chainNetMm9,281 chainNetMm9,480 chainNetMonDom5,281 chainNetMonDom5,480 microsat,20 netBosTau7,280 netBosTau7,480 netHg19,278 netHg19,477 netMm9,278 netMm9,477 netMonDom5,278 netMonDom5,477 user est,390 intronEst,471 mrna,336 xenoMrna,411 users xenoRefGene,148 uses nscanGene,101 rmsk,79 tRNAs,30 using augustusGene,294 blastHg18KG,52 blastHg18KG,76 blastHg18KG,88 chainBosTau7,76 chainBosTau7,605 chainBosTau7,764 chainHg19,74 chainHg19,602 chainHg19,761 chainMm9,74 chainMm9,602 chainMm9,761 chainMonDom5,74 chainMonDom5,602 chainMonDom5,761 chainNetBosTau7,79 chainNetBosTau7,608 chainNetBosTau7,767 chainNetHg19,77 chainNetHg19,605 chainNetHg19,764 chainNetMm9,77 chainNetMm9,605 chainNetMm9,764 chainNetMonDom5,77 chainNetMonDom5,605 chainNetMonDom5,764 cpgIslandExt,516 cpgIslandExt,589 cpgIslandExtUnmasked,519 cpgIslandExtUnmasked,592 cpgIslandSuper,516 cpgIslandSuper,589 ensGene,71 est,652 intronEst,733 microsat,90 mrna,392 nestedRepeats,43 nestedRepeats,104 nestedRepeats,283 netBosTau7,76 netBosTau7,605 netBosTau7,764 netHg19,74 netHg19,602 netHg19,761 netMm9,74 netMm9,602 netMm9,761 netMonDom5,74 netMonDom5,602 netMonDom5,761 nscanGene,15 nscanGene,163 nscanGene,208 rmsk,15 rmsk,290 tRNAs,21 tRNAs,401 xenoMrna,467 xenoRefGene,224 usually est,37 gap,122 intronEst,49 nestedRepeats,192 tRNAs,239 tRNAs,307 utilities blastHg18KG,185 utils cpgIslandExt,565 cpgIslandExtUnmasked,568 cpgIslandSuper,565 v ensGene,192 v.1.23 tRNAs,23 v3.1 augustusGene,7 valid est,211 intronEst,292 mrna,157 xenoMrna,232 validate xenoRefGene,151 validated numtS,599 numtSAssembled,601 numtSMitochondrion,603 numtSeq2012,602 value est,282 intronEst,363 mrna,228 xenoMrna,303 van nscanGene,249 variation bamAllNumtSSorted,8 microsat,7 nestedRepeats,11 numtS,4 numtSAssembled,6 numtSMitochondrion,8 numtSeq2012,7 rmsk,6 simpleRepeat,8 variety gc5Base,45 vb chainBosTau7,1028 chainHg19,1025 chainMm9,1025 chainMonDom5,1025 chainNetBosTau7,1031 chainNetHg19,1028 chainNetMm9,1028 chainNetMonDom5,1028 netBosTau7,1028 netHg19,1025 netMm9,1025 netMonDom5,1025 vector est,467 intronEst,548 version augustusGene,23 augustusGene,263 cpgIslandExt,170 cpgIslandExt,193 cpgIslandExt,199 cpgIslandExt,209 cpgIslandExtUnmasked,173 cpgIslandExtUnmasked,196 cpgIslandExtUnmasked,202 cpgIslandExtUnmasked,212 cpgIslandSuper,170 cpgIslandSuper,193 cpgIslandSuper,199 cpgIslandSuper,209 ensGene,10 rmsk,58 versions augustusGene,279 ensGene,140 nestedRepeats,251 nestedRepeats,267 vertebrate cpgIslandExt,59 cpgIslandExt,611 cpgIslandExtUnmasked,62 cpgIslandExtUnmasked,614 cpgIslandSuper,59 cpgIslandSuper,611 tRNAs,160 xenoMrna,18 vertebrates augustusGene,209 cpgIslandExt,25 cpgIslandExtUnmasked,28 cpgIslandSuper,25 very est,673 intronEst,754 vienna nscanGene,156 view chainBosTau7,457 chainHg19,454 chainMm9,454 chainMonDom5,454 chainNetBosTau7,460 chainNetHg19,457 chainNetMm9,457 chainNetMonDom5,457 cpgIslandExt,206 cpgIslandExtUnmasked,209 cpgIslandSuper,206 est,207 