0 nestedRepeats,237 transMapEnsemblV5,672 transMapEstV5,641 transMapRefSeqV5,641 transMapRnaV5,641 transMapV5,747 uniprot,1822 0.01 cpgIslandExt,473 cpgIslandExtUnmasked,476 cpgIslandSuper,473 0.0f cpgIslandExt,449 cpgIslandExtUnmasked,452 cpgIslandSuper,449 0.1 refSeqComposite,1274 0.1f cpgIslandExt,451 cpgIslandExtUnmasked,454 cpgIslandSuper,451 0.2 augustusGene,136 0.5 augustusGene,138 mrna,425 transMapEnsemblV5,226 transMapEnsemblV5,361 transMapEstV5,195 transMapEstV5,330 transMapRefSeqV5,195 transMapRefSeqV5,330 transMapRnaV5,195 transMapRnaV5,330 transMapV5,301 transMapV5,436 xenoRefGene,264 0.6 cpgIslandExt,276 cpgIslandExtUnmasked,279 cpgIslandSuper,276 000 transMapV5,110 1 HLTOGAannotvHg38v1,239 augustusGene,310 chainHg38,391 chainHg38,522 chainHg38,714 chainHg38,1113 chainMm10,391 chainMm10,522 chainMm10,714 chainMm10,1113 chainNetHg38,394 chainNetHg38,525 chainNetHg38,717 chainNetHg38,1116 chainNetMm10,394 chainNetMm10,525 chainNetMm10,717 chainNetMm10,1116 chainNetTarSyr2,394 chainNetTarSyr2,525 chainNetTarSyr2,717 chainNetTarSyr2,1116 chainTarSyr2,391 chainTarSyr2,522 chainTarSyr2,714 chainTarSyr2,1113 cpgIslandExt,245 cpgIslandExt,429 cpgIslandExt,458 cpgIslandExt,485 cpgIslandExtUnmasked,248 cpgIslandExtUnmasked,432 cpgIslandExtUnmasked,461 cpgIslandExtUnmasked,488 cpgIslandSuper,245 cpgIslandSuper,429 cpgIslandSuper,458 cpgIslandSuper,485 ensGene,200 ensGene,202 genscan,227 mrna,509 netHg38,391 netHg38,522 netHg38,714 netHg38,1113 netMm10,391 netMm10,522 netMm10,714 netMm10,1113 netTarSyr2,391 netTarSyr2,522 netTarSyr2,714 netTarSyr2,1113 refSeqComposite,1817 transMapEnsemblV5,781 transMapEstV5,750 transMapRefSeqV5,750 transMapRnaV5,750 transMapV5,856 uniprot,1110 uniprot,1314 uniprot,1346 uniprot,1490 uniprot,1927 xenoMrna,499 xenoMrna,583 xenoRefGene,387 1.0 transMapEnsemblV5,369 transMapEstV5,338 transMapRefSeqV5,338 transMapRnaV5,338 transMapV5,444 10 uniprot,1928 100 augustusGene,134 chainHg38,1081 chainMm10,1081 chainNetHg38,1084 chainNetMm10,1084 chainNetTarSyr2,1084 chainTarSyr2,1081 gap,137 microsat,70 nestedRepeats,230 netHg38,1081 netMm10,1081 netTarSyr2,1081 100.0 cpgIslandExt,474 cpgIslandExtUnmasked,477 cpgIslandSuper,474 1000 chainHg38,753 chainMm10,753 chainNetHg38,756 chainNetMm10,756 chainNetTarSyr2,756 chainTarSyr2,753 nestedRepeats,238 netHg38,753 netMm10,753 netTarSyr2,753 1000-2000 augustusGene,161 1000000 transMapEnsemblV5,674 transMapEstV5,643 transMapRefSeqV5,643 transMapRnaV5,643 transMapV5,749 uniprot,1824 103-7 chainHg38,1114 chainMm10,1114 chainNetHg38,1117 chainNetMm10,1117 chainNetTarSyr2,1117 chainTarSyr2,1114 netHg38,1114 netMm10,1114 netTarSyr2,1114 10607616 nestedRepeats,394 rmsk,417 10973072 nestedRepeats,361 rmsk,384 11 chainHg38,710 chainHg38,717 chainMm10,710 chainMm10,717 chainNetHg38,713 chainNetHg38,720 chainNetMm10,713 chainNetMm10,720 chainNetTarSyr2,713 chainNetTarSyr2,720 chainTarSyr2,710 chainTarSyr2,717 netHg38,710 netHg38,717 netMm10,710 netMm10,717 netTarSyr2,710 netTarSyr2,717 111 chainHg38,712 chainHg38,718 chainMm10,712 chainMm10,718 chainNetHg38,715 chainNetHg38,721 chainNetMm10,715 chainNetMm10,721 chainNetTarSyr2,715 chainNetTarSyr2,721 chainTarSyr2,712 chainTarSyr2,718 netHg38,712 netHg38,718 netMm10,712 netMm10,718 netTarSyr2,712 netTarSyr2,718 11484-9 chainHg38,1083 chainMm10,1083 chainNetHg38,1086 chainNetMm10,1086 chainNetTarSyr2,1086 chainTarSyr2,1083 netHg38,1083 netMm10,1083 netTarSyr2,1083 115-26 chainHg38,1045 chainMm10,1045 chainNetHg38,1048 chainNetMm10,1048 chainNetTarSyr2,1048 chainTarSyr2,1045 netHg38,1045 netMm10,1045 netTarSyr2,1045 11752248 ensGene,205 117900 chainHg38,734 chainHg38,746 chainMm10,734 chainMm10,746 chainNetHg38,737 chainNetHg38,749 chainNetMm10,737 chainNetMm10,749 chainNetTarSyr2,737 chainNetTarSyr2,749 chainTarSyr2,734 chainTarSyr2,746 netHg38,734 netHg38,746 netMm10,734 netMm10,746 netTarSyr2,734 netTarSyr2,746 118300 chainHg38,758 chainMm10,758 chainNetHg38,761 chainNetMm10,761 chainNetTarSyr2,761 chainTarSyr2,758 netHg38,758 netMm10,758 netTarSyr2,758 11928468 chainHg38,1047 chainMm10,1047 chainNetHg38,1050 chainNetMm10,1050 chainNetTarSyr2,1050 chainTarSyr2,1047 netHg38,1047 netMm10,1047 netTarSyr2,1047 11932250 mrna,533 refSeqComposite,1747 xenoMrna,607 xenoRefGene,317 12 mrna,529 refSeqComposite,1743 transMapEnsemblV5,751 transMapEnsemblV5,817 transMapEstV5,720 transMapEstV5,786 transMapRefSeqV5,720 transMapRefSeqV5,786 transMapRnaV5,720 transMapRnaV5,786 transMapV5,826 transMapV5,892 xenoMrna,603 xenoRefGene,313 12111 chainHg38,720 chainMm10,720 chainNetHg38,723 chainNetMm10,723 chainNetTarSyr2,723 chainTarSyr2,720 netHg38,720 netMm10,720 netTarSyr2,720 12529312 chainHg38,1116 chainMm10,1116 chainNetHg38,1119 chainNetMm10,1119 chainNetTarSyr2,1119 chainTarSyr2,1116 netHg38,1116 netMm10,1116 netTarSyr2,1116 127-163 genscan,206 13 chainHg38,1112 chainMm10,1112 chainNetHg38,1115 chainNetMm10,1115 chainNetTarSyr2,1115 chainTarSyr2,1112 netHg38,1112 netMm10,1112 netTarSyr2,1112 1300 chainHg38,754 chainMm10,754 chainNetHg38,757 chainNetMm10,757 chainNetTarSyr2,757 chainTarSyr2,754 netHg38,754 netMm10,754 netTarSyr2,754 134-41 windowmaskerSdust,112 14500911 chainHg38,1085 chainMm10,1085 chainNetHg38,1088 chainNetMm10,1088 chainNetTarSyr2,1088 chainTarSyr2,1085 netHg38,1085 netMm10,1085 netTarSyr2,1085 14534192 augustusGene,340 14681350 mrna,515 xenoMrna,589 148 gap,133 15 microsat,30 microsat,79 microsat,130 refSeqComposite,1246 simpleRepeat,90 windowmaskerSdust,109 xenoRefGene,236 151 gold,153 15108278 uniprot,2051 152111 chainHg38,723 chainMm10,723 chainNetHg38,726 chainNetMm10,726 chainNetTarSyr2,726 chainTarSyr2,723 netHg38,723 netMm10,723 netTarSyr2,723 15608248 refSeqComposite,1823 xenoRefGene,393 16 nestedRepeats,357 rmsk,380 16287941 windowmaskerSdust,114 17 cpgIslandExt,241 cpgIslandExtUnmasked,244 cpgIslandSuper,241 transMapEnsemblV5,750 transMapEstV5,719 transMapRefSeqV5,719 transMapRnaV5,719 transMapV5,825 1763-73 transMapEnsemblV5,752 transMapEstV5,721 transMapRefSeqV5,721 transMapRnaV5,721 transMapV5,827 17989246 transMapEnsemblV5,754 transMapEstV5,723 transMapRefSeqV5,723 transMapRnaV5,723 transMapV5,829 18085818 transMapEnsemblV5,820 transMapEstV5,789 transMapRefSeqV5,789 transMapRnaV5,789 transMapV5,895 18218656 augustusGene,315 transMapEnsemblV5,786 transMapEstV5,755 transMapRefSeqV5,755 transMapRnaV5,755 transMapV5,861 19 augustusGene,335 196 cpgIslandExt,619 cpgIslandExtUnmasked,622 cpgIslandSuper,619 1987 cpgIslandExt,379 cpgIslandExt,616 cpgIslandExtUnmasked,382 cpgIslandExtUnmasked,619 cpgIslandSuper,379 cpgIslandSuper,616 1996 nestedRepeats,410 rmsk,433 1996-2010 nestedRepeats,334 rmsk,357 1997 genscan,149 genscan,223 1998 genscan,167 genscan,204 1999 microsat,103 microsat,128 nestedRepeats,388 rmsk,411 simpleRepeat,65 simpleRepeat,88 2 augustusGene,142 augustusGene,337 chainHg38,425 chainHg38,430 chainHg38,715 chainMm10,425 chainMm10,430 chainMm10,715 chainNetHg38,428 chainNetHg38,433 chainNetHg38,718 chainNetMm10,428 chainNetMm10,433 chainNetMm10,718 chainNetTarSyr2,428 chainNetTarSyr2,433 chainNetTarSyr2,718 chainTarSyr2,425 chainTarSyr2,430 chainTarSyr2,715 cpgIslandExt,421 cpgIslandExt,426 cpgIslandExt,428 cpgIslandExt,434 cpgIslandExt,460 cpgIslandExt,475 cpgIslandExt,620 cpgIslandExtUnmasked,424 cpgIslandExtUnmasked,429 cpgIslandExtUnmasked,431 cpgIslandExtUnmasked,437 cpgIslandExtUnmasked,463 cpgIslandExtUnmasked,478 cpgIslandExtUnmasked,623 cpgIslandSuper,421 cpgIslandSuper,426 cpgIslandSuper,428 cpgIslandSuper,434 cpgIslandSuper,460 cpgIslandSuper,475 cpgIslandSuper,620 microsat,66 microsat,132 netHg38,425 netHg38,430 netHg38,715 netMm10,425 netMm10,430 netMm10,715 netTarSyr2,425 netTarSyr2,430 netTarSyr2,715 simpleRepeat,92 uniprot,1121 uniprot,1331 windowmaskerSdust,111 2-3 uniprot,1572 2.0 HLTOGAannotvHg38v1,103 20 chainHg38,1082 chainMm10,1082 chainNetHg38,1085 chainNetMm10,1085 chainNetTarSyr2,1085 chainTarSyr2,1082 cpgIslandExt,618 cpgIslandExtUnmasked,621 cpgIslandSuper,618 netHg38,1082 netMm10,1082 netTarSyr2,1082 transMapEnsemblV5,377 transMapEstV5,346 transMapRefSeqV5,346 transMapRnaV5,346 transMapV5,452 200 cpgIslandExt,271 cpgIslandExtUnmasked,274 cpgIslandSuper,271 2000 nestedRepeats,63 nestedRepeats,355 rmsk,99 rmsk,378 2002 chainHg38,1044 chainMm10,1044 chainNetHg38,1047 chainNetMm10,1047 chainNetTarSyr2,1047 chainTarSyr2,1044 ensGene,47 ensGene,198 mrna,527 netHg38,1044 netMm10,1044 netTarSyr2,1044 refSeqComposite,1741 xenoMrna,601 xenoRefGene,311 2003 augustusGene,333 chainHg38,1078 chainHg38,1110 chainMm10,1078 chainMm10,1110 chainNetHg38,1081 chainNetHg38,1113 chainNetMm10,1081 chainNetMm10,1113 chainNetTarSyr2,1081 chainNetTarSyr2,1113 chainTarSyr2,1078 chainTarSyr2,1110 netHg38,1078 netHg38,1110 netMm10,1078 netMm10,1110 netTarSyr2,1078 netTarSyr2,1110 2004 mrna,507 uniprot,2045 xenoMrna,581 2005 refSeqComposite,1815 xenoRefGene,385 2006 windowmaskerSdust,107 2007 chainHg38,1017 chainMm10,1017 chainNetHg38,1020 chainNetMm10,1020 chainNetTarSyr2,1020 chainTarSyr2,1017 netHg38,1017 netMm10,1017 netTarSyr2,1017 transMapEnsemblV5,748 transMapEnsemblV5,814 transMapEstV5,717 transMapEstV5,783 transMapRefSeqV5,717 transMapRefSeqV5,783 transMapRnaV5,717 transMapRnaV5,783 transMapV5,823 transMapV5,889 2008 augustusGene,308 transMapEnsemblV5,779 transMapEstV5,748 transMapRefSeqV5,748 transMapRnaV5,748 transMapV5,854 2011 chainMm10,5 chainMm10,67 chainMm10,307 chainNetMm10,6 chainNetMm10,70 chainNetMm10,310 chainNetMm10Viewchain,4 chainNetMm10Viewnet,4 gap,16 gold,18 netMm10,5 netMm10,67 netMm10,307 2012 uniprot,2000 2013 chainHg38,5 chainHg38,67 chainHg38,307 chainNetHg38,6 chainNetHg38,70 chainNetHg38,310 chainNetHg38Viewchain,4 chainNetHg38Viewnet,4 chainNetTarSyr2,6 chainNetTarSyr2,70 chainNetTarSyr2,310 chainNetTarSyr2Viewchain,4 chainNetTarSyr2Viewnet,4 chainTarSyr2,5 chainTarSyr2,67 chainTarSyr2,307 mrna,482 netHg38,5 netHg38,67 netHg38,307 netTarSyr2,5 netTarSyr2,67 netTarSyr2,307 xenoMrna,556 2014 refSeqComposite,1782 xenoRefGene,352 2022_03 uniprot,1911 2023 HLTOGAannotvHg38v1,365 uniprot,1191 2111 chainHg38,719 chainMm10,719 chainNetHg38,722 chainNetMm10,722 chainNetTarSyr2,722 chainTarSyr2,719 netHg38,719 netMm10,719 netTarSyr2,719 217900 chainHg38,735 chainHg38,747 chainMm10,735 chainMm10,747 chainNetHg38,738 chainNetHg38,750 chainNetMm10,738 chainNetMm10,750 chainNetTarSyr2,738 chainNetTarSyr2,750 chainTarSyr2,735 chainTarSyr2,747 netHg38,735 netHg38,747 netMm10,735 netMm10,747 netTarSyr2,735 netTarSyr2,747 218300 chainHg38,759 chainMm10,759 chainNetHg38,762 chainNetMm10,762 chainNetTarSyr2,762 chainTarSyr2,759 netHg38,759 netMm10,759 netTarSyr2,759 22 windowmaskerSdust,110 22102590 uniprot,2007 225 transMapEnsemblV5,719 transMapEstV5,688 transMapRefSeqV5,688 transMapRnaV5,688 transMapV5,794 22900 chainHg38,732 chainHg38,744 chainMm10,732 chainMm10,744 chainNetHg38,735 chainNetHg38,747 chainNetMm10,735 chainNetMm10,747 chainNetTarSyr2,735 chainNetTarSyr2,747 chainTarSyr2,732 chainTarSyr2,744 netHg38,732 netHg38,744 netMm10,732 netMm10,744 netTarSyr2,732 netTarSyr2,744 23 uniprot,2047 23193287 mrna,489 xenoMrna,563 23300 chainHg38,756 chainMm10,756 chainNetHg38,759 chainNetMm10,759 chainNetTarSyr2,759 chainTarSyr2,756 netHg38,756 netMm10,756 netTarSyr2,756 24 augustusGene,311 transMapEnsemblV5,782 transMapEstV5,751 transMapRefSeqV5,751 transMapRnaV5,751 transMapV5,857 24259432 refSeqComposite,1789 xenoRefGene,359 25 genscan,225 transMapV5,113 xenoMrna,506 xenoRefGene,271 252111 chainHg38,724 chainMm10,724 chainNetHg38,727 chainNetMm10,727 chainNetTarSyr2,727 chainTarSyr2,724 netHg38,724 netMm10,724 netTarSyr2,724 261-82 cpgIslandExt,621 cpgIslandExtUnmasked,624 cpgIslandSuper,621 268 genscan,226 27 microsat,131 simpleRepeat,91 28 HLTOGAannotvHg38v1,367 2900 chainHg38,731 chainHg38,743 chainMm10,731 chainMm10,743 chainNetHg38,734 chainNetHg38,746 chainNetMm10,734 chainNetMm10,746 chainNetTarSyr2,734 chainNetTarSyr2,746 chainTarSyr2,731 chainTarSyr2,743 netHg38,731 netHg38,743 netMm10,731 netMm10,743 netTarSyr2,731 netTarSyr2,743 2n cpgIslandExt,487 cpgIslandExtUnmasked,490 cpgIslandSuper,487 3 augustusGene,140 chainHg38,437 chainHg38,716 chainMm10,437 chainMm10,716 chainNetHg38,440 chainNetHg38,719 chainNetMm10,440 chainNetMm10,719 chainNetTarSyr2,440 chainNetTarSyr2,719 chainTarSyr2,437 chainTarSyr2,716 cpgIslandExt,432 cpgIslandExt,462 cpgIslandExtUnmasked,435 cpgIslandExtUnmasked,465 cpgIslandSuper,432 cpgIslandSuper,462 microsat,68 netHg38,437 netHg38,716 netMm10,437 netMm10,716 netTarSyr2,437 netTarSyr2,716 transMapEnsemblV5,816 transMapEstV5,785 transMapRefSeqV5,785 transMapRnaV5,785 transMapV5,891 uniprot,1123 uniprot,1194 xenoMrna,90 3.1 augustusGene,24 30 chainHg38,1080 chainMm10,1080 chainNetHg38,1083 chainNetMm10,1083 chainNetTarSyr2,1083 chainTarSyr2,1080 ensGene,201 netHg38,1080 netMm10,1080 netTarSyr2,1080 300 cpgIslandExt,6 cpgIslandExtUnmasked,9 cpgIslandSuper,6 3000 chainHg38,688 chainMm10,688 chainNetHg38,691 chainNetMm10,691 chainNetTarSyr2,691 chainTarSyr2,688 netHg38,688 netMm10,688 netTarSyr2,688 31 gap,138 317900 chainHg38,736 chainHg38,748 chainMm10,736 chainMm10,748 chainNetHg38,739 chainNetHg38,751 chainNetMm10,739 chainNetMm10,751 chainNetTarSyr2,739 chainNetTarSyr2,751 chainTarSyr2,736 chainTarSyr2,748 netHg38,736 netHg38,748 netMm10,736 netMm10,748 netTarSyr2,736 netTarSyr2,748 318300 chainHg38,760 chainMm10,760 chainNetHg38,763 chainNetMm10,763 chainNetTarSyr2,763 chainTarSyr2,760 netHg38,760 netMm10,760 netTarSyr2,760 32 mrna,510 xenoMrna,584 32111 chainHg38,721 chainMm10,721 chainNetHg38,724 chainNetMm10,724 chainNetTarSyr2,724 chainTarSyr2,721 netHg38,721 netMm10,721 netTarSyr2,721 33 refSeqComposite,1818 xenoRefGene,388 3300 chainHg38,755 chainMm10,755 chainNetHg38,758 chainNetMm10,758 chainNetTarSyr2,758 chainTarSyr2,755 netHg38,755 netMm10,755 netTarSyr2,755 34990190 refSeqComposite,1560 350 chainHg38,726 chainHg38,738 chainMm10,726 chainMm10,738 chainNetHg38,729 chainNetHg38,741 chainNetMm10,729 chainNetMm10,741 chainNetTarSyr2,729 chainNetTarSyr2,741 chainTarSyr2,726 chainTarSyr2,738 netHg38,726 netHg38,738 netMm10,726 netMm10,738 netTarSyr2,726 netTarSyr2,738 3656447 cpgIslandExt,623 cpgIslandExtUnmasked,626 cpgIslandSuper,623 36727467 refSeqComposite,1562 37104600 HLTOGAannotvHg38v1,372 38-41 ensGene,203 380 HLTOGAannotvHg38v1,368 39s ensGene,163 4 mrna,530 refSeqComposite,1744 xenoMrna,604 xenoRefGene,314 40 uniprot,2002 400 transMapV5,109 41 mrna,484 xenoMrna,558 413 gold,154 418-420 nestedRepeats,359 rmsk,382 42 refSeqComposite,1784 xenoRefGene,354 425 chainHg38,727 chainHg38,739 chainMm10,727 chainMm10,739 chainNetHg38,730 chainNetHg38,742 chainNetMm10,730 chainNetMm10,742 chainNetTarSyr2,730 chainNetTarSyr2,742 chainTarSyr2,727 chainTarSyr2,739 netHg38,727 netHg38,739 netMm10,727 netMm10,739 netTarSyr2,727 netTarSyr2,739 45 refSeqComposite,945 450 chainHg38,728 chainHg38,740 chainMm10,728 chainMm10,740 chainNetHg38,731 chainNetHg38,743 chainNetMm10,731 chainNetMm10,743 chainNetTarSyr2,731 chainNetTarSyr2,743 chainTarSyr2,728 chainTarSyr2,740 netHg38,728 netHg38,740 netMm10,728 netMm10,740 netTarSyr2,728 netTarSyr2,740 464-70 uniprot,2049 5 augustusGene,312 cpgIslandExt,464 cpgIslandExtUnmasked,467 cpgIslandSuper,464 transMapEnsemblV5,9 transMapEnsemblV5,783 transMapEstV5,7 transMapEstV5,752 transMapRefSeqV5,8 transMapRefSeqV5,752 transMapRnaV5,8 transMapRnaV5,752 transMapV5,6 transMapV5,858 uniprot,2048 xenoMrna,88 5-base gc5BaseBw,6 gc5BaseBw,27 50 HLTOGAannotvHg38v1,167 HLTOGAannotvHg38v1,214 cpgIslandExt,265 cpgIslandExtUnmasked,268 cpgIslandSuper,265 nestedRepeats,229 573-80 microsat,133 simpleRepeat,93 57900 chainHg38,733 chainHg38,745 chainMm10,733 chainMm10,745 chainNetHg38,736 chainNetHg38,748 chainNetMm10,736 chainNetMm10,748 chainNetTarSyr2,736 chainNetTarSyr2,748 chainTarSyr2,733 chainTarSyr2,745 netHg38,733 netHg38,745 netMm10,733 netMm10,745 netTarSyr2,733 netTarSyr2,745 58300 chainHg38,757 chainMm10,757 chainNetHg38,760 chainNetMm10,760 chainNetTarSyr2,760 chainTarSyr2,757 netHg38,757 netMm10,757 netTarSyr2,757 6 cpgIslandExt,466 cpgIslandExt,469 cpgIslandExt,477 cpgIslandExtUnmasked,469 cpgIslandExtUnmasked,472 cpgIslandExtUnmasked,480 cpgIslandSuper,466 cpgIslandSuper,469 cpgIslandSuper,477 nestedRepeats,391 nestedRepeats,412 nestedRepeats,413 rmsk,414 rmsk,435 rmsk,436 600 chainHg38,729 chainHg38,741 chainMm10,729 chainMm10,741 chainNetHg38,732 chainNetHg38,744 chainNetMm10,732 chainNetMm10,744 chainNetTarSyr2,732 chainNetTarSyr2,744 chainTarSyr2,729 chainTarSyr2,741 netHg38,729 netHg38,741 netMm10,729 netMm10,741 netTarSyr2,729 netTarSyr2,741 637-44 augustusGene,313 transMapEnsemblV5,784 transMapEstV5,753 transMapRefSeqV5,753 transMapRnaV5,753 transMapV5,859 656-64 mrna,531 refSeqComposite,1745 xenoMrna,605 xenoRefGene,315 657-63 nestedRepeats,392 rmsk,415 6643 HLTOGAannotvHg38v1,369 7 cpgIslandExt,472 cpgIslandExt,480 cpgIslandExtUnmasked,475 cpgIslandExtUnmasked,483 cpgIslandSuper,472 cpgIslandSuper,480 72111 chainHg38,722 chainMm10,722 chainNetHg38,725 chainNetMm10,725 chainNetTarSyr2,725 chainTarSyr2,722 netHg38,722 netMm10,722 netTarSyr2,722 728 gap,134 743-8 nestedRepeats,414 rmsk,437 750 chainHg38,750 chainMm10,750 chainNetHg38,753 chainNetMm10,753 chainNetTarSyr2,753 chainTarSyr2,750 netHg38,750 netMm10,750 netTarSyr2,750 769 gap,139 78-94 genscan,228 80 HLTOGAannotvHg38v1,145 HLTOGAannotvHg38v1,179 HLTOGAannotvHg38v1,226 HLTOGAannotvHg38v1,245 825 chainHg38,751 chainMm10,751 chainNetHg38,754 chainNetMm10,754 chainNetTarSyr2,754 chainTarSyr2,751 netHg38,751 netMm10,751 netTarSyr2,751 850 chainHg38,752 chainMm10,752 chainNetHg38,755 chainNetMm10,755 chainNetTarSyr2,755 chainTarSyr2,752 netHg38,752 netMm10,752 netTarSyr2,752 8994846 nestedRepeats,416 rmsk,439 9 cpgIslandExt,482 cpgIslandExtUnmasked,485 cpgIslandSuper,482 nestedRepeats,358 nestedRepeats,390 rmsk,381 rmsk,413 900 chainHg38,730 chainHg38,742 chainMm10,730 chainMm10,742 chainNetHg38,733 chainNetHg38,745 chainNetMm10,733 chainNetMm10,745 chainNetTarSyr2,733 chainNetTarSyr2,745 chainTarSyr2,730 chainTarSyr2,742 netHg38,730 netHg38,742 netMm10,730 netMm10,742 netTarSyr2,730 netTarSyr2,742 9149143 genscan,230 93 uniprot,1483 96 mrna,432 refSeqComposite,1281 9862982 microsat,135 simpleRepeat,95 _alt uniprot,1419 _fix uniprot,1421 a HLTOGAannotvHg38v1,25 HLTOGAannotvHg38v1,46 HLTOGAannotvHg38v1,50 HLTOGAannotvHg38v1,62 HLTOGAannotvHg38v1,74 HLTOGAannotvHg38v1,116 HLTOGAannotvHg38v1,138 HLTOGAannotvHg38v1,268 HLTOGAannotvHg38v1,291 HLTOGAannotvHg38v1,296 augustusGene,116 augustusGene,128 augustusGene,152 augustusGene,215 augustusGene,218 augustusGene,233 augustusGene,323 augustusGene,328 chainHg38,76 chainHg38,146 chainHg38,199 chainHg38,457 chainHg38,467 chainHg38,471 chainHg38,538 chainHg38,555 chainHg38,558 chainHg38,625 chainHg38,630 chainHg38,636 chainHg38,640 chainHg38,651 chainHg38,683 chainHg38,802 chainHg38,816 chainHg38,822 chainHg38,828 chainHg38,832 chainHg38,835 chainHg38,863 chainHg38,1053 chainHg38,1077 chainHg38,1093 chainMm10,76 chainMm10,146 chainMm10,199 chainMm10,457 chainMm10,467 chainMm10,471 chainMm10,538 chainMm10,555 chainMm10,558 chainMm10,625 chainMm10,630 chainMm10,636 chainMm10,640 chainMm10,651 chainMm10,683 chainMm10,802 chainMm10,816 chainMm10,822 chainMm10,828 chainMm10,832 chainMm10,835 chainMm10,863 chainMm10,1053 chainMm10,1077 chainMm10,1093 chainNetHg38,79 chainNetHg38,149 chainNetHg38,202 chainNetHg38,460 chainNetHg38,470 chainNetHg38,474 chainNetHg38,541 chainNetHg38,558 chainNetHg38,561 chainNetHg38,628 chainNetHg38,633 chainNetHg38,639 chainNetHg38,643 chainNetHg38,654 chainNetHg38,686 chainNetHg38,805 chainNetHg38,819 chainNetHg38,825 chainNetHg38,831 chainNetHg38,835 chainNetHg38,838 chainNetHg38,866 chainNetHg38,1056 chainNetHg38,1080 chainNetHg38,1096 chainNetMm10,79 chainNetMm10,149 chainNetMm10,202 chainNetMm10,460 chainNetMm10,470 chainNetMm10,474 chainNetMm10,541 chainNetMm10,558 chainNetMm10,561 chainNetMm10,628 chainNetMm10,633 chainNetMm10,639 chainNetMm10,643 chainNetMm10,654 chainNetMm10,686 chainNetMm10,805 chainNetMm10,819 chainNetMm10,825 chainNetMm10,831 chainNetMm10,835 chainNetMm10,838 chainNetMm10,866 chainNetMm10,1056 chainNetMm10,1080 chainNetMm10,1096 chainNetTarSyr2,79 chainNetTarSyr2,149 chainNetTarSyr2,202 chainNetTarSyr2,460 chainNetTarSyr2,470 chainNetTarSyr2,474 chainNetTarSyr2,541 chainNetTarSyr2,558 chainNetTarSyr2,561 chainNetTarSyr2,628 chainNetTarSyr2,633 chainNetTarSyr2,639 chainNetTarSyr2,643 chainNetTarSyr2,654 chainNetTarSyr2,686 chainNetTarSyr2,805 chainNetTarSyr2,819 chainNetTarSyr2,825 chainNetTarSyr2,831 chainNetTarSyr2,835 chainNetTarSyr2,838 chainNetTarSyr2,866 chainNetTarSyr2,1056 chainNetTarSyr2,1080 chainNetTarSyr2,1096 chainTarSyr2,76 chainTarSyr2,146 chainTarSyr2,199 chainTarSyr2,457 chainTarSyr2,467 chainTarSyr2,471 chainTarSyr2,538 chainTarSyr2,555 chainTarSyr2,558 chainTarSyr2,625 chainTarSyr2,630 chainTarSyr2,636 chainTarSyr2,640 chainTarSyr2,651 chainTarSyr2,683 chainTarSyr2,802 chainTarSyr2,816 chainTarSyr2,822 chainTarSyr2,828 chainTarSyr2,832 chainTarSyr2,835 chainTarSyr2,863 chainTarSyr2,1053 chainTarSyr2,1077 chainTarSyr2,1093 cpgIslandExt,43 cpgIslandExt,50 cpgIslandExt,54 cpgIslandExt,128 cpgIslandExt,166 cpgIslandExt,236 cpgIslandExt,590 cpgIslandExt,593 cpgIslandExtUnmasked,46 cpgIslandExtUnmasked,53 cpgIslandExtUnmasked,57 cpgIslandExtUnmasked,131 cpgIslandExtUnmasked,169 cpgIslandExtUnmasked,239 cpgIslandExtUnmasked,593 cpgIslandExtUnmasked,596 cpgIslandSuper,43 cpgIslandSuper,50 cpgIslandSuper,54 cpgIslandSuper,128 cpgIslandSuper,166 cpgIslandSuper,236 cpgIslandSuper,590 cpgIslandSuper,593 ensGene,31 gap,100 gap,104 gc5BaseBw,44 genscan,102 genscan,132 gold,118 gold,124 microsat,53 microsat,119 mrna,64 mrna,81 mrna,116 mrna,142 mrna,215 mrna,334 mrna,401 mrna,420 nestedRepeats,177 nestedRepeats,226 nestedRepeats,344 nestedRepeats,363 netHg38,76 netHg38,146 netHg38,199 netHg38,457 netHg38,467 netHg38,471 netHg38,538 netHg38,555 netHg38,558 netHg38,625 netHg38,630 netHg38,636 netHg38,640 netHg38,651 netHg38,683 netHg38,802 netHg38,816 netHg38,822 netHg38,828 netHg38,832 netHg38,835 netHg38,863 netHg38,1053 netHg38,1077 netHg38,1093 netMm10,76 netMm10,146 netMm10,199 netMm10,457 netMm10,467 netMm10,471 netMm10,538 netMm10,555 netMm10,558 netMm10,625 netMm10,630 netMm10,636 netMm10,640 netMm10,651 netMm10,683 netMm10,802 netMm10,816 netMm10,822 netMm10,828 netMm10,832 netMm10,835 netMm10,863 netMm10,1053 netMm10,1077 netMm10,1093 netTarSyr2,76 netTarSyr2,146 netTarSyr2,199 netTarSyr2,457 netTarSyr2,467 netTarSyr2,471 netTarSyr2,538 netTarSyr2,555 netTarSyr2,558 netTarSyr2,625 netTarSyr2,630 netTarSyr2,636 netTarSyr2,640 netTarSyr2,651 netTarSyr2,683 netTarSyr2,802 netTarSyr2,816 netTarSyr2,822 netTarSyr2,828 netTarSyr2,832 netTarSyr2,835 netTarSyr2,863 netTarSyr2,1053 netTarSyr2,1077 netTarSyr2,1093 refSeqComposite,148 refSeqComposite,159 refSeqComposite,296 refSeqComposite,311 refSeqComposite,533 refSeqComposite,646 refSeqComposite,794 refSeqComposite,1056 refSeqComposite,1250 refSeqComposite,1269 refSeqComposite,1522 refSeqComposite,1541 refSeqComposite,1567 refSeqComposite,1656 refSeqComposite,1759 refSeqComposite,1802 rmsk,36 rmsk,56 rmsk,226 rmsk,240 rmsk,367 rmsk,386 simpleRepeat,79 transMapEnsemblV5,83 transMapEnsemblV5,116 transMapEnsemblV5,207 transMapEnsemblV5,320 transMapEnsemblV5,356 transMapEnsemblV5,400 transMapEnsemblV5,426 transMapEnsemblV5,479 transMapEnsemblV5,549 transMapEnsemblV5,628 transMapEnsemblV5,656 transMapEnsemblV5,715 transMapEstV5,52 transMapEstV5,85 transMapEstV5,176 transMapEstV5,289 transMapEstV5,325 transMapEstV5,369 transMapEstV5,395 transMapEstV5,448 transMapEstV5,518 transMapEstV5,597 transMapEstV5,625 transMapEstV5,684 transMapRefSeqV5,52 transMapRefSeqV5,85 transMapRefSeqV5,176 transMapRefSeqV5,289 transMapRefSeqV5,325 transMapRefSeqV5,369 transMapRefSeqV5,395 transMapRefSeqV5,448 transMapRefSeqV5,518 transMapRefSeqV5,597 transMapRefSeqV5,625 transMapRefSeqV5,684 transMapRnaV5,52 transMapRnaV5,85 transMapRnaV5,176 transMapRnaV5,289 transMapRnaV5,325 transMapRnaV5,369 transMapRnaV5,395 transMapRnaV5,448 transMapRnaV5,518 transMapRnaV5,597 transMapRnaV5,625 transMapRnaV5,684 transMapV5,53 transMapV5,191 transMapV5,282 transMapV5,395 transMapV5,431 transMapV5,475 transMapV5,501 transMapV5,554 transMapV5,624 transMapV5,703 transMapV5,731 transMapV5,790 uniprot,140 uniprot,311 uniprot,418 uniprot,459 uniprot,480 uniprot,490 uniprot,523 uniprot,603 uniprot,622 uniprot,708 uniprot,740 uniprot,759 uniprot,805 uniprot,965 uniprot,976 uniprot,988 uniprot,1001 uniprot,1048 uniprot,1071 uniprot,1152 uniprot,1164 uniprot,1179 uniprot,1217 uniprot,1226 uniprot,1234 uniprot,1239 uniprot,1286 uniprot,1458 uniprot,1599 uniprot,1634 uniprot,1735 uniprot,1779 uniprot,1807 uniprot,1922 uniprot,1949 uniprot,2017 uniprot,2023 uniprot,2032 windowmaskerSdust,91 xenoMrna,109 xenoMrna,138 xenoMrna,155 xenoMrna,190 xenoMrna,216 xenoMrna,289 xenoMrna,408 xenoMrna,474 xenoMrna,494 xenoRefGene,240 xenoRefGene,259 xenoRefGene,329 xenoRefGene,372 a100-175-24-120 chainNetTarSyr2,679 chainTarSyr2,676 netTarSyr2,676 a100-178-40-145 chainHg38,676 chainNetHg38,679 netHg38,676 a91-114-31-123 chainMm10,676 chainNetMm10,679 netMm10,676 aa unipModif,1 windowmaskerSdust,97 ab augustusGene,3 augustusGene,16 abbreviated chainHg38,588 chainMm10,588 chainNetHg38,591 chainNetMm10,591 chainNetTarSyr2,591 chainTarSyr2,588 netHg38,588 netMm10,588 netTarSyr2,588 about HLTOGAannotvHg38v1,301 chainHg38,463 chainHg38,476 chainHg38,852 chainMm10,463 chainMm10,476 chainMm10,852 chainNetHg38,466 chainNetHg38,479 chainNetHg38,855 chainNetMm10,466 chainNetMm10,479 chainNetMm10,855 chainNetTarSyr2,466 chainNetTarSyr2,479 chainNetTarSyr2,855 chainTarSyr2,463 chainTarSyr2,476 chainTarSyr2,852 gap,36 genscan,127 gold,38 microsat,98 mrna,351 netHg38,463 netHg38,476 netHg38,852 netMm10,463 netMm10,476 netMm10,852 netTarSyr2,463 netTarSyr2,476 netTarSyr2,852 refSeqComposite,96 refSeqComposite,854 refSeqComposite,1189 refSeqComposite,1385 refSeqComposite,1464 simpleRepeat,59 transMapEnsemblV5,133 transMapEstV5,102 transMapRefSeqV5,102 transMapRnaV5,102 transMapV5,208 xenoMrna,425 xenoRefGene,178 above chainHg38,535 chainHg38,547 chainHg38,567 chainMm10,535 chainMm10,547 chainMm10,567 chainNetHg38,538 chainNetHg38,550 chainNetHg38,570 chainNetMm10,538 chainNetMm10,550 chainNetMm10,570 chainNetTarSyr2,538 chainNetTarSyr2,550 chainNetTarSyr2,570 chainTarSyr2,535 chainTarSyr2,547 chainTarSyr2,567 nestedRepeats,218 netHg38,535 netHg38,547 netHg38,567 netMm10,535 netMm10,547 netMm10,567 netTarSyr2,535 netTarSyr2,547 netTarSyr2,567 uniprot,1525 abundance chainHg38,181 chainMm10,181 chainNetHg38,184 chainNetMm10,184 chainNetTarSyr2,184 chainTarSyr2,181 netHg38,181 netMm10,181 netTarSyr2,181 acad chainHg38,1073 chainMm10,1073 chainNetHg38,1076 chainNetMm10,1076 chainNetTarSyr2,1076 chainTarSyr2,1073 netHg38,1073 netMm10,1073 netTarSyr2,1073 acc ucscToRefSeq,2 acceptor genscan,32 access cpgIslandExt,505 cpgIslandExtUnmasked,508 cpgIslandSuper,505 ensGene,56 ensGene,100 refSeqComposite,1291 refSeqComposite,1355 refSeqComposite,1445 refSeqComposite,1654 transMapEnsemblV5,519 transMapEnsemblV5,578 transMapEstV5,488 transMapEstV5,547 transMapRefSeqV5,488 transMapRefSeqV5,547 transMapRnaV5,488 transMapRnaV5,547 transMapV5,594 transMapV5,653 uniprot,896 uniprot,1706 uniprot,1838 accessed refSeqComposite,1300 refSeqComposite,1323 transMapEnsemblV5,528 transMapEstV5,497 transMapRefSeqV5,497 transMapRnaV5,497 transMapV5,603 accesses refSeqComposite,1628 accessing refSeqComposite,1386 transMapEnsemblV5,571 transMapEstV5,540 transMapRefSeqV5,540 transMapRnaV5,540 transMapV5,646 accession refSeqComposite,781 refSeqComposite,806 ucscToINSDC,2 ucscToINSDC,23 ucscToRefSeq,4 ucscToRefSeq,18 xenoRefGene,118 xenoRefGene,130 accession.version-srcuniq.destuniq transMapEnsemblV5,422 transMapEstV5,391 transMapRefSeqV5,391 transMapRnaV5,391 transMapV5,497 accessions refSeqComposite,222 refSeqComposite,351 refSeqComposite,495 transMapEnsemblV5,394 transMapEstV5,363 transMapRefSeqV5,363 transMapRnaV5,363 transMapV5,469 according augustusGene,114 cpgIslandExt,370 cpgIslandExtUnmasked,373 cpgIslandSuper,370 nestedRepeats,183 accurately HLTOGAannotvHg38v1,91 acgt chainHg38,675 chainMm10,675 chainNetHg38,678 chainNetMm10,678 chainNetTarSyr2,678 chainTarSyr2,675 netHg38,675 netMm10,675 netTarSyr2,675 acid unipModif,5 unipMut,4 uniprot,339 uniprot,351 acids ensGene,196 microsat,126 mrna,480 mrna,505 refSeqComposite,1780 refSeqComposite,1813 simpleRepeat,86 uniprot,620 uniprot,1998 xenoMrna,554 xenoMrna,579 xenoRefGene,350 xenoRefGene,383 acronym uniprot,546 added chainHg38,598 chainMm10,598 chainNetHg38,601 chainNetMm10,601 chainNetTarSyr2,601 chainTarSyr2,598 nestedRepeats,147 netHg38,598 netMm10,598 netTarSyr2,598 transMapEnsemblV5,428 transMapEnsemblV5,438 transMapEstV5,397 transMapEstV5,407 transMapRefSeqV5,397 transMapRefSeqV5,407 transMapRnaV5,397 transMapRnaV5,407 transMapV5,503 transMapV5,513 uniprot,1187 additional HLTOGAannotvHg38v1,299 nestedRepeats,288 rmsk,295 additions refSeqComposite,119 adjust refSeqComposite,744 admin cpgIslandExt,577 cpgIslandExtUnmasked,580 cpgIslandSuper,577 uniprot,1917 advice chainHg38,938 chainHg38,970 chainMm10,938 chainMm10,970 chainNetHg38,941 chainNetHg38,973 chainNetMm10,941 chainNetMm10,973 chainNetTarSyr2,941 chainNetTarSyr2,973 chainTarSyr2,938 chainTarSyr2,970 netHg38,938 netHg38,970 netMm10,938 netMm10,970 netTarSyr2,938 netTarSyr2,970 advise refSeqComposite,78 ae HLTOGAannotvHg38v1,347 af nestedRepeats,372 nestedRepeats,396 rmsk,395 rmsk,419 afa nestedRepeats,325 rmsk,348 affine chainHg38,86 chainMm10,86 chainNetHg38,89 chainNetMm10,89 chainNetTarSyr2,89 chainTarSyr2,86 netHg38,86 netMm10,86 netTarSyr2,86 after chainHg38,910 chainMm10,910 chainNetHg38,913 chainNetMm10,913 chainNetTarSyr2,913 chainTarSyr2,910 cpgIslandExt,94 cpgIslandExt,326 cpgIslandExtUnmasked,97 cpgIslandExtUnmasked,329 cpgIslandSuper,94 cpgIslandSuper,326 netHg38,910 netMm10,910 netTarSyr2,910 uniprot,294 uniprot,1329 again transMapEnsemblV5,410 transMapEstV5,379 transMapRefSeqV5,379 transMapRnaV5,379 transMapV5,485 uniprot,629 uniprot,1500 against mrna,344 mrna,393 refSeqComposite,1232 transMapEnsemblV5,126 transMapEstV5,95 transMapRefSeqV5,95 transMapRnaV5,95 transMapV5,201 xenoMrna,418 xenoMrna,465 xenoRefGene,222 agarwala windowmaskerSdust,98 agp gap,50 gap,59 gap,66 gold,49 gold,58 gold,65 ahmed HLTOGAannotvHg38v1,348 aids cpgIslandExt,86 cpgIslandExtUnmasked,89 cpgIslandSuper,86 al HLTOGAannotvHg38v1,355 cpgIslandExt,378 cpgIslandExtUnmasked,381 cpgIslandSuper,378 ensGene,46 ensGene,189 refSeqComposite,1771 transMapEnsemblV5,736 transMapEstV5,705 transMapRefSeqV5,705 transMapRnaV5,705 transMapV5,811 xenoRefGene,341 alejo uniprot,1966 algorithm augustusGene,130 transMapEnsemblV5,28 transMapEstV5,26 transMapRefSeqV5,26 transMapRnaV5,26 transMapV5,25 algorithms uniprot,52 align chainHg38,197 chainMm10,197 chainNetHg38,200 chainNetMm10,200 chainNetTarSyr2,200 chainTarSyr2,197 netHg38,197 netMm10,197 netTarSyr2,197 uniprot,1216 alignable chainHg38,22 chainHg38,38 chainMm10,22 chainMm10,38 chainNetHg38,25 chainNetHg38,41 chainNetMm10,25 chainNetMm10,41 chainNetTarSyr2,25 chainNetTarSyr2,41 chainTarSyr2,22 chainTarSyr2,38 netHg38,22 netHg38,38 netMm10,22 netMm10,38 netTarSyr2,22 netTarSyr2,38 aligned chainHg38,591 chainMm10,591 chainNetHg38,594 chainNetMm10,594 chainNetTarSyr2,594 chainTarSyr2,591 mrna,392 mrna,404 netHg38,591 netMm10,591 netTarSyr2,591 refSeqComposite,81 refSeqComposite,190 refSeqComposite,305 refSeqComposite,898 refSeqComposite,1061 refSeqComposite,1231 refSeqComposite,1253 transMapV5,117 uniprot,783 uniprot,973 uniprot,1007 uniprot,1246 uniprot,1335 uniprot,1472 xenoMrna,464 xenoMrna,477 xenoRefGene,221 xenoRefGene,243 aligning chainHg38,135 chainHg38,335 chainHg38,365 chainMm10,135 chainMm10,335 chainMm10,365 chainNetHg38,138 chainNetHg38,338 chainNetHg38,368 chainNetMm10,138 chainNetMm10,338 chainNetMm10,368 chainNetTarSyr2,138 chainNetTarSyr2,338 chainNetTarSyr2,368 chainTarSyr2,135 chainTarSyr2,335 chainTarSyr2,365 netHg38,135 netHg38,335 netHg38,365 netMm10,135 netMm10,335 netMm10,365 netTarSyr2,135 netTarSyr2,335 netTarSyr2,365 uniprot,952 alignment HLTOGAannotvHg38v1,65 chainHg38,261 chainHg38,1020 chainMm10,261 chainMm10,1020 chainNetHg38,264 chainNetHg38,1023 chainNetMm10,264 chainNetMm10,1023 chainNetTarSyr2,264 chainNetTarSyr2,1023 chainTarSyr2,261 chainTarSyr2,1020 mrna,39 mrna,362 mrna,368 mrna,380 mrna,409 mrna,523 netHg38,8 netHg38,261 netHg38,1020 netMm10,8 netMm10,261 netMm10,1020 netTarSyr2,8 netTarSyr2,261 netTarSyr2,1020 refSeqComposite,194 refSeqComposite,328 refSeqComposite,460 refSeqComposite,1150 refSeqComposite,1242 refSeqComposite,1258 refSeqComposite,1737 transMapEnsemblV5,27 transMapEnsemblV5,79 transMapEnsemblV5,104 transMapEnsemblV5,141 transMapEnsemblV5,197 transMapEnsemblV5,211 transMapEnsemblV5,390 transMapEnsemblV5,433 transMapEstV5,25 transMapEstV5,48 transMapEstV5,73 transMapEstV5,110 transMapEstV5,166 transMapEstV5,180 transMapEstV5,359 transMapEstV5,402 transMapRefSeqV5,25 transMapRefSeqV5,48 transMapRefSeqV5,73 transMapRefSeqV5,110 transMapRefSeqV5,166 transMapRefSeqV5,180 transMapRefSeqV5,359 transMapRefSeqV5,402 transMapRnaV5,25 transMapRnaV5,48 transMapRnaV5,73 transMapRnaV5,110 transMapRnaV5,166 transMapRnaV5,180 transMapRnaV5,359 transMapRnaV5,402 transMapV5,24 transMapV5,49 transMapV5,179 transMapV5,216 transMapV5,272 transMapV5,286 transMapV5,465 transMapV5,508 unipAliSwissprot,4 unipAliTrembl,4 uniprot,108 uniprot,135 uniprot,191 uniprot,807 uniprot,914 uniprot,1175 uniprot,1429 uniprot,1523 uniprot,1620 uniprot,1629 uniprot,1636 uniprot,1642 uniprot,1704 uniprot,1862 xenoMrna,43 xenoMrna,436 xenoMrna,442 xenoMrna,454 xenoMrna,482 xenoMrna,597 xenoRefGene,232 xenoRefGene,248 xenoRefGene,307 alignments HLTOGAannotvHg38v1,23 HLTOGAannotvHg38v1,80 HLTOGAannotvHg38v1,313 augustusGene,300 chainHg38,9 chainHg38,63 chainHg38,450 chainHg38,603 chainHg38,615 chainHg38,623 chainHg38,650 chainHg38,768 chainHg38,1040 chainHg38,1105 chainMm10,9 chainMm10,63 chainMm10,450 chainMm10,603 chainMm10,615 chainMm10,623 chainMm10,650 chainMm10,768 chainMm10,1040 chainMm10,1105 chainNetHg38,12 chainNetHg38,66 chainNetHg38,453 chainNetHg38,606 chainNetHg38,618 chainNetHg38,626 chainNetHg38,653 chainNetHg38,771 chainNetHg38,1043 chainNetHg38,1108 chainNetHg38Viewchain,10 chainNetHg38Viewnet,10 chainNetMm10,12 chainNetMm10,66 chainNetMm10,453 chainNetMm10,606 chainNetMm10,618 chainNetMm10,626 chainNetMm10,653 chainNetMm10,771 chainNetMm10,1043 chainNetMm10,1108 chainNetMm10Viewchain,10 chainNetMm10Viewnet,10 chainNetTarSyr2,12 chainNetTarSyr2,66 chainNetTarSyr2,453 chainNetTarSyr2,606 chainNetTarSyr2,618 chainNetTarSyr2,626 chainNetTarSyr2,653 chainNetTarSyr2,771 chainNetTarSyr2,1043 chainNetTarSyr2,1108 chainNetTarSyr2Viewchain,10 chainNetTarSyr2Viewnet,10 chainTarSyr2,9 chainTarSyr2,63 chainTarSyr2,450 chainTarSyr2,603 chainTarSyr2,615 chainTarSyr2,623 chainTarSyr2,650 chainTarSyr2,768 chainTarSyr2,1040 chainTarSyr2,1105 mrna,17 mrna,418 ncbiRefSeqPsl,2 ncbiRefSeqPsl,4 netHg38,63 netHg38,450 netHg38,603 netHg38,615 netHg38,623 netHg38,650 netHg38,768 netHg38,1040 netHg38,1105 netMm10,63 netMm10,450 netMm10,603 netMm10,615 netMm10,623 netMm10,650 netMm10,768 netMm10,1040 netMm10,1105 netTarSyr2,63 netTarSyr2,450 netTarSyr2,603 netTarSyr2,615 netTarSyr2,623 netTarSyr2,650 netTarSyr2,768 netTarSyr2,1040 netTarSyr2,1105 refSeqComposite,268 refSeqComposite,367 refSeqComposite,434 refSeqComposite,436 refSeqComposite,1211 refSeqComposite,1267 refSeqComposite,1424 rmsk,306 transMapEnsemblV5,21 transMapEnsemblV5,72 transMapEnsemblV5,155 transMapEnsemblV5,168 transMapEnsemblV5,327 transMapEnsemblV5,340 transMapEnsemblV5,350 transMapEnsemblV5,373 transMapEnsemblV5,444 transMapEnsemblV5,456 transMapEnsemblV5,771 transMapEstV5,19 transMapEstV5,41 transMapEstV5,124 transMapEstV5,137 transMapEstV5,296 transMapEstV5,309 transMapEstV5,319 transMapEstV5,342 transMapEstV5,413 transMapEstV5,425 transMapEstV5,740 transMapRefSeqV5,19 transMapRefSeqV5,41 transMapRefSeqV5,124 transMapRefSeqV5,137 transMapRefSeqV5,296 transMapRefSeqV5,309 transMapRefSeqV5,319 transMapRefSeqV5,342 transMapRefSeqV5,413 transMapRefSeqV5,425 transMapRefSeqV5,740 transMapRnaV5,19 transMapRnaV5,41 transMapRnaV5,124 transMapRnaV5,137 transMapRnaV5,296 transMapRnaV5,309 transMapRnaV5,319 transMapRnaV5,342 transMapRnaV5,413 transMapRnaV5,425 transMapRnaV5,740 transMapV5,4 transMapV5,18 transMapV5,40 transMapV5,68 transMapV5,86 transMapV5,128 transMapV5,141 transMapV5,230 transMapV5,243 transMapV5,402 transMapV5,415 transMapV5,425 transMapV5,448 transMapV5,519 transMapV5,531 transMapV5,846 uniprot,82 uniprot,100 uniprot,637 uniprot,793 uniprot,814 uniprot,876 uniprot,1138 uniprot,1148 uniprot,1161 uniprot,1309 uniprot,1410 uniprot,1487 xenoMrna,17 xenoMrna,492 xenoRefGene,257 aligns transMapV5,163 all augustusGene,207 chainHg38,622 chainMm10,622 chainNetHg38,625 chainNetMm10,625 chainNetTarSyr2,625 chainTarSyr2,622 cpgIslandExt,327 cpgIslandExt,527 cpgIslandExtUnmasked,6 cpgIslandExtUnmasked,330 cpgIslandExtUnmasked,530 cpgIslandSuper,327 cpgIslandSuper,527 mrna,138 mrna,192 mrna,247 ncbiRefSeq,2 nestedRepeats,138 nestedRepeats,170 netHg38,622 netMm10,622 netTarSyr2,622 refSeqComposite,34 refSeqComposite,85 refSeqComposite,178 refSeqComposite,183 refSeqComposite,199 refSeqComposite,201 refSeqComposite,215 refSeqComposite,345 refSeqComposite,381 refSeqComposite,589 refSeqComposite,792 refSeqComposite,1410 refSeqComposite,1574 refSeqComposite,1666 refSeqComposite,1671 rmsk,65 transMapEnsemblV5,191 transMapEstV5,160 transMapRefSeqV5,160 transMapRnaV5,160 transMapV5,266 uniprot,89 uniprot,121 uniprot,204 uniprot,395 uniprot,956 uniprot,1107 uniprot,1167 uniprot,1311 uniprot,1337 uniprot,1343 uniprot,1418 uniprot,1542 uniprot,1685 uniprot,1979 xenoMrna,212 xenoMrna,266 xenoMrna,321 allows augustusGene,168 chainHg38,81 chainMm10,81 chainNetHg38,84 chainNetMm10,84 chainNetTarSyr2,84 chainTarSyr2,81 mrna,337 netHg38,81 netMm10,81 netTarSyr2,81 refSeqComposite,825 transMapEnsemblV5,119 transMapEnsemblV5,289 transMapEstV5,88 transMapEstV5,258 transMapRefSeqV5,88 transMapRefSeqV5,258 transMapRnaV5,88 transMapRnaV5,258 transMapV5,194 transMapV5,364 xenoMrna,411 xenoRefGene,149 aln unipAliSwissprot,2 unipAliTrembl,2 alone augustusGene,33 along transMapEnsemblV5,182 transMapEstV5,151 transMapRefSeqV5,151 transMapRnaV5,151 transMapV5,257 alpha refSeqComposite,418 already chainHg38,813 chainMm10,813 chainNetHg38,816 chainNetMm10,816 chainNetTarSyr2,816 chainTarSyr2,813 netHg38,813 netMm10,813 netTarSyr2,813 also HLTOGAannotvHg38v1,190 chainHg38,92 chainMm10,92 chainNetHg38,95 chainNetMm10,95 chainNetTarSyr2,95 chainTarSyr2,92 cpgIslandExt,531 cpgIslandExtUnmasked,534 cpgIslandSuper,531 ensGene,48 gap,32 gold,34 mrna,219 mrna,327 mrna,371 netHg38,92 netMm10,92 netTarSyr2,92 refSeqComposite,1129 refSeqComposite,1321 refSeqComposite,1354 refSeqComposite,1586 transMapEnsemblV5,109 transMapEnsemblV5,144 transMapEnsemblV5,648 transMapEstV5,78 transMapEstV5,113 transMapEstV5,617 transMapRefSeqV5,78 transMapRefSeqV5,113 transMapRefSeqV5,617 transMapRnaV5,78 transMapRnaV5,113 transMapRnaV5,617 transMapV5,184 transMapV5,219 transMapV5,723 uniprot,666 uniprot,706 uniprot,1799 xenoMrna,293 xenoMrna,401 xenoMrna,445 alt uniprot,850 alter mrna,75 xenoMrna,149 alternating gold,90 alternative augustusGene,122 unipAliSwissprot,16 uniprot,163 uniprot,670 alternatives-from-sampling augustusGene,131 alus rmsk,160 always gold,121 uniprot,503 uniprot,960 uniprot,1411 uniprot,1579 xenoMrna,87 ambiguous refSeqComposite,990 amino unipModif,4 unipMut,3 uniprot,338 uniprot,350 uniprot,619 amount rmsk,215 amsterdam genscan,201 an chainHg38,153 chainHg38,180 chainHg38,186 chainMm10,153 chainMm10,180 chainMm10,186 chainNetHg38,156 chainNetHg38,183 chainNetHg38,189 chainNetMm10,156 chainNetMm10,183 chainNetMm10,189 chainNetTarSyr2,156 chainNetTarSyr2,183 chainNetTarSyr2,189 chainTarSyr2,153 chainTarSyr2,180 chainTarSyr2,186 cpgIslandExt,66 cpgIslandExtUnmasked,69 cpgIslandSuper,66 gc5BaseBw,65 nestedRepeats,196 nestedRepeats,347 netHg38,153 netHg38,180 netHg38,186 netMm10,153 netMm10,180 netMm10,186 netTarSyr2,153 netTarSyr2,180 netTarSyr2,186 refSeqComposite,748 refSeqComposite,819 refSeqComposite,1241 refSeqComposite,1773 rmsk,370 uniprot,765 uniprot,899 uniprot,1203 uniprot,1467 uniprot,1568 xenoRefGene,143 xenoRefGene,231 xenoRefGene,343 analysis refSeqComposite,76 refSeqComposite,1459 transMapEnsemblV5,540 transMapEstV5,509 transMapRefSeqV5,509 transMapRnaV5,509 transMapV5,615 uniprot,1648 uniprot,1728 analyze microsat,122 simpleRepeat,82 and HLTOGAannotvHg38v1,12 HLTOGAannotvHg38v1,34 HLTOGAannotvHg38v1,61 HLTOGAannotvHg38v1,69 HLTOGAannotvHg38v1,83 HLTOGAannotvHg38v1,86 HLTOGAannotvHg38v1,110 HLTOGAannotvHg38v1,130 HLTOGAannotvHg38v1,153 HLTOGAannotvHg38v1,176 HLTOGAannotvHg38v1,223 HLTOGAannotvHg38v1,310 augustusGene,9 augustusGene,60 augustusGene,74 augustusGene,87 augustusGene,206 augustusGene,271 augustusGene,277 augustusGene,296 augustusGene,327 chainHg38,98 chainHg38,113 chainHg38,229 chainHg38,237 chainHg38,251 chainHg38,291 chainHg38,313 chainHg38,439 chainHg38,594 chainHg38,629 chainHg38,638 chainHg38,779 chainHg38,857 chainHg38,889 chainHg38,900 chainHg38,909 chainHg38,934 chainHg38,949 chainHg38,974 chainHg38,980 chainHg38,986 chainHg38,993 chainHg38,999 chainHg38,1063 chainHg38,1068 chainMm10,98 chainMm10,113 chainMm10,229 chainMm10,237 chainMm10,251 chainMm10,291 chainMm10,313 chainMm10,439 chainMm10,594 chainMm10,629 chainMm10,638 chainMm10,779 chainMm10,857 chainMm10,889 chainMm10,900 chainMm10,909 chainMm10,934 chainMm10,949 chainMm10,974 chainMm10,980 chainMm10,986 chainMm10,993 chainMm10,999 chainMm10,1063 chainMm10,1068 chainNetHg38,10 chainNetHg38,101 chainNetHg38,116 chainNetHg38,232 chainNetHg38,240 chainNetHg38,254 chainNetHg38,294 chainNetHg38,316 chainNetHg38,442 chainNetHg38,597 chainNetHg38,632 chainNetHg38,641 chainNetHg38,782 chainNetHg38,860 chainNetHg38,892 chainNetHg38,903 chainNetHg38,912 chainNetHg38,937 chainNetHg38,952 chainNetHg38,977 chainNetHg38,983 chainNetHg38,989 chainNetHg38,996 chainNetHg38,1002 chainNetHg38,1066 chainNetHg38,1071 chainNetHg38Viewchain,8 chainNetHg38Viewnet,8 chainNetMm10,10 chainNetMm10,101 chainNetMm10,116 chainNetMm10,232 chainNetMm10,240 chainNetMm10,254 chainNetMm10,294 chainNetMm10,316 chainNetMm10,442 chainNetMm10,597 chainNetMm10,632 chainNetMm10,641 chainNetMm10,782 chainNetMm10,860 chainNetMm10,892 chainNetMm10,903 chainNetMm10,912 chainNetMm10,937 chainNetMm10,952 chainNetMm10,977 chainNetMm10,983 chainNetMm10,989 chainNetMm10,996 chainNetMm10,1002 chainNetMm10,1066 chainNetMm10,1071 chainNetMm10Viewchain,8 chainNetMm10Viewnet,8 chainNetTarSyr2,10 chainNetTarSyr2,101 chainNetTarSyr2,116 chainNetTarSyr2,232 chainNetTarSyr2,240 chainNetTarSyr2,254 chainNetTarSyr2,294 chainNetTarSyr2,316 chainNetTarSyr2,442 chainNetTarSyr2,597 chainNetTarSyr2,632 chainNetTarSyr2,641 chainNetTarSyr2,782 chainNetTarSyr2,860 chainNetTarSyr2,892 chainNetTarSyr2,903 chainNetTarSyr2,912 chainNetTarSyr2,937 chainNetTarSyr2,952 chainNetTarSyr2,977 chainNetTarSyr2,983 chainNetTarSyr2,989 chainNetTarSyr2,996 chainNetTarSyr2,1002 chainNetTarSyr2,1066 chainNetTarSyr2,1071 chainNetTarSyr2Viewchain,8 chainNetTarSyr2Viewnet,8 chainTarSyr2,98 chainTarSyr2,113 chainTarSyr2,229 chainTarSyr2,237 chainTarSyr2,251 chainTarSyr2,291 chainTarSyr2,313 chainTarSyr2,439 chainTarSyr2,594 chainTarSyr2,629 chainTarSyr2,638 chainTarSyr2,779 chainTarSyr2,857 chainTarSyr2,889 chainTarSyr2,900 chainTarSyr2,909 chainTarSyr2,934 chainTarSyr2,949 chainTarSyr2,974 chainTarSyr2,980 chainTarSyr2,986 chainTarSyr2,993 chainTarSyr2,999 chainTarSyr2,1063 chainTarSyr2,1068 cpgIslandExt,12 cpgIslandExt,35 cpgIslandExt,183 cpgIslandExt,244 cpgIslandExt,248 cpgIslandExt,295 cpgIslandExt,508 cpgIslandExt,599 cpgIslandExtUnmasked,15 cpgIslandExtUnmasked,38 cpgIslandExtUnmasked,186 cpgIslandExtUnmasked,247 cpgIslandExtUnmasked,251 cpgIslandExtUnmasked,298 cpgIslandExtUnmasked,511 cpgIslandExtUnmasked,602 cpgIslandSuper,12 cpgIslandSuper,35 cpgIslandSuper,183 cpgIslandSuper,244 cpgIslandSuper,248 cpgIslandSuper,295 cpgIslandSuper,508 cpgIslandSuper,599 cytoBandIdeo,8 ensGene,6 ensGene,128 gap,5 gap,81 gap,103 gc5BaseBw,9 gc5BaseBw,22 gc5BaseBw,74 genscan,7 genscan,30 genscan,40 genscan,46 genscan,63 genscan,83 genscan,97 genscan,108 genscan,119 genscan,138 genscan,147 gold,6 gold,92 gold,106 gold,112 microsat,4 microsat,8 microsat,33 microsat,36 microsat,67 microsat,72 microsat,75 mrna,10 mrna,24 mrna,29 mrna,78 mrna,239 mrna,358 mrna,429 ncbiRefSeq,7 ncbiRefSeq,16 ncbiRefSeqCurated,14 ncbiRefSeqGenomicDiff,8 ncbiRefSeqGenomicDiff,13 ncbiRefSeqOther,16 ncbiRefSeqPredicted,12 ncbiRefSeqPsl,8 nestedRepeats,12 nestedRepeats,38 nestedRepeats,113 nestedRepeats,162 nestedRepeats,166 nestedRepeats,231 nestedRepeats,256 nestedRepeats,309 nestedRepeats,315 nestedRepeats,346 nestedRepeats,375 netHg38,98 netHg38,113 netHg38,229 netHg38,237 netHg38,251 netHg38,291 netHg38,313 netHg38,439 netHg38,594 netHg38,629 netHg38,638 netHg38,779 netHg38,857 netHg38,889 netHg38,900 netHg38,909 netHg38,934 netHg38,949 netHg38,974 netHg38,980 netHg38,986 netHg38,993 netHg38,999 netHg38,1063 netHg38,1068 netMm10,98 netMm10,113 netMm10,229 netMm10,237 netMm10,251 netMm10,291 netMm10,313 netMm10,439 netMm10,594 netMm10,629 netMm10,638 netMm10,779 netMm10,857 netMm10,889 netMm10,900 netMm10,909 netMm10,934 netMm10,949 netMm10,974 netMm10,980 netMm10,986 netMm10,993 netMm10,999 netMm10,1063 netMm10,1068 netTarSyr2,98 netTarSyr2,113 netTarSyr2,229 netTarSyr2,237 netTarSyr2,251 netTarSyr2,291 netTarSyr2,313 netTarSyr2,439 netTarSyr2,594 netTarSyr2,629 netTarSyr2,638 netTarSyr2,779 netTarSyr2,857 netTarSyr2,889 netTarSyr2,900 netTarSyr2,909 netTarSyr2,934 netTarSyr2,949 netTarSyr2,974 netTarSyr2,980 netTarSyr2,986 netTarSyr2,993 netTarSyr2,999 netTarSyr2,1063 netTarSyr2,1068 refSeqComposite,8 refSeqComposite,22 refSeqComposite,72 refSeqComposite,110 refSeqComposite,120 refSeqComposite,143 refSeqComposite,192 refSeqComposite,203 refSeqComposite,231 refSeqComposite,257 refSeqComposite,265 refSeqComposite,273 refSeqComposite,301 refSeqComposite,365 refSeqComposite,469 refSeqComposite,493 refSeqComposite,575 refSeqComposite,594 refSeqComposite,657 refSeqComposite,667 refSeqComposite,707 refSeqComposite,719 refSeqComposite,805 refSeqComposite,830 refSeqComposite,863 refSeqComposite,883 refSeqComposite,915 refSeqComposite,957 refSeqComposite,973 refSeqComposite,996 refSeqComposite,1011 refSeqComposite,1128 refSeqComposite,1147 refSeqComposite,1173 refSeqComposite,1178 refSeqComposite,1278 refSeqComposite,1373 refSeqComposite,1475 refSeqComposite,1493 refSeqComposite,1633 refSeqComposite,1674 refSeqComposite,1724 refSeqComposite,1810 rmsk,7 rmsk,28 rmsk,137 rmsk,221 rmsk,332 rmsk,338 rmsk,369 rmsk,398 simpleRepeat,9 simpleRepeat,42 transMapEnsemblV5,5 transMapEnsemblV5,11 transMapEnsemblV5,43 transMapEnsemblV5,94 transMapEnsemblV5,174 transMapEnsemblV5,199 transMapEnsemblV5,366 transMapEnsemblV5,368 transMapEnsemblV5,392 transMapEnsemblV5,409 transMapEnsemblV5,435 transMapEnsemblV5,466 transMapEnsemblV5,482 transMapEnsemblV5,497 transMapEnsemblV5,554 transMapEnsemblV5,639 transMapEnsemblV5,688 transMapEnsemblV5,702 transMapEnsemblV5,709 transMapEnsemblV5,767 transMapEstV5,9 transMapEstV5,63 transMapEstV5,143 transMapEstV5,168 transMapEstV5,335 transMapEstV5,337 transMapEstV5,361 transMapEstV5,378 transMapEstV5,404 transMapEstV5,435 transMapEstV5,451 transMapEstV5,466 transMapEstV5,523 transMapEstV5,608 transMapEstV5,657 transMapEstV5,671 transMapEstV5,678 transMapEstV5,736 transMapRefSeqV5,10 transMapRefSeqV5,63 transMapRefSeqV5,143 transMapRefSeqV5,168 transMapRefSeqV5,335 transMapRefSeqV5,337 transMapRefSeqV5,361 transMapRefSeqV5,378 transMapRefSeqV5,404 transMapRefSeqV5,435 transMapRefSeqV5,451 transMapRefSeqV5,466 transMapRefSeqV5,523 transMapRefSeqV5,608 transMapRefSeqV5,657 transMapRefSeqV5,671 transMapRefSeqV5,678 transMapRefSeqV5,736 transMapRnaV5,10 transMapRnaV5,63 transMapRnaV5,143 transMapRnaV5,168 transMapRnaV5,335 transMapRnaV5,337 transMapRnaV5,361 transMapRnaV5,378 transMapRnaV5,404 transMapRnaV5,435 transMapRnaV5,451 transMapRnaV5,466 transMapRnaV5,523 transMapRnaV5,608 transMapRnaV5,657 transMapRnaV5,671 transMapRnaV5,678 transMapRnaV5,736 transMapV5,8 transMapV5,16 transMapV5,74 transMapV5,88 transMapV5,139 transMapV5,162 transMapV5,169 transMapV5,249 transMapV5,274 transMapV5,441 transMapV5,443 transMapV5,467 transMapV5,484 transMapV5,510 transMapV5,541 transMapV5,557 transMapV5,572 transMapV5,629 transMapV5,714 transMapV5,763 transMapV5,777 transMapV5,784 transMapV5,842 ucscToINSDC,11 ucscToRefSeq,6 unipAliSwissprot,19 unipAliTrembl,11 unipChain,9 unipConflict,7 unipDisulfBond,7 unipDomain,5 unipInterest,7 unipLocCytopl,6 unipLocExtra,6 unipLocSignal,7 unipLocTransMemb,6 unipModif,8 unipMut,7 unipOther,7 unipRepeat,5 unipStruct,9 uniprot,8 uniprot,17 uniprot,174 uniprot,329 uniprot,345 uniprot,355 uniprot,369 uniprot,378 uniprot,403 uniprot,433 uniprot,439 uniprot,448 uniprot,488 uniprot,517 uniprot,568 uniprot,589 uniprot,611 uniprot,617 uniprot,702 uniprot,761 uniprot,796 uniprot,866 uniprot,926 uniprot,939 uniprot,1122 uniprot,1214 uniprot,1310 uniprot,1342 uniprot,1375 uniprot,1420 uniprot,1465 uniprot,1498 uniprot,1598 uniprot,1617 uniprot,1650 uniprot,1691 uniprot,1790 uniprot,1898 uniprot,1958 uniprot,1970 uniprot,2028 uniprot,2036 windowmaskerSdust,10 xenoMrna,9 xenoMrna,20 xenoMrna,33 xenoMrna,152 xenoMrna,313 xenoMrna,432 xenoMrna,503 xenoRefGene,8 xenoRefGene,17 xenoRefGene,45 xenoRefGene,79 xenoRefGene,129 xenoRefGene,154 xenoRefGene,187 xenoRefGene,200 xenoRefGene,268 xenoRefGene,295 xenoRefGene,380 annot unipOther,2 annotate HLTOGAannotvHg38v1,100 annotated HLTOGAannotvHg38v1,133 refSeqComposite,558 rmsk,67 uniprot,736 uniprot,994 uniprot,1014 uniprot,1027 uniprot,1034 uniprot,1040 uniprot,1053 uniprot,1082 uniprot,1233 uniprot,1265 annotation HLTOGAannotvHg38v1,31 HLTOGAannotvHg38v1,48 HLTOGAannotvHg38v1,358 chainHg38,302 chainMm10,302 chainNetHg38,305 chainNetMm10,305 chainNetTarSyr2,305 chainTarSyr2,302 