intronEst,288 mrna,153 netBosTau7,457 netHg19,454 netMm9,454 netMonDom5,454 xenoMrna,228 viewed est,635 gold,68 intronEst,716 visibility cpgIslandExt,212 cpgIslandExtUnmasked,215 cpgIslandSuper,212 visible cpgIslandExt,188 cpgIslandExtUnmasked,191 cpgIslandSuper,188 w blastHg18KG,156 blastHg18KG,158 chainBosTau7,1030 chainBosTau7,1050 chainBosTau7,1098 chainHg19,1027 chainHg19,1047 chainHg19,1095 chainMm9,1027 chainMm9,1047 chainMm9,1095 chainMonDom5,1027 chainMonDom5,1047 chainMonDom5,1095 chainNetBosTau7,1033 chainNetBosTau7,1053 chainNetBosTau7,1101 chainNetHg19,1030 chainNetHg19,1050 chainNetHg19,1098 chainNetMm9,1030 chainNetMm9,1050 chainNetMm9,1098 chainNetMonDom5,1030 chainNetMonDom5,1050 chainNetMonDom5,1098 netBosTau7,1030 netBosTau7,1050 netBosTau7,1098 netHg19,1027 netHg19,1047 netHg19,1095 netMm9,1027 netMm9,1047 netMm9,1095 netMonDom5,1027 netMonDom5,1047 netMonDom5,1095 waack augustusGene,318 was augustusGene,230 augustusGene,245 augustusGene,264 augustusGene,280 blastHg18KG,178 chainBosTau7,649 chainBosTau7,667 chainBosTau7,788 chainBosTau7,833 chainBosTau7,841 chainBosTau7,861 chainBosTau7,873 chainBosTau7,898 chainBosTau7,916 chainBosTau7,951 chainHg19,646 chainHg19,664 chainHg19,785 chainHg19,830 chainHg19,838 chainHg19,858 chainHg19,870 chainHg19,895 chainHg19,913 chainHg19,948 chainMm9,646 chainMm9,664 chainMm9,785 chainMm9,830 chainMm9,838 chainMm9,858 chainMm9,870 chainMm9,895 chainMm9,913 chainMm9,948 chainMonDom5,646 chainMonDom5,664 chainMonDom5,785 chainMonDom5,830 chainMonDom5,838 chainMonDom5,858 chainMonDom5,870 chainMonDom5,895 chainMonDom5,913 chainMonDom5,948 chainNetBosTau7,652 chainNetBosTau7,670 chainNetBosTau7,791 chainNetBosTau7,836 chainNetBosTau7,844 chainNetBosTau7,864 chainNetBosTau7,876 chainNetBosTau7,901 chainNetBosTau7,919 chainNetBosTau7,954 chainNetHg19,649 chainNetHg19,667 chainNetHg19,788 chainNetHg19,833 chainNetHg19,841 chainNetHg19,861 chainNetHg19,873 chainNetHg19,898 chainNetHg19,916 chainNetHg19,951 chainNetMm9,649 chainNetMm9,667 chainNetMm9,788 chainNetMm9,833 chainNetMm9,841 chainNetMm9,861 chainNetMm9,873 chainNetMm9,898 chainNetMm9,916 chainNetMm9,951 chainNetMonDom5,649 chainNetMonDom5,667 chainNetMonDom5,788 chainNetMonDom5,833 chainNetMonDom5,841 chainNetMonDom5,861 chainNetMonDom5,873 chainNetMonDom5,898 chainNetMonDom5,916 chainNetMonDom5,951 cpgIslandExt,255 cpgIslandExt,307 cpgIslandExt,587 cpgIslandExtUnmasked,258 cpgIslandExtUnmasked,310 cpgIslandExtUnmasked,590 cpgIslandSuper,255 cpgIslandSuper,307 cpgIslandSuper,587 est,695 est,724 intronEst,776 intronEst,808 microsat,108 mrna,411 mrna,441 netBosTau7,649 netBosTau7,667 netBosTau7,788 netBosTau7,833 netBosTau7,841 netBosTau7,861 netBosTau7,873 netBosTau7,898 netBosTau7,916 netBosTau7,951 netHg19,646 netHg19,664 netHg19,785 netHg19,830 netHg19,838 netHg19,858 netHg19,870 netHg19,895 netHg19,913 netHg19,948 netMm9,646 netMm9,664 netMm9,785 netMm9,830 netMm9,838 netMm9,858 netMm9,870 