ensGene,165 netHg38,302 netMm10,302 netTarSyr2,302 refSeqComposite,67 refSeqComposite,668 refSeqComposite,1117 refSeqComposite,1146 refSeqComposite,1192 rmsk,38 transMapEnsemblV5,609 transMapEstV5,578 transMapRefSeqV5,578 transMapRnaV5,578 transMapV5,684 uniprot,143 uniprot,466 uniprot,487 uniprot,530 uniprot,605 uniprot,624 uniprot,1731 annotationonprotein uniprot,1929 annotations HLTOGAannotvHg38v1,5 ensGene,156 genscan,120 ncbiRefSeqOther,6 nestedRepeats,71 refSeqComposite,191 refSeqComposite,197 refSeqComposite,205 refSeqComposite,220 refSeqComposite,349 refSeqComposite,383 refSeqComposite,483 refSeqComposite,864 refSeqComposite,1471 refSeqComposite,1503 refSeqComposite,1539 transMapEnsemblV5,60 transMapEnsemblV5,542 transMapEnsemblV5,703 transMapEnsemblV5,711 transMapEstV5,511 transMapEstV5,672 transMapEstV5,680 transMapRefSeqV5,511 transMapRefSeqV5,672 transMapRefSeqV5,680 transMapRnaV5,511 transMapRnaV5,672 transMapRnaV5,680 transMapV5,76 transMapV5,617 transMapV5,778 transMapV5,786 unipOther,5 unipStruct,7 uniprot,6 uniprot,18 uniprot,54 uniprot,96 uniprot,128 uniprot,171 uniprot,212 uniprot,363 uniprot,394 uniprot,397 uniprot,455 uniprot,501 uniprot,595 uniprot,631 uniprot,662 uniprot,704 uniprot,718 uniprot,763 uniprot,1438 uniprot,1504 uniprot,1514 uniprot,1757 xenoRefGene,188 another refSeqComposite,327 transMapV5,81 any mrna,262 refSeqComposite,274 refSeqComposite,1356 uniprot,660 uniprot,1146 uniprot,1250 xenoMrna,336 api cpgIslandExt,519 cpgIslandExtUnmasked,522 cpgIslandSuper,519 ensGene,109 refSeqComposite,1312 refSeqComposite,1366 transMapEnsemblV5,566 transMapEstV5,535 transMapRefSeqV5,535 transMapRnaV5,535 transMapV5,641 appending transMapEnsemblV5,399 transMapEstV5,368 transMapRefSeqV5,368 transMapRnaV5,368 transMapV5,474 apply mrna,134 xenoMrna,208 approach uniprot,1531 appropriate refSeqComposite,775 xenoRefGene,112 apr HLTOGAannotvHg38v1,366 genscan,224 mrna,528 refSeqComposite,1742 xenoMrna,602 xenoRefGene,312 apsects gc5BaseBw,51 arbitrary refSeqComposite,941 archive ensGene,142 refSeqComposite,1708 uniprot,893 uniprot,1670 uniprot,1908 archives refSeqComposite,1347 refSeqComposite,1692 uniprot,1832 are HLTOGAannotvHg38v1,204 HLTOGAannotvHg38v1,277 augustusGene,27 chainHg38,21 chainHg38,40 chainHg38,53 chainHg38,142 chainHg38,212 chainHg38,223 chainHg38,324 chainHg38,393 chainHg38,414 chainHg38,421 chainHg38,504 chainHg38,695 chainMm10,21 chainMm10,40 chainMm10,53 chainMm10,142 chainMm10,212 chainMm10,223 chainMm10,324 chainMm10,393 chainMm10,414 chainMm10,421 chainMm10,504 chainMm10,695 chainNetHg38,24 chainNetHg38,43 chainNetHg38,56 chainNetHg38,145 chainNetHg38,215 chainNetHg38,226 chainNetHg38,327 chainNetHg38,396 chainNetHg38,417 chainNetHg38,424 chainNetHg38,507 chainNetHg38,698 chainNetMm10,24 chainNetMm10,43 chainNetMm10,56 chainNetMm10,145 chainNetMm10,215 chainNetMm10,226 chainNetMm10,327 chainNetMm10,396 chainNetMm10,417 chainNetMm10,424 chainNetMm10,507 chainNetMm10,698 chainNetTarSyr2,24 chainNetTarSyr2,43 chainNetTarSyr2,56 chainNetTarSyr2,145 chainNetTarSyr2,215 chainNetTarSyr2,226 chainNetTarSyr2,327 chainNetTarSyr2,396 chainNetTarSyr2,417 chainNetTarSyr2,424 chainNetTarSyr2,507 chainNetTarSyr2,698 chainTarSyr2,21 chainTarSyr2,40 chainTarSyr2,53 chainTarSyr2,142 chainTarSyr2,212 chainTarSyr2,223 chainTarSyr2,324 chainTarSyr2,393 chainTarSyr2,414 chainTarSyr2,421 chainTarSyr2,504 chainTarSyr2,695 cpgIslandExt,8 cpgIslandExt,17 cpgIslandExt,28 cpgIslandExt,116 cpgIslandExt,149 cpgIslandExt,153 cpgIslandExtUnmasked,11 cpgIslandExtUnmasked,20 cpgIslandExtUnmasked,31 cpgIslandExtUnmasked,119 cpgIslandExtUnmasked,152 cpgIslandExtUnmasked,156 cpgIslandSuper,8 cpgIslandSuper,17 cpgIslandSuper,28 cpgIslandSuper,116 cpgIslandSuper,149 cpgIslandSuper,153 ensGene,81 ensGene,121 gap,24 gap,69 genscan,25 genscan,160 gold,26 gold,84 gold,101 microsat,16 microsat,25 microsat,52 mrna,48 mrna,95 mrna,105 nestedRepeats,74 nestedRepeats,102 nestedRepeats,140 nestedRepeats,146 nestedRepeats,164 nestedRepeats,172 nestedRepeats,181 nestedRepeats,209 nestedRepeats,274 nestedRepeats,281 netHg38,21 netHg38,40 netHg38,53 netHg38,142 netHg38,212 netHg38,223 netHg38,324 netHg38,393 netHg38,414 netHg38,421 netHg38,504 netHg38,695 netMm10,21 netMm10,40 netMm10,53 netMm10,142 netMm10,212 netMm10,223 netMm10,324 netMm10,393 netMm10,414 netMm10,421 netMm10,504 netMm10,695 netTarSyr2,21 netTarSyr2,40 netTarSyr2,53 netTarSyr2,142 netTarSyr2,212 netTarSyr2,223 netTarSyr2,324 netTarSyr2,393 netTarSyr2,414 netTarSyr2,421 netTarSyr2,504 netTarSyr2,695 refSeqComposite,180 refSeqComposite,233 refSeqComposite,407 refSeqComposite,428 refSeqComposite,768 refSeqComposite,893 refSeqComposite,935 refSeqComposite,999 refSeqComposite,1026 refSeqComposite,1343 refSeqComposite,1377 refSeqComposite,1400 refSeqComposite,1478 rmsk,43 rmsk,288 rmsk,304 rmsk,312 simpleRepeat,49 transMapEnsemblV5,55 transMapEnsemblV5,73 transMapEnsemblV5,454 transMapEnsemblV5,461 transMapEnsemblV5,470 transMapEnsemblV5,504 transMapEnsemblV5,514 transMapEnsemblV5,543 transMapEnsemblV5,582 transMapEstV5,42 transMapEstV5,423 transMapEstV5,430 transMapEstV5,439 transMapEstV5,473 transMapEstV5,483 transMapEstV5,512 transMapEstV5,551 transMapRefSeqV5,42 transMapRefSeqV5,423 transMapRefSeqV5,430 transMapRefSeqV5,439 transMapRefSeqV5,473 transMapRefSeqV5,483 transMapRefSeqV5,512 transMapRefSeqV5,551 transMapRnaV5,42 transMapRnaV5,423 transMapRnaV5,430 transMapRnaV5,439 transMapRnaV5,473 transMapRnaV5,483 transMapRnaV5,512 transMapRnaV5,551 transMapV5,41 transMapV5,69 transMapV5,529 transMapV5,536 transMapV5,545 transMapV5,579 transMapV5,589 transMapV5,618 transMapV5,657 uniprot,55 uniprot,93 uniprot,124 uniprot,146 uniprot,165 uniprot,175 uniprot,208 uniprot,456 uniprot,502 uniprot,555 uniprot,579 uniprot,596 uniprot,644 uniprot,679 uniprot,735 uniprot,868 uniprot,880 uniprot,1006 uniprot,1013 uniprot,1033 uniprot,1061 uniprot,1086 uniprot,1117 uniprot,1149 uniprot,1318 uniprot,1350 uniprot,1425 uniprot,1433 uniprot,1454 uniprot,1659 uniprot,1867 uniprot,1895 xenoMrna,52 xenoMrna,118 xenoMrna,169 xenoMrna,179 xenoRefGene,40 xenoRefGene,105 xenoRefGene,203 areas cpgIslandExt,305 cpgIslandExtUnmasked,308 cpgIslandSuper,305 gc5BaseBw,37 arian chainHg38,947 chainMm10,947 chainNetHg38,950 chainNetMm10,950 chainNetTarSyr2,950 chainTarSyr2,947 nestedRepeats,305 netHg38,947 netMm10,947 netTarSyr2,947 rmsk,16 rmsk,328 arrangement cpgIslandExt,67 cpgIslandExtUnmasked,70 cpgIslandSuper,67 arrows nestedRepeats,145 nestedRepeats,163 articles refSeqComposite,1105 as HLTOGAannotvHg38v1,9 HLTOGAannotvHg38v1,37 HLTOGAannotvHg38v1,42 HLTOGAannotvHg38v1,141 HLTOGAannotvHg38v1,199 HLTOGAannotvHg38v1,259 augustusGene,77 augustusGene,79 chainHg38,466 chainHg38,506 chainHg38,529 chainHg38,544 chainHg38,806 chainHg38,861 chainHg38,919 chainMm10,466 chainMm10,506 chainMm10,529 chainMm10,544 chainMm10,806 chainMm10,861 chainMm10,919 chainNetHg38,469 chainNetHg38,509 chainNetHg38,532 chainNetHg38,547 chainNetHg38,809 chainNetHg38,864 chainNetHg38,922 chainNetMm10,469 chainNetMm10,509 chainNetMm10,532 chainNetMm10,547 chainNetMm10,809 chainNetMm10,864 chainNetMm10,922 chainNetTarSyr2,469 chainNetTarSyr2,509 chainNetTarSyr2,532 chainNetTarSyr2,547 chainNetTarSyr2,809 chainNetTarSyr2,864 chainNetTarSyr2,922 chainTarSyr2,466 chainTarSyr2,506 chainTarSyr2,529 chainTarSyr2,544 chainTarSyr2,806 chainTarSyr2,861 chainTarSyr2,919 cpgIslandExt,165 cpgIslandExt,548 cpgIslandExt,550 cpgIslandExtUnmasked,168 cpgIslandExtUnmasked,551 cpgIslandExtUnmasked,553 cpgIslandSuper,165 cpgIslandSuper,548 cpgIslandSuper,550 ensGene,87 gap,71 genscan,35 genscan,37 microsat,21 nestedRepeats,125 netHg38,466 netHg38,506 netHg38,529 netHg38,544 netHg38,806 netHg38,861 netHg38,919 netMm10,466 netMm10,506 netMm10,529 netMm10,544 netMm10,806 netMm10,861 netMm10,919 netTarSyr2,466 netTarSyr2,506 netTarSyr2,529 netTarSyr2,544 netTarSyr2,806 netTarSyr2,861 netTarSyr2,919 refSeqComposite,414 refSeqComposite,506 refSeqComposite,526 refSeqComposite,539 refSeqComposite,626 refSeqComposite,894 refSeqComposite,1223 refSeqComposite,1405 refSeqComposite,1521 refSeqComposite,1641 rmsk,53 rmsk,55 transMapEnsemblV5,65 transMapEnsemblV5,188 transMapEnsemblV5,215 transMapEnsemblV5,227 transMapEnsemblV5,516 transMapEnsemblV5,627 transMapEstV5,157 transMapEstV5,184 transMapEstV5,196 transMapEstV5,485 transMapEstV5,596 transMapRefSeqV5,157 transMapRefSeqV5,184 transMapRefSeqV5,196 transMapRefSeqV5,485 transMapRefSeqV5,596 transMapRnaV5,157 transMapRnaV5,184 transMapRnaV5,196 transMapRnaV5,485 transMapRnaV5,596 transMapV5,263 transMapV5,290 transMapV5,302 transMapV5,591 transMapV5,702 uniprot,307 uniprot,598 uniprot,600 uniprot,621 uniprot,1100 uniprot,1778 windowmaskerSdust,18 xenoMrna,125 xenoMrna,130 ascii uniprot,1762 ask refSeqComposite,123 aspect refSeqComposite,709 assemblies augustusGene,196 augustusGene,237 chainHg38,323 chainHg38,586 chainMm10,323 chainMm10,586 chainNetHg38,326 chainNetHg38,589 chainNetMm10,326 chainNetMm10,589 chainNetTarSyr2,326 chainNetTarSyr2,589 chainTarSyr2,323 chainTarSyr2,586 netHg38,323 netHg38,586 netMm10,323 netMm10,586 netTarSyr2,323 netTarSyr2,586 refSeqComposite,184 rmsk,107 transMapEnsemblV5,193 transMapEstV5,162 transMapRefSeqV5,162 transMapRnaV5,162 transMapV5,268 assembly HLTOGAannotvHg38v1,209 augustusGene,197 chainHg38,151 chainHg38,159 chainHg38,310 chainMm10,151 chainMm10,159 chainMm10,310 chainNetHg38,154 chainNetHg38,162 chainNetHg38,313 chainNetMm10,154 chainNetMm10,162 chainNetMm10,313 chainNetTarSyr2,154 chainNetTarSyr2,162 chainNetTarSyr2,313 chainTarSyr2,151 chainTarSyr2,159 chainTarSyr2,310 gap,20 gap,22 gap,29 gap,38 gap,46 gap,117 gold,1 gold,2 gold,22 gold,24 gold,31 gold,40 gold,45 netHg38,151 netHg38,159 netHg38,310 netMm10,151 netMm10,159 netMm10,310 netTarSyr2,151 netTarSyr2,159 netTarSyr2,310 refSeqComposite,371 refSeqComposite,479 transMapV5,106 transMapV5,124 transMapV5,135 ucscToINSDC,40 ucscToRefSeq,34 uniprot,445 uniprot,701 assembly.2bit cpgIslandExt,412 cpgIslandExtUnmasked,415 cpgIslandSuper,412 assessing refSeqComposite,653 assigned transMapEnsemblV5,462 transMapEstV5,431 transMapRefSeqV5,431 transMapRnaV5,431 transMapV5,537 associated cpgIslandExt,18 cpgIslandExt,38 cpgIslandExt,510 cpgIslandExtUnmasked,21 cpgIslandExtUnmasked,41 cpgIslandExtUnmasked,513 cpgIslandSuper,18 cpgIslandSuper,38 cpgIslandSuper,510 gc5BaseBw,34 refSeqComposite,1401 rmsk,224 simpleRepeat,51 transMapEnsemblV5,583 transMapEstV5,552 transMapRefSeqV5,552 transMapRnaV5,552 transMapV5,658 uniprot,787 associates ucscToINSDC,16 ucscToRefSeq,11 association refSeqComposite,685 astashyn refSeqComposite,1758 xenoRefGene,328 at HLTOGAannotvHg38v1,362 chainHg38,423 chainHg38,801 chainHg38,923 chainHg38,958 chainHg38,963 chainHg38,1004 chainMm10,423 chainMm10,801 chainMm10,923 chainMm10,958 chainMm10,963 chainMm10,1004 chainNetHg38,426 chainNetHg38,804 chainNetHg38,926 chainNetHg38,961 chainNetHg38,966 chainNetHg38,1007 chainNetMm10,426 chainNetMm10,804 chainNetMm10,926 chainNetMm10,961 chainNetMm10,966 chainNetMm10,1007 chainNetTarSyr2,426 chainNetTarSyr2,804 chainNetTarSyr2,926 chainNetTarSyr2,961 chainNetTarSyr2,966 chainNetTarSyr2,1007 chainTarSyr2,423 chainTarSyr2,801 chainTarSyr2,923 chainTarSyr2,958 chainTarSyr2,963 chainTarSyr2,1004 cpgIslandExt,155 cpgIslandExt,218 cpgIslandExt,235 cpgIslandExtUnmasked,158 cpgIslandExtUnmasked,221 cpgIslandExtUnmasked,238 cpgIslandSuper,155 cpgIslandSuper,218 cpgIslandSuper,235 microsat,28 microsat,77 mrna,211 mrna,430 mrna,447 netHg38,423 netHg38,801 netHg38,923 netHg38,958 netHg38,963 netHg38,1004 netMm10,423 netMm10,801 netMm10,923 netMm10,958 netMm10,963 netMm10,1004 netTarSyr2,423 netTarSyr2,801 netTarSyr2,923 netTarSyr2,958 netTarSyr2,963 netTarSyr2,1004 refSeqComposite,735 refSeqComposite,1050 refSeqComposite,1154 refSeqComposite,1279 refSeqComposite,1716 rmsk,243 rmsk,267 transMapEnsemblV5,295 transMapEnsemblV5,684 transMapEstV5,264 transMapEstV5,653 transMapRefSeqV5,264 transMapRefSeqV5,653 transMapRnaV5,264 transMapRnaV5,653 transMapV5,118 transMapV5,370 transMapV5,759 ucscToINSDC,3 uniprot,825 uniprot,1946 uniprot,1991 xenoMrna,285 xenoMrna,504 xenoMrna,521 xenoRefGene,93 xenoRefGene,269 xenoRefGene,285 augustus augustusGene,1 augustusGene,2 augustusGene,22 augustusGene,148 augustusGene,256 uniprot,835 uniprot,867 auml windowmaskerSdust,95 automated transMapEnsemblV5,539 transMapEstV5,508 transMapRefSeqV5,508 transMapRnaV5,508 transMapV5,614 uniprot,1468 uniprot,1727 automatically uniprot,1565 av uniprot,2015 available HLTOGAannotvHg38v1,329 augustusGene,239 cpgIslandExt,543 cpgIslandExtUnmasked,546 cpgIslandSuper,543 ensGene,82 ensGene,122 nestedRepeats,259 nestedRepeats,276 refSeqComposite,181 refSeqComposite,277 refSeqComposite,476 refSeqComposite,569 refSeqComposite,654 refSeqComposite,1344 refSeqComposite,1596 rmsk,73 transMapEnsemblV5,189 transMapEnsemblV5,247 transMapEstV5,158 transMapEstV5,216 transMapRefSeqV5,158 transMapRefSeqV5,216 transMapRnaV5,158 transMapRnaV5,216 transMapV5,264 transMapV5,322 uniprot,881 uniprot,1660 uniprot,1981 windowmaskerSdust,40 average nestedRepeats,186 nestedRepeats,221 aw HLTOGAannotvHg38v1,349 aware uniprot,1456 awk cpgIslandExt,424 cpgIslandExtUnmasked,427 cpgIslandSuper,424 axt chainHg38,607 chainHg38,614 chainMm10,607 chainMm10,614 chainNetHg38,610 chainNetHg38,617 chainNetMm10,610 chainNetMm10,617 chainNetTarSyr2,610 chainNetTarSyr2,617 chainTarSyr2,607 chainTarSyr2,614 netHg38,607 netHg38,614 netMm10,607 netMm10,614 netTarSyr2,607 netTarSyr2,614 axtchain chainHg38,619 chainHg38,706 chainHg38,954 chainMm10,619 chainMm10,706 chainMm10,954 chainNetHg38,622 chainNetHg38,709 chainNetHg38,957 chainNetMm10,622 chainNetMm10,709 chainNetMm10,957 chainNetTarSyr2,622 chainNetTarSyr2,709 chainNetTarSyr2,957 chainTarSyr2,619 chainTarSyr2,706 chainTarSyr2,954 netHg38,619 netHg38,706 netHg38,954 netMm10,619 netMm10,706 netMm10,954 netTarSyr2,619 netTarSyr2,706 netTarSyr2,954 b transMapEnsemblV5,720 transMapEnsemblV5,730 transMapEstV5,689 transMapEstV5,699 transMapRefSeqV5,689 transMapRefSeqV5,699 transMapRnaV5,689 transMapRnaV5,699 transMapV5,795 transMapV5,805 back chainHg38,599 chainMm10,599 chainNetHg38,602 chainNetMm10,602 chainNetTarSyr2,602 chainTarSyr2,599 netHg38,599 netMm10,599 netTarSyr2,599 baertsch augustusGene,290 chainHg38,992 chainHg38,1050 chainHg38,1096 chainMm10,992 chainMm10,1050 chainMm10,1096 chainNetHg38,995 chainNetHg38,1053 chainNetHg38,1099 chainNetMm10,995 chainNetMm10,1053 chainNetMm10,1099 chainNetTarSyr2,995 chainNetTarSyr2,1053 chainNetTarSyr2,1099 chainTarSyr2,992 chainTarSyr2,1050 chainTarSyr2,1096 netHg38,992 netHg38,1050 netHg38,1096 netMm10,992 netMm10,1050 netMm10,1096 netTarSyr2,992 netTarSyr2,1050 netTarSyr2,1096 transMapEnsemblV5,761 transMapEstV5,730 transMapRefSeqV5,730 transMapRnaV5,730 transMapV5,836 bairoch uniprot,2022 band cytoBandIdeo,2 barker ensGene,170 base cpgIslandExt,46 cpgIslandExt,53 cpgIslandExt,234 cpgIslandExtUnmasked,49 cpgIslandExtUnmasked,56 cpgIslandExtUnmasked,237 cpgIslandSuper,46 cpgIslandSuper,53 cpgIslandSuper,234 mrna,359 mrna,413 mrna,421 mrna,433 refSeqComposite,1262 refSeqComposite,1270 refSeqComposite,1282 rmsk,217 rmsk,219 rmsk,222 xenoMrna,433 xenoMrna,486 xenoMrna,495 xenoMrna,507 xenoRefGene,252 xenoRefGene,260 xenoRefGene,272 base-level transMapEnsemblV5,321 transMapEstV5,290 transMapRefSeqV5,290 transMapRnaV5,290 transMapV5,396 based augustusGene,28 chainHg38,326 chainHg38,352 chainMm10,326 chainMm10,352 chainNetHg38,329 chainNetHg38,355 chainNetMm10,329 chainNetMm10,355 chainNetTarSyr2,329 chainNetTarSyr2,355 chainTarSyr2,326 chainTarSyr2,352 genscan,26 netHg38,326 netHg38,352 netMm10,326 netMm10,352 netTarSyr2,326 netTarSyr2,352 refSeqComposite,252 refSeqComposite,360 uniprot,60 uniprot,727 uniprot,1604 bases cpgIslandExt,7 cpgIslandExt,353 cpgIslandExtUnmasked,10 cpgIslandExtUnmasked,356 cpgIslandSuper,7 cpgIslandSuper,353 gap,140 gc5BaseBw,25 refSeqComposite,901 transMapV5,166 basis cpgIslandExt,289 cpgIslandExtUnmasked,292 cpgIslandSuper,289 uniprot,1570 bc149621.1 transMapEnsemblV5,459 transMapEstV5,428 transMapRefSeqV5,428 transMapRnaV5,428 transMapV5,534 bc149621.1-1 transMapEnsemblV5,465 transMapEnsemblV5,476 transMapEstV5,434 transMapEstV5,445 transMapRefSeqV5,434 transMapRefSeqV5,445 transMapRnaV5,434 transMapRnaV5,445 transMapV5,540 transMapV5,551 bc149621.1-1.1 transMapEnsemblV5,487 transMapEstV5,456 transMapRefSeqV5,456 transMapRnaV5,456 transMapV5,562 bc149621.1-2 transMapEnsemblV5,467 transMapEnsemblV5,489 transMapEstV5,436 transMapEstV5,458 transMapRefSeqV5,436 transMapRefSeqV5,458 transMapRnaV5,436 transMapRnaV5,458 transMapV5,542 transMapV5,564 bc149621.1-2.1 transMapEnsemblV5,496 transMapEstV5,465 transMapRefSeqV5,465 transMapRnaV5,465 transMapV5,571 bc149621.1-2.2 transMapEnsemblV5,498 transMapEstV5,467 transMapRefSeqV5,467 transMapRnaV5,467 transMapV5,573 be augustusGene,99 chainHg38,108 chainHg38,433 chainMm10,108 chainMm10,433 chainNetHg38,111 chainNetHg38,436 chainNetMm10,111 chainNetMm10,436 chainNetTarSyr2,111 chainNetTarSyr2,436 chainTarSyr2,108 chainTarSyr2,433 cpgIslandExt,37 cpgIslandExt,70 cpgIslandExt,187 cpgIslandExt,513 cpgIslandExt,532 cpgIslandExt,561 cpgIslandExt,572 cpgIslandExtUnmasked,40 cpgIslandExtUnmasked,73 cpgIslandExtUnmasked,190 cpgIslandExtUnmasked,516 cpgIslandExtUnmasked,535 cpgIslandExtUnmasked,564 cpgIslandExtUnmasked,575 cpgIslandSuper,37 cpgIslandSuper,70 cpgIslandSuper,187 cpgIslandSuper,513 cpgIslandSuper,532 cpgIslandSuper,561 cpgIslandSuper,572 ensGene,61 ensGene,104 ensGene,138 gc5BaseBw,41 microsat,19 microsat,39 mrna,68 mrna,90 mrna,199 mrna,209 mrna,220 mrna,251 mrna,269 mrna,279 mrna,328 mrna,372 nestedRepeats,269 nestedRepeats,291 netHg38,108 netHg38,433 netMm10,108 netMm10,433 netTarSyr2,108 netTarSyr2,433 refSeqComposite,304 refSeqComposite,729 refSeqComposite,939 refSeqComposite,970 refSeqComposite,1030 refSeqComposite,1107 refSeqComposite,1195 refSeqComposite,1299 refSeqComposite,1306 refSeqComposite,1322 refSeqComposite,1394 refSeqComposite,1454 refSeqComposite,1485 refSeqComposite,1505 refSeqComposite,1513 refSeqComposite,1587 refSeqComposite,1609 refSeqComposite,1679 refSeqComposite,1704 rmsk,278 rmsk,284 rmsk,298 simpleRepeat,44 transMapEnsemblV5,63 transMapEnsemblV5,110 transMapEnsemblV5,145 transMapEnsemblV5,527 transMapEnsemblV5,556 transMapEnsemblV5,611 transMapEnsemblV5,619 transMapEnsemblV5,642 transMapEnsemblV5,649 transMapEstV5,79 transMapEstV5,114 transMapEstV5,496 transMapEstV5,525 transMapEstV5,580 transMapEstV5,588 transMapEstV5,611 transMapEstV5,618 transMapRefSeqV5,79 transMapRefSeqV5,114 transMapRefSeqV5,496 transMapRefSeqV5,525 transMapRefSeqV5,580 transMapRefSeqV5,588 transMapRefSeqV5,611 transMapRefSeqV5,618 transMapRnaV5,79 transMapRnaV5,114 transMapRnaV5,496 transMapRnaV5,525 transMapRnaV5,580 transMapRnaV5,588 transMapRnaV5,611 transMapRnaV5,618 transMapV5,185 transMapV5,220 transMapV5,602 transMapV5,631 transMapV5,686 transMapV5,694 transMapV5,717 transMapV5,724 uniprot,181 uniprot,246 uniprot,1094 uniprot,1105 uniprot,1143 uniprot,1197 uniprot,1270 uniprot,1327 uniprot,1556 uniprot,1694 uniprot,1715 uniprot,1740 uniprot,1750 uniprot,1759 uniprot,1770 uniprot,1793 uniprot,1800 uniprot,1882 xenoMrna,142 xenoMrna,164 xenoMrna,273 xenoMrna,283 xenoMrna,294 xenoMrna,325 xenoMrna,343 xenoMrna,353 xenoMrna,402 xenoMrna,446 xenoRefGene,88 because cpgIslandExt,61 cpgIslandExt,107 cpgIslandExtUnmasked,64 cpgIslandExtUnmasked,110 cpgIslandSuper,61 cpgIslandSuper,107 uniprot,674 xenoMrna,104 bed3 windowmaskerSdust,76 been chainHg38,574 chainMm10,574 chainNetHg38,577 chainNetMm10,577 chainNetTarSyr2,577 chainTarSyr2,574 nestedRepeats,89 netHg38,574 netMm10,574 netTarSyr2,574 refSeqComposite,639 refSeqComposite,677 refSeqComposite,687 refSeqComposite,702 rmsk,70 rmsk,109 uniprot,34 uniprot,47 uniprot,303 uniprot,1043 before chainHg38,908 chainMm10,908 chainNetHg38,911 chainNetMm10,911 chainNetTarSyr2,911 chainTarSyr2,908 netHg38,908 netMm10,908 netTarSyr2,908 uniprot,934 begin refSeqComposite,223 refSeqComposite,352 beginning refSeqComposite,1052 refSeqComposite,1650 beloow refSeqComposite,338 below chainHg38,682 chainMm10,682 chainNetHg38,685 chainNetMm10,685 chainNetTarSyr2,685 chainTarSyr2,682 ensGene,54 genscan,154 genscan,168 nestedRepeats,68 netHg38,682 netMm10,682 netTarSyr2,682 refSeqComposite,1396 refSeqComposite,1533 rmsk,104 uniprot,73 uniprot,92 uniprot,189 uniprot,207 uniprot,769 uniprot,898 benson microsat,102 microsat,112 microsat,114 mrna,464 mrna,492 simpleRepeat,64 simpleRepeat,72 simpleRepeat,74 xenoMrna,538 xenoMrna,566 best chainHg38,269 chainHg38,516 chainMm10,269 chainMm10,516 chainNetHg38,272 chainNetHg38,519 chainNetMm10,272 chainNetMm10,519 chainNetTarSyr2,272 chainNetTarSyr2,519 chainTarSyr2,269 chainTarSyr2,516 mrna,428 netHg38,269 netHg38,516 netMm10,269 netMm10,516 netTarSyr2,269 netTarSyr2,516 refSeqComposite,1277 transMapEnsemblV5,242 transMapEstV5,211 transMapRefSeqV5,211 transMapRnaV5,211 transMapV5,67 transMapV5,317 uniprot,1074 uniprot,1415 xenoMrna,502 xenoRefGene,267 beta uniprot,364 better mrna,55 xenoMrna,59 between HLTOGAannotvHg38v1,66 chainHg38,51 chainHg38,624 chainHg38,855 chainMm10,51 chainMm10,624 chainMm10,855 chainNetHg38,54 chainNetHg38,627 chainNetHg38,858 chainNetMm10,54 chainNetMm10,627 chainNetMm10,858 chainNetTarSyr2,54 chainNetTarSyr2,627 chainNetTarSyr2,858 chainTarSyr2,51 chainTarSyr2,624 chainTarSyr2,855 gap,127 gold,98 gold,103 mrna,18 ncbiRefSeqGenomicDiff,4 netHg38,51 netHg38,624 netHg38,855 netMm10,51 netMm10,624 netMm10,855 netTarSyr2,51 netTarSyr2,624 netTarSyr2,855 refSeqComposite,65 refSeqComposite,462 refSeqComposite,878 uniprot,375 uniprot,922 uniprot,1371 uniprot,1615 bias uniprot,400 bigbed refSeqComposite,1380 refSeqComposite,1391 refSeqComposite,1481 uniprot,1736 bigbedtobed refSeqComposite,1510 refSeqComposite,1550 transMapEnsemblV5,616 transMapEnsemblV5,661 transMapEstV5,585 transMapEstV5,630 transMapRefSeqV5,585 transMapRefSeqV5,630 transMapRnaV5,585 transMapRnaV5,630 transMapV5,691 transMapV5,736 uniprot,1767 uniprot,1812 bigpsl transMapEnsemblV5,546 transMapEstV5,515 transMapRefSeqV5,515 transMapRnaV5,515 transMapV5,621 bin refSeqComposite,1436 refSeqComposite,1466 binaries transMapEnsemblV5,640 transMapEstV5,609 transMapRefSeqV5,609 transMapRnaV5,609 transMapV5,715 uniprot,1791 binary cpgIslandExt,570 cpgIslandExtUnmasked,573 cpgIslandSuper,570 refSeqComposite,1524 transMapEnsemblV5,630 transMapEstV5,599 transMapRefSeqV5,599 transMapRnaV5,599 transMapV5,705 uniprot,1781 biocomput chainHg38,1043 chainMm10,1043 chainNetHg38,1046 chainNetMm10,1046 chainNetTarSyr2,1046 chainTarSyr2,1043 netHg38,1043 netMm10,1043 netTarSyr2,1043 bioinformatics augustusGene,307 augustusGene,332 transMapEnsemblV5,778 transMapEstV5,747 transMapRefSeqV5,747 transMapRnaV5,747 transMapV5,853 windowmaskerSdust,106 biol cpgIslandExt,615 cpgIslandExtUnmasked,618 cpgIslandSuper,615 genscan,222 transMapEnsemblV5,813 transMapEstV5,782 transMapRefSeqV5,782 transMapRnaV5,782 transMapV5,888 biological uniprot,320 biology genscan,200 birds HLTOGAannotvHg38v1,60 augustusGene,203 birney ensGene,172 black gap,72 gap,111 blast uniprot,949 uniprot,1084 uniprot,1115 blast-like mrna,522 refSeqComposite,1736 xenoMrna,596 xenoRefGene,306 blastz chainHg38,920 chainHg38,1107 chainMm10,920 chainMm10,1107 chainNetHg38,923 chainNetHg38,1110 chainNetMm10,923 chainNetMm10,1110 chainNetTarSyr2,923 chainNetTarSyr2,1110 chainTarSyr2,920 chainTarSyr2,1107 netHg38,920 netHg38,1107 netMm10,920 netMm10,1107 netTarSyr2,920 netTarSyr2,1107 transMapEnsemblV5,78 transMapEnsemblV5,196 transMapEstV5,47 transMapEstV5,165 transMapRefSeqV5,47 transMapRefSeqV5,165 transMapRnaV5,47 transMapRnaV5,165 transMapV5,48 transMapV5,144 transMapV5,271 blat mrna,398 mrna,520 refSeqComposite,1238 refSeqComposite,1734 transMapEnsemblV5,167 transMapEstV5,136 transMapRefSeqV5,136 transMapRnaV5,136 transMapV5,126 transMapV5,150 transMapV5,157 transMapV5,242 xenoMrna,16 xenoMrna,472 xenoMrna,594 xenoRefGene,228 blat--the xenoRefGene,305 blocks chainHg38,44 chainHg38,647 chainHg38,668 chainMm10,44 chainMm10,647 chainMm10,668 chainNetHg38,47 chainNetHg38,650 chainNetHg38,671 chainNetMm10,47 chainNetMm10,650 chainNetMm10,671 chainNetTarSyr2,47 chainNetTarSyr2,650 chainNetTarSyr2,671 chainTarSyr2,44 chainTarSyr2,647 chainTarSyr2,668 gold,108 gold,135 netHg38,44 netHg38,647 netHg38,668 netMm10,44 netMm10,647 netMm10,668 netTarSyr2,44 netTarSyr2,647 netTarSyr2,668 blog cpgIslandExt,553 cpgIslandExtUnmasked,556 cpgIslandSuper,553 ensGene,131 blue unipAliSwissprot,11 unipAliSwissprot,15 uniprot,507 uniprot,583 blumer HLTOGAannotvHg38v1,344 bm HLTOGAannotvHg38v1,335 bond uniprot,473 bonds unipDisulfBond,2 unipDisulfBond,5 uniprot,334 uniprot,336 both chainHg38,96 chainHg38,117 chainHg38,171 chainHg38,898 chainMm10,96 chainMm10,117 chainMm10,171 chainMm10,898 chainNetHg38,99 chainNetHg38,120 chainNetHg38,174 chainNetHg38,901 chainNetMm10,99 chainNetMm10,120 chainNetMm10,174 chainNetMm10,901 chainNetTarSyr2,99 chainNetTarSyr2,120 chainNetTarSyr2,174 chainNetTarSyr2,901 chainTarSyr2,96 chainTarSyr2,117 chainTarSyr2,171 