netMm9,895 netMm9,913 netMm9,948 netMonDom5,646 netMonDom5,664 netMonDom5,785 netMonDom5,830 netMonDom5,838 netMonDom5,858 netMonDom5,870 netMonDom5,895 netMonDom5,913 netMonDom5,948 numtS,438 numtSAssembled,440 numtSMitochondrion,442 numtSeq2012,441 rmsk,12 rmsk,262 simpleRepeat,68 xenoMrna,485 xenoMrna,516 xenoRefGene,251 xenoRefGene,280 washington nscanGene,29 nscanGene,124 ways gc5Base,47 we ensGene,153 rmsk,122 webb chainBosTau7,930 chainBosTau7,967 chainHg19,927 chainHg19,964 chainMm9,927 chainMm9,964 chainMonDom5,927 chainMonDom5,964 chainNetBosTau7,933 chainNetBosTau7,970 chainNetHg19,930 chainNetHg19,967 chainNetMm9,930 chainNetMm9,967 chainNetMonDom5,930 chainNetMonDom5,967 netBosTau7,930 netBosTau7,967 netHg19,927 netHg19,964 netMm9,927 netMm9,964 netMonDom5,927 netMonDom5,964 weekly xenoRefGene,40 weight tRNAs,493 well augustusGene,78 cpgIslandExt,549 cpgIslandExtUnmasked,552 cpgIslandSuper,549 est,539 est,562 intronEst,620 intronEst,643 nscanGene,76 numtS,285 numtSAssembled,287 numtSMitochondrion,289 numtSeq2012,288 rmsk,54 were augustusGene,50 augustusGene,66 augustusGene,125 augustusGene,149 augustusGene,182 blastHg18KG,46 blastHg18KG,70 blastHg18KG,85 blastHg18KG,112 blastHg18KG,134 blastHg18KG,191 chainBosTau7,578 chainBosTau7,586 chainBosTau7,593 chainBosTau7,600 chainBosTau7,612 chainBosTau7,685 chainBosTau7,759 chainBosTau7,939 chainBosTau7,983 chainBosTau7,997 chainHg19,575 chainHg19,583 chainHg19,590 chainHg19,597 chainHg19,609 chainHg19,682 chainHg19,756 chainHg19,936 chainHg19,980 chainHg19,994 chainMm9,575 chainMm9,583 chainMm9,590 chainMm9,597 chainMm9,609 chainMm9,682 chainMm9,756 chainMm9,936 chainMm9,980 chainMm9,994 chainMonDom5,575 chainMonDom5,583 chainMonDom5,590 chainMonDom5,597 chainMonDom5,609 chainMonDom5,682 chainMonDom5,756 chainMonDom5,936 chainMonDom5,980 chainMonDom5,994 chainNetBosTau7,581 chainNetBosTau7,589 chainNetBosTau7,596 chainNetBosTau7,603 chainNetBosTau7,615 chainNetBosTau7,688 chainNetBosTau7,762 chainNetBosTau7,942 chainNetBosTau7,986 chainNetBosTau7,1000 chainNetHg19,578 chainNetHg19,586 chainNetHg19,593 chainNetHg19,600 chainNetHg19,612 chainNetHg19,685 chainNetHg19,759 chainNetHg19,939 chainNetHg19,983 chainNetHg19,997 chainNetMm9,578 chainNetMm9,586 chainNetMm9,593 chainNetMm9,600 chainNetMm9,612 chainNetMm9,685 chainNetMm9,759 chainNetMm9,939 chainNetMm9,983 chainNetMm9,997 chainNetMonDom5,578 chainNetMonDom5,586 chainNetMonDom5,593 chainNetMonDom5,600 chainNetMonDom5,612 chainNetMonDom5,685 chainNetMonDom5,759 chainNetMonDom5,939 chainNetMonDom5,983 chainNetMonDom5,997 cpgIslandExt,227 cpgIslandExtUnmasked,230 cpgIslandSuper,227 ensGene,20 est,589 est,647 est,719 gap,155 gc5Base,79 intronEst,670 intronEst,728 mrna,387 mrna,435 netBosTau7,578 netBosTau7,586 netBosTau7,593 netBosTau7,600 netBosTau7,612 netBosTau7,685 netBosTau7,759 netBosTau7,939 netBosTau7,983 netBosTau7,997 netHg19,575 netHg19,583 netHg19,590 netHg19,597 netHg19,609 