chainTarSyr2,898 netHg38,96 netHg38,117 netHg38,171 netHg38,898 netMm10,96 netMm10,117 netMm10,171 netMm10,898 netTarSyr2,96 netTarSyr2,117 netTarSyr2,171 netTarSyr2,898 transMapEnsemblV5,512 transMapEstV5,481 transMapRefSeqV5,481 transMapRnaV5,481 transMapV5,587 uniprot,675 uniprot,1616 xenoRefGene,126 xenoRefGene,197 bothgap chainHg38,749 chainMm10,749 chainNetHg38,752 chainNetMm10,752 chainNetTarSyr2,752 chainTarSyr2,749 netHg38,749 netMm10,749 netTarSyr2,749 boundaries HLTOGAannotvHg38v1,111 gold,83 box chainHg38,376 chainHg38,458 chainMm10,376 chainMm10,458 chainNetHg38,379 chainNetHg38,461 chainNetMm10,379 chainNetMm10,461 chainNetTarSyr2,379 chainNetTarSyr2,461 chainTarSyr2,376 chainTarSyr2,458 gap,112 mrna,154 mrna,165 mrna,205 netHg38,376 netHg38,458 netMm10,376 netMm10,458 netTarSyr2,376 netTarSyr2,458 xenoMrna,228 xenoMrna,239 xenoMrna,279 xenoRefGene,216 boxes chainHg38,123 chainHg38,133 chainHg38,447 chainMm10,123 chainMm10,133 chainMm10,447 chainNetHg38,126 chainNetHg38,136 chainNetHg38,450 chainNetMm10,126 chainNetMm10,136 chainNetMm10,450 chainNetTarSyr2,126 chainNetTarSyr2,136 chainNetTarSyr2,450 chainTarSyr2,123 chainTarSyr2,133 chainTarSyr2,447 gap,73 mrna,125 nestedRepeats,126 netHg38,123 netHg38,133 netHg38,447 netMm10,123 netMm10,133 netMm10,447 netTarSyr2,123 netTarSyr2,133 netTarSyr2,447 refSeqComposite,166 xenoMrna,199 bp cpgIslandExt,272 cpgIslandExtUnmasked,275 cpgIslandSuper,272 refSeqComposite,946 branch transMapEnsemblV5,220 transMapEstV5,189 transMapRefSeqV5,189 transMapRnaV5,189 transMapV5,295 branch-point augustusGene,55 brejov transMapEnsemblV5,718 transMapEstV5,687 transMapRefSeqV5,687 transMapRnaV5,687 transMapV5,793 brian uniprot,1959 bridge gold,133 bridged gap,101 briefly uniprot,778 brown gold,93 gold,107 refSeqComposite,1752 xenoRefGene,322 browser chainHg38,978 chainMm10,978 chainNetHg38,981 chainNetMm10,981 chainNetTarSyr2,981 chainTarSyr2,978 cpgIslandExt,522 cpgIslandExtUnmasked,525 cpgIslandSuper,522 ensGene,67 mrna,172 mrna,296 mrna,313 nestedRepeats,243 netHg38,978 netMm10,978 netTarSyr2,978 refSeqComposite,1125 refSeqComposite,1187 refSeqComposite,1314 refSeqComposite,1451 transMapEnsemblV5,37 transMapEnsemblV5,165 transMapEnsemblV5,533 transMapEstV5,35 transMapEstV5,134 transMapEstV5,502 transMapRefSeqV5,35 transMapRefSeqV5,134 transMapRefSeqV5,502 transMapRnaV5,35 transMapRnaV5,134 transMapRnaV5,502 transMapV5,34 transMapV5,240 transMapV5,608 ucscToINSDC,19 ucscToRefSeq,14 uniprot,1544 uniprot,1721 xenoMrna,246 xenoMrna,370 xenoMrna,387 browsing uniprot,1662 build refSeqComposite,300 uniprot,1552 builds transMapEnsemblV5,54 built augustusGene,51 augustusGene,67 burge genscan,22 genscan,146 genscan,166 genscan,173 genscan,180 genscan,207 but HLTOGAannotvHg38v1,194 HLTOGAannotvHg38v1,249 chainHg38,549 chainMm10,549 chainNetHg38,552 chainNetMm10,552 chainNetTarSyr2,552 chainTarSyr2,549 netHg38,549 netMm10,549 netTarSyr2,549 refSeqComposite,427 refSeqComposite,899 refSeqComposite,1032 refSeqComposite,1452 rmsk,311 uniprot,638 uniprot,1047 button chainHg38,347 chainMm10,347 chainNetHg38,350 chainNetMm10,350 chainNetTarSyr2,350 chainTarSyr2,347 netHg38,347 netMm10,347 netTarSyr2,347 by HLTOGAannotvHg38v1,319 augustusGene,147 augustusGene,266 augustusGene,282 chainHg38,110 chainHg38,126 chainHg38,317 chainHg38,380 chainHg38,417 chainHg38,435 chainHg38,815 chainHg38,927 chainHg38,946 chainHg38,966 chainHg38,990 chainHg38,1011 chainMm10,110 chainMm10,126 chainMm10,317 chainMm10,380 chainMm10,417 chainMm10,435 chainMm10,815 chainMm10,927 chainMm10,946 chainMm10,966 chainMm10,990 chainMm10,1011 chainNetHg38,113 chainNetHg38,129 chainNetHg38,320 chainNetHg38,383 chainNetHg38,420 chainNetHg38,438 chainNetHg38,818 chainNetHg38,930 chainNetHg38,949 chainNetHg38,969 chainNetHg38,993 chainNetHg38,1014 chainNetMm10,113 chainNetMm10,129 chainNetMm10,320 chainNetMm10,383 chainNetMm10,420 chainNetMm10,438 chainNetMm10,818 chainNetMm10,930 chainNetMm10,949 chainNetMm10,969 chainNetMm10,993 chainNetMm10,1014 chainNetTarSyr2,113 chainNetTarSyr2,129 chainNetTarSyr2,320 chainNetTarSyr2,383 chainNetTarSyr2,420 chainNetTarSyr2,438 chainNetTarSyr2,818 chainNetTarSyr2,930 chainNetTarSyr2,949 chainNetTarSyr2,969 chainNetTarSyr2,993 chainNetTarSyr2,1014 chainTarSyr2,110 chainTarSyr2,126 chainTarSyr2,317 chainTarSyr2,380 chainTarSyr2,417 chainTarSyr2,435 chainTarSyr2,815 chainTarSyr2,927 chainTarSyr2,946 chainTarSyr2,966 chainTarSyr2,990 chainTarSyr2,1011 cpgIslandExt,49 cpgIslandExt,194 cpgIslandExt,229 cpgIslandExt,406 cpgIslandExt,596 cpgIslandExtUnmasked,52 cpgIslandExtUnmasked,197 cpgIslandExtUnmasked,232 cpgIslandExtUnmasked,409 cpgIslandExtUnmasked,599 cpgIslandSuper,49 cpgIslandSuper,194 cpgIslandSuper,229 cpgIslandSuper,406 cpgIslandSuper,596 ensGene,15 gap,94 gc5BaseBw,81 genscan,20 genscan,88 genscan,121 gold,86 microsat,110 mrna,214 mrna,460 nestedRepeats,8 nestedRepeats,91 nestedRepeats,129 netHg38,110 netHg38,126 netHg38,317 netHg38,380 netHg38,417 netHg38,435 netHg38,815 netHg38,927 netHg38,946 netHg38,966 netHg38,990 netHg38,1011 netMm10,110 netMm10,126 netMm10,317 netMm10,380 netMm10,417 netMm10,435 netMm10,815 netMm10,927 netMm10,946 netMm10,966 netMm10,990 netMm10,1011 netTarSyr2,110 netTarSyr2,126 netTarSyr2,317 netTarSyr2,380 netTarSyr2,417 netTarSyr2,435 netTarSyr2,815 netTarSyr2,927 netTarSyr2,946 netTarSyr2,966 netTarSyr2,990 netTarSyr2,1011 refSeqComposite,39 refSeqComposite,50 refSeqComposite,70 refSeqComposite,207 refSeqComposite,372 refSeqComposite,385 refSeqComposite,446 refSeqComposite,559 refSeqComposite,628 refSeqComposite,641 refSeqComposite,645 refSeqComposite,689 refSeqComposite,765 refSeqComposite,770 refSeqComposite,847 refSeqComposite,865 refSeqComposite,1204 refSeqComposite,1721 refSeqComposite,1726 rmsk,4 rmsk,14 rmsk,50 simpleRepeat,6 simpleRepeat,22 simpleRepeat,70 transMapEnsemblV5,23 transMapEnsemblV5,229 transMapEnsemblV5,398 transMapEnsemblV5,681 transMapEnsemblV5,699 transMapEnsemblV5,705 transMapEnsemblV5,743 transMapEstV5,21 transMapEstV5,198 transMapEstV5,367 transMapEstV5,650 transMapEstV5,668 transMapEstV5,674 transMapEstV5,712 transMapRefSeqV5,21 transMapRefSeqV5,198 transMapRefSeqV5,367 transMapRefSeqV5,650 transMapRefSeqV5,668 transMapRefSeqV5,674 transMapRefSeqV5,712 transMapRnaV5,21 transMapRnaV5,198 transMapRnaV5,367 transMapRnaV5,650 transMapRnaV5,668 transMapRnaV5,674 transMapRnaV5,712 transMapV5,20 transMapV5,304 transMapV5,473 transMapV5,756 transMapV5,774 transMapV5,780 transMapV5,818 ucscToINSDC,50 ucscToRefSeq,44 uniprot,39 uniprot,49 uniprot,224 uniprot,713 uniprot,720 uniprot,818 uniprot,987 uniprot,995 uniprot,1015 uniprot,1028 uniprot,1045 uniprot,1538 uniprot,1764 uniprot,1943 windowmaskerSdust,6 windowmaskerSdust,20 xenoMrna,288 xenoMrna,534 xenoRefGene,102 xenoRefGene,107 xenoRefGene,171 xenoRefGene,189 xenoRefGene,195 xenoRefGene,292 xenoRefGene,297 c HLTOGAannotvHg38v1,337 cpgIslandExt,44 cpgIslandExt,389 cpgIslandExtUnmasked,47 cpgIslandExtUnmasked,392 cpgIslandSuper,44 cpgIslandSuper,389 gc5BaseBw,23 genscan,181 genscan,208 refSeqComposite,917 refSeqComposite,958 refSeqComposite,985 refSeqComposite,1044 refSeqComposite,1071 refSeqComposite,1083 transMapEnsemblV5,728 transMapEnsemblV5,734 transMapEstV5,697 transMapEstV5,703 transMapRefSeqV5,697 transMapRefSeqV5,703 transMapRnaV5,697 transMapRnaV5,703 transMapV5,803 transMapV5,809 windowmaskerSdust,30 c-114100-125-31 chainMm10,677 chainNetMm10,680 netMm10,677 c-17598-186-24 chainNetTarSyr2,680 chainTarSyr2,677 netTarSyr2,677 c-17893-188-40 chainHg38,677 chainNetHg38,680 netHg38,677 caenorhabditis augustusGene,212 calculated cpgIslandExt,369 cpgIslandExtUnmasked,372 cpgIslandSuper,369 calculation cpgIslandExt,399 cpgIslandExtUnmasked,402 cpgIslandSuper,399 california chainHg38,962 chainHg38,1008 chainMm10,962 chainMm10,1008 chainNetHg38,965 chainNetHg38,1011 chainNetMm10,965 chainNetMm10,1011 chainNetTarSyr2,965 chainNetTarSyr2,1011 chainTarSyr2,962 chainTarSyr2,1008 netHg38,962 netHg38,1008 netMm10,962 netMm10,1008 netTarSyr2,962 netTarSyr2,1008 cameron ensGene,174 can augustusGene,98 chainHg38,91 chainHg38,107 chainMm10,91 chainMm10,107 chainNetHg38,94 chainNetHg38,110 chainNetMm10,94 chainNetMm10,110 chainNetTarSyr2,94 chainNetTarSyr2,110 chainTarSyr2,91 chainTarSyr2,107 cpgIslandExt,512 cpgIslandExt,530 cpgIslandExt,560 cpgIslandExt,571 cpgIslandExtUnmasked,515 cpgIslandExtUnmasked,533 cpgIslandExtUnmasked,563 cpgIslandExtUnmasked,574 cpgIslandSuper,512 cpgIslandSuper,530 cpgIslandSuper,560 cpgIslandSuper,571 ensGene,60 ensGene,103 ensGene,137 mrna,67 mrna,198 netHg38,91 netHg38,107 netMm10,91 netMm10,107 netTarSyr2,91 netTarSyr2,107 refSeqComposite,287 refSeqComposite,728 refSeqComposite,1106 refSeqComposite,1194 refSeqComposite,1298 refSeqComposite,1305 refSeqComposite,1320 refSeqComposite,1353 refSeqComposite,1393 refSeqComposite,1453 refSeqComposite,1461 refSeqComposite,1484 refSeqComposite,1504 refSeqComposite,1512 refSeqComposite,1565 refSeqComposite,1585 refSeqComposite,1608 refSeqComposite,1678 refSeqComposite,1703 rmsk,116 simpleRepeat,35 transMapEnsemblV5,526 transMapEnsemblV5,555 transMapEnsemblV5,610 transMapEnsemblV5,618 transMapEnsemblV5,641 transMapEnsemblV5,647 transMapEstV5,495 transMapEstV5,524 transMapEstV5,579 transMapEstV5,587 transMapEstV5,610 transMapEstV5,616 transMapRefSeqV5,495 transMapRefSeqV5,524 transMapRefSeqV5,579 transMapRefSeqV5,587 transMapRefSeqV5,610 transMapRefSeqV5,616 transMapRnaV5,495 transMapRnaV5,524 transMapRnaV5,579 transMapRnaV5,587 transMapRnaV5,610 transMapRnaV5,616 transMapV5,601 transMapV5,630 transMapV5,685 transMapV5,693 transMapV5,716 transMapV5,722 uniprot,180 uniprot,656 uniprot,1064 uniprot,1093 uniprot,1104 uniprot,1326 uniprot,1555 uniprot,1693 uniprot,1714 uniprot,1739 uniprot,1749 uniprot,1758 uniprot,1769 uniprot,1792 uniprot,1798 uniprot,1881 xenoMrna,141 xenoMrna,272 xenoRefGene,87 cannot uniprot,1269 cases chainHg38,193 chainHg38,404 chainMm10,193 chainMm10,404 chainNetHg38,196 chainNetHg38,407 chainNetMm10,196 chainNetMm10,407 chainNetTarSyr2,196 chainNetTarSyr2,407 chainTarSyr2,193 chainTarSyr2,404 netHg38,193 netHg38,404 netMm10,193 netMm10,404 netTarSyr2,193 netTarSyr2,404 uniprot,757 uniprot,1183 uniprot,1452 cat uniprot,1936 categorized chainHg38,505 chainMm10,505 chainNetHg38,508 chainNetMm10,508 chainNetTarSyr2,508 chainTarSyr2,505 netHg38,505 netMm10,505 netTarSyr2,505 cauldron chainHg38,1060 chainMm10,1060 chainNetHg38,1063 chainNetMm10,1063 chainNetTarSyr2,1063 chainTarSyr2,1060 netHg38,1060 netMm10,1060 netTarSyr2,1060 cause chainHg38,487 chainMm10,487 chainNetHg38,490 chainNetMm10,490 chainNetTarSyr2,490 chainTarSyr2,487 netHg38,487 netMm10,487 netTarSyr2,487 caused chainHg38,109 chainMm10,109 chainNetHg38,112 chainNetMm10,112 chainNetTarSyr2,112 chainTarSyr2,109 netHg38,109 netMm10,109 netTarSyr2,109 cavanaugh mrna,466 xenoMrna,540 cb transMapEnsemblV5,794 transMapEstV5,763 transMapRefSeqV5,763 transMapRnaV5,763 transMapV5,869 cdna augustusGene,299 refSeqComposite,267 refSeqComposite,363 transMapEnsemblV5,391 transMapEnsemblV5,687 transMapEnsemblV5,770 transMapEstV5,360 transMapEstV5,656 transMapEstV5,739 transMapRefSeqV5,360 transMapRefSeqV5,656 transMapRefSeqV5,739 transMapRnaV5,360 transMapRnaV5,656 transMapRnaV5,739 transMapV5,15 transMapV5,466 transMapV5,762 transMapV5,845 cdnas transMapEnsemblV5,125 transMapEstV5,94 transMapRefSeqV5,94 transMapRnaV5,94 transMapV5,200 cds HLTOGAannotvHg38v1,148 HLTOGAannotvHg38v1,170 HLTOGAannotvHg38v1,182 HLTOGAannotvHg38v1,203 HLTOGAannotvHg38v1,217 HLTOGAannotvHg38v1,229 HLTOGAannotvHg38v1,248 cell uniprot,563 cerevisiae augustusGene,222 certain nestedRepeats,294 rmsk,301 cesar HLTOGAannotvHg38v1,102 cg cpgIslandExt,243 cpgIslandExt,281 cpgIslandExt,339 cpgIslandExtUnmasked,246 cpgIslandExtUnmasked,284 cpgIslandExtUnmasked,342 cpgIslandSuper,243 cpgIslandSuper,281 cpgIslandSuper,339 chain chainHg38,2 chainHg38,27 chainHg38,57 chainHg38,60 chainHg38,120 chainHg38,273 chainHg38,315 chainHg38,410 chainHg38,465 chainHg38,569 chainHg38,775 chainHg38,818 chainHg38,829 chainHg38,837 chainHg38,842 chainHg38,865 chainHg38,874 chainMm10,2 chainMm10,27 chainMm10,57 chainMm10,60 chainMm10,120 chainMm10,273 chainMm10,315 chainMm10,410 chainMm10,465 chainMm10,569 chainMm10,775 chainMm10,818 chainMm10,829 chainMm10,837 chainMm10,842 chainMm10,865 chainMm10,874 chainNetHg38,2 chainNetHg38,9 chainNetHg38,30 chainNetHg38,60 chainNetHg38,63 chainNetHg38,123 chainNetHg38,276 chainNetHg38,318 chainNetHg38,413 chainNetHg38,468 chainNetHg38,572 chainNetHg38,778 chainNetHg38,821 chainNetHg38,832 chainNetHg38,840 chainNetHg38,845 chainNetHg38,868 chainNetHg38,877 chainNetHg38Viewchain,1 chainNetHg38Viewchain,7 chainNetHg38Viewnet,7 chainNetMm10,2 chainNetMm10,9 chainNetMm10,30 chainNetMm10,60 chainNetMm10,63 chainNetMm10,123 chainNetMm10,276 chainNetMm10,318 chainNetMm10,413 chainNetMm10,468 chainNetMm10,572 chainNetMm10,778 chainNetMm10,821 chainNetMm10,832 chainNetMm10,840 chainNetMm10,845 chainNetMm10,868 chainNetMm10,877 chainNetMm10Viewchain,1 chainNetMm10Viewchain,7 chainNetMm10Viewnet,7 chainNetTarSyr2,2 chainNetTarSyr2,9 chainNetTarSyr2,30 chainNetTarSyr2,60 chainNetTarSyr2,63 chainNetTarSyr2,123 chainNetTarSyr2,276 chainNetTarSyr2,318 chainNetTarSyr2,413 chainNetTarSyr2,468 chainNetTarSyr2,572 chainNetTarSyr2,778 chainNetTarSyr2,821 chainNetTarSyr2,832 chainNetTarSyr2,840 chainNetTarSyr2,845 chainNetTarSyr2,868 chainNetTarSyr2,877 chainNetTarSyr2Viewchain,1 chainNetTarSyr2Viewchain,7 chainNetTarSyr2Viewnet,7 chainTarSyr2,2 chainTarSyr2,27 chainTarSyr2,57 chainTarSyr2,60 chainTarSyr2,120 chainTarSyr2,273 chainTarSyr2,315 chainTarSyr2,410 chainTarSyr2,465 chainTarSyr2,569 chainTarSyr2,775 chainTarSyr2,818 chainTarSyr2,829 chainTarSyr2,837 chainTarSyr2,842 chainTarSyr2,865 chainTarSyr2,874 netHg38,27 netHg38,57 netHg38,60 netHg38,120 netHg38,273 netHg38,315 netHg38,410 netHg38,465 netHg38,569 netHg38,775 netHg38,818 netHg38,829 netHg38,837 netHg38,842 netHg38,865 netHg38,874 netMm10,27 netMm10,57 netMm10,60 netMm10,120 netMm10,273 netMm10,315 netMm10,410 netMm10,465 netMm10,569 netMm10,775 netMm10,818 netMm10,829 netMm10,837 netMm10,842 netMm10,865 netMm10,874 netTarSyr2,27 netTarSyr2,57 netTarSyr2,60 netTarSyr2,120 netTarSyr2,273 netTarSyr2,315 netTarSyr2,410 netTarSyr2,465 netTarSyr2,569 netTarSyr2,775 netTarSyr2,818 netTarSyr2,829 netTarSyr2,837 netTarSyr2,842 netTarSyr2,865 netTarSyr2,874 transMapV5,138 uniprot,290 chained chainHg38,8 chainMm10,8 chainTarSyr2,8 chainnet chainHg38,792 chainHg38,997 chainMm10,792 chainMm10,997 chainNetHg38,795 chainNetHg38,1000 chainNetMm10,795 chainNetMm10,1000 chainNetTarSyr2,795 chainNetTarSyr2,1000 chainTarSyr2,792 chainTarSyr2,997 netHg38,792 netHg38,997 netMm10,792 netMm10,997 netTarSyr2,792 netTarSyr2,997 chains chainHg38,196 chainHg38,208 chainHg38,219 chainHg38,320 chainHg38,359 chainHg38,392 chainHg38,397 chainHg38,419 chainHg38,431 chainHg38,438 chainHg38,495 chainHg38,665 chainHg38,680 chainHg38,694 chainHg38,763 chainHg38,784 chainHg38,799 chainHg38,859 chainHg38,890 chainHg38,985 chainMm10,196 chainMm10,208 chainMm10,219 chainMm10,320 chainMm10,359 chainMm10,392 chainMm10,397 chainMm10,419 chainMm10,431 chainMm10,438 chainMm10,495 chainMm10,665 chainMm10,680 chainMm10,694 chainMm10,763 chainMm10,784 chainMm10,799 chainMm10,859 chainMm10,890 chainMm10,985 chainNetHg38,199 chainNetHg38,211 chainNetHg38,222 chainNetHg38,323 chainNetHg38,362 chainNetHg38,395 chainNetHg38,400 chainNetHg38,422 chainNetHg38,434 chainNetHg38,441 chainNetHg38,498 chainNetHg38,668 chainNetHg38,683 chainNetHg38,697 chainNetHg38,766 chainNetHg38,787 chainNetHg38,802 chainNetHg38,862 chainNetHg38,893 chainNetHg38,988 chainNetMm10,199 chainNetMm10,211 chainNetMm10,222 chainNetMm10,323 chainNetMm10,362 chainNetMm10,395 chainNetMm10,400 chainNetMm10,422 chainNetMm10,434 chainNetMm10,441 chainNetMm10,498 chainNetMm10,668 chainNetMm10,683 chainNetMm10,697 chainNetMm10,766 chainNetMm10,787 chainNetMm10,802 chainNetMm10,862 chainNetMm10,893 chainNetMm10,988 chainNetTarSyr2,199 chainNetTarSyr2,211 chainNetTarSyr2,222 chainNetTarSyr2,323 chainNetTarSyr2,362 chainNetTarSyr2,395 chainNetTarSyr2,400 chainNetTarSyr2,422 chainNetTarSyr2,434 chainNetTarSyr2,441 chainNetTarSyr2,498 chainNetTarSyr2,668 chainNetTarSyr2,683 chainNetTarSyr2,697 chainNetTarSyr2,766 chainNetTarSyr2,787 chainNetTarSyr2,802 chainNetTarSyr2,862 chainNetTarSyr2,893 chainNetTarSyr2,988 chainTarSyr2,196 chainTarSyr2,208 chainTarSyr2,219 chainTarSyr2,320 chainTarSyr2,359 chainTarSyr2,392 chainTarSyr2,397 chainTarSyr2,419 chainTarSyr2,431 chainTarSyr2,438 chainTarSyr2,495 chainTarSyr2,665 chainTarSyr2,680 chainTarSyr2,694 chainTarSyr2,763 chainTarSyr2,784 chainTarSyr2,799 chainTarSyr2,859 chainTarSyr2,890 chainTarSyr2,985 netHg38,196 netHg38,208 netHg38,219 netHg38,320 netHg38,359 netHg38,392 netHg38,397 netHg38,419 netHg38,431 netHg38,438 netHg38,495 netHg38,665 netHg38,680 netHg38,694 netHg38,763 netHg38,784 netHg38,799 netHg38,859 netHg38,890 netHg38,985 netMm10,196 netMm10,208 netMm10,219 netMm10,320 netMm10,359 netMm10,392 netMm10,397 netMm10,419 netMm10,431 netMm10,438 netMm10,495 netMm10,665 netMm10,680 netMm10,694 netMm10,763 netMm10,784 netMm10,799 netMm10,859 netMm10,890 netMm10,985 netTarSyr2,196 netTarSyr2,208 netTarSyr2,219 netTarSyr2,320 netTarSyr2,359 netTarSyr2,392 netTarSyr2,397 netTarSyr2,419 netTarSyr2,431 netTarSyr2,438 netTarSyr2,495 netTarSyr2,665 netTarSyr2,680 netTarSyr2,694 netTarSyr2,763 netTarSyr2,784 netTarSyr2,799 netTarSyr2,859 netTarSyr2,890 netTarSyr2,985 transMapEnsemblV5,80 transMapEnsemblV5,198 transMapEnsemblV5,212 transMapEnsemblV5,258 transMapEnsemblV5,283 transMapEnsemblV5,331 transMapEnsemblV5,513 transMapEstV5,49 transMapEstV5,167 transMapEstV5,181 transMapEstV5,227 transMapEstV5,252 transMapEstV5,300 transMapEstV5,482 transMapRefSeqV5,49 transMapRefSeqV5,167 transMapRefSeqV5,181 transMapRefSeqV5,227 transMapRefSeqV5,252 transMapRefSeqV5,300 transMapRefSeqV5,482 transMapRnaV5,49 transMapRnaV5,167 transMapRnaV5,181 transMapRnaV5,227 transMapRnaV5,252 transMapRnaV5,300 transMapRnaV5,482 transMapV5,50 transMapV5,87 transMapV5,273 transMapV5,287 transMapV5,333 transMapV5,358 transMapV5,406 transMapV5,588 unipChain,1 unipChain,7 uniprot,288 change cpgIslandExt,210 cpgIslandExtUnmasked,213 cpgIslandSuper,210 mrna,71 refSeqComposite,909 refSeqComposite,923 xenoMrna,145 changed rmsk,285 uniprot,1382 characteristic mrna,276 xenoMrna,350 check chainHg38,342 chainMm10,342 chainNetHg38,345 chainNetMm10,345 chainNetTarSyr2,345 chainTarSyr2,342 netHg38,342 netMm10,342 netTarSyr2,342 check-box refSeqComposite,733 checkbox uniprot,231 chen ensGene,176 chiaromonte chainHg38,1030 chainMm10,1030 chainNetHg38,1033 chainNetMm10,1033 chainNetTarSyr2,1033 chainTarSyr2,1030 netHg38,1030 netMm10,1030 netTarSyr2,1030 chicken HLTOGAannotvHg38v1,57 augustusGene,204 augustusGene,262 chmod uniprot,1921 choose augustusGene,171 cpgIslandExt,581 cpgIslandExtUnmasked,584 cpgIslandSuper,581 mrna,232 mrna,271 uniprot,657 xenoMrna,306 xenoMrna,345 chosen mrna,294 refSeqComposite,538 xenoMrna,368 chr16 refSeqComposite,1558 chr4 chainHg38,374 chainMm10,374 chainNetHg38,377 chainNetMm10,377 chainNetTarSyr2,377 chainTarSyr2,374 netHg38,374 netMm10,374 netTarSyr2,374 chr6 transMapEnsemblV5,670 transMapEstV5,639 transMapRefSeqV5,639 transMapRnaV5,639 transMapV5,745 uniprot,1820 chris genscan,21 genscan,172 uniprot,1954 chrom refSeqComposite,1557 transMapEnsemblV5,669 transMapEstV5,638 transMapRefSeqV5,638 transMapRnaV5,638 transMapV5,744 uniprot,1819 chromosome chainHg38,249 chainHg38,329 chainHg38,354 chainHg38,362 chainHg38,372 chainHg38,381 chainHg38,528 chainHg38,543 chainHg38,559 chainHg38,628 chainHg38,634 chainMm10,249 chainMm10,329 chainMm10,354 chainMm10,362 chainMm10,372 chainMm10,381 chainMm10,528 chainMm10,543 chainMm10,559 chainMm10,628 chainMm10,634 chainNetHg38,252 chainNetHg38,332 chainNetHg38,357 chainNetHg38,365 chainNetHg38,375 chainNetHg38,384 chainNetHg38,531 chainNetHg38,546 chainNetHg38,562 chainNetHg38,631 chainNetHg38,637 chainNetMm10,252 chainNetMm10,332 chainNetMm10,357 chainNetMm10,365 chainNetMm10,375 chainNetMm10,384 chainNetMm10,531 chainNetMm10,546 chainNetMm10,562 chainNetMm10,631 chainNetMm10,637 chainNetTarSyr2,252 chainNetTarSyr2,332 chainNetTarSyr2,357 chainNetTarSyr2,365 chainNetTarSyr2,375 chainNetTarSyr2,384 chainNetTarSyr2,531 chainNetTarSyr2,546 chainNetTarSyr2,562 chainNetTarSyr2,631 chainNetTarSyr2,637 chainTarSyr2,249 chainTarSyr2,329 chainTarSyr2,354 chainTarSyr2,362 chainTarSyr2,372 chainTarSyr2,381 chainTarSyr2,528 chainTarSyr2,543 chainTarSyr2,559 chainTarSyr2,628 chainTarSyr2,634 cytoBandIdeo,1 netHg38,249 netHg38,329 netHg38,354 netHg38,362 netHg38,372 netHg38,381 netHg38,528 netHg38,543 netHg38,559 netHg38,628 netHg38,634 netMm10,249 netMm10,329 netMm10,354 netMm10,362 netMm10,372 netMm10,381 netMm10,528 netMm10,543 netMm10,559 netMm10,628 netMm10,634 netTarSyr2,249 netTarSyr2,329 netTarSyr2,354 netTarSyr2,362 netTarSyr2,372 netTarSyr2,381 netTarSyr2,528 netTarSyr2,543 netTarSyr2,559 netTarSyr2,628 netTarSyr2,634 ucscToINSDC,20 ucscToRefSeq,15 uniprot,1416 chromosome-based chainHg38,322 chainMm10,322 chainNetHg38,325 chainNetMm10,325 chainNetTarSyr2,325 chainTarSyr2,322 netHg38,322 netMm10,322 netTarSyr2,322 circle rmsk,202 cited cpgIslandExt,374 cpgIslandExtUnmasked,377 cpgIslandSuper,374 cl transMapEnsemblV5,726 transMapEstV5,695 transMapRefSeqV5,695 transMapRnaV5,695 transMapV5,801 clark ensGene,178 mrna,468 xenoMrna,542 class rmsk,199 rmsk,253 classes rmsk,150 classification HLTOGAannotvHg38v1,140 HLTOGAannotvHg38v1,304 rmsk,266 rmsk,282 classify HLTOGAannotvHg38v1,256 classifying HLTOGAannotvHg38v1,35 clawson gc5BaseBw,83 ucscToINSDC,52 ucscToRefSeq,46 cleaved uniprot,249 click chainHg38,455 chainHg38,469 chainMm10,455 chainMm10,469 chainNetHg38,458 chainNetHg38,472 chainNetMm10,458 chainNetMm10,472 chainNetTarSyr2,458 chainNetTarSyr2,472 chainTarSyr2,455 chainTarSyr2,469 gc5BaseBw,56 netHg38,455 netHg38,469 netMm10,455 netMm10,469 netTarSyr2,455 netTarSyr2,469 refSeqComposite,751 refSeqComposite,773 transMapEnsemblV5,136 transMapEnsemblV5,150 transMapEstV5,105 transMapEstV5,119 transMapRefSeqV5,105 transMapRefSeqV5,119 transMapRnaV5,105 transMapRnaV5,119 transMapV5,211 transMapV5,225 uniprot,229 uniprot,481 uniprot,1673 xenoRefGene,110 xenoRefGene,214 clicking HLTOGAannotvHg38v1,294 uniprot,1633 clinical refSeqComposite,585 clipped nestedRepeats,224 closer transMapEnsemblV5,68 transMapEstV5,37 transMapRefSeqV5,37 transMapRnaV5,37 transMapV5,36 closest augustusGene,241 clusters refSeqComposite,412 cm refSeqComposite,1763 xenoRefGene,333 code refSeqComposite,1518 transMapEnsemblV5,624 transMapEnsemblV5,638 transMapEstV5,593 transMapEstV5,607 transMapRefSeqV5,593 transMapRefSeqV5,607 transMapRnaV5,593 transMapRnaV5,607 transMapV5,699 transMapV5,713 uniprot,1546 uniprot,1775 uniprot,1789 windowmaskerSdust,34 coding HLTOGAannotvHg38v1,113 HLTOGAannotvHg38v1,149 refSeqComposite,1084 simpleRepeat,38 uniprot,1102 uniprot,1133 xenoRefGene,212 codon genscan,100 genscan,122 mrna,332 mrna,357 refSeqComposite,720 refSeqComposite,814 refSeqComposite,821 refSeqComposite,836 refSeqComposite,866 transMapEnsemblV5,114 transMapEstV5,83 transMapRefSeqV5,83 transMapRnaV5,83 transMapV5,189 xenoMrna,406 xenoMrna,431 xenoRefGene,138 xenoRefGene,145 xenoRefGene,160 xenoRefGene,190 codons genscan,89 genscan,93 refSeqComposite,841 refSeqComposite,848 xenoRefGene,165 xenoRefGene,172 cognate transMapEnsemblV5,180 transMapEstV5,149 transMapRefSeqV5,149 transMapRnaV5,149 transMapV5,255 coiled-coil uniprot,367 collaboration ucscToINSDC,9 ucscToINSDC,31 collaborator refSeqComposite,647 collaborators refSeqComposite,691 collapsed nestedRepeats,173 collection refSeqComposite,32 xenoRefGene,33 color chainHg38,350 chainMm10,350 chainNetHg38,353 chainNetMm10,353 chainNetTarSyr2,353 chainTarSyr2,350 genscan,86 genscan,96 mrna,77 mrna,273 netHg38,350 netMm10,350 netTarSyr2,350 refSeqComposite,607 refSeqComposite,630 refSeqComposite,845 rmsk,207 xenoMrna,151 xenoMrna,347 xenoRefGene,58 xenoRefGene,169 color-coded HLTOGAannotvHg38v1,139 coloration gold,94 colored chainHg38,325 chainMm10,325 chainNetHg38,328 chainNetMm10,328 chainNetTarSyr2,328 chainTarSyr2,325 mrna,373 netHg38,325 netMm10,325 netTarSyr2,325 transMapEnsemblV5,146 transMapEstV5,115 transMapRefSeqV5,115 transMapRnaV5,115 transMapV5,221 uniprot,160 uniprot,176 xenoMrna,447 coloring chainHg38,341 chainMm10,341 chainNetHg38,344 chainNetMm10,344 chainNetTarSyr2,344 chainTarSyr2,341 genscan,116 mrna,333 mrna,360 netHg38,341 netMm10,341 netTarSyr2,341 refSeqComposite,815 refSeqComposite,822 refSeqComposite,860 transMapEnsemblV5,115 transMapEstV5,84 transMapRefSeqV5,84 transMapRnaV5,84 transMapV5,190 xenoMrna,407 xenoMrna,434 xenoRefGene,139 xenoRefGene,146 xenoRefGene,184 colors refSeqComposite,837 xenoRefGene,81 xenoRefGene,161 column nestedRepeats,107 refSeqComposite,1428 refSeqComposite,1439 columns transMapEnsemblV5,553 transMapEstV5,522 transMapRefSeqV5,522 transMapRnaV5,522 transMapV5,628 combination mrna,235 xenoMrna,309 combinations xenoMrna,120 combined rmsk,232 command cpgIslandExt,409 cpgIslandExt,503 cpgIslandExtUnmasked,412 cpgIslandExtUnmasked,506 cpgIslandSuper,409 cpgIslandSuper,503 refSeqComposite,1549 refSeqComposite,1613 transMapEnsemblV5,256 transMapEstV5,225 transMapRefSeqV5,225 transMapRnaV5,225 transMapV5,331 uniprot,1871 uniprot,1875 commands uniprot,1902 comment uniprot,260 uniprot,282 uniprot,531 uniprot,615 common cpgIslandExt,30 cpgIslandExtUnmasked,33 cpgIslandSuper,30 comparative chainHg38,10 chainMm10,10 chainNetHg38,13 chainNetHg38Viewchain,11 chainNetHg38Viewnet,11 chainNetMm10,13 chainNetMm10Viewchain,11 chainNetMm10Viewnet,11 chainNetTarSyr2,13 chainNetTarSyr2Viewchain,11 chainNetTarSyr2Viewnet,11 chainTarSyr2,10 netHg38,10 netMm10,10 netTarSyr2,10 transMapEnsemblV5,744 transMapEnsemblV5,799 transMapEstV5,713 transMapEstV5,768 transMapRefSeqV5,713 transMapRefSeqV5,768 transMapRnaV5,713 transMapRnaV5,768 transMapV5,819 transMapV5,874 compare mrna,342 refSeqComposite,831 transMapEnsemblV5,124 transMapEstV5,93 transMapRefSeqV5,93 transMapRnaV5,93 transMapV5,199 xenoMrna,416 xenoRefGene,155 compared transMapV5,154 comparison genscan,109 uniprot,1260 compiled refSeqComposite,1514 transMapEnsemblV5,620 transMapEstV5,589 transMapRefSeqV5,589 transMapRnaV5,589 transMapV5,695 uniprot,1771 complete genscan,213 completely refSeqComposite,813 uniprot,1464 xenoRefGene,137 complex chainHg38,164 chainMm10,164 chainNetHg38,167 chainNetMm10,167 chainNetTarSyr2,167 chainTarSyr2,164 netHg38,164 netMm10,164 netTarSyr2,164 complexity nestedRepeats,40 rmsk,30 rmsk,182 component gold,136 composed uniprot,1396 composite refSeqComposite,16 refSeqComposite,149 compositional genscan,41 uniprot,399 comput transMapEnsemblV5,812 transMapEstV5,781 transMapRefSeqV5,781 transMapRnaV5,781 transMapV5,887 computational genscan,196 uniprot,51 computed transMapEnsemblV5,228 transMapEstV5,197 transMapRefSeqV5,197 transMapRnaV5,197 transMapV5,303 comstock transMapEnsemblV5,725 transMapEstV5,694 transMapRefSeqV5,694 transMapRnaV5,694 transMapV5,800 concerning refSeqComposite,126 conditional augustusGene,118 configuration HLTOGAannotvHg38v1,131 chainHg38,314 chainMm10,314 chainNetHg38,317 chainNetMm10,317 chainNetTarSyr2,317 chainTarSyr2,314 gc5BaseBw,60 gc5BaseBw,69 genscan,64 genscan,84 mrna,30 nestedRepeats,114 netHg38,314 netMm10,314 netTarSyr2,314 refSeqComposite,144 rmsk,138 transMapEnsemblV5,95 transMapEstV5,64 transMapRefSeqV5,64 transMapRnaV5,64 transMapV5,170 uniprot,235 uniprot,449 uniprot,650 uniprot,1755 xenoMrna,34 xenoRefGene,46 configured gc5BaseBw,42 mrna,329 refSeqComposite,730 transMapEnsemblV5,111 transMapEstV5,80 transMapRefSeqV5,80 transMapRnaV5,80 transMapV5,186 xenoMrna,403 xenoRefGene,89 conflicts unipConflict,2 unipConflict,5 uniprot,373 connect uniprot,1677 conservation transMapEnsemblV5,232 transMapEstV5,201 transMapRefSeqV5,201 transMapRnaV5,201 transMapV5,307 consistency uniprot,402 consortium uniprot,1986 constructed cpgIslandExt,322 cpgIslandExt,495 cpgIslandExtUnmasked,325 cpgIslandExtUnmasked,498 cpgIslandSuper,322 cpgIslandSuper,495 refSeqComposite,1218 construction cpgIslandExt,311 cpgIslandExtUnmasked,314 cpgIslandSuper,311 consult mrna,166 xenoMrna,240 contact uniprot,686 uniprot,1440 contain transMapV5,14 uniprot,1163 contained chainHg38,891 chainMm10,891 chainNetHg38,894 chainNetMm10,894 chainNetTarSyr2,894 chainTarSyr2,891 netHg38,891 netMm10,891 netTarSyr2,891 refSeqComposite,1142 containing refSeqComposite,1658 transMapEnsemblV5,548 transMapEstV5,517 transMapRefSeqV5,517 transMapRnaV5,517 transMapV5,623 contains gap,118 mrna,191 refSeqComposite,152 refSeqComposite,872 transMapEnsemblV5,17 transMapEstV5,15 transMapRefSeqV5,16 transMapRnaV5,16 xenoMrna,265 xenoRefGene,142 content augustusGene,71 cpgIslandExt,263 cpgIslandExtUnmasked,266 cpgIslandSuper,263 gc5BaseBw,31 contig gold,82 contigs gap,85 gap,131 gold,74 gold,99 gold,116 controls cpgIslandExt,217 cpgIslandExtUnmasked,220 cpgIslandSuper,217 refSeqComposite,734 xenoRefGene,92 convenience uniprot,404 conventions HLTOGAannotvHg38v1,129 chainHg38,312 chainMm10,312 chainNetHg38,315 chainNetMm10,315 chainNetTarSyr2,315 chainTarSyr2,312 genscan,62 genscan,70 mrna,28 mrna,36 nestedRepeats,112 netHg38,312 netMm10,312 netTarSyr2,312 refSeqComposite,142 refSeqComposite,453 refSeqComposite,601 rmsk,136 transMapEnsemblV5,93 transMapEnsemblV5,101 transMapEstV5,62 transMapEstV5,70 transMapRefSeqV5,62 transMapRefSeqV5,70 transMapRnaV5,62 transMapRnaV5,70 transMapV5,168 transMapV5,176 uniprot,447 xenoMrna,32 xenoMrna,40 xenoRefGene,44 xenoRefGene,52 converted chainHg38,605 chainMm10,605 chainNetHg38,608 chainNetMm10,608 chainNetTarSyr2,608 chainTarSyr2,605 netHg38,605 netMm10,605 netTarSyr2,605 refSeqComposite,1174 refSeqComposite,1588 uniprot,1477 uniprot,1760 coordinates refSeqComposite,37 refSeqComposite,68 uniprot,29 uniprot,643 uniprot,1848 uniprot,1855 uniprot,1886 uniprot,1892 copies microsat,80 copy uniprot,419 correct uniprot,962 uniprot,1222 corrections refSeqComposite,121 corresponding transMapEnsemblV5,259 transMapEstV5,228 transMapRefSeqV5,228 transMapRnaV5,228 transMapV5,334 corresponds mrna,174 xenoMrna,248 could refSeqComposite,969 refSeqComposite,1545 count cpgIslandExt,334 cpgIslandExt,357 cpgIslandExtUnmasked,337 cpgIslandExtUnmasked,360 cpgIslandSuper,334 cpgIslandSuper,357 gap,132 counts gold,143 coverage uniprot,1485 covered chainHg38,814 chainMm10,814 chainNetHg38,817 chainNetMm10,817 chainNetTarSyr2,817 chainTarSyr2,814 gap,25 gold,27 netHg38,814 netMm10,814 netTarSyr2,814 cow transMapEnsemblV5,451 transMapEstV5,420 transMapRefSeqV5,420 transMapRnaV5,420 transMapV5,526 cox ensGene,180 cpg cpgIslandExt,1 cpgIslandExt,3 cpgIslandExt,15 cpgIslandExt,26 cpgIslandExt,55 cpgIslandExt,147 cpgIslandExt,176 cpgIslandExt,225 cpgIslandExt,316 cpgIslandExt,319 cpgIslandExt,333 cpgIslandExt,346 cpgIslandExt,351 cpgIslandExt,356 cpgIslandExt,367 cpgIslandExt,382 cpgIslandExt,385 cpgIslandExt,506 cpgIslandExt,608 cpgIslandExtUnmasked,2 cpgIslandExtUnmasked,3 cpgIslandExtUnmasked,18 cpgIslandExtUnmasked,29 cpgIslandExtUnmasked,58 cpgIslandExtUnmasked,150 cpgIslandExtUnmasked,179 cpgIslandExtUnmasked,228 cpgIslandExtUnmasked,319 cpgIslandExtUnmasked,322 cpgIslandExtUnmasked,336 cpgIslandExtUnmasked,349 cpgIslandExtUnmasked,354 cpgIslandExtUnmasked,359 cpgIslandExtUnmasked,370 cpgIslandExtUnmasked,385 cpgIslandExtUnmasked,388 cpgIslandExtUnmasked,509 cpgIslandExtUnmasked,611 cpgIslandSuper,1 cpgIslandSuper,3 cpgIslandSuper,15 cpgIslandSuper,26 cpgIslandSuper,55 cpgIslandSuper,147 cpgIslandSuper,176 cpgIslandSuper,225 cpgIslandSuper,316 cpgIslandSuper,319 cpgIslandSuper,333 cpgIslandSuper,346 cpgIslandSuper,351 cpgIslandSuper,356 cpgIslandSuper,367 cpgIslandSuper,382 cpgIslandSuper,385 cpgIslandSuper,506 cpgIslandSuper,608 cpg_lh cpgIslandExt,418 cpgIslandExt,558 cpgIslandExt,568 cpgIslandExt,580 cpgIslandExtUnmasked,421 cpgIslandExtUnmasked,561 cpgIslandExtUnmasked,571 cpgIslandExtUnmasked,583 cpgIslandSuper,418 cpgIslandSuper,558 cpgIslandSuper,568 cpgIslandSuper,580 cpg_lh.err cpgIslandExt,423 cpgIslandExtUnmasked,426 cpgIslandSuper,423 cpgisland.bed cpgIslandExt,489 cpgIslandExtUnmasked,492 cpgIslandSuper,489 cpgislandext cpgIslandExt,566 cpgIslandExtUnmasked,569 cpgIslandSuper,566 cpgs cpgIslandExt,115 cpgIslandExt,152 cpgIslandExtUnmasked,118 cpgIslandExtUnmasked,155 cpgIslandSuper,115 cpgIslandSuper,152 create refSeqComposite,310 windowmaskerSdust,48 created chainHg38,989 chainMm10,989 chainNetHg38,992 chainNetMm10,992 chainNetTarSyr2,992 chainTarSyr2,989 microsat,89 netHg38,989 netMm10,989 netTarSyr2,989 refSeqComposite,102 refSeqComposite,1153 rmsk,13 transMapEnsemblV5,74 transMapEstV5,43 transMapRefSeqV5,43 transMapRnaV5,43 transMapV5,42 uniprot,824 uniprot,1942 creates chainHg38,639 chainMm10,639 chainNetHg38,642 chainNetMm10,642 chainNetTarSyr2,642 chainTarSyr2,639 netHg38,639 netMm10,639 netTarSyr2,639 credits HLTOGAannotvHg38v1,314 augustusGene,247 chainHg38,915 chainMm10,915 chainNetHg38,918 chainNetMm10,918 chainNetTarSyr2,918 chainTarSyr2,915 cpgIslandExt,584 cpgIslandExtUnmasked,587 cpgIslandSuper,584 ensGene,145 gc5BaseBw,71 genscan,169 microsat,104 mrna,441 nestedRepeats,302 netHg38,915 netMm10,915 netTarSyr2,915 refSeqComposite,1711 rmsk,325 simpleRepeat,66 transMapEnsemblV5,676 transMapEstV5,645 transMapRefSeqV5,645 transMapRnaV5,645 transMapV5,751 ucscToINSDC,42 ucscToRefSeq,36 uniprot,1938 xenoMrna,515 xenoRefGene,280 criteria cpgIslandExt,261 cpgIslandExtUnmasked,264 cpgIslandSuper,261 mrna,249 mrna,267 mrna,305 mrna,323 transMapEnsemblV5,359 transMapEstV5,328 transMapRefSeqV5,328 transMapRnaV5,328 transMapV5,434 xenoMrna,323 xenoMrna,341 xenoMrna,379 xenoMrna,397 cross-species transMapEnsemblV5,26 transMapEstV5,24 transMapRefSeqV5,24 transMapRnaV5,24 transMapV5,23 cruz chainHg38,965 chainHg38,1010 chainMm10,965 chainMm10,1010 chainNetHg38,968 chainNetHg38,1013 chainNetMm10,968 chainNetMm10,1013 chainNetTarSyr2,968 chainNetTarSyr2,1013 chainTarSyr2,965 chainTarSyr2,1010 netHg38,965 netHg38,1010 netMm10,965 netMm10,1010 netTarSyr2,965 netTarSyr2,1010 cs cpgIslandExt,63 cpgIslandExt,101 cpgIslandExt,296 cpgIslandExtUnmasked,66 cpgIslandExtUnmasked,104 cpgIslandExtUnmasked,299 cpgIslandSuper,63 cpgIslandSuper,101 cpgIslandSuper,296 cuff ensGene,182 culex augustusGene,220 curated ncbiRefSeq,6 ncbiRefSeqCurated,2 ncbiRefSeqCurated,6 refSeqComposite,88 refSeqComposite,202 refSeqComposite,210 refSeqComposite,251 refSeqComposite,315 refSeqComposite,400 refSeqComposite,422 refSeqComposite,471 refSeqComposite,523 refSeqComposite,556 refSeqComposite,591 refSeqComposite,1413 refSeqComposite,1673 refSeqComposite,1725 refSeqComposite,1803 uniprot,35 uniprot,110 uniprot,142 xenoRefGene,296 xenoRefGene,373 curator rmsk,261 curr nestedRepeats,384 nestedRepeats,406 rmsk,407 rmsk,429 current mrna,109 nestedRepeats,250 uniprot,1296 uniprot,1575 uniprot,1692 uniprot,1712 xenoMrna,183 currently gold,79 refSeqComposite,475 curwen ensGene,184 cutoff refSeqComposite,942 cytoplamsic uniprot,518 cytoplasmic unipLocCytopl,1 unipLocCytopl,3 uniprot,276 uniprot,284 uniprot,569 cytosine cpgIslandExt,45 cpgIslandExtUnmasked,48 cpgIslandSuper,45 gc5BaseBw,24 d HLTOGAannotvHg38v1,341 augustusGene,293 chainHg38,1057 chainHg38,1101 chainMm10,1057 chainMm10,1101 chainNetHg38,1060 chainNetHg38,1104 chainNetMm10,1060 chainNetMm10,1104 chainNetTarSyr2,1060 chainNetTarSyr2,1104 chainTarSyr2,1057 chainTarSyr2,1101 cpgIslandExt,438 cpgIslandExtUnmasked,441 cpgIslandSuper,438 ensGene,171 genscan,192 netHg38,1057 netHg38,1101 netMm10,1057 netMm10,1101 netTarSyr2,1057 netTarSyr2,1101 transMapEnsemblV5,764 transMapEnsemblV5,798 transMapEstV5,733 transMapEstV5,767 transMapRefSeqV5,733 transMapRefSeqV5,767 transMapRnaV5,733 transMapRnaV5,767 transMapV5,839 transMapV5,873 d23-6 mrna,513 xenoMrna,587 d36-42 mrna,487 xenoMrna,561 d501-4 refSeqComposite,1821 xenoRefGene,391 d71-5 uniprot,2005 d756-63 refSeqComposite,1787 xenoRefGene,357 da mrna,465 mrna,493 xenoMrna,539 xenoMrna,567 dark refSeqComposite,625 unipAliSwissprot,10 uniprot,162 uniprot,582 uniprot,587 xenoRefGene,75 darkly mrna,50 xenoMrna,54 data HLTOGAannotvHg38v1,316 cpgIslandExt,403 cpgIslandExt,493 cpgIslandExt,504 cpgIslandExt,525 cpgIslandExtUnmasked,406 cpgIslandExtUnmasked,496 cpgIslandExtUnmasked,507 cpgIslandExtUnmasked,528 cpgIslandSuper,403 cpgIslandSuper,493 cpgIslandSuper,504 cpgIslandSuper,525 ensGene,55 ensGene,59 ensGene,70 ensGene,102 gap,97 gc5BaseBw,73 microsat,47 mrna,452 nestedRepeats,263 nestedRepeats,280 refSeqComposite,154 refSeqComposite,656 refSeqComposite,1157 refSeqComposite,1163 refSeqComposite,1290 refSeqComposite,1294 refSeqComposite,1316 refSeqComposite,1368 refSeqComposite,1653 refSeqComposite,1719 rmsk,126 rmsk,287 transMapEnsemblV5,518 transMapEnsemblV5,522 transMapEnsemblV5,536 transMapEnsemblV5,573 transMapEnsemblV5,577 transMapEnsemblV5,691 transMapEstV5,487 transMapEstV5,491 transMapEstV5,505 transMapEstV5,542 transMapEstV5,546 transMapEstV5,660 transMapRefSeqV5,487 transMapRefSeqV5,491 transMapRefSeqV5,505 transMapRefSeqV5,542 transMapRefSeqV5,546 transMapRefSeqV5,660 transMapRnaV5,487 transMapRnaV5,491 transMapRnaV5,505 transMapRnaV5,542 transMapRnaV5,546 transMapRnaV5,660 transMapV5,593 transMapV5,597 transMapV5,611 transMapV5,648 transMapV5,652 transMapV5,766 ucscToINSDC,34 ucscToINSDC,44 ucscToRefSeq,28 ucscToRefSeq,38 uniprot,32 uniprot,45 uniprot,892 uniprot,895 uniprot,1683 uniprot,1705 uniprot,1709 uniprot,1724 uniprot,1837 uniprot,1980 xenoMrna,526 xenoRefGene,36 xenoRefGene,290 database chainHg38,981 chainMm10,981 chainNetHg38,984 chainNetMm10,984 chainNetTarSyr2,984 chainTarSyr2,981 ensGene,193 mrna,485 mrna,511 nestedRepeats,345 netHg38,981 netMm10,981 netTarSyr2,981 refSeqComposite,564 refSeqComposite,1403 refSeqComposite,1785 refSeqComposite,1806 refSeqComposite,1819 rmsk,125 rmsk,368 transMapEnsemblV5,166 transMapEstV5,135 transMapRefSeqV5,135 transMapRnaV5,135 transMapV5,241 ucscToINSDC,8 ucscToINSDC,30 ucscToINSDC,41 ucscToRefSeq,25 ucscToRefSeq,35 uniprot,25 uniprot,821 uniprot,2003 uniprot,2031 xenoMrna,559 xenoMrna,585 xenoRefGene,355 xenoRefGene,376 xenoRefGene,389 databases mrna,459 refSeqComposite,279 refSeqComposite,426 transMapEnsemblV5,698 transMapEstV5,667 transMapRefSeqV5,667 transMapRnaV5,667 transMapV5,773 xenoMrna,533 dataset refSeqComposite,532 david chainHg38,975 chainMm10,975 chainNetHg38,978 chainNetMm10,978 chainNetTarSyr2,978 chainTarSyr2,975 netHg38,975 netMm10,975 netTarSyr2,975 davis transMapEnsemblV5,727 transMapEstV5,696 transMapRefSeqV5,696 transMapRnaV5,696 transMapV5,802 de augustusGene,303 transMapEnsemblV5,774 transMapEstV5,743 transMapRefSeqV5,743 transMapRnaV5,743 transMapV5,849 deamination cpgIslandExt,110 cpgIslandExtUnmasked,113 cpgIslandSuper,110 dec chainHg38,4 chainHg38,66 chainHg38,306 chainMm10,4 chainMm10,66 chainMm10,306 chainNetHg38,5 chainNetHg38,69 chainNetHg38,309 chainNetHg38Viewchain,3 chainNetHg38Viewnet,3 chainNetMm10,5 chainNetMm10,69 chainNetMm10,309 chainNetMm10Viewchain,3 chainNetMm10Viewnet,3 nestedRepeats,389 nestedRepeats,411 netHg38,4 netHg38,66 netHg38,306 netMm10,4 netMm10,66 netMm10,306 rmsk,412 rmsk,434 transMapEnsemblV5,749 transMapEnsemblV5,815 transMapEstV5,718 transMapEstV5,784 transMapRefSeqV5,718 transMapRefSeqV5,784 transMapRnaV5,718 transMapRnaV5,784 transMapV5,824 transMapV5,890 default chainHg38,318 chainMm10,318 chainNetHg38,321 chainNetMm10,321 chainNetTarSyr2,321 chainTarSyr2,318 cpgIslandExt,195 cpgIslandExtUnmasked,198 cpgIslandSuper,195 netHg38,318 netMm10,318 netTarSyr2,318 refSeqComposite,766 refSeqComposite,1040 refSeqComposite,1067 uniprot,225 xenoRefGene,103 xenoRefGene,196 defined refSeqComposite,627 uniprot,305 uniprot,1387 definition gap,40 gold,42 deletion chainHg38,147 chainHg38,1062 chainMm10,147 chainMm10,1062 chainNetHg38,150 chainNetHg38,1065 chainNetMm10,150 chainNetMm10,1065 chainNetTarSyr2,150 chainNetTarSyr2,1065 chainTarSyr2,147 chainTarSyr2,1062 mrna,382 netHg38,147 netHg38,1062 netMm10,147 netMm10,1062 netTarSyr2,147 netTarSyr2,1062 refSeqComposite,950 refSeqComposite,1046 refSeqComposite,1073 rmsk,220 xenoMrna,456 deletions chainHg38,115 chainHg38,179 chainMm10,115 chainMm10,179 chainNetHg38,118 chainNetHg38,182 chainNetMm10,118 chainNetMm10,182 chainNetTarSyr2,118 chainNetTarSyr2,182 chainTarSyr2,115 chainTarSyr2,179 netHg38,115 netHg38,179 netMm10,115 netMm10,179 netTarSyr2,115 netTarSyr2,179 delivered gap,52 gold,51 dense gold,68 mrna,42 nestedRepeats,157 nestedRepeats,168 xenoMrna,46 dependencies genscan,183 depending uniprot,442 uniprot,808 depicts gold,72 windowmaskerSdust,15 deprecated uniprot,1044 derived chainHg38,765 chainMm10,765 chainNetHg38,768 chainNetMm10,768 chainNetTarSyr2,768 chainTarSyr2,765 netHg38,765 netMm10,765 netTarSyr2,765 uniprot,830 described chainHg38,772 chainMm10,772 chainNetHg38,775 chainNetMm10,775 chainNetTarSyr2,775 chainTarSyr2,772 genscan,161 nestedRepeats,60 nestedRepeats,338 netHg38,772 netMm10,772 netTarSyr2,772 refSeqComposite,1642 rmsk,96 rmsk,361 uniprot,1524 describes augustusGene,226 gap,61 gold,60 describing refSeqComposite,255 description HLTOGAannotvHg38v1,15 augustusGene,12 chainHg38,12 chainHg38,777 chainMm10,12 chainMm10,777 chainNetHg38,15 chainNetHg38,780 chainNetMm10,15 chainNetMm10,780 chainNetTarSyr2,15 chainNetTarSyr2,780 chainTarSyr2,12 chainTarSyr2,777 cpgIslandExt,14 cpgIslandExtUnmasked,17 cpgIslandSuper,14 ensGene,9 ensGene,32 gap,7 gc5BaseBw,11 genscan,10 genscan,77 genscan,133 gold,8 microsat,10 mrna,12 mrna,58 nestedRepeats,14 netHg38,12 netHg38,777 netMm10,12 netMm10,777 netTarSyr2,12 netTarSyr2,777 refSeqComposite,11 refSeqComposite,741 rmsk,9 simpleRepeat,11 transMapEnsemblV5,14 transMapEnsemblV5,234 transMapEstV5,12 transMapEstV5,203 transMapRefSeqV5,13 transMapRefSeqV5,203 transMapRnaV5,13 transMapRnaV5,203 transMapV5,11 transMapV5,309 ucscToINSDC,13 ucscToRefSeq,8 uniprot,11 uniprot,106 windowmaskerSdust,12 xenoMrna,11 xenoMrna,132 xenoRefGene,11 xenoRefGene,99 descriptions augustusGene,91 designed refSeqComposite,1441 uniprot,1355 desired mrna,234 xenoMrna,308 destination transMapEnsemblV5,417 transMapEstV5,386 transMapRefSeqV5,386 transMapRnaV5,386 transMapV5,492 destined uniprot,244 destuniq transMapEnsemblV5,436 transMapEstV5,405 transMapRefSeqV5,405 transMapRnaV5,405 transMapV5,511 detail genscan,164 detailed augustusGene,90 chainHg38,461 chainHg38,480 chainMm10,461 chainMm10,480 chainNetHg38,464 chainNetHg38,483 chainNetMm10,464 chainNetMm10,483 chainNetTarSyr2,464 chainNetTarSyr2,483 chainTarSyr2,461 chainTarSyr2,480 nestedRepeats,70 netHg38,461 netHg38,480 netMm10,461 netMm10,480 netTarSyr2,461 netTarSyr2,480 rmsk,37 uniprot,692 details refSeqComposite,95 refSeqComposite,1126 rmsk,119 transMapEnsemblV5,236 transMapEstV5,205 transMapRefSeqV5,205 transMapRnaV5,205 transMapV5,311 uniprot,499 uniprot,771 uniprot,1157 uniprot,1584 determination transMapEnsemblV5,274 transMapEstV5,243 transMapRefSeqV5,243 transMapRnaV5,243 transMapV5,349 determine HLTOGAannotvHg38v1,107 transMapV5,91 determined windowmaskerSdust,19 determining chainHg38,485 chainMm10,485 chainNetHg38,488 chainNetMm10,488 chainNetTarSyr2,488 chainTarSyr2,485 netHg38,485 netMm10,485 netTarSyr2,485 dev cpgIslandExt,419 cpgIslandExtUnmasked,422 cpgIslandSuper,419 nestedRepeats,387 nestedRepeats,409 rmsk,410 rmsk,432 developed chainHg38,922 chainHg38,957 chainHg38,1003 chainMm10,922 chainMm10,957 chainMm10,1003 chainNetHg38,925 chainNetHg38,960 chainNetHg38,1006 chainNetMm10,925 chainNetMm10,960 chainNetMm10,1006 chainNetTarSyr2,925 chainNetTarSyr2,960 chainNetTarSyr2,1006 chainTarSyr2,922 chainTarSyr2,957 chainTarSyr2,1003 cpgIslandExt,595 cpgIslandExtUnmasked,598 cpgIslandSuper,595 netHg38,922 netHg38,957 netHg38,1003 netMm10,922 netMm10,957 netMm10,1003 netTarSyr2,922 netTarSyr2,957 netTarSyr2,1003 dfam rmsk,112 dg HLTOGAannotvHg38v1,351 di-nucleotide microsat,3 microsat,32 diagnostics refSeqComposite,586 diekhans augustusGene,288 transMapEnsemblV5,683 transMapEnsemblV5,716 transMapEnsemblV5,759 transMapEnsemblV5,791 transMapEstV5,652 transMapEstV5,685 transMapEstV5,728 transMapEstV5,760 transMapRefSeqV5,652 transMapRefSeqV5,685 transMapRefSeqV5,728 transMapRefSeqV5,760 transMapRnaV5,652 transMapRnaV5,685 transMapRnaV5,728 transMapRnaV5,760 transMapV5,758 transMapV5,791 transMapV5,834 transMapV5,866 uniprot,1540 uniprot,1957 diemand uniprot,2014 differ refSeqComposite,288 uniprot,746 uniprot,1131 difference uniprot,1251 differences ncbiRefSeqGenomicDiff,3 refSeqComposite,64 refSeqComposite,461 refSeqComposite,892 refSeqComposite,961 uniprot,374 uniprot,921 uniprot,1370 different augustusGene,39 augustusGene,85 augustusGene,96 augustusGene,144 augustusGene,155 augustusGene,179 augustusGene,193 chainHg38,560 chainMm10,560 chainNetHg38,563 chainNetMm10,563 chainNetTarSyr2,563 chainTarSyr2,560 ensGene,22 gc5BaseBw,50 genscan,54 netHg38,560 netMm10,560 netTarSyr2,560 refSeqComposite,99 refSeqComposite,134 refSeqComposite,874 rmsk,149 uniprot,634 xenoMrna,113 differing refSeqComposite,153 difficult transMapEnsemblV5,278 transMapEstV5,247 transMapRefSeqV5,247 transMapRnaV5,247 transMapV5,353 diffs ncbiRefSeqGenomicDiff,2 refSeqComposite,458 refSeqComposite,870 refSeqComposite,1200 refSeqComposite,1375 dinucleotide cpgIslandExt,240 cpgIslandExtUnmasked,243 cpgIslandSuper,240 dinucleotides cpgIslandExt,282 cpgIslandExt,340 cpgIslandExtUnmasked,285 cpgIslandExtUnmasked,343 cpgIslandSuper,282 cpgIslandSuper,340 directly cpgIslandExt,534 cpgIslandExtUnmasked,537 cpgIslandSuper,534 ensGene,111 uniprot,993 directory ensGene,86 ensGene,94 refSeqComposite,1531 refSeqComposite,1580 refSeqComposite,1600 rmsk,134 discarded chainHg38,691 chainMm10,691 chainNetHg38,694 chainNetMm10,694 chainNetTarSyr2,694 chainTarSyr2,691 netHg38,691 netMm10,691 netTarSyr2,691 refSeqComposite,1248 transMapEnsemblV5,383 transMapEstV5,352 transMapRefSeqV5,352 transMapRnaV5,352 transMapV5,458 xenoRefGene,238 discovery transMapEnsemblV5,738 transMapEstV5,707 transMapRefSeqV5,707 transMapRnaV5,707 transMapV5,813 discussion nestedRepeats,364 rmsk,387 disease uniprot,545 uniprot,616 diseases simpleRepeat,54 display HLTOGAannotvHg38v1,128 chainHg38,241 chainHg38,311 chainHg38,356 chainHg38,386 chainHg38,445 chainHg38,474 chainHg38,503 chainHg38,979 chainMm10,241 chainMm10,311 chainMm10,356 chainMm10,386 chainMm10,445 chainMm10,474 chainMm10,503 chainMm10,979 chainNetHg38,244 chainNetHg38,314 chainNetHg38,359 chainNetHg38,389 chainNetHg38,448 chainNetHg38,477 chainNetHg38,506 chainNetHg38,982 chainNetMm10,244 chainNetMm10,314 chainNetMm10,359 chainNetMm10,389 chainNetMm10,448 chainNetMm10,477 chainNetMm10,506 chainNetMm10,982 chainNetTarSyr2,244 chainNetTarSyr2,314 chainNetTarSyr2,359 chainNetTarSyr2,389 chainNetTarSyr2,448 chainNetTarSyr2,477 chainNetTarSyr2,506 chainNetTarSyr2,982 chainTarSyr2,241 chainTarSyr2,311 chainTarSyr2,356 chainTarSyr2,386 chainTarSyr2,445 chainTarSyr2,474 chainTarSyr2,503 chainTarSyr2,979 genscan,61 genscan,69 genscan,104 gold,131 mrna,27 mrna,35 mrna,43 mrna,73 mrna,100 mrna,130 mrna,275 mrna,299 mrna,315 mrna,331 mrna,383 nestedRepeats,111 netHg38,241 netHg38,311 netHg38,356 netHg38,386 netHg38,445 netHg38,474 netHg38,503 netHg38,979 netMm10,241 netMm10,311 netMm10,356 netMm10,386 netMm10,445 netMm10,474 netMm10,503 netMm10,979 netTarSyr2,241 netTarSyr2,311 netTarSyr2,356 netTarSyr2,386 netTarSyr2,445 netTarSyr2,474 netTarSyr2,503 netTarSyr2,979 refSeqComposite,141 refSeqComposite,452 refSeqComposite,600 refSeqComposite,721 refSeqComposite,779 refSeqComposite,835 refSeqComposite,1183 refSeqComposite,1447 rmsk,135 rmsk,141 rmsk,212 transMapEnsemblV5,92 transMapEnsemblV5,100 transMapEnsemblV5,113 transMapEstV5,61 transMapEstV5,69 transMapEstV5,82 transMapRefSeqV5,61 transMapRefSeqV5,69 transMapRefSeqV5,82 transMapRnaV5,61 transMapRnaV5,69 transMapRnaV5,82 transMapV5,167 transMapV5,175 transMapV5,188 uniprot,446 xenoMrna,31 xenoMrna,39 xenoMrna,47 xenoMrna,147 xenoMrna,174 xenoMrna,204 xenoMrna,349 xenoMrna,373 xenoMrna,389 xenoMrna,405 xenoMrna,457 xenoRefGene,43 xenoRefGene,51 xenoRefGene,80 xenoRefGene,116 xenoRefGene,159 displayed chainHg38,422 chainHg38,519 chainHg38,696 chainMm10,422 chainMm10,519 chainMm10,696 chainNetHg38,425 chainNetHg38,522 chainNetHg38,699 chainNetMm10,425 chainNetMm10,522 chainNetMm10,699 chainNetTarSyr2,425 chainNetTarSyr2,522 chainNetTarSyr2,699 chainTarSyr2,422 chainTarSyr2,519 chainTarSyr2,696 cpgIslandExt,204 cpgIslandExtUnmasked,207 cpgIslandSuper,204 gc5BaseBw,54 nestedRepeats,124 nestedRepeats,217 netHg38,422 netHg38,519 netHg38,696 netMm10,422 netMm10,519 netMm10,696 netTarSyr2,422 netTarSyr2,519 netTarSyr2,696 refSeqComposite,1119 xenoRefGene,204 displays chainHg38,122 chainMm10,122 chainNetHg38,125 chainNetMm10,125 chainNetTarSyr2,125 chainTarSyr2,122 cpgIslandExt,174 cpgIslandExtUnmasked,177 cpgIslandSuper,174 microsat,13 netHg38,122 netMm10,122 netTarSyr2,122 rmsk,145 simpleRepeat,14 xenoMrna,14 dissertation augustusGene,105 distance transMapEnsemblV5,221 transMapEstV5,190 transMapRefSeqV5,190 transMapRnaV5,190 transMapV5,296 distances transMapEnsemblV5,70 transMapEstV5,39 transMapRefSeqV5,39 transMapRnaV5,39 transMapV5,38 distant transMapEnsemblV5,270 transMapEstV5,239 transMapRefSeqV5,239 transMapRnaV5,239 transMapV5,64 transMapV5,345 distinguish HLTOGAannotvHg38v1,92 cpgIslandExt,75 cpgIslandExtUnmasked,78 cpgIslandSuper,75 distinguished gold,85 distributions augustusGene,83 genscan,42 disulf unipDisulfBond,1 uniprot,472 disulfide unipDisulfBond,4 uniprot,333 uniprot,335 diverged chainHg38,914 chainMm10,914 chainNetHg38,917 chainNetMm10,917 chainNetTarSyr2,917 chainTarSyr2,914 nestedRepeats,212 netHg38,914 netMm10,914 netTarSyr2,914 transMapV5,152 divided uniprot,56 dj mrna,473 mrna,497 xenoMrna,547 xenoMrna,571 dl mrna,501 xenoMrna,575 dna chainHg38,1023 chainMm10,1023 chainNetHg38,1026 chainNetMm10,1026 chainNetTarSyr2,1026 chainTarSyr2,1023 cpgIslandExt,60 cpgIslandExt,79 cpgIslandExt,92 cpgIslandExtUnmasked,63 cpgIslandExtUnmasked,82 cpgIslandExtUnmasked,95 cpgIslandSuper,60 cpgIslandSuper,79 cpgIslandSuper,92 genscan,219 microsat,123 nestedRepeats,33 nestedRepeats,41 netHg38,1023 