netHg19,682 netHg19,756 netHg19,936 netHg19,980 netHg19,994 netMm9,575 netMm9,583 netMm9,590 netMm9,597 netMm9,609 netMm9,682 netMm9,756 netMm9,936 netMm9,980 netMm9,994 netMonDom5,575 netMonDom5,583 netMonDom5,590 netMonDom5,597 netMonDom5,609 netMonDom5,682 netMonDom5,756 netMonDom5,936 netMonDom5,980 netMonDom5,994 numtS,403 numtS,470 numtSAssembled,405 numtSAssembled,472 numtSMitochondrion,407 numtSMitochondrion,474 numtSeq2012,406 numtSeq2012,473 tRNAs,345 xenoMrna,461 xenoMrna,510 xenoRefGene,218 xenoRefGene,234 xenoRefGene,275 wgs gold,46 what tRNAs,112 wheeler est,779 intronEst,863 mrna,496 xenoMrna,571 when augustusGene,188 augustusGene,238 chainBosTau7,408 chainHg19,405 chainMm9,405 chainMonDom5,405 chainNetBosTau7,411 chainNetHg19,408 chainNetMm9,408 chainNetMonDom5,408 est,143 est,153 est,680 gold,97 intronEst,33 intronEst,224 intronEst,234 intronEst,761 mrna,89 mrna,99 mrna,396 netBosTau7,408 netHg19,405 netMm9,405 netMonDom5,405 numtS,297 numtSAssembled,299 numtSMitochondrion,301 numtSeq2012,300 tRNAs,355 xenoMrna,164 xenoMrna,174 xenoMrna,470 xenoRefGene,236 where chainBosTau7,193 chainHg19,191 chainMm9,191 chainMonDom5,191 chainNetBosTau7,196 chainNetHg19,194 chainNetMm9,194 chainNetMonDom5,194 cpgIslandExt,151 cpgIslandExt,393 cpgIslandExtUnmasked,154 cpgIslandExtUnmasked,396 cpgIslandSuper,151 cpgIslandSuper,393 gold,83 netBosTau7,193 netHg19,191 netMm9,191 netMonDom5,191 whether chainBosTau7,857 chainHg19,854 chainMm9,854 chainMonDom5,854 chainNetBosTau7,860 chainNetHg19,857 chainNetMm9,857 chainNetMonDom5,857 netBosTau7,857 netHg19,854 netMm9,854 netMonDom5,854 tRNAs,138 which augustusGene,159 augustusGene,227 chainBosTau7,325 chainBosTau7,616 chainBosTau7,822 chainHg19,322 chainHg19,613 chainHg19,819 chainMm9,322 chainMm9,613 chainMm9,819 chainMonDom5,322 chainMonDom5,613 chainMonDom5,819 chainNetBosTau7,328 chainNetBosTau7,619 chainNetBosTau7,825 chainNetHg19,325 chainNetHg19,616 chainNetHg19,822 chainNetMm9,325 chainNetMm9,616 chainNetMm9,822 chainNetMonDom5,325 chainNetMonDom5,616 chainNetMonDom5,822 cpgIslandExt,85 cpgIslandExtUnmasked,88 cpgIslandSuper,85 est,103 est,230 est,496 est,521 est,667 intronEst,184 intronEst,311 intronEst,577 intronEst,602 intronEst,748 mrna,176 nestedRepeats,31 nestedRepeats,87 netBosTau7,325 netBosTau7,616 netBosTau7,822 netHg19,322 netHg19,613 netHg19,819 netMm9,322 netMm9,613 netMm9,819 netMonDom5,322 netMonDom5,613 netMonDom5,819 numtS,385 numtSAssembled,387 numtSMitochondrion,389 numtSeq2012,388 rmsk,21 rmsk,64 rmsk,158 rmsk,171 rmsk,197 simpleRepeat,27 xenoMrna,251 while chainBosTau7,216 chainHg19,214 chainMm9,214 chainMonDom5,214 chainNetBosTau7,219 chainNetHg19,217 chainNetMm9,217 chainNetMonDom5,217 netBosTau7,216 netHg19,214 netMm9,214 netMonDom5,214 numtS,456 numtSAssembled,458 numtSMitochondrion,460 numtSeq2012,459 white gap,85 whole chainBosTau7,465 chainHg19,462 chainMm9,462 chainMonDom5,462 chainNetBosTau7,468 chainNetHg19,465 chainNetMm9,465 chainNetMonDom5,465 cpgIslandExt,167 cpgIslandExtUnmasked,170 cpgIslandSuper,167 netBosTau7,465 netHg19,462 netMm9,462 netMonDom5,462 whole-genome gold,44 whose xenoMrna,78 width cpgIslandExt,430 cpgIslandExt,467 cpgIslandExt,470 cpgIslandExt,478 cpgIslandExtUnmasked,433 cpgIslandExtUnmasked,470 cpgIslandExtUnmasked,473 cpgIslandExtUnmasked,481 cpgIslandSuper,430 cpgIslandSuper,467 cpgIslandSuper,470 cpgIslandSuper,478 wildcards est,268 intronEst,349 mrna,214 xenoMrna,289 will est,301 est,319 est,348 est,365 intronEst,382 intronEst,400 intronEst,429 intronEst,446 mrna,247 mrna,265 mrna,294 mrna,311 rmsk,277 rmsk,283 xenoMrna,322 xenoMrna,340 xenoMrna,369 xenoMrna,386 windows gc5Base,7 gc5Base,28 wish est,232 intronEst,313 mrna,178 xenoMrna,253 xenoRefGene,205 with augustusGene,127 augustusGene,322 blastHg18KG,48 blastHg18KG,72 chainBosTau7,43 chainBosTau7,207 chainBosTau7,218 chainBosTau7,588 chainBosTau7,700 chainBosTau7,776 chainBosTau7,900 chainBosTau7,932 chainBosTau7,964 chainBosTau7,1101 chainHg19,42 chainHg19,205 chainHg19,216 chainHg19,585 chainHg19,697 chainHg19,773 chainHg19,897 chainHg19,929 chainHg19,961 chainHg19,1098 chainMm9,42 chainMm9,205 chainMm9,216 chainMm9,585 chainMm9,697 chainMm9,773 chainMm9,897 chainMm9,929 chainMm9,961 chainMm9,1098 chainMonDom5,42 chainMonDom5,205 chainMonDom5,216 chainMonDom5,585 chainMonDom5,697 chainMonDom5,773 chainMonDom5,897 chainMonDom5,929 chainMonDom5,961 chainMonDom5,1098 chainNetBosTau7,46 chainNetBosTau7,210 chainNetBosTau7,221 chainNetBosTau7,591 chainNetBosTau7,703 chainNetBosTau7,779 chainNetBosTau7,903 chainNetBosTau7,935 chainNetBosTau7,967 chainNetBosTau7,1104 chainNetHg19,45 chainNetHg19,208 chainNetHg19,219 chainNetHg19,588 chainNetHg19,700 chainNetHg19,776 chainNetHg19,900 chainNetHg19,932 chainNetHg19,964 chainNetHg19,1101 chainNetMm9,45 chainNetMm9,208 chainNetMm9,219 chainNetMm9,588 chainNetMm9,700 chainNetMm9,776 chainNetMm9,900 chainNetMm9,932 chainNetMm9,964 chainNetMm9,1101 chainNetMonDom5,45 chainNetMonDom5,208 chainNetMonDom5,219 chainNetMonDom5,588 chainNetMonDom5,700 chainNetMonDom5,776 chainNetMonDom5,900 chainNetMonDom5,932 chainNetMonDom5,964 chainNetMonDom5,1101 cpgIslandExt,19 cpgIslandExt,39 cpgIslandExt,141 cpgIslandExt,540 cpgIslandExtUnmasked,22 cpgIslandExtUnmasked,42 cpgIslandExtUnmasked,144 cpgIslandExtUnmasked,543 cpgIslandSuper,19 cpgIslandSuper,39 cpgIslandSuper,141 cpgIslandSuper,540 est,102 est,498 est,636 est,672 est,715 gap,33 gc5Base,35 gold,43 intronEst,183 intronEst,579 intronEst,717 intronEst,753 intronEst,796 microsat,69 microsat,76 mrna,431 nestedRepeats,133 netBosTau7,43 netBosTau7,207 netBosTau7,218 netBosTau7,588 netBosTau7,700 netBosTau7,776 netBosTau7,900 netBosTau7,932 netBosTau7,964 netBosTau7,1101 netHg19,42 netHg19,205 netHg19,216 netHg19,585 netHg19,697 netHg19,773 netHg19,897 netHg19,929 netHg19,961 netHg19,1098 netMm9,42 netMm9,205 netMm9,216 netMm9,585 netMm9,697 netMm9,773 netMm9,897 