netMm10,1023 netTarSyr2,1023 refSeqComposite,1085 rmsk,23 rmsk,31 rmsk,174 rmsk,177 rmsk,257 simpleRepeat,83 xenoMrna,110 do cpgIslandExt,140 cpgIslandExtUnmasked,143 cpgIslandSuper,140 refSeqComposite,390 transMapEnsemblV5,319 transMapEstV5,288 transMapRefSeqV5,288 transMapRnaV5,288 transMapV5,394 uniprot,168 uniprot,1129 doc rmsk,132 document gap,58 gold,57 documentation gap,30 gold,32 dollar cpgIslandExt,425 cpgIslandExt,427 cpgIslandExt,431 cpgIslandExt,433 cpgIslandExt,457 cpgIslandExt,459 cpgIslandExt,461 cpgIslandExt,463 cpgIslandExt,465 cpgIslandExt,468 cpgIslandExt,471 cpgIslandExt,476 cpgIslandExt,479 cpgIslandExt,481 cpgIslandExtUnmasked,428 cpgIslandExtUnmasked,430 cpgIslandExtUnmasked,434 cpgIslandExtUnmasked,436 cpgIslandExtUnmasked,460 cpgIslandExtUnmasked,462 cpgIslandExtUnmasked,464 cpgIslandExtUnmasked,466 cpgIslandExtUnmasked,468 cpgIslandExtUnmasked,471 cpgIslandExtUnmasked,474 cpgIslandExtUnmasked,479 cpgIslandExtUnmasked,482 cpgIslandExtUnmasked,484 cpgIslandSuper,425 cpgIslandSuper,427 cpgIslandSuper,431 cpgIslandSuper,433 cpgIslandSuper,457 cpgIslandSuper,459 cpgIslandSuper,461 cpgIslandSuper,463 cpgIslandSuper,465 cpgIslandSuper,468 cpgIslandSuper,471 cpgIslandSuper,476 cpgIslandSuper,479 cpgIslandSuper,481 domain unipLocExtra,4 domains unipDomain,1 unipDomain,3 unipLocCytopl,4 unipLocTransMemb,4 uniprot,255 uniprot,257 uniprot,266 uniprot,268 uniprot,277 uniprot,279 uniprot,323 uniprot,325 uniprot,331 uniprot,391 uniprot,514 uniprot,516 uniprot,519 uniprot,550 done augustusGene,265 augustusGene,281 donor genscan,31 double chainHg38,130 chainHg38,160 chainMm10,130 chainMm10,160 chainNetHg38,133 chainNetHg38,163 chainNetMm10,133 chainNetMm10,163 chainNetTarSyr2,133 chainNetTarSyr2,163 chainTarSyr2,130 chainTarSyr2,160 netHg38,130 netHg38,160 netMm10,130 netMm10,160 netTarSyr2,130 netTarSyr2,160 refSeqComposite,1020 double-lined chainHg38,221 chainMm10,221 chainNetHg38,224 chainNetMm10,224 chainNetTarSyr2,224 chainTarSyr2,221 netHg38,221 netMm10,221 netTarSyr2,221 double-sided chainHg38,104 chainMm10,104 chainNetHg38,107 chainNetMm10,107 chainNetTarSyr2,107 chainTarSyr2,104 netHg38,104 netMm10,104 netTarSyr2,104 down ensGene,186 download ensGene,93 ensGene,143 refSeqComposite,1566 refSeqComposite,1709 transMapEnsemblV5,560 transMapEstV5,529 transMapRefSeqV5,529 transMapRnaV5,529 transMapV5,635 uniprot,1744 uniprot,1983 downloaded refSeqComposite,1166 refSeqComposite,1331 refSeqComposite,1520 transMapEnsemblV5,557 transMapEnsemblV5,626 transMapEstV5,526 transMapEstV5,595 transMapRefSeqV5,526 transMapRefSeqV5,595 transMapRnaV5,526 transMapRnaV5,595 transMapV5,632 transMapV5,701 ucscToINSDC,36 ucscToRefSeq,30 uniprot,1741 uniprot,1777 downloading transMapEnsemblV5,636 transMapEstV5,605 transMapRefSeqV5,605 transMapRnaV5,605 transMapV5,711 uniprot,1787 downloads ensGene,74 ensGene,85 refSeqComposite,1334 refSeqComposite,1350 refSeqComposite,1489 refSeqComposite,1579 refSeqComposite,1604 refSeqComposite,1683 rmsk,76 uniprot,1698 downstream refSeqComposite,1458 dr refSeqComposite,1797 xenoRefGene,367 drawn gap,108 gold,127 draws uniprot,1532 drosophila augustusGene,213 due HLTOGAannotvHg38v1,207 chainHg38,144 chainHg38,214 chainHg38,226 chainMm10,144 chainMm10,214 chainMm10,226 chainNetHg38,147 chainNetHg38,217 chainNetHg38,229 chainNetMm10,147 chainNetMm10,217 chainNetMm10,229 chainNetTarSyr2,147 chainNetTarSyr2,217 chainNetTarSyr2,229 chainTarSyr2,144 chainTarSyr2,214 chainTarSyr2,226 netHg38,144 netHg38,214 netHg38,226 netMm10,144 netMm10,214 netMm10,226 netTarSyr2,144 netTarSyr2,214 netTarSyr2,226 refSeqComposite,979 uniprot,848 uniprot,919 uniprot,1368 duplicate uniprot,594 duplication chainHg38,1061 chainMm10,1061 chainNetHg38,1064 chainNetMm10,1064 chainNetTarSyr2,1064 chainTarSyr2,1061 cpgIslandExt,95 cpgIslandExtUnmasked,98 cpgIslandSuper,95 netHg38,1061 netMm10,1061 netTarSyr2,1061 duplications transMapEnsemblV5,312 transMapEnsemblV5,510 transMapEstV5,281 transMapEstV5,479 transMapRefSeqV5,281 transMapRefSeqV5,479 transMapRnaV5,281 transMapRnaV5,479 transMapV5,387 transMapV5,585 during chainHg38,819 chainMm10,819 chainNetHg38,822 chainNetMm10,822 chainNetTarSyr2,822 chainTarSyr2,819 netHg38,819 netMm10,819 netTarSyr2,819 dynamic chainHg38,652 chainMm10,652 chainNetHg38,655 chainNetMm10,655 chainNetTarSyr2,655 chainTarSyr2,652 netHg38,652 netMm10,652 netTarSyr2,652 e HLTOGAannotvHg38v1,339 ensGene,173 uniprot,2021 e.g chainHg38,373 chainMm10,373 chainNetHg38,376 chainNetMm10,376 chainNetTarSyr2,376 chainTarSyr2,373 netHg38,373 netMm10,373 netTarSyr2,373 refSeqComposite,1136 uniprot,398 uniprot,467 e247 transMapEnsemblV5,818 transMapEstV5,787 transMapRefSeqV5,787 transMapRnaV5,787 transMapV5,893 eabn3107 HLTOGAannotvHg38v1,370 each HLTOGAannotvHg38v1,132 chainHg38,259 chainMm10,259 chainNetHg38,262 chainNetMm10,262 chainNetTarSyr2,262 chainTarSyr2,259 cpgIslandExt,239 cpgIslandExt,253 cpgIslandExtUnmasked,242 cpgIslandExtUnmasked,256 cpgIslandSuper,239 cpgIslandSuper,253 genscan,99 mrna,163 nestedRepeats,120 netHg38,259 netMm10,259 netTarSyr2,259 refSeqComposite,542 refSeqComposite,1430 transMapEnsemblV5,389 transMapEnsemblV5,403 transMapEnsemblV5,412 transMapEnsemblV5,431 transMapEstV5,358 transMapEstV5,372 transMapEstV5,381 transMapEstV5,400 transMapRefSeqV5,358 transMapRefSeqV5,372 transMapRefSeqV5,381 transMapRefSeqV5,400 transMapRnaV5,358 transMapRnaV5,372 transMapRnaV5,381 transMapRnaV5,400 transMapV5,464 transMapV5,478 transMapV5,487 transMapV5,506 uniprot,151 xenoMrna,237 echo uniprot,1925 edge uniprot,1182 uniprot,1451 editors genscan,195 either chainHg38,127 chainMm10,127 chainNetHg38,130 chainNetMm10,130 chainNetTarSyr2,130 chainTarSyr2,127 gap,87 netHg38,127 netMm10,127 netTarSyr2,127 rmsk,273 uniprot,816 uniprot,1398 electronic nestedRepeats,348 rmsk,371 element rmsk,228 elements nestedRepeats,352 nestedRepeats,380 rmsk,3 rmsk,156 rmsk,164 rmsk,169 rmsk,176 rmsk,375 rmsk,403 elsevier genscan,202 em windowmaskerSdust,93 emerged chainHg38,825 chainMm10,825 chainNetHg38,828 chainNetMm10,828 chainNetTarSyr2,828 chainTarSyr2,825 netHg38,825 netMm10,825 netTarSyr2,825 encode HLTOGAannotvHg38v1,161 HLTOGAannotvHg38v1,191 HLTOGAannotvHg38v1,267 HLTOGAannotvHg38v1,290 end refSeqComposite,1054 refSeqComposite,1561 rmsk,245 transMapEnsemblV5,673 transMapEstV5,642 transMapRefSeqV5,642 transMapRnaV5,642 transMapV5,748 uniprot,126 uniprot,210 uniprot,1823 enough HLTOGAannotvHg38v1,254 refSeqComposite,1028 ensembl ensGene,1 ensGene,3 ensGene,16 ensGene,38 ensGene,57 ensGene,151 ensGene,162 ensGene,191 transMapEnsemblV5,2 transMapEnsemblV5,4 transMapEnsemblV5,20 transMapEnsemblV5,40 transMapEnsemblV5,47 transMapEnsemblV5,58 transMapEnsemblV5,592 transMapEnsemblV5,708 transMapEstV5,561 transMapEstV5,677 transMapRefSeqV5,561 transMapRefSeqV5,677 transMapRnaV5,561 transMapRnaV5,677 transMapV5,667 transMapV5,783 uniprot,731 uniprot,834 uniprot,865 ensgene.txt.gz ensGene,88 ensure transMapEnsemblV5,385 transMapEstV5,354 transMapRefSeqV5,354 transMapRnaV5,354 transMapV5,460 enter chainHg38,367 chainMm10,367 chainNetHg38,370 chainNetMm10,370 chainNetTarSyr2,370 chainTarSyr2,367 netHg38,367 netMm10,367 netTarSyr2,367 entered mrna,200 mrna,210 xenoMrna,274 xenoMrna,284 entire cpgIslandExt,301 cpgIslandExtUnmasked,304 cpgIslandSuper,301 windowmaskerSdust,37 entirely uniprot,1434 entries refSeqComposite,1359 ermolaeva refSeqComposite,1760 xenoRefGene,330 errors refSeqComposite,953 especially mrna,101 xenoMrna,175 est mrna,11 refSeqComposite,264 refSeqComposite,364 transMapEnsemblV5,689 transMapEstV5,4 transMapEstV5,18 transMapEstV5,658 transMapRefSeqV5,658 transMapRnaV5,658 transMapV5,764 xenoMrna,10 established refSeqComposite,688 ests transMapEnsemblV5,177 transMapEnsemblV5,601 transMapEstV5,2 transMapEstV5,146 transMapEstV5,570 transMapRefSeqV5,146 transMapRefSeqV5,570 transMapRnaV5,146 transMapRnaV5,570 transMapV5,252 transMapV5,676 et HLTOGAannotvHg38v1,354 cpgIslandExt,377 cpgIslandExtUnmasked,380 cpgIslandSuper,377 ensGene,45 ensGene,188 refSeqComposite,1770 transMapEnsemblV5,735 transMapEstV5,704 transMapRefSeqV5,704 transMapRnaV5,704 transMapV5,810 xenoRefGene,340 etc uniprot,479 evaluate uniprot,1461 evaluated cpgIslandExt,257 cpgIslandExtUnmasked,260 cpgIslandSuper,257 even uniprot,136 every chainHg38,275 chainMm10,275 chainNetHg38,278 chainNetMm10,278 chainNetTarSyr2,278 chainTarSyr2,275 netHg38,275 netMm10,275 netTarSyr2,275 refSeqComposite,478 uniprot,1571 evidence HLTOGAannotvHg38v1,196 HLTOGAannotvHg38v1,250 HLTOGAannotvHg38v1,283 refSeqComposite,261 refSeqComposite,276 evolution chainHg38,1058 chainMm10,1058 chainNetHg38,1061 chainNetMm10,1061 chainNetTarSyr2,1061 chainTarSyr2,1058 netHg38,1058 netMm10,1058 netTarSyr2,1058 evolutionary cpgIslandExt,98 cpgIslandExtUnmasked,101 cpgIslandSuper,98 transMapEnsemblV5,69 transMapEstV5,38 transMapRefSeqV5,38 transMapRnaV5,38 transMapV5,37 ew mrna,477 xenoMrna,551 ewing transMapEnsemblV5,729 transMapEstV5,698 transMapRefSeqV5,698 transMapRnaV5,698 transMapV5,804 exact uniprot,1622 uniprot,1747 example mrna,132 mrna,185 refSeqComposite,1535 rmsk,256 transMapEnsemblV5,448 transMapEnsemblV5,660 transMapEstV5,417 transMapEstV5,629 transMapRefSeqV5,417 transMapRefSeqV5,629 transMapRnaV5,417 transMapRnaV5,629 transMapV5,97 transMapV5,523 transMapV5,735 uniprot,1450 uniprot,1811 uniprot,1901 xenoMrna,206 xenoMrna,259 examples refSeqComposite,406 except refSeqComposite,41 uniprot,508 exclude mrna,80 mrna,285 mrna,291 xenoMrna,154 xenoMrna,359 xenoMrna,365 exe cpgIslandExt,578 cpgIslandExtUnmasked,581 cpgIslandSuper,578 uniprot,1918 exhibits HLTOGAannotvHg38v1,154 HLTOGAannotvHg38v1,183 HLTOGAannotvHg38v1,230 exist chainHg38,406 chainMm10,406 chainNetHg38,409 chainNetMm10,409 chainNetTarSyr2,409 chainTarSyr2,406 cpgIslandExt,179 cpgIslandExtUnmasked,182 cpgIslandSuper,179 gold,97 netHg38,406 netMm10,406 netTarSyr2,406 refSeqComposite,293 exists refSeqComposite,330 exon HLTOGAannotvHg38v1,312 augustusGene,86 exons HLTOGAannotvHg38v1,114 chainHg38,48 chainMm10,48 chainNetHg38,51 chainNetMm10,51 chainNetTarSyr2,51 chainTarSyr2,48 genscan,44 netHg38,48 netMm10,48 netTarSyr2,48 transMapEnsemblV5,742 transMapEstV5,711 transMapRefSeqV5,711 transMapRnaV5,711 transMapV5,817 exp cpgIslandExt,381 cpgIslandExtUnmasked,384 cpgIslandSuper,381 expanded refSeqComposite,665 expansions simpleRepeat,48 expected cpgIslandExt,285 cpgIslandExt,366 cpgIslandExtUnmasked,288 cpgIslandExtUnmasked,369 cpgIslandSuper,285 cpgIslandSuper,366 expense transMapEnsemblV5,297 transMapEstV5,266 transMapRefSeqV5,266 transMapRnaV5,266 transMapV5,372 experimentally uniprot,304 explanation gc5BaseBw,66 explored cpgIslandExt,514 cpgIslandExtUnmasked,517 cpgIslandSuper,514 ensGene,62 refSeqComposite,1307 uniprot,1716 expressed mrna,140 xenoMrna,214 expression cpgIslandExt,11 cpgIslandExt,146 cpgIslandExtUnmasked,14 cpgIslandExtUnmasked,149 cpgIslandSuper,11 cpgIslandSuper,146 extend rmsk,308 extra transMapEnsemblV5,552 transMapEstV5,521 transMapRefSeqV5,521 transMapRnaV5,521 transMapV5,627 extracellular unipLocExtra,1 unipLocExtra,3 uniprot,254 uniprot,262 uniprot,513 uniprot,566 extract refSeqComposite,1537 extracted nestedRepeats,23 f chainHg38,1031 chainMm10,1031 chainNetHg38,1034 chainNetMm10,1034 chainNetTarSyr2,1034 chainTarSyr2,1031 netHg38,1031 netMm10,1031 netTarSyr2,1031 refSeqComposite,1757 xenoRefGene,327 facilitate genscan,106 uniprot,1852 factor mrna,177 xenoMrna,251 famiglietti uniprot,2018 families uniprot,1395 family rmsk,249 faq augustusGene,45 ensGene,28 genscan,60 nestedRepeats,298 refSeqComposite,140 rmsk,321 transMapEnsemblV5,579 transMapEstV5,548 transMapRefSeqV5,548 transMapRnaV5,548 transMapV5,654 uniprot,1839 far uniprot,599 farrell refSeqComposite,1762 xenoRefGene,332 fasta refSeqComposite,1663 feature chainHg38,245 chainMm10,245 chainNetHg38,248 chainNetMm10,248 chainNetTarSyr2,248 chainTarSyr2,245 genscan,129 mrna,335 netHg38,245 netMm10,245 netTarSyr2,245 refSeqComposite,823 refSeqComposite,856 transMapEnsemblV5,117 transMapEstV5,86 transMapRefSeqV5,86 transMapRnaV5,86 transMapV5,192 uniprot,64 uniprot,524 uniprot,613 xenoMrna,409 xenoRefGene,147 xenoRefGene,180 features refSeqComposite,724 transMapEnsemblV5,654 transMapEstV5,623 transMapRefSeqV5,623 transMapRnaV5,623 transMapV5,729 uniprot,694 uniprot,1805 xenoRefGene,83 fed chainHg38,617 chainMm10,617 chainNetHg38,620 chainNetMm10,620 chainNetTarSyr2,620 chainTarSyr2,617 netHg38,617 netMm10,617 netTarSyr2,617 feedback refSeqComposite,107 uniprot,1445 uniprot,1961 fewer transMapV5,160 ffer windowmaskerSdust,96 field augustusGene,120 file cpgIslandExt,583 cpgIslandExtUnmasked,586 cpgIslandSuper,583 gap,51 gap,67 gold,50 gold,66 refSeqComposite,1171 refSeqComposite,1381 refSeqComposite,1392 refSeqComposite,1657 uniprot,884 uniprot,1511 uniprot,1614 uniprot,1737 uniprot,1756 windowmaskerSdust,77 filenames uniprot,1748 uniprot,1894 files ensGene,78 refSeqComposite,1164 refSeqComposite,1482 transMapEnsemblV5,547 transMapEnsemblV5,581 transMapEstV5,516 transMapEstV5,550 transMapRefSeqV5,516 transMapRefSeqV5,550 transMapRnaV5,516 transMapRnaV5,550 transMapV5,622 transMapV5,656 uniprot,1863 fill chainHg38,849 chainHg38,882 chainMm10,849 chainMm10,882 chainNetHg38,852 chainNetHg38,885 chainNetMm10,852 chainNetMm10,885 chainNetTarSyr2,852 chainNetTarSyr2,885 chainTarSyr2,849 chainTarSyr2,882 netHg38,849 netHg38,882 netMm10,849 netMm10,882 netTarSyr2,849 netTarSyr2,882 filled chainHg38,415 chainHg38,434 chainHg38,831 chainHg38,904 chainMm10,415 chainMm10,434 chainMm10,831 chainMm10,904 chainNetHg38,418 chainNetHg38,437 chainNetHg38,834 chainNetHg38,907 chainNetMm10,418 chainNetMm10,437 chainNetMm10,834 chainNetMm10,907 chainNetTarSyr2,418 chainNetTarSyr2,437 chainNetTarSyr2,834 chainNetTarSyr2,907 chainTarSyr2,415 chainTarSyr2,434 chainTarSyr2,831 chainTarSyr2,904 netHg38,415 netHg38,434 netHg38,831 netHg38,904 netMm10,415 netMm10,434 netMm10,831 netMm10,904 netTarSyr2,415 netTarSyr2,434 netTarSyr2,831 netTarSyr2,904 filter chainHg38,379 chainMm10,379 chainNetHg38,382 chainNetMm10,382 chainNetTarSyr2,382 chainTarSyr2,379 genscan,82 mrna,65 mrna,114 mrna,127 mrna,136 mrna,183 mrna,224 mrna,248 mrna,266 mrna,304 mrna,322 netHg38,379 netMm10,379 netTarSyr2,379 uniprot,187 uniprot,664 xenoMrna,139 xenoMrna,188 xenoMrna,201 xenoMrna,210 xenoMrna,257 xenoMrna,298 xenoMrna,322 xenoMrna,340 xenoMrna,378 xenoMrna,396 filtered mrna,287 transMapEnsemblV5,77 transMapEnsemblV5,352 transMapEstV5,46 transMapEstV5,321 transMapRefSeqV5,46 transMapRefSeqV5,321 transMapRnaV5,46 transMapRnaV5,321 transMapV5,45 transMapV5,427 uniprot,1480 uniprot,1499 xenoMrna,361 filtering mrna,226 transMapEnsemblV5,238 transMapEnsemblV5,306 transMapEstV5,207 transMapEstV5,275 transMapRefSeqV5,207 transMapRefSeqV5,275 transMapRnaV5,207 transMapRnaV5,275 transMapV5,313 transMapV5,381 uniprot,693 uniprot,912 uniprot,1154 xenoMrna,300 final cpgIslandExt,89 cpgIslandExtUnmasked,92 cpgIslandSuper,89 uniprot,1153 find chainHg38,661 chainMm10,661 chainNetHg38,664 chainNetMm10,664 chainNetTarSyr2,664 chainTarSyr2,661 netHg38,661 netMm10,661 netTarSyr2,661 rmsk,117 finder microsat,94 microsat,107 microsat,118 simpleRepeat,25 simpleRepeat,78 finding augustusGene,306 chainHg38,286 chainMm10,286 chainNetHg38,289 chainNetMm10,289 chainNetTarSyr2,289 chainTarSyr2,286 netHg38,286 netMm10,286 netTarSyr2,286 transMapEnsemblV5,777 transMapEstV5,746 transMapRefSeqV5,746 transMapRnaV5,746 transMapV5,852 finds transMapV5,159 finger uniprot,327 finished transMapEnsemblV5,363 transMapEstV5,332 transMapRefSeqV5,332 transMapRnaV5,332 transMapV5,438 first chainHg38,789 chainMm10,789 chainNetHg38,792 chainNetMm10,792 chainNetTarSyr2,792 chainTarSyr2,789 netHg38,789 netMm10,789 netTarSyr2,789 refSeqComposite,1427 uniprot,70 xenoMrna,72 fish augustusGene,201 fit chainHg38,809 chainMm10,809 chainNetHg38,812 chainNetMm10,812 chainNetTarSyr2,812 chainTarSyr2,809 nestedRepeats,175 netHg38,809 netMm10,809 netTarSyr2,809 refSeqComposite,392 five refSeqComposite,873 refSeqComposite,889 fix uniprot,851 flag nestedRepeats,287 rmsk,294 flags nestedRepeats,289 rmsk,296 fly augustusGene,214 follow refSeqComposite,598 followed cpgIslandExt,47 cpgIslandExtUnmasked,50 cpgIslandSuper,47 following chainHg38,670 chainMm10,670 chainNetHg38,673 chainNetMm10,673 chainNetTarSyr2,673 chainTarSyr2,670 cpgIslandExt,260 cpgIslandExt,408 cpgIslandExtUnmasked,263 cpgIslandExtUnmasked,411 cpgIslandSuper,260 cpgIslandSuper,408 gap,120 genscan,81 netHg38,670 netMm10,670 netTarSyr2,670 refSeqComposite,450 refSeqComposite,1548 transMapEnsemblV5,589 transMapEstV5,558 transMapRefSeqV5,558 transMapRnaV5,558 transMapV5,664 windowmaskerSdust,56 follows genscan,67 mrna,33 refSeqComposite,895 refSeqComposite,1406 transMapEnsemblV5,98 transMapEnsemblV5,216 transMapEstV5,67 transMapEstV5,185 transMapRefSeqV5,67 transMapRefSeqV5,185 transMapRnaV5,67 transMapRnaV5,185 transMapV5,173 transMapV5,291 xenoMrna,37 xenoRefGene,49 for HLTOGAannotvHg38v1,55 HLTOGAannotvHg38v1,59 augustusGene,34 augustusGene,52 augustusGene,68 augustusGene,80 augustusGene,175 augustusGene,184 augustusGene,192 augustusGene,232 augustusGene,253 augustusGene,260 augustusGene,274 chainHg38,258 chainHg38,274 chainHg38,285 chainHg38,292 chainHg38,492 chainMm10,258 chainMm10,274 chainMm10,285 chainMm10,292 chainMm10,492 chainNetHg38,261 chainNetHg38,277 chainNetHg38,288 chainNetHg38,295 chainNetHg38,495 chainNetMm10,261 chainNetMm10,277 chainNetMm10,288 chainNetMm10,295 chainNetMm10,495 chainNetTarSyr2,261 chainNetTarSyr2,277 chainNetTarSyr2,288 chainNetTarSyr2,295 chainNetTarSyr2,495 chainTarSyr2,258 chainTarSyr2,274 chainTarSyr2,285 chainTarSyr2,292 chainTarSyr2,492 cpgIslandExt,133 cpgIslandExt,162 cpgIslandExt,242 cpgIslandExt,246 cpgIslandExt,258 cpgIslandExt,309 cpgIslandExt,500 cpgIslandExt,556 cpgIslandExtUnmasked,136 cpgIslandExtUnmasked,165 cpgIslandExtUnmasked,245 cpgIslandExtUnmasked,249 cpgIslandExtUnmasked,261 cpgIslandExtUnmasked,312 cpgIslandExtUnmasked,503 cpgIslandExtUnmasked,559 cpgIslandSuper,133 cpgIslandSuper,162 cpgIslandSuper,242 cpgIslandSuper,246 cpgIslandSuper,258 cpgIslandSuper,309 cpgIslandSuper,500 cpgIslandSuper,556 cytoBandIdeo,5 ensGene,17 ensGene,30 ensGene,72 ensGene,79 ensGene,98 ensGene,152 ensGene,157 gc5BaseBw,64 genscan,49 genscan,71 genscan,124 genscan,131 genscan,174 microsat,95 mrna,37 mrna,60 mrna,131 mrna,162 mrna,184 mrna,348 mrna,361 mrna,374 nestedRepeats,35 nestedRepeats,239 nestedRepeats,293 nestedRepeats,299 nestedRepeats,311 nestedRepeats,362 netHg38,258 netHg38,274 netHg38,285 netHg38,292 netHg38,492 netMm10,258 netMm10,274 netMm10,285 netMm10,292 netMm10,492 netTarSyr2,258 netTarSyr2,274 netTarSyr2,285 netTarSyr2,292 netTarSyr2,492 refSeqComposite,42 refSeqComposite,74 refSeqComposite,93 refSeqComposite,108 refSeqComposite,124 refSeqComposite,129 refSeqComposite,236 refSeqComposite,245 refSeqComposite,331 refSeqComposite,395 refSeqComposite,454 refSeqComposite,477 refSeqComposite,541 refSeqComposite,602 refSeqComposite,723 refSeqComposite,747 refSeqComposite,851 refSeqComposite,1182 refSeqComposite,1295 refSeqComposite,1336 refSeqComposite,1446 refSeqComposite,1525 refSeqComposite,1534 refSeqComposite,1665 refSeqComposite,1693 rmsk,25 rmsk,120 rmsk,255 rmsk,300 rmsk,322 rmsk,334 rmsk,385 simpleRepeat,30 simpleRepeat,56 transMapEnsemblV5,41 transMapEnsemblV5,45 transMapEnsemblV5,67 transMapEnsemblV5,102 transMapEnsemblV5,130 transMapEnsemblV5,147 transMapEnsemblV5,190 transMapEnsemblV5,217 transMapEnsemblV5,235 transMapEnsemblV5,266 transMapEnsemblV5,268 transMapEnsemblV5,286 transMapEnsemblV5,290 transMapEnsemblV5,388 transMapEnsemblV5,402 transMapEnsemblV5,411 transMapEnsemblV5,447 transMapEnsemblV5,523 transMapEnsemblV5,538 transMapEnsemblV5,567 transMapEnsemblV5,631 transMapEnsemblV5,635 transMapEnsemblV5,659 transMapEnsemblV5,802 transMapEstV5,36 transMapEstV5,71 transMapEstV5,99 transMapEstV5,116 transMapEstV5,159 transMapEstV5,186 transMapEstV5,204 transMapEstV5,235 transMapEstV5,237 transMapEstV5,255 transMapEstV5,259 transMapEstV5,357 transMapEstV5,371 transMapEstV5,380 transMapEstV5,416 transMapEstV5,492 transMapEstV5,507 transMapEstV5,536 transMapEstV5,600 transMapEstV5,604 transMapEstV5,628 transMapEstV5,771 transMapRefSeqV5,36 transMapRefSeqV5,71 transMapRefSeqV5,99 transMapRefSeqV5,116 transMapRefSeqV5,159 transMapRefSeqV5,186 transMapRefSeqV5,204 transMapRefSeqV5,235 transMapRefSeqV5,237 transMapRefSeqV5,255 transMapRefSeqV5,259 transMapRefSeqV5,357 transMapRefSeqV5,371 transMapRefSeqV5,380 transMapRefSeqV5,416 transMapRefSeqV5,492 transMapRefSeqV5,507 transMapRefSeqV5,536 transMapRefSeqV5,600 transMapRefSeqV5,604 transMapRefSeqV5,628 transMapRefSeqV5,771 transMapRnaV5,36 transMapRnaV5,71 transMapRnaV5,99 transMapRnaV5,116 transMapRnaV5,159 transMapRnaV5,186 transMapRnaV5,204 transMapRnaV5,235 transMapRnaV5,237 transMapRnaV5,255 transMapRnaV5,259 transMapRnaV5,357 transMapRnaV5,371 transMapRnaV5,380 transMapRnaV5,416 transMapRnaV5,492 transMapRnaV5,507 transMapRnaV5,536 transMapRnaV5,600 transMapRnaV5,604 transMapRnaV5,628 transMapRnaV5,771 transMapV5,35 transMapV5,62 transMapV5,96 transMapV5,98 transMapV5,151 transMapV5,177 transMapV5,205 transMapV5,222 transMapV5,265 transMapV5,292 transMapV5,310 transMapV5,341 transMapV5,343 transMapV5,361 transMapV5,365 transMapV5,463 transMapV5,477 transMapV5,486 transMapV5,522 transMapV5,598 transMapV5,613 transMapV5,642 transMapV5,706 transMapV5,710 transMapV5,734 transMapV5,877 ucscToINSDC,45 ucscToRefSeq,39 uniprot,75 uniprot,78 uniprot,401 uniprot,405 uniprot,462 uniprot,497 uniprot,532 uniprot,549 uniprot,697 uniprot,739 uniprot,743 uniprot,770 uniprot,842 uniprot,846 uniprot,861 uniprot,886 uniprot,964 uniprot,997 uniprot,1017 uniprot,1023 uniprot,1057 uniprot,1070 uniprot,1097 uniprot,1119 uniprot,1211 uniprot,1238 uniprot,1320 uniprot,1393 uniprot,1427 uniprot,1627 uniprot,1644 uniprot,1651 uniprot,1661 uniprot,1726 uniprot,1782 uniprot,1786 uniprot,1810 uniprot,1833 uniprot,1840 uniprot,1869 uniprot,1977 uniprot,1982 uniprot,2034 windowmaskerSdust,35 windowmaskerSdust,86 windowmaskerSdust,103 xenoMrna,41 xenoMrna,64 xenoMrna,134 xenoMrna,205 xenoMrna,236 xenoMrna,258 xenoMrna,422 xenoMrna,435 xenoMrna,448 xenoRefGene,20 xenoRefGene,53 xenoRefGene,175 form uniprot,1665 format chainHg38,608 chainMm10,608 chainNetHg38,611 chainNetMm10,611 chainNetTarSyr2,611 chainTarSyr2,608 ensGene,77 ensGene,97 gap,63 gold,62 netHg38,608 netMm10,608 netTarSyr2,608 refSeqComposite,1172 refSeqComposite,1362 refSeqComposite,1382 refSeqComposite,1408 refSeqComposite,1422 refSeqComposite,1569 refSeqComposite,1583 refSeqComposite,1591 refSeqComposite,1664 transMapEnsemblV5,420 transMapEstV5,389 transMapRefSeqV5,389 transMapRnaV5,389 transMapV5,495 formats refSeqComposite,1181 uniprot,885 uniprot,1865 formula cpgIslandExt,373 cpgIslandExtUnmasked,376 cpgIslandSuper,373 forth chainHg38,441 chainMm10,441 chainNetHg38,444 chainNetMm10,444 chainNetTarSyr2,444 chainTarSyr2,441 netHg38,441 netMm10,441 netTarSyr2,441 found augustusGene,100 ensGene,139 gold,138 mrna,416 refSeqComposite,1196 refSeqComposite,1395 refSeqComposite,1680 refSeqComposite,1705 transMapEnsemblV5,643 transMapEstV5,612 transMapRefSeqV5,612 transMapRnaV5,612 transMapV5,718 uniprot,241 uniprot,1128 uniprot,1271 uniprot,1328 uniprot,1557 uniprot,1751 uniprot,1794 xenoMrna,489 four chainHg38,509 chainMm10,509 chainNetHg38,512 chainNetMm10,512 chainNetTarSyr2,512 chainTarSyr2,509 netHg38,509 netMm10,509 netTarSyr2,509 xenoMrna,119 fragment gap,125 fragments gold,4 nestedRepeats,3 nestedRepeats,19 nestedRepeats,82 nestedRepeats,101 nestedRepeats,127 nestedRepeats,139 nestedRepeats,191 nestedRepeats,205 nestedRepeats,208 free uniprot,1435 from HLTOGAannotvHg38v1,21 HLTOGAannotvHg38v1,94 HLTOGAannotvHg38v1,330 augustusGene,19 chainHg38,176 chainHg38,304 chainHg38,561 chainHg38,584 chainHg38,766 chainHg38,939 chainHg38,971 chainMm10,176 chainMm10,304 chainMm10,561 chainMm10,584 chainMm10,766 chainMm10,939 chainMm10,971 chainNetHg38,179 chainNetHg38,307 chainNetHg38,564 chainNetHg38,587 chainNetHg38,769 chainNetHg38,942 chainNetHg38,974 chainNetMm10,179 chainNetMm10,307 chainNetMm10,564 chainNetMm10,587 chainNetMm10,769 chainNetMm10,942 chainNetMm10,974 chainNetTarSyr2,179 chainNetTarSyr2,307 chainNetTarSyr2,564 chainNetTarSyr2,587 chainNetTarSyr2,769 chainNetTarSyr2,942 chainNetTarSyr2,974 chainTarSyr2,176 chainTarSyr2,304 chainTarSyr2,561 chainTarSyr2,584 chainTarSyr2,766 chainTarSyr2,939 chainTarSyr2,971 cpgIslandExt,81 cpgIslandExt,496 cpgIslandExt,535 cpgIslandExt,563 cpgIslandExt,574 cpgIslandExtUnmasked,84 cpgIslandExtUnmasked,499 cpgIslandExtUnmasked,538 cpgIslandExtUnmasked,566 cpgIslandExtUnmasked,577 cpgIslandSuper,81 cpgIslandSuper,496 cpgIslandSuper,535 cpgIslandSuper,563 cpgIslandSuper,574 ensGene,106 ensGene,112 gap,48 genscan,15 gold,3 gold,47 mrna,7 mrna,449 nestedRepeats,24 nestedRepeats,50 nestedRepeats,72 netHg38,176 netHg38,304 netHg38,561 netHg38,584 netHg38,766 netHg38,939 netHg38,971 netMm10,176 netMm10,304 netMm10,561 netMm10,584 netMm10,766 netMm10,939 netMm10,971 netTarSyr2,176 netTarSyr2,304 netTarSyr2,561 netTarSyr2,584 