netMm9,929 netMm9,961 netMm9,1098 netMonDom5,42 netMonDom5,205 netMonDom5,216 netMonDom5,585 netMonDom5,697 netMonDom5,773 netMonDom5,897 netMonDom5,929 netMonDom5,961 netMonDom5,1098 nscanGene,47 nscanGene,108 numtS,163 numtS,213 numtS,345 numtS,382 numtS,391 numtS,440 numtSAssembled,165 numtSAssembled,215 numtSAssembled,347 numtSAssembled,384 numtSAssembled,393 numtSAssembled,442 numtSMitochondrion,167 numtSMitochondrion,217 numtSMitochondrion,349 numtSMitochondrion,386 numtSMitochondrion,395 numtSMitochondrion,444 numtSeq2012,166 numtSeq2012,216 numtSeq2012,348 numtSeq2012,385 numtSeq2012,394 numtSeq2012,443 rmsk,111 rmsk,225 simpleRepeat,52 tRNAs,7 tRNAs,58 tRNAs,85 tRNAs,119 tRNAs,162 tRNAs,177 tRNAs,197 tRNAs,242 xenoMrna,506 xenoRefGene,227 xenoRefGene,271 within est,136 est,549 est,704 gold,106 intronEst,217 intronEst,630 intronEst,785 mrna,82 mrna,420 numtS,387 numtSAssembled,389 numtSMitochondrion,391 numtSeq2012,390 simpleRepeat,37 xenoMrna,157 xenoMrna,495 xenoRefGene,82 xenoRefGene,260 wj chainBosTau7,1044 chainBosTau7,1086 chainHg19,1041 chainHg19,1083 chainMm9,1041 chainMm9,1083 chainMonDom5,1041 chainMonDom5,1083 chainNetBosTau7,1047 chainNetBosTau7,1089 chainNetHg19,1044 chainNetHg19,1086 chainNetMm9,1044 chainNetMm9,1086 chainNetMonDom5,1044 chainNetMonDom5,1086 est,798 intronEst,882 mrna,515 netBosTau7,1044 netBosTau7,1086 netHg19,1041 netHg19,1083 netMm9,1041 netMm9,1083 netMonDom5,1041 netMonDom5,1083 xenoMrna,590 xenoRefGene,301 worldwide est,741 intronEst,825 mrna,458 xenoMrna,533 xenoRefGene,291 wortman nscanGene,186 would cpgIslandExt,184 cpgIslandExtUnmasked,187 cpgIslandSuper,184 ensGene,154 written blastHg18KG,179 blastHg18KG,192 microsat,109 simpleRepeat,69 www.repeatmasker.org nestedRepeats,333 rmsk,356 y ensGene,184 yap chainBosTau7,1027 chainHg19,1024 chainMm9,1024 chainMonDom5,1024 chainNetBosTau7,1030 chainNetHg19,1027 chainNetMm9,1027 chainNetMonDom5,1027 netBosTau7,1027 netHg19,1024 netMm9,1024 netMonDom5,1024 you est,231 intronEst,312 mrna,177 rmsk,115 xenoMrna,252 xenoRefGene,204 younger nestedRepeats,94 z chainBosTau7,1090 chainHg19,1087 chainMm9,1087 chainMonDom5,1087 chainNetBosTau7,1093 chainNetHg19,1090 chainNetMm9,1090 chainNetMonDom5,1090 netBosTau7,1090 netHg19,1087 netMm9,1087 netMonDom5,1087 zebrafish augustusGene,202 augustusGene,278 zhang chainBosTau7,928 chainBosTau7,1089 chainHg19,925 chainHg19,1086 chainMm9,925 chainMm9,1086 chainMonDom5,925 chainMonDom5,1086 chainNetBosTau7,931 chainNetBosTau7,1092 chainNetHg19,928 chainNetHg19,1089 chainNetMm9,928 chainNetMm9,1089 chainNetMonDom5,928 chainNetMonDom5,1089 netBosTau7,928 netBosTau7,1089 netHg19,925 netHg19,1086 netMm9,925 netMm9,1086 netMonDom5,925 netMonDom5,1086 zheng chainBosTau7,927 chainHg19,924 chainMm9,924 chainMonDom5,924 chainNetBosTau7,930 chainNetHg19,927 chainNetMm9,927 chainNetMonDom5,927 netBosTau7,927 netHg19,924 netMm9,924 netMonDom5,924 zimmermann nscanGene,148 zone tRNAs,208