netTarSyr2,766 netTarSyr2,939 netTarSyr2,971 refSeqComposite,5 refSeqComposite,26 refSeqComposite,289 refSeqComposite,295 refSeqComposite,423 refSeqComposite,485 refSeqComposite,843 refSeqComposite,1103 refSeqComposite,1158 refSeqComposite,1167 refSeqComposite,1332 refSeqComposite,1487 refSeqComposite,1515 refSeqComposite,1528 refSeqComposite,1576 refSeqComposite,1597 refSeqComposite,1611 refSeqComposite,1718 rmsk,86 transMapEnsemblV5,29 transMapEnsemblV5,158 transMapEnsemblV5,558 transMapEnsemblV5,621 transMapEnsemblV5,686 transMapEstV5,27 transMapEstV5,127 transMapEstV5,527 transMapEstV5,590 transMapEstV5,655 transMapRefSeqV5,27 transMapRefSeqV5,127 transMapRefSeqV5,527 transMapRefSeqV5,590 transMapRefSeqV5,655 transMapRnaV5,27 transMapRnaV5,127 transMapRnaV5,527 transMapRnaV5,590 transMapRnaV5,655 transMapV5,26 transMapV5,112 transMapV5,233 transMapV5,633 transMapV5,696 transMapV5,761 ucscToINSDC,25 ucscToINSDC,37 ucscToRefSeq,20 ucscToRefSeq,31 uniprot,21 uniprot,36 uniprot,115 uniprot,198 uniprot,250 uniprot,557 uniprot,747 uniprot,831 uniprot,890 uniprot,915 uniprot,1507 uniprot,1696 uniprot,1742 uniprot,1772 uniprot,1844 uniprot,1953 uniprot,1962 windowmaskerSdust,41 xenoMrna,6 xenoMrna,25 xenoMrna,523 xenoRefGene,27 xenoRefGene,167 xenoRefGene,287 frommer cpgIslandExt,606 cpgIslandExtUnmasked,609 cpgIslandSuper,606 ftp windowmaskerSdust,44 full chainHg38,239 chainHg38,385 chainMm10,239 chainMm10,385 chainNetHg38,242 chainNetHg38,388 chainNetMm10,242 chainNetMm10,388 chainNetTarSyr2,242 chainNetTarSyr2,388 chainTarSyr2,239 chainTarSyr2,385 nestedRepeats,118 netHg38,239 netHg38,385 netMm10,239 netMm10,385 netTarSyr2,239 netTarSyr2,385 rmsk,140 transMapEnsemblV5,52 transMapEnsemblV5,280 transMapEstV5,249 transMapRefSeqV5,249 transMapRnaV5,249 transMapV5,355 uniprot,486 uniprot,528 uniprot,540 full-length refSeqComposite,266 functional HLTOGAannotvHg38v1,162 HLTOGAannotvHg38v1,192 HLTOGAannotvHg38v1,269 HLTOGAannotvHg38v1,292 furthermore augustusGene,64 future rmsk,272 g cpgIslandExt,51 cpgIslandExt,392 cpgIslandExt,597 cpgIslandExtUnmasked,54 cpgIslandExtUnmasked,395 cpgIslandExtUnmasked,600 cpgIslandSuper,51 cpgIslandSuper,392 cpgIslandSuper,597 ensGene,175 gc5BaseBw,20 microsat,115 refSeqComposite,904 refSeqComposite,956 refSeqComposite,1080 simpleRepeat,75 g-24-18698-175 chainNetTarSyr2,681 chainTarSyr2,678 netTarSyr2,678 g-31-125100-114 chainMm10,678 chainNetMm10,681 netMm10,678 g-40-18893-178 chainHg38,678 chainNetHg38,681 netHg38,678 galgal6 HLTOGAannotvHg38v1,58 gambiae augustusGene,219 gap chainHg38,77 chainHg38,87 chainHg38,188 chainHg38,478 chainHg38,490 chainHg38,513 chainHg38,531 chainHg38,546 chainHg38,563 chainHg38,702 chainHg38,833 chainMm10,77 chainMm10,87 chainMm10,188 chainMm10,478 chainMm10,490 chainMm10,513 chainMm10,531 chainMm10,546 chainMm10,563 chainMm10,702 chainMm10,833 chainNetHg38,80 chainNetHg38,90 chainNetHg38,191 chainNetHg38,481 chainNetHg38,493 chainNetHg38,516 chainNetHg38,534 chainNetHg38,549 chainNetHg38,566 chainNetHg38,705 chainNetHg38,836 chainNetMm10,80 chainNetMm10,90 chainNetMm10,191 chainNetMm10,481 chainNetMm10,493 chainNetMm10,516 chainNetMm10,534 chainNetMm10,549 chainNetMm10,566 chainNetMm10,705 chainNetMm10,836 chainNetTarSyr2,80 chainNetTarSyr2,90 chainNetTarSyr2,191 chainNetTarSyr2,481 chainNetTarSyr2,493 chainNetTarSyr2,516 chainNetTarSyr2,534 chainNetTarSyr2,549 chainNetTarSyr2,566 chainNetTarSyr2,705 chainNetTarSyr2,836 chainTarSyr2,77 chainTarSyr2,87 chainTarSyr2,188 chainTarSyr2,478 chainTarSyr2,490 chainTarSyr2,513 chainTarSyr2,531 chainTarSyr2,546 chainTarSyr2,563 chainTarSyr2,702 chainTarSyr2,833 gap,1 gap,2 gap,91 gap,102 gap,115 mrna,369 netHg38,77 netHg38,87 netHg38,188 netHg38,478 netHg38,490 netHg38,513 netHg38,531 netHg38,546 netHg38,563 netHg38,702 netHg38,833 netMm10,77 netMm10,87 netMm10,188 netMm10,478 netMm10,490 netMm10,513 netMm10,531 netMm10,546 netMm10,563 netMm10,702 netMm10,833 netTarSyr2,77 netTarSyr2,87 netTarSyr2,188 netTarSyr2,478 netTarSyr2,490 netTarSyr2,513 netTarSyr2,531 netTarSyr2,546 netTarSyr2,563 netTarSyr2,702 netTarSyr2,833 refSeqComposite,930 refSeqComposite,963 refSeqComposite,1019 refSeqComposite,1021 transMapEnsemblV5,142 transMapEstV5,111 transMapRefSeqV5,111 transMapRnaV5,111 transMapV5,217 xenoMrna,443 gapless chainHg38,645 chainMm10,645 chainNetHg38,648 chainNetMm10,648 chainNetTarSyr2,648 chainTarSyr2,645 netHg38,645 netMm10,645 netTarSyr2,645 gaps HLTOGAannotvHg38v1,210 chainHg38,83 chainHg38,94 chainHg38,106 chainHg38,140 chainHg38,165 chainHg38,211 chainHg38,222 chainHg38,405 chainHg38,427 chainHg38,454 chainHg38,888 chainHg38,894 chainMm10,83 chainMm10,94 chainMm10,106 chainMm10,140 chainMm10,165 chainMm10,211 chainMm10,222 chainMm10,405 chainMm10,427 chainMm10,454 chainMm10,888 chainMm10,894 chainNetHg38,86 chainNetHg38,97 chainNetHg38,109 chainNetHg38,143 chainNetHg38,168 chainNetHg38,214 chainNetHg38,225 chainNetHg38,408 chainNetHg38,430 chainNetHg38,457 chainNetHg38,891 chainNetHg38,897 chainNetMm10,86 chainNetMm10,97 chainNetMm10,109 chainNetMm10,143 chainNetMm10,168 chainNetMm10,214 chainNetMm10,225 chainNetMm10,408 chainNetMm10,430 chainNetMm10,457 chainNetMm10,891 chainNetMm10,897 chainNetTarSyr2,86 chainNetTarSyr2,97 chainNetTarSyr2,109 chainNetTarSyr2,143 chainNetTarSyr2,168 chainNetTarSyr2,214 chainNetTarSyr2,225 chainNetTarSyr2,408 chainNetTarSyr2,430 chainNetTarSyr2,457 chainNetTarSyr2,891 chainNetTarSyr2,897 chainTarSyr2,83 chainTarSyr2,94 chainTarSyr2,106 chainTarSyr2,140 chainTarSyr2,165 chainTarSyr2,211 chainTarSyr2,222 chainTarSyr2,405 chainTarSyr2,427 chainTarSyr2,454 chainTarSyr2,888 chainTarSyr2,894 gap,12 gap,43 gap,68 gap,124 gap,126 gold,96 netHg38,83 netHg38,94 netHg38,106 netHg38,140 netHg38,165 netHg38,211 netHg38,222 netHg38,405 netHg38,427 netHg38,454 netHg38,888 netHg38,894 netMm10,83 netMm10,94 netMm10,106 netMm10,140 netMm10,165 netMm10,211 netMm10,222 netMm10,405 netMm10,427 netMm10,454 netMm10,888 netMm10,894 netTarSyr2,83 netTarSyr2,94 netTarSyr2,106 netTarSyr2,140 netTarSyr2,165 netTarSyr2,211 netTarSyr2,222 netTarSyr2,405 netTarSyr2,427 netTarSyr2,454 netTarSyr2,888 netTarSyr2,894 refSeqComposite,933 refSeqComposite,1024 gardiner-garden cpgIslandExt,376 cpgIslandExt,604 cpgIslandExtUnmasked,379 cpgIslandExtUnmasked,607 cpgIslandSuper,376 cpgIslandSuper,604 gary microsat,111 simpleRepeat,71 gasteiger uniprot,2020 gattiker uniprot,2016 gbdb refSeqComposite,1553 transMapEnsemblV5,664 transMapEstV5,633 transMapRefSeqV5,633 transMapRnaV5,633 transMapV5,739 uniprot,1815 gc cpgIslandExt,262 cpgIslandExtUnmasked,265 cpgIslandSuper,262 gc5BaseBw,1 gc5BaseBw,3 gc5BaseBw,13 gc5BaseBw,30 genbank mrna,8 mrna,23 mrna,387 mrna,478 mrna,502 transMapEnsemblV5,172 transMapEnsemblV5,175 transMapEstV5,16 transMapEstV5,141 transMapEstV5,144 transMapRefSeqV5,141 transMapRefSeqV5,144 transMapRnaV5,4 transMapRnaV5,17 transMapRnaV5,141 transMapRnaV5,144 transMapV5,247 transMapV5,250 uniprot,376 xenoMrna,7 xenoMrna,24 xenoMrna,552 xenoMrna,576 gencode transMapEnsemblV5,6 transMapEnsemblV5,18 transMapEnsemblV5,38 transMapEnsemblV5,710 transMapEstV5,679 transMapRefSeqV5,679 transMapRnaV5,679 transMapV5,785 uniprot,730 gene HLTOGAannotvHg38v1,13 HLTOGAannotvHg38v1,30 HLTOGAannotvHg38v1,47 HLTOGAannotvHg38v1,357 augustusGene,5 augustusGene,10 augustusGene,40 augustusGene,112 augustusGene,157 augustusGene,163 augustusGene,305 augustusGene,320 cpgIslandExt,145 cpgIslandExtUnmasked,148 cpgIslandSuper,145 ensGene,7 ensGene,11 ensGene,23 ensGene,39 ensGene,58 ensGene,155 genscan,4 genscan,8 genscan,55 genscan,72 genscan,111 genscan,117 genscan,214 ncbiRefSeq,17 ncbiRefSeqCurated,15 ncbiRefSeqGenomicDiff,14 ncbiRefSeqOther,17 ncbiRefSeqPredicted,13 ncbiRefSeqPsl,9 refSeqComposite,9 refSeqComposite,109 refSeqComposite,135 refSeqComposite,411 refSeqComposite,544 refSeqComposite,562 refSeqComposite,603 refSeqComposite,771 refSeqComposite,789 refSeqComposite,801 refSeqComposite,832 refSeqComposite,861 transMapEnsemblV5,12 transMapEnsemblV5,53 transMapEnsemblV5,59 transMapEnsemblV5,393 transMapEnsemblV5,776 transMapEstV5,10 transMapEstV5,362 transMapEstV5,745 transMapRefSeqV5,5 transMapRefSeqV5,11 transMapRefSeqV5,18 transMapRefSeqV5,362 transMapRefSeqV5,745 transMapRnaV5,11 transMapRnaV5,362 transMapRnaV5,745 transMapV5,9 transMapV5,17 transMapV5,468 transMapV5,851 unipAliSwissprot,20 unipAliTrembl,12 unipChain,10 unipConflict,8 unipDisulfBond,8 unipDomain,6 unipInterest,8 unipLocCytopl,7 unipLocExtra,7 unipLocSignal,8 unipLocTransMemb,7 unipModif,9 unipMut,8 unipOther,8 unipRepeat,6 unipStruct,10 uniprot,9 uniprot,732 uniprot,1025 uniprot,1050 uniprot,1059 uniprot,1080 uniprot,1281 uniprot,1394 xenoRefGene,9 xenoRefGene,54 xenoRefGene,108 xenoRefGene,123 xenoRefGene,128 xenoRefGene,156 xenoRefGene,185 gene-inactivating HLTOGAannotvHg38v1,156 gene-rich gc5BaseBw,36 genedx uniprot,1973 genepred ensGene,76 refSeqComposite,1177 refSeqComposite,1407 refSeqComposite,1582 genepredtogtf refSeqComposite,1594 refSeqComposite,1617 refSeqComposite,1624 generally rmsk,72 uniprot,248 generate nestedRepeats,261 nestedRepeats,320 rmsk,343 generated cpgIslandExt,588 cpgIslandExtUnmasked,591 cpgIslandSuper,588 ensGene,14 nestedRepeats,282 refSeqComposite,484 refSeqComposite,1203 refSeqComposite,1720 rmsk,289 xenoRefGene,291 generating augustusGene,189 genes HLTOGAannotvHg38v1,11 HLTOGAannotvHg38v1,36 HLTOGAannotvHg38v1,101 augustusGene,8 augustusGene,44 cpgIslandExt,20 cpgIslandExt,23 cpgIslandExtUnmasked,23 cpgIslandExtUnmasked,26 cpgIslandSuper,20 cpgIslandSuper,23 ensGene,2 ensGene,4 ensGene,5 ensGene,27 ensGene,92 genscan,2 genscan,6 genscan,59 ncbiRefSeq,5 ncbiRefSeq,15 ncbiRefSeqCurated,5 ncbiRefSeqCurated,13 ncbiRefSeqGenomicDiff,12 ncbiRefSeqOther,15 ncbiRefSeqPredicted,5 ncbiRefSeqPredicted,11 ncbiRefSeqPsl,7 refSeqComposite,4 refSeqComposite,7 refSeqComposite,15 refSeqComposite,24 refSeqComposite,139 refSeqComposite,238 refSeqComposite,432 refSeqComposite,510 refSeqComposite,1215 refSeqComposite,1226 simpleRepeat,41 transMapEnsemblV5,10 transMapEnsemblV5,88 transMapEnsemblV5,171 transMapEnsemblV5,185 transMapEnsemblV5,292 transMapEnsemblV5,806 transMapEstV5,8 transMapEstV5,57 transMapEstV5,140 transMapEstV5,154 transMapEstV5,261 transMapEstV5,775 transMapRefSeqV5,9 transMapRefSeqV5,57 transMapRefSeqV5,140 transMapRefSeqV5,154 transMapRefSeqV5,261 transMapRefSeqV5,775 transMapRnaV5,9 transMapRnaV5,57 transMapRnaV5,140 transMapRnaV5,154 transMapRnaV5,261 transMapRnaV5,775 transMapV5,7 transMapV5,58 transMapV5,73 transMapV5,246 transMapV5,260 transMapV5,367 transMapV5,881 unipAliSwissprot,18 unipAliTrembl,10 unipChain,8 unipConflict,6 unipDisulfBond,6 unipDomain,4 unipInterest,6 unipLocCytopl,5 unipLocExtra,5 unipLocSignal,6 unipLocTransMemb,5 unipModif,7 unipMut,6 unipOther,6 unipRepeat,4 unipStruct,8 uniprot,7 uniprot,1300 xenoRefGene,6 xenoRefGene,7 xenoRefGene,19 xenoRefGene,194 xenoRefGene,202 xenoRefGene,213 genet nestedRepeats,354 nestedRepeats,386 nestedRepeats,408 rmsk,377 rmsk,409 rmsk,431 genetic nestedRepeats,52 rmsk,88 genome HLTOGAannotvHg38v1,22 HLTOGAannotvHg38v1,64 HLTOGAannotvHg38v1,71 augustusGene,31 chainHg38,19 chainHg38,74 chainHg38,206 chainHg38,281 chainHg38,294 chainHg38,787 chainHg38,1108 chainMm10,19 chainMm10,74 chainMm10,206 chainMm10,281 chainMm10,294 chainMm10,787 chainMm10,1108 chainNetHg38,22 chainNetHg38,77 chainNetHg38,209 chainNetHg38,284 chainNetHg38,297 chainNetHg38,790 chainNetHg38,1111 chainNetMm10,22 chainNetMm10,77 chainNetMm10,209 chainNetMm10,284 chainNetMm10,297 chainNetMm10,790 chainNetMm10,1111 chainNetTarSyr2,22 chainNetTarSyr2,77 chainNetTarSyr2,209 chainNetTarSyr2,284 chainNetTarSyr2,297 chainNetTarSyr2,790 chainNetTarSyr2,1111 chainTarSyr2,19 chainTarSyr2,74 chainTarSyr2,206 chainTarSyr2,281 chainTarSyr2,294 chainTarSyr2,787 chainTarSyr2,1108 cpgIslandExt,164 cpgIslandExt,302 cpgIslandExtUnmasked,167 cpgIslandExtUnmasked,305 cpgIslandSuper,164 cpgIslandSuper,302 ensGene,164 ensGene,192 gap,19 gap,21 gap,129 gold,21 gold,23 gold,151 mrna,26 mrna,395 mrna,525 ncbiRefSeqGenomicDiff,11 nestedRepeats,405 netHg38,19 netHg38,74 netHg38,206 netHg38,281 netHg38,294 netHg38,787 netHg38,1108 netMm10,19 netMm10,74 netMm10,206 netMm10,281 netMm10,294 netMm10,787 netMm10,1108 netTarSyr2,19 netTarSyr2,74 netTarSyr2,206 netTarSyr2,281 netTarSyr2,294 netTarSyr2,787 netTarSyr2,1108 refSeqComposite,57 refSeqComposite,291 refSeqComposite,299 refSeqComposite,308 refSeqComposite,326 refSeqComposite,370 refSeqComposite,444 refSeqComposite,467 refSeqComposite,500 refSeqComposite,881 refSeqComposite,928 refSeqComposite,978 refSeqComposite,1064 refSeqComposite,1077 refSeqComposite,1111 refSeqComposite,1124 refSeqComposite,1186 refSeqComposite,1236 refSeqComposite,1450 refSeqComposite,1739 rmsk,428 transMapEnsemblV5,36 transMapEnsemblV5,164 transMapEnsemblV5,181 transMapEnsemblV5,206 transMapEnsemblV5,336 transMapEnsemblV5,347 transMapEnsemblV5,408 transMapEnsemblV5,418 transMapEnsemblV5,452 transMapEnsemblV5,475 transMapEnsemblV5,608 transMapEnsemblV5,746 transMapEstV5,34 transMapEstV5,133 transMapEstV5,150 transMapEstV5,175 transMapEstV5,305 transMapEstV5,316 transMapEstV5,377 transMapEstV5,387 transMapEstV5,421 transMapEstV5,444 transMapEstV5,577 transMapEstV5,715 transMapRefSeqV5,34 transMapRefSeqV5,133 transMapRefSeqV5,150 transMapRefSeqV5,175 transMapRefSeqV5,305 transMapRefSeqV5,316 transMapRefSeqV5,377 transMapRefSeqV5,387 transMapRefSeqV5,421 transMapRefSeqV5,444 transMapRefSeqV5,577 transMapRefSeqV5,715 transMapRnaV5,34 transMapRnaV5,133 transMapRnaV5,150 transMapRnaV5,175 transMapRnaV5,305 transMapRnaV5,316 transMapRnaV5,377 transMapRnaV5,387 transMapRnaV5,421 transMapRnaV5,444 transMapRnaV5,577 transMapRnaV5,715 transMapV5,33 transMapV5,85 transMapV5,239 transMapV5,256 transMapV5,281 transMapV5,411 transMapV5,422 transMapV5,483 transMapV5,493 transMapV5,527 transMapV5,550 transMapV5,683 transMapV5,821 ucscToINSDC,18 ucscToRefSeq,13 unipAliSwissprot,9 unipAliTrembl,9 uniprot,88 uniprot,103 uniprot,120 uniprot,203 uniprot,216 uniprot,609 uniprot,642 uniprot,717 uniprot,749 uniprot,803 uniprot,811 uniprot,910 uniprot,1141 uniprot,1377 uniprot,1494 uniprot,1520 uniprot,1543 uniprot,1730 uniprot,1847 uniprot,1858 uniprot,1891 xenoMrna,469 xenoMrna,599 xenoRefGene,226 xenoRefGene,309 genome-wide refSeqComposite,1502 genome.bed uniprot,1935 uniprot,1937 genomes chainHg38,25 chainHg38,589 chainHg38,1070 chainMm10,25 chainMm10,589 chainMm10,1070 chainNetHg38,28 chainNetHg38,592 chainNetHg38,1073 chainNetMm10,28 chainNetMm10,592 chainNetMm10,1073 chainNetTarSyr2,28 chainNetTarSyr2,592 chainNetTarSyr2,1073 chainTarSyr2,25 chainTarSyr2,589 chainTarSyr2,1070 cpgIslandExt,612 cpgIslandExtUnmasked,615 cpgIslandSuper,612 nestedRepeats,369 nestedRepeats,383 netHg38,25 netHg38,589 netHg38,1070 netMm10,25 netMm10,589 netMm10,1070 netTarSyr2,25 netTarSyr2,589 netTarSyr2,1070 refSeqComposite,573 refSeqComposite,1808 rmsk,392 rmsk,406 transMapEnsemblV5,364 transMapEnsemblV5,372 transMapEstV5,333 transMapEstV5,341 transMapRefSeqV5,333 transMapRefSeqV5,341 transMapRnaV5,333 transMapRnaV5,341 transMapV5,439 transMapV5,447 uniprot,863 uniprot,941 windowmaskerSdust,105 xenoRefGene,378 genomic HLTOGAannotvHg38v1,122 chainHg38,497 chainHg38,1022 chainHg38,1038 chainMm10,497 chainMm10,1022 chainMm10,1038 chainNetHg38,500 chainNetHg38,1025 chainNetHg38,1041 chainNetMm10,500 chainNetMm10,1025 chainNetMm10,1041 chainNetTarSyr2,500 chainNetTarSyr2,1025 chainNetTarSyr2,1041 chainTarSyr2,497 chainTarSyr2,1022 chainTarSyr2,1038 genscan,92 genscan,218 mrna,346 mrna,437 netHg38,497 netHg38,1022 netHg38,1038 netMm10,497 netMm10,1022 netMm10,1038 netTarSyr2,497 netTarSyr2,1022 netTarSyr2,1038 refSeqComposite,840 refSeqComposite,908 refSeqComposite,932 refSeqComposite,1023 refSeqComposite,1081 refSeqComposite,1286 transMapEnsemblV5,128 transMapEstV5,97 transMapRefSeqV5,97 transMapRnaV5,97 transMapV5,203 uniprot,28 uniprot,450 windowmaskerSdust,3 xenoMrna,102 xenoMrna,420 xenoMrna,511 xenoRefGene,164 xenoRefGene,276 genomics chainHg38,11 chainMm10,11 chainNetHg38,14 chainNetHg38Viewchain,12 chainNetHg38Viewnet,12 chainNetMm10,14 chainNetMm10Viewchain,12 chainNetMm10Viewnet,12 chainNetTarSyr2,14 chainNetTarSyr2Viewchain,12 chainNetTarSyr2Viewnet,12 chainTarSyr2,11 netHg38,11 netMm10,11 netTarSyr2,11 transMapEnsemblV5,745 transMapEnsemblV5,800 transMapEstV5,714 transMapEstV5,769 transMapRefSeqV5,714 transMapRefSeqV5,769 transMapRnaV5,714 transMapRnaV5,769 transMapV5,820 transMapV5,875 genscan genscan,1 genscan,3 genscan,17 genscan,136 genscan,177 gertz windowmaskerSdust,92 gff refSeqComposite,1170 giri nestedRepeats,56 nestedRepeats,310 rmsk,92 rmsk,333 github uniprot,1559 github.com HLTOGAannotvHg38v1,331 give transMapEnsemblV5,440 transMapEstV5,409 transMapRefSeqV5,409 transMapRnaV5,409 transMapV5,515 xenoMrna,112 given refSeqComposite,1542 transMapEnsemblV5,484 transMapEnsemblV5,657 transMapEstV5,453 transMapEstV5,626 transMapRefSeqV5,453 transMapRefSeqV5,626 transMapRnaV5,453 transMapRnaV5,626 transMapV5,559 transMapV5,732 uniprot,741 uniprot,1235 uniprot,1240 uniprot,1808 global transMapEnsemblV5,357 transMapEstV5,326 transMapRefSeqV5,326 transMapRnaV5,326 transMapV5,432 glyco uniprot,469 glycosylation uniprot,341 uniprot,584 gnomon refSeqComposite,375 go genscan,113 mrna,354 mrna,377 refSeqComposite,857 uniprot,1412 xenoMrna,428 xenoMrna,451 xenoRefGene,181 gold gold,91 gold,105 goldenpath uniprot,1907 gr refSeqComposite,1753 xenoRefGene,323 graph gc5BaseBw,59 gc5BaseBw,78 graphical chainHg38,444 chainMm10,444 chainNetHg38,447 chainNetMm10,447 chainNetTarSyr2,447 chainTarSyr2,444 gold,130 netHg38,444 netMm10,444 netTarSyr2,444 rmsk,211 grch38 chainHg38,6 chainHg38,68 chainHg38,308 chainNetHg38,7 chainNetHg38,71 chainNetHg38,311 chainNetHg38Viewchain,5 chainNetHg38Viewnet,5 netHg38,6 netHg38,68 netHg38,308 grcm38 chainMm10,6 chainMm10,68 chainMm10,308 chainNetMm10,7 chainNetMm10,71 chainNetMm10,311 chainNetMm10Viewchain,5 chainNetMm10Viewnet,5 netMm10,6 netMm10,68 netMm10,308 greater cpgIslandExt,267 cpgIslandExt,269 cpgIslandExt,274 cpgIslandExtUnmasked,270 cpgIslandExtUnmasked,272 cpgIslandExtUnmasked,277 cpgIslandSuper,267 cpgIslandSuper,269 cpgIslandSuper,274 green cpgIslandExt,10 cpgIslandExtUnmasked,13 cpgIslandSuper,10 nestedRepeats,328 rmsk,351 uniprot,588 uniprot,593 group augustusGene,198 augustusGene,235 chainHg38,637 chainMm10,637 chainNetHg38,640 chainNetMm10,640 chainNetTarSyr2,640 chainTarSyr2,637 netHg38,637 netMm10,637 netTarSyr2,637 refSeqComposite,388 refSeqComposite,449 uniprot,430 groups augustusGene,194 gs cpgIslandExt,294 cpgIslandExtUnmasked,297 cpgIslandSuper,294 gt cpgIslandExt,422 cpgIslandExt,488 cpgIslandExtUnmasked,425 cpgIslandExtUnmasked,491 cpgIslandSuper,422 cpgIslandSuper,488 uniprot,907 uniprot,909 uniprot,1930 gtf ensGene,96 refSeqComposite,1568 refSeqComposite,1578 refSeqComposite,1590 guanine cpgIslandExt,52 cpgIslandExtUnmasked,55 cpgIslandSuper,52 gc5BaseBw,21 h uniprot,2013 had transMapEnsemblV5,195 transMapEstV5,164 transMapRefSeqV5,164 transMapRnaV5,164 transMapV5,270 haeussler uniprot,1945 handful uniprot,1180 haplotype uniprot,852 hard cpgIslandExt,416 cpgIslandExtUnmasked,419 cpgIslandSuper,416 hardison chainHg38,941 chainHg38,1098 chainMm10,941 chainMm10,1098 chainNetHg38,944 chainNetHg38,1101 chainNetMm10,944 chainNetMm10,1101 chainNetTarSyr2,944 chainNetTarSyr2,1101 chainTarSyr2,941 chainTarSyr2,1098 netHg38,941 netHg38,1098 netMm10,941 netMm10,1098 netTarSyr2,941 netTarSyr2,1098 harris chainHg38,1015 chainMm10,1015 chainNetHg38,1018 chainNetMm10,1018 chainNetTarSyr2,1018 chainTarSyr2,1015 netHg38,1015 netMm10,1015 netTarSyr2,1015 hart refSeqComposite,1764 xenoRefGene,334 has mrna,63 nestedRepeats,246 refSeqComposite,617 refSeqComposite,638 refSeqComposite,674 refSeqComposite,686 refSeqComposite,699 refSeqComposite,818 transMapV5,146 uniprot,33 uniprot,46 uniprot,154 uniprot,606 uniprot,1195 uniprot,1232 uniprot,1381 xenoMrna,137 xenoRefGene,68 haussler augustusGene,292 chainHg38,976 chainHg38,1056 chainHg38,1100 chainMm10,976 chainMm10,1056 chainMm10,1100 chainNetHg38,979 chainNetHg38,1059 chainNetHg38,1103 chainNetMm10,979 chainNetMm10,1059 chainNetMm10,1103 chainNetTarSyr2,979 chainNetTarSyr2,1059 chainNetTarSyr2,1103 chainTarSyr2,976 chainTarSyr2,1056 chainTarSyr2,1100 netHg38,976 netHg38,1056 netHg38,1100 netMm10,976 netMm10,1056 netMm10,1100 netTarSyr2,976 netTarSyr2,1056 netTarSyr2,1100 transMapEnsemblV5,763 transMapEnsemblV5,797 transMapEstV5,732 transMapEstV5,766 transMapRefSeqV5,732 transMapRefSeqV5,766 transMapRnaV5,732 transMapRnaV5,766 transMapV5,838 transMapV5,872 have chainHg38,573 chainMm10,573 chainNetHg38,576 chainNetMm10,576 chainNetTarSyr2,576 chainTarSyr2,573 nestedRepeats,88 netHg38,573 netMm10,573 netTarSyr2,573 rmsk,69 rmsk,108 uniprot,170 uniprot,302 uniprot,942 uniprot,1000 uniprot,1042 uniprot,1444 having cpgIslandExt,138 cpgIslandExtUnmasked,141 cpgIslandSuper,138 mrna,410 mrna,419 refSeqComposite,1259 refSeqComposite,1268 xenoMrna,483 xenoMrna,493 xenoRefGene,249 xenoRefGene,258 heavily uniprot,1533 helices uniprot,366 help cpgIslandExt,546 cpgIslandExtUnmasked,549 cpgIslandSuper,546 ensGene,126 gc5BaseBw,61 refSeqComposite,125 helpful mrna,91 xenoMrna,165 helps cpgIslandExt,74 cpgIslandExtUnmasked,77 cpgIslandSuper,74 hence xenoMrna,91 here refSeqComposite,994 refSeqComposite,1197 refSeqComposite,1469 refSeqComposite,1491 refSeqComposite,1685 rmsk,127 transMapEnsemblV5,137 transMapEnsemblV5,151 transMapEnsemblV5,644 transMapEstV5,106 transMapEstV5,120 transMapEstV5,613 transMapRefSeqV5,106 transMapRefSeqV5,120 transMapRefSeqV5,613 transMapRnaV5,106 transMapRnaV5,120 transMapRnaV5,613 transMapV5,212 transMapV5,226 transMapV5,719 uniprot,1795 xenoMrna,86 hg.conf refSeqComposite,1640 hg19 refSeqComposite,574 uniprot,847 uniprot,860 hg38 HLTOGAannotvHg38v1,3 HLTOGAannotvHg38v1,8 HLTOGAannotvHg38v1,54 chainHg38,7 chainHg38,69 chainHg38,309 chainNetHg38,8 chainNetHg38,72 chainNetHg38,312 chainNetHg38Viewchain,6 chainNetHg38Viewnet,6 netHg38,7 netHg38,69 netHg38,309 refSeqComposite,518 refSeqComposite,576 uniprot,700 uniprot,843 uniprot,1177 uniprot,1367 uniprot,1909 hgdownload.soe.ucsc.edu cpgIslandExt,576 cpgIslandExtUnmasked,579 cpgIslandSuper,576 refSeqComposite,1552 transMapEnsemblV5,663 transMapEstV5,632 transMapRefSeqV5,632 transMapRnaV5,632 transMapV5,738 uniprot,1814 uniprot,1906 uniprot,1916 hgmd refSeqComposite,550 hgvs refSeqComposite,903 refSeqComposite,916 refSeqComposite,955 refSeqComposite,984 refSeqComposite,1043 refSeqComposite,1070 refSeqComposite,1074 refSeqComposite,1094 hiatt refSeqComposite,1754 xenoRefGene,324 hidden augustusGene,324 uniprot,182 uniprot,223 hide refSeqComposite,175 uniprot,659 uniprot,667 xenoRefGene,192 hierarchy chainHg38,824 chainMm10,824 chainNetHg38,827 chainNetMm10,827 chainNetTarSyr2,827 chainTarSyr2,824 netHg38,824 netMm10,824 netTarSyr2,824 high gc5BaseBw,29 transMapV5,119 higher chainHg38,856 chainMm10,856 chainNetHg38,859 chainNetMm10,859 chainNetTarSyr2,859 chainTarSyr2,856 cpgIslandExt,157 cpgIslandExtUnmasked,160 cpgIslandSuper,157 netHg38,856 netMm10,856 netTarSyr2,856 rmsk,230 transMapV5,147 higher-level chainHg38,873 chainMm10,873 chainNetHg38,876 chainNetMm10,876 chainNetTarSyr2,876 chainTarSyr2,873 netHg38,873 netMm10,873 netTarSyr2,873 higher-scoring chainHg38,817 chainHg38,836 chainMm10,817 chainMm10,836 chainNetHg38,820 chainNetHg38,839 chainNetMm10,820 chainNetMm10,839 chainNetTarSyr2,820 chainNetTarSyr2,839 chainTarSyr2,817 chainTarSyr2,836 netHg38,817 netHg38,836 netMm10,817 netMm10,836 netTarSyr2,817 netTarSyr2,836 highest mrna,412 refSeqComposite,1261 uniprot,948 uniprot,1113 xenoMrna,485 xenoRefGene,251 highest-scoring chainHg38,396 chainHg38,783 chainMm10,396 chainMm10,783 chainNetHg38,399 chainNetHg38,786 chainNetMm10,399 chainNetMm10,786 chainNetTarSyr2,399 chainNetTarSyr2,786 chainTarSyr2,396 chainTarSyr2,783 netHg38,396 netHg38,783 netMm10,396 netMm10,783 netTarSyr2,396 netTarSyr2,783 highlight gc5BaseBw,49 mrna,282 xenoMrna,356 highlighted mrna,252 mrna,270 uniprot,580 xenoMrna,326 xenoMrna,344 highly microsat,40 hilgers HLTOGAannotvHg38v1,352 hiller HLTOGAannotvHg38v1,322 hillerlab HLTOGAannotvHg38v1,332 hillier cpgIslandExt,601 cpgIslandExtUnmasked,604 cpgIslandSuper,601 hinrichs chainHg38,1052 chainMm10,1052 chainNetHg38,1055 chainNetMm10,1055 chainNetTarSyr2,1055 chainTarSyr2,1052 netHg38,1052 netMm10,1052 netTarSyr2,1052 hiram gc5BaseBw,82 ucscToINSDC,51 ucscToRefSeq,45 his chainHg38,950 chainMm10,950 chainNetHg38,953 chainNetMm10,953 chainNetTarSyr2,953 chainTarSyr2,950 netHg38,950 netMm10,950 netTarSyr2,950 homology-based HLTOGAannotvHg38v1,26 honeybee1 augustusGene,217 horizontal nestedRepeats,130 nestedRepeats,150 hou chainHg38,929 chainMm10,929 chainNetHg38,932 chainNetMm10,932 chainNetTarSyr2,932 chainTarSyr2,929 netHg38,929 netMm10,929 netTarSyr2,929 housekeeping cpgIslandExt,22 cpgIslandExtUnmasked,25 cpgIslandSuper,22 how chainHg38,884 chainHg38,901 chainMm10,884 chainMm10,901 chainNetHg38,887 chainNetHg38,904 chainNetMm10,887 chainNetMm10,904 chainNetTarSyr2,887 chainNetTarSyr2,904 chainTarSyr2,884 chainTarSyr2,901 netHg38,884 netHg38,901 netMm10,884 netMm10,901 netTarSyr2,884 netTarSyr2,901 refSeqComposite,97 rmsk,121 however cpgIslandExt,96 cpgIslandExtUnmasked,99 cpgIslandSuper,96 transMapEnsemblV5,488 transMapEstV5,457 transMapRefSeqV5,457 transMapRnaV5,457 transMapV5,563 hox refSeqComposite,415 http cpgIslandExt,575 cpgIslandExtUnmasked,578 cpgIslandSuper,575 nestedRepeats,332 refSeqComposite,1551 rmsk,355 transMapEnsemblV5,662 transMapEstV5,631 transMapRefSeqV5,631 transMapRnaV5,631 transMapV5,737 uniprot,1813 https uniprot,1905 uniprot,1915 hub uniprot,711 uniprot,1672 uniprot,1679 hubbard ensGene,44 ensGene,168 hubley nestedRepeats,308 nestedRepeats,326 rmsk,331 rmsk,349 hum uniprot,2043 human HLTOGAannotvHg38v1,7 HLTOGAannotvHg38v1,53 augustusGene,205 augustusGene,210 augustusGene,276 chainHg38,1 chainHg38,3 chainHg38,65 chainHg38,97 chainHg38,150 chainHg38,270 chainHg38,297 chainHg38,578 chainHg38,627 chainHg38,1069 chainMm10,1069 chainNetHg38,1 chainNetHg38,4 chainNetHg38,68 chainNetHg38,100 chainNetHg38,153 chainNetHg38,273 chainNetHg38,300 chainNetHg38,581 chainNetHg38,630 chainNetHg38,1072 chainNetHg38Viewchain,2 chainNetHg38Viewnet,2 chainNetMm10,1072 chainNetTarSyr2,1072 chainTarSyr2,1069 genscan,217 nestedRepeats,404 netHg38,1 netHg38,3 netHg38,65 netHg38,97 netHg38,150 netHg38,270 netHg38,297 netHg38,578 netHg38,627 netHg38,1069 netMm10,1069 netTarSyr2,1069 refSeqComposite,246 refSeqComposite,298 refSeqComposite,561 refSeqComposite,572 refSeqComposite,1076 rmsk,427 transMapEnsemblV5,42 transMapEnsemblV5,365 transMapEnsemblV5,474 transMapEnsemblV5,741 transMapEnsemblV5,809 transMapEstV5,334 transMapEstV5,443 transMapEstV5,710 transMapEstV5,778 transMapRefSeqV5,334 transMapRefSeqV5,443 transMapRefSeqV5,710 transMapRefSeqV5,778 transMapRnaV5,334 transMapRnaV5,443 transMapRnaV5,710 transMapRnaV5,778 transMapV5,105 transMapV5,134 transMapV5,440 transMapV5,549 transMapV5,816 transMapV5,884 uniprot,699 uniprot,940 uniprot,2040 human-mouse chainHg38,1104 chainMm10,1104 chainNetHg38,1107 chainNetMm10,1107 chainNetTarSyr2,1107 chainTarSyr2,1104 netHg38,1104 netMm10,1104 netTarSyr2,1104 i mrna,471 mrna,495 xenoMrna,545 xenoMrna,569 icon refSeqComposite,754 id nestedRepeats,10 nestedRepeats,106 refSeqComposite,1133 uniprot,1026 uniprot,1051 uniprot,1060 uniprot,1282 identical uniprot,1106 uniprot,1144 uniprot,1147 identified chainHg38,945 chainMm10,945 chainNetHg38,948 chainNetMm10,948 chainNetTarSyr2,948 chainTarSyr2,945 netHg38,945 netMm10,945 netTarSyr2,945 refSeqComposite,1265 transMapEnsemblV5,515 transMapEstV5,484 transMapRefSeqV5,484 transMapRnaV5,484 transMapV5,590 xenoRefGene,255 identifier refSeqComposite,785 refSeqComposite,804 transMapEnsemblV5,486 transMapEstV5,455 transMapRefSeqV5,455 transMapRnaV5,455 transMapV5,561 identifiers transMapEnsemblV5,387 transMapEnsemblV5,446 transMapEnsemblV5,464 transMapEstV5,356 transMapEstV5,415 transMapEstV5,433 transMapRefSeqV5,356 transMapRefSeqV5,415 transMapRefSeqV5,433 transMapRnaV5,356 transMapRnaV5,415 transMapRnaV5,433 transMapV5,462 transMapV5,521 transMapV5,539 ucscToRefSeq,19 identifying cpgIslandExt,249 cpgIslandExtUnmasked,252 cpgIslandSuper,249 identity microsat,71 mrna,414 mrna,422 mrna,434 nestedRepeats,187 nestedRepeats,222 refSeqComposite,1263 refSeqComposite,1271 refSeqComposite,1283 xenoMrna,487 xenoMrna,496 xenoMrna,508 xenoRefGene,253 xenoRefGene,261 xenoRefGene,273 ideogram cytoBandIdeo,3 cytoBandIdeo,4 ids uniprot,1292 if gap,77 mrna,225 mrna,237 mrna,253 mrna,289 mrna,306 nestedRepeats,137 transMapEnsemblV5,246 transMapEstV5,215 transMapRefSeqV5,215 transMapRnaV5,215 transMapV5,321 uniprot,602 uniprot,688 uniprot,1030 uniprot,1077 uniprot,1230 uniprot,1261 uniprot,1323 uniprot,1442 xenoMrna,299 xenoMrna,311 xenoMrna,327 xenoMrna,363 xenoMrna,380 xenoRefGene,205 ignored refSeqComposite,1456 uniprot,1426 ii215-25 augustusGene,338 immediately cpgIslandExt,48 cpgIslandExtUnmasked,51 cpgIslandSuper,48 imperfect simpleRepeat,19 implements HLTOGAannotvHg38v1,73 important uniprot,900 improve augustusGene,302 transMapEnsemblV5,773 transMapEstV5,742 transMapRefSeqV5,742 transMapRnaV5,742 transMapV5,848 improved chainHg38,1018 chainMm10,1018 chainNetHg38,1021 chainNetMm10,1021 chainNetTarSyr2,1021 chainTarSyr2,1018 netHg38,1018 netMm10,1018 netTarSyr2,1018 in HLTOGAannotvHg38v1,119 HLTOGAannotvHg38v1,124 HLTOGAannotvHg38v1,137 HLTOGAannotvHg38v1,173 HLTOGAannotvHg38v1,220 HLTOGAannotvHg38v1,242 augustusGene,101 chainHg38,31 chainHg38,95 chainHg38,116 chainHg38,148 chainHg38,155 chainHg38,170 chainHg38,189 chainHg38,192 chainHg38,232 chainHg38,253 chainHg38,300 chainHg38,333 chainHg38,363 chainHg38,375 chainHg38,384 chainHg38,402 chainHg38,407 chainHg38,416 chainHg38,428 chainHg38,442 chainHg38,484 chainHg38,501 chainHg38,532 chainHg38,550 chainHg38,564 chainHg38,600 chainHg38,697 chainHg38,785 chainHg38,826 chainHg38,834 chainHg38,850 chainHg38,883 chainHg38,895 chainHg38,1065 chainMm10,31 chainMm10,95 chainMm10,116 chainMm10,148 chainMm10,155 chainMm10,170 chainMm10,189 chainMm10,192 chainMm10,232 chainMm10,253 chainMm10,300 chainMm10,333 chainMm10,363 chainMm10,375 chainMm10,384 chainMm10,402 chainMm10,407 chainMm10,416 chainMm10,428 chainMm10,442 chainMm10,484 chainMm10,501 chainMm10,532 chainMm10,550 chainMm10,564 chainMm10,600 chainMm10,697 chainMm10,785 chainMm10,826 chainMm10,834 chainMm10,850 chainMm10,883 chainMm10,895 chainMm10,1065 chainNetHg38,34 chainNetHg38,98 chainNetHg38,119 chainNetHg38,151 chainNetHg38,158 chainNetHg38,173 chainNetHg38,192 chainNetHg38,195 chainNetHg38,235 chainNetHg38,256 chainNetHg38,303 chainNetHg38,336 chainNetHg38,366 chainNetHg38,378 chainNetHg38,387 chainNetHg38,405 chainNetHg38,410 chainNetHg38,419 chainNetHg38,431 chainNetHg38,445 chainNetHg38,487 chainNetHg38,504 chainNetHg38,535 chainNetHg38,553 chainNetHg38,567 chainNetHg38,603 chainNetHg38,700 chainNetHg38,788 chainNetHg38,829 chainNetHg38,837 chainNetHg38,853 chainNetHg38,886 chainNetHg38,898 chainNetHg38,1068 chainNetMm10,34 chainNetMm10,98 chainNetMm10,119 chainNetMm10,151 chainNetMm10,158 chainNetMm10,173 chainNetMm10,192 chainNetMm10,195 chainNetMm10,235 chainNetMm10,256 chainNetMm10,303 chainNetMm10,336 chainNetMm10,366 chainNetMm10,378 chainNetMm10,387 chainNetMm10,405 chainNetMm10,410 chainNetMm10,419 chainNetMm10,431 chainNetMm10,445 chainNetMm10,487 chainNetMm10,504 chainNetMm10,535 chainNetMm10,553 chainNetMm10,567 chainNetMm10,603 chainNetMm10,700 chainNetMm10,788 chainNetMm10,829 chainNetMm10,837 chainNetMm10,853 chainNetMm10,886 chainNetMm10,898 chainNetMm10,1068 chainNetTarSyr2,34 chainNetTarSyr2,98 chainNetTarSyr2,119 chainNetTarSyr2,151 chainNetTarSyr2,158 chainNetTarSyr2,173 chainNetTarSyr2,192 chainNetTarSyr2,195 chainNetTarSyr2,235 chainNetTarSyr2,256 chainNetTarSyr2,303 chainNetTarSyr2,336 chainNetTarSyr2,366 chainNetTarSyr2,378 chainNetTarSyr2,387 chainNetTarSyr2,405 chainNetTarSyr2,410 chainNetTarSyr2,419 chainNetTarSyr2,431 chainNetTarSyr2,445 chainNetTarSyr2,487 chainNetTarSyr2,504 chainNetTarSyr2,535 chainNetTarSyr2,553 chainNetTarSyr2,567 chainNetTarSyr2,603 chainNetTarSyr2,700 chainNetTarSyr2,788 chainNetTarSyr2,829 chainNetTarSyr2,837 chainNetTarSyr2,853 chainNetTarSyr2,886 chainNetTarSyr2,898 chainNetTarSyr2,1068 chainTarSyr2,31 chainTarSyr2,95 chainTarSyr2,116 chainTarSyr2,148 chainTarSyr2,155 chainTarSyr2,170 chainTarSyr2,189 chainTarSyr2,192 chainTarSyr2,232 chainTarSyr2,253 chainTarSyr2,300 chainTarSyr2,333 chainTarSyr2,363 chainTarSyr2,375 chainTarSyr2,384 chainTarSyr2,402 chainTarSyr2,407 chainTarSyr2,416 chainTarSyr2,428 chainTarSyr2,442 chainTarSyr2,484 chainTarSyr2,501 chainTarSyr2,532 chainTarSyr2,550 chainTarSyr2,564 chainTarSyr2,600 chainTarSyr2,697 chainTarSyr2,785 chainTarSyr2,826 chainTarSyr2,834 chainTarSyr2,850 chainTarSyr2,883 chainTarSyr2,895 chainTarSyr2,1065 cpgIslandExt,24 cpgIslandExt,58 cpgIslandExt,64 cpgIslandExt,87 cpgIslandExt,180 cpgIslandExt,189 cpgIslandExt,214 cpgIslandExt,297 cpgIslandExt,341 cpgIslandExt,375 cpgIslandExt,610 cpgIslandExtUnmasked,27 cpgIslandExtUnmasked,61 cpgIslandExtUnmasked,67 cpgIslandExtUnmasked,90 cpgIslandExtUnmasked,183 cpgIslandExtUnmasked,192 cpgIslandExtUnmasked,217 cpgIslandExtUnmasked,300 cpgIslandExtUnmasked,344 cpgIslandExtUnmasked,378 cpgIslandExtUnmasked,613 cpgIslandSuper,24 cpgIslandSuper,58 cpgIslandSuper,64 cpgIslandSuper,87 cpgIslandSuper,180 cpgIslandSuper,189 cpgIslandSuper,214 cpgIslandSuper,297 cpgIslandSuper,341 cpgIslandSuper,375 cpgIslandSuper,610 ensGene,37 ensGene,50 ensGene,83 ensGene,90 ensGene,95 gap,13 gap,26 gap,44 gap,74 gc5BaseBw,5 gc5BaseBw,26 gc5BaseBw,43 genscan,101 genscan,150 genscan,162 genscan,165 genscan,184 genscan,188 genscan,198 genscan,216 gold,15 gold,28 gold,67 gold,128 gold,139 gold,147 microsat,42 microsat,49 mrna,22 mrna,41 mrna,97 mrna,118 mrna,141 mrna,151 mrna,169 mrna,222 mrna,405 nestedRepeats,61 nestedRepeats,64 nestedRepeats,75 nestedRepeats,115 nestedRepeats,156 nestedRepeats,167 nestedRepeats,241 nestedRepeats,339 nestedRepeats,367 nestedRepeats,381 nestedRepeats,402 netHg38,31 netHg38,95 netHg38,116 netHg38,148 netHg38,155 netHg38,170 netHg38,189 netHg38,192 netHg38,232 netHg38,253 netHg38,300 netHg38,333 netHg38,363 netHg38,375 netHg38,384 netHg38,402 netHg38,407 netHg38,416 netHg38,428 netHg38,442 netHg38,484 netHg38,501 netHg38,532 netHg38,550 netHg38,564 netHg38,600 netHg38,697 netHg38,785 netHg38,826 netHg38,834 netHg38,850 netHg38,883 netHg38,895 netHg38,1065 netMm10,31 netMm10,95 netMm10,116 netMm10,148 netMm10,155 netMm10,170 netMm10,189 netMm10,192 netMm10,232 netMm10,253 netMm10,300 netMm10,333 netMm10,363 netMm10,375 netMm10,384 netMm10,402 netMm10,407 netMm10,416 netMm10,428 netMm10,442 netMm10,484 netMm10,501 netMm10,532 netMm10,550 netMm10,564 netMm10,600 netMm10,697 netMm10,785 netMm10,826 netMm10,834 netMm10,850 netMm10,883 netMm10,895 netMm10,1065 netTarSyr2,31 netTarSyr2,95 netTarSyr2,116 netTarSyr2,148 netTarSyr2,155 netTarSyr2,170 netTarSyr2,189 netTarSyr2,192 netTarSyr2,232 netTarSyr2,253 netTarSyr2,300 netTarSyr2,333 netTarSyr2,363 netTarSyr2,375 netTarSyr2,384 netTarSyr2,402 netTarSyr2,407 netTarSyr2,416 netTarSyr2,428 netTarSyr2,442 netTarSyr2,484 netTarSyr2,501 netTarSyr2,532 netTarSyr2,550 netTarSyr2,564 netTarSyr2,600 netTarSyr2,697 netTarSyr2,785 netTarSyr2,826 netTarSyr2,834 netTarSyr2,850 netTarSyr2,883 netTarSyr2,895 netTarSyr2,1065 refSeqComposite,62 refSeqComposite,278 refSeqComposite,397 refSeqComposite,760 refSeqComposite,992 refSeqComposite,1039 refSeqComposite,1066 refSeqComposite,1143 refSeqComposite,1169 refSeqComposite,1184 refSeqComposite,1254 refSeqComposite,1301 refSeqComposite,1345 refSeqComposite,1360 refSeqComposite,1369 refSeqComposite,1379 refSeqComposite,1389 refSeqComposite,1448 refSeqComposite,1457 refSeqComposite,1472 refSeqComposite,1480 refSeqComposite,1540 refSeqComposite,1625 refSeqComposite,1662 refSeqComposite,1668 rmsk,45 rmsk,63 rmsk,97 rmsk,100 rmsk,128 rmsk,139 rmsk,209 rmsk,270 rmsk,317 rmsk,362 rmsk,390 rmsk,404 rmsk,425 transMapEnsemblV5,33 transMapEnsemblV5,82 transMapEnsemblV5,89 transMapEnsemblV5,161 transMapEnsemblV5,338 transMapEnsemblV5,362 transMapEnsemblV5,370 transMapEnsemblV5,405 transMapEnsemblV5,415 transMapEnsemblV5,449 transMapEnsemblV5,495 transMapEnsemblV5,545 transMapEnsemblV5,587 transMapEstV5,31 transMapEstV5,51 transMapEstV5,58 transMapEstV5,130 transMapEstV5,307 transMapEstV5,331 transMapEstV5,339 transMapEstV5,374 transMapEstV5,384 transMapEstV5,418 transMapEstV5,464 transMapEstV5,514 transMapEstV5,556 transMapRefSeqV5,31 transMapRefSeqV5,51 transMapRefSeqV5,58 transMapRefSeqV5,130 transMapRefSeqV5,307 transMapRefSeqV5,331 transMapRefSeqV5,339 transMapRefSeqV5,374 transMapRefSeqV5,384 transMapRefSeqV5,418 transMapRefSeqV5,464 transMapRefSeqV5,514 transMapRefSeqV5,556 transMapRnaV5,31 transMapRnaV5,51 transMapRnaV5,58 transMapRnaV5,130 transMapRnaV5,307 transMapRnaV5,331 transMapRnaV5,339 transMapRnaV5,374 transMapRnaV5,384 transMapRnaV5,418 transMapRnaV5,464 transMapRnaV5,514 transMapRnaV5,556 transMapV5,30 transMapV5,52 transMapV5,59 transMapV5,77 transMapV5,236 transMapV5,413 transMapV5,437 transMapV5,445 transMapV5,480 transMapV5,490 transMapV5,524 transMapV5,570 transMapV5,620 transMapV5,662 uniprot,67 uniprot,148 uniprot,161 uniprot,177 uniprot,242 uniprot,291 uniprot,313 uniprot,427 uniprot,505 uniprot,509 uniprot,570 uniprot,581 uniprot,586 uniprot,591 uniprot,737 uniprot,755 uniprot,854 uniprot,870 uniprot,882 uniprot,1066 uniprot,1132 uniprot,1151 uniprot,1171 uniprot,1190 uniprot,1199 uniprot,1252 uniprot,1258 uniprot,1272 uniprot,1466 uniprot,1637 uniprot,1663 uniprot,1734 uniprot,1752 uniprot,1849 uniprot,1864 windowmaskerSdust,27 xenoMrna,23 xenoMrna,45 xenoMrna,68 xenoMrna,171 xenoMrna,192 xenoMrna,215 xenoMrna,225 xenoMrna,243 xenoMrna,296 xenoMrna,478 xenoRefGene,244 inactivating HLTOGAannotvHg38v1,185 HLTOGAannotvHg38v1,232 HLTOGAannotvHg38v1,240 HLTOGAannotvHg38v1,275 HLTOGAannotvHg38v1,305 include mrna,79 mrna,284 mrna,308 refSeqComposite,188 rmsk,159 rmsk,172 xenoMrna,153 xenoMrna,358 xenoMrna,382 included augustusGene,160 cpgIslandExt,306 cpgIslandExtUnmasked,309 cpgIslandSuper,306 windowmaskerSdust,26 includes refSeqComposite,217 refSeqComposite,263 refSeqComposite,347 refSeqComposite,652 rmsk,198 uniprot,1587 including refSeqComposite,799 rmsk,188 uniprot,1700 inclusion refSeqComposite,396 inconsistency refSeqComposite,877 incorporate refSeqComposite,664 incorrect uniprot,1361 indels microsat,74 independently refSeqComposite,294 indexing refSeqComposite,1467 indicate chainHg38,139 chainHg38,247 chainMm10,139 chainMm10,247 chainNetHg38,142 chainNetHg38,250 chainNetMm10,142 chainNetMm10,250 chainNetTarSyr2,142 chainNetTarSyr2,250 chainTarSyr2,139 chainTarSyr2,247 mrna,52 nestedRepeats,153 netHg38,139 netHg38,247 netMm10,139 netMm10,247 netTarSyr2,139 netTarSyr2,247 xenoMrna,56 indicates refSeqComposite,609 xenoMrna,73 xenoMrna,95 xenoRefGene,60 individual chainHg38,244 chainHg38,499 chainMm10,244 chainMm10,499 chainNetHg38,247 chainNetHg38,502 chainNetMm10,247 chainNetMm10,502 chainNetTarSyr2,247 chainNetTarSyr2,502 chainTarSyr2,244 chainTarSyr2,499 netHg38,244 netHg38,499 netMm10,244 netMm10,499 netTarSyr2,244 netTarSyr2,499 refSeqComposite,680 refSeqComposite,705 refSeqComposite,749 refSeqComposite,1495 transMapEnsemblV5,603 transMapEstV5,572 transMapRefSeqV5,572 transMapRnaV5,572 transMapV5,678 infer HLTOGAannotvHg38v1,19 inference HLTOGAannotvHg38v1,361 inferring HLTOGAannotvHg38v1,32 information HLTOGAannotvHg38v1,300 augustusGene,36 chainHg38,462 chainHg38,475 chainHg38,481 chainHg38,851 chainMm10,462 chainMm10,475 chainMm10,481 chainMm10,851 chainNetHg38,465 chainNetHg38,478 chainNetHg38,484 chainNetHg38,854 chainNetMm10,465 chainNetMm10,478 chainNetMm10,484 chainNetMm10,854 chainNetTarSyr2,465 chainNetTarSyr2,478 chainNetTarSyr2,484 chainNetTarSyr2,854 chainTarSyr2,462 chainTarSyr2,475 chainTarSyr2,481 chainTarSyr2,851 cpgIslandExt,542 cpgIslandExtUnmasked,545 cpgIslandSuper,542 ensGene,19 ensGene,159 gap,35 gc5BaseBw,55 genscan,51 genscan,126 gold,37 microsat,97 mrna,350 mrna,376 nestedRepeats,53 nestedRepeats,301 netHg38,462 netHg38,475 netHg38,481 netHg38,851 netMm10,462 netMm10,475 netMm10,481 netMm10,851 netTarSyr2,462 netTarSyr2,475 netTarSyr2,481 netTarSyr2,851 refSeqComposite,131 refSeqComposite,669 refSeqComposite,853 refSeqComposite,1188 refSeqComposite,1384 refSeqComposite,1388 rmsk,89 rmsk,324 simpleRepeat,58 transMapEnsemblV5,132 transMapEnsemblV5,149 transMapEnsemblV5,569 transMapEstV5,101 transMapEstV5,118 transMapEstV5,538 transMapRefSeqV5,101 transMapRefSeqV5,118 transMapRefSeqV5,538 transMapRnaV5,101 transMapRnaV5,118 transMapRnaV5,538 transMapV5,207 transMapV5,224 transMapV5,644 uniprot,678 uniprot,1842 uniprot,2038 xenoMrna,63 xenoMrna,424 xenoMrna,450 xenoRefGene,177 initial refSeqComposite,683 initiate rmsk,316 initio augustusGene,4 augustusGene,17 input HLTOGAannotvHg38v1,43 uniprot,1952 windowmaskerSdust,61 windowmaskerSdust,70 insdc ucscToINSDC,1 ucscToINSDC,4 ucscToINSDC,32 inserted chainHg38,575 chainHg38,907 chainMm10,575 chainMm10,907 chainNetHg38,578 chainNetHg38,910 chainNetMm10,578 chainNetMm10,910 chainNetTarSyr2,578 chainNetTarSyr2,910 chainTarSyr2,575 chainTarSyr2,907 netHg38,575 netHg38,907 netMm10,575 netMm10,907 netTarSyr2,575 netTarSyr2,907 insertion chainHg38,154 chainMm10,154 chainNetHg38,157 chainNetMm10,157 chainNetTarSyr2,157 chainTarSyr2,154 mrna,381 netHg38,154 netMm10,154 netTarSyr2,154 rmsk,223 xenoMrna,455 insertions nestedRepeats,86 nestedRepeats,92 refSeqComposite,949 inside uniprot,560 inspection uniprot,1653 instead refSeqComposite,786 xenoRefGene,120 institute nestedRepeats,55 rmsk,91 instructions ensGene,117 transMapEnsemblV5,634 transMapEstV5,603 transMapRefSeqV5,603 transMapRnaV5,603 transMapV5,709 uniprot,1785 intact HLTOGAannotvHg38v1,38 HLTOGAannotvHg38v1,143 HLTOGAannotvHg38v1,166 integrates HLTOGAannotvHg38v1,29 integrating HLTOGAannotvHg38v1,356 integrator cpgIslandExt,526 cpgIslandExtUnmasked,529 cpgIslandSuper,526 ensGene,71 refSeqComposite,1317 transMapEnsemblV5,537 transMapEstV5,506 transMapRefSeqV5,506 transMapRnaV5,506 transMapV5,612 uniprot,1725 interactions uniprot,316 interactively cpgIslandExt,515 cpgIslandExtUnmasked,518 cpgIslandSuper,515 ensGene,63 refSeqComposite,1308 transMapEnsemblV5,529 transMapEstV5,498 transMapRefSeqV5,498 transMapRnaV5,498 transMapV5,604 uniprot,1717 interest unipInterest,1 unipInterest,5 uniprot,299 intergenic HLTOGAannotvHg38v1,84 genscan,47 international mrna,456 transMapEnsemblV5,695 transMapEstV5,664 transMapRefSeqV5,664 transMapRnaV5,664 transMapV5,770 ucscToINSDC,5 ucscToINSDC,27 xenoMrna,530 internet nestedRepeats,279 interrupted nestedRepeats,1 nestedRepeats,5 nestedRepeats,21 nestedRepeats,90 nestedRepeats,121 interspersed nestedRepeats,36 nestedRepeats,373 nestedRepeats,400 rmsk,26 rmsk,154 rmsk,162 rmsk,396 rmsk,423 intervals windowmaskerSdust,4 into chainHg38,606 chainHg38,618 chainHg38,635 chainHg38,810 chainMm10,606 chainMm10,618 chainMm10,635 chainMm10,810 chainNetHg38,609 chainNetHg38,621 chainNetHg38,638 chainNetHg38,813 chainNetMm10,609 chainNetMm10,621 chainNetMm10,638 chainNetMm10,813 chainNetTarSyr2,609 chainNetTarSyr2,621 chainNetTarSyr2,638 chainNetTarSyr2,813 chainTarSyr2,606 chainTarSyr2,618 chainTarSyr2,635 chainTarSyr2,810 cpgIslandExt,105 cpgIslandExtUnmasked,108 cpgIslandSuper,105 mrna,201 netHg38,606 netHg38,618 netHg38,635 netHg38,810 netMm10,606 netMm10,618 netMm10,635 netMm10,810 netTarSyr2,606 netTarSyr2,618 netTarSyr2,635 netTarSyr2,810 uniprot,57 windowmaskerSdust,80 xenoMrna,275 intron augustusGene,88 augustusGene,330 intronic HLTOGAannotvHg38v1,82 introns chainHg38,56 chainMm10,56 chainNetHg38,59 chainNetMm10,59 chainNetTarSyr2,59 chainTarSyr2,56 genscan,45 netHg38,56 netMm10,56 netTarSyr2,56 refSeqComposite,940 refSeqComposite,1031 inv chainHg38,537 chainMm10,537 chainNetHg38,540 chainNetMm10,540 chainNetTarSyr2,540 chainTarSyr2,537 netHg38,537 netMm10,537 netTarSyr2,537 inversions chainHg38,112 chainHg38,177 chainMm10,112 chainMm10,177 chainNetHg38,115 chainNetHg38,180 chainNetMm10,115 chainNetMm10,180 chainNetTarSyr2,115 chainNetTarSyr2,180 chainTarSyr2,112 chainTarSyr2,177 netHg38,112 netHg38,177 netMm10,112 netMm10,177 netTarSyr2,112 netTarSyr2,177 invertebrate xenoMrna,21 inverted chainHg38,869 chainMm10,869 chainNetHg38,872 chainNetMm10,872 chainNetTarSyr2,872 chainTarSyr2,869 netHg38,869 netMm10,869 netTarSyr2,869 invisible refSeqComposite,1038 refSeqComposite,1065 involve chainHg38,167 chainMm10,167 chainNetHg38,170 chainNetMm10,170 chainNetTarSyr2,170 chainTarSyr2,167 netHg38,167 netMm10,167 netTarSyr2,167 is HLTOGAannotvHg38v1,24 HLTOGAannotvHg38v1,104 HLTOGAannotvHg38v1,135 HLTOGAannotvHg38v1,151 HLTOGAannotvHg38v1,171 HLTOGAannotvHg38v1,197 HLTOGAannotvHg38v1,218 HLTOGAannotvHg38v1,238 HLTOGAannotvHg38v1,251 HLTOGAannotvHg38v1,281 HLTOGAannotvHg38v1,287 HLTOGAannotvHg38v1,328 chainHg38,283 chainHg38,303 chainHg38,482 chainMm10,283 chainMm10,303 chainMm10,482 chainNetHg38,286 chainNetHg38,306 chainNetHg38,485 chainNetMm10,286 chainNetMm10,306 chainNetMm10,485 chainNetTarSyr2,286 chainNetTarSyr2,306 chainNetTarSyr2,485 chainTarSyr2,283 chainTarSyr2,303 chainTarSyr2,482 cpgIslandExt,56 cpgIslandExt,113 cpgIslandExt,121 cpgIslandExt,130 cpgIslandExt,160 cpgIslandExt,203 cpgIslandExt,321 cpgIslandExt,330 cpgIslandExt,335 cpgIslandExt,347 cpgIslandExt,368 cpgIslandExt,404 cpgIslandExt,494 cpgIslandExtUnmasked,59 cpgIslandExtUnmasked,116 cpgIslandExtUnmasked,124 cpgIslandExtUnmasked,133 cpgIslandExtUnmasked,163 cpgIslandExtUnmasked,206 cpgIslandExtUnmasked,324 cpgIslandExtUnmasked,333 cpgIslandExtUnmasked,338 cpgIslandExtUnmasked,350 cpgIslandExtUnmasked,371 cpgIslandExtUnmasked,407 cpgIslandExtUnmasked,497 cpgIslandSuper,56 cpgIslandSuper,113 cpgIslandSuper,121 cpgIslandSuper,130 cpgIslandSuper,160 cpgIslandSuper,203 cpgIslandSuper,321 cpgIslandSuper,330 cpgIslandSuper,335 cpgIslandSuper,347 cpgIslandSuper,368 cpgIslandSuper,404 cpgIslandSuper,494 gap,47 gap,92 gap,99 gap,107 gc5BaseBw,32 gold,46 gold,120 gold,126 microsat,88 mrna,241 mrna,257 mrna,293 mrna,310 nestedRepeats,59 nestedRepeats,123 nestedRepeats,198 nestedRepeats,219 nestedRepeats,337 netHg38,283 netHg38,303 netHg38,482 netMm10,283 netMm10,303 netMm10,482 netTarSyr2,283 netTarSyr2,303 netTarSyr2,482 refSeqComposite,147 refSeqComposite,243 refSeqComposite,317 refSeqComposite,537 refSeqComposite,567 refSeqComposite,578 refSeqComposite,714 refSeqComposite,1059 refSeqComposite,1202 refSeqComposite,1217 refSeqComposite,1434 refSeqComposite,1440 rmsk,95 rmsk,360 simpleRepeat,28 transMapEnsemblV5,39 transMapEnsemblV5,277 transMapEnsemblV5,421 transMapEnsemblV5,425 transMapEnsemblV5,437 transMapEnsemblV5,483 transMapEstV5,246 transMapEstV5,390 transMapEstV5,394 transMapEstV5,406 transMapEstV5,452 transMapRefSeqV5,246 transMapRefSeqV5,390 transMapRefSeqV5,394 transMapRefSeqV5,406 transMapRefSeqV5,452 transMapRnaV5,246 transMapRnaV5,390 transMapRnaV5,394 transMapRnaV5,406 transMapRnaV5,452 transMapV5,352 transMapV5,496 transMapV5,500 transMapV5,512 transMapV5,558 uniprot,159 uniprot,222 uniprot,417 uniprot,626 uniprot,707 uniprot,839 uniprot,911 uniprot,958 uniprot,972 uniprot,1052 uniprot,1081 uniprot,1209 uniprot,1245 uniprot,1256 uniprot,1264 uniprot,1283 uniprot,1334 uniprot,1390 uniprot,1564 uniprot,1578 uniprot,1603 uniprot,1630 uniprot,1732 windowmaskerSdust,25 windowmaskerSdust,39 xenoMrna,67 xenoMrna,121 xenoMrna,127 xenoMrna,315 xenoMrna,331 xenoMrna,367 xenoMrna,384 island cpgIslandExt,343 cpgIslandExtUnmasked,346 cpgIslandSuper,343 islands cpgIslandExt,2 cpgIslandExt,4 cpgIslandExt,5 cpgIslandExt,16 cpgIslandExt,27 cpgIslandExt,148 cpgIslandExt,177 cpgIslandExt,226 cpgIslandExt,320 cpgIslandExt,507 cpgIslandExt,609 cpgIslandExtUnmasked,4 cpgIslandExtUnmasked,8 cpgIslandExtUnmasked,19 cpgIslandExtUnmasked,30 cpgIslandExtUnmasked,151 cpgIslandExtUnmasked,180 cpgIslandExtUnmasked,229 cpgIslandExtUnmasked,323 cpgIslandExtUnmasked,510 cpgIslandExtUnmasked,612 cpgIslandSuper,2 cpgIslandSuper,4 cpgIslandSuper,5 cpgIslandSuper,16 cpgIslandSuper,27 cpgIslandSuper,148 cpgIslandSuper,177 cpgIslandSuper,226 cpgIslandSuper,320 cpgIslandSuper,507 cpgIslandSuper,609 isoform unipAliSwissprot,13 uniprot,157 uniprot,186 uniprot,671 isoforms unipAliSwissprot,17 uniprot,145 uniprot,164 issue mrna,486 mrna,512 refSeqComposite,1786 refSeqComposite,1820 uniprot,2004 xenoMrna,560 xenoMrna,586 xenoRefGene,356 xenoRefGene,390 it chainHg38,90 chainHg38,282 chainHg38,536 chainHg38,548 chainMm10,90 chainMm10,282 chainMm10,536 chainMm10,548 chainNetHg38,93 chainNetHg38,285 chainNetHg38,539 chainNetHg38,551 chainNetMm10,93 chainNetMm10,285 chainNetMm10,539 chainNetMm10,551 chainNetTarSyr2,93 chainNetTarSyr2,285 chainNetTarSyr2,539 chainNetTarSyr2,551 chainTarSyr2,90 chainTarSyr2,282 chainTarSyr2,536 chainTarSyr2,548 gap,98 genscan,143 netHg38,90 netHg38,282 netHg38,536 netHg38,548 netMm10,90 netMm10,282 netMm10,536 netMm10,548 netTarSyr2,90 netTarSyr2,282 netTarSyr2,536 netTarSyr2,548 refSeqComposite,577 refSeqComposite,1304 uniprot,228 uniprot,625 uniprot,1586 item nestedRepeats,197 refSeqComposite,717 xenoRefGene,77 items chainHg38,500 chainMm10,500 chainNetHg38,503 chainNetMm10,503 chainNetTarSyr2,503 chainTarSyr2,500 mrna,46 mrna,84 mrna,94 mrna,288 nestedRepeats,171 nestedRepeats,180 netHg38,500 netMm10,500 netTarSyr2,500 refSeqComposite,767 refSeqComposite,966 refSeqComposite,1667 xenoMrna,50 xenoMrna,158 xenoMrna,168 xenoMrna,362 xenoRefGene,104 its cpgIslandExt,509 cpgIslandExtUnmasked,512 cpgIslandSuper,509 nestedRepeats,204 uniprot,230 uniprot,762 uniprot,1316 uniprot,1348 itself uniprot,715 j cpgIslandExt,613 cpgIslandExtUnmasked,616 cpgIslandSuper,613 ensGene,183 genscan,220 mrna,475 mrna,499 nestedRepeats,341 refSeqComposite,1765 rmsk,364 transMapEnsemblV5,788 transMapEstV5,757 transMapRefSeqV5,757 transMapRnaV5,757 transMapV5,863 xenoMrna,549 xenoMrna,573 xenoRefGene,335 jan chainHg38,1111 chainMm10,1111 chainNetHg38,1114 chainNetMm10,1114 chainNetTarSyr2,1114 chainTarSyr2,1111 ensGene,199 microsat,129 mrna,483 mrna,508 netHg38,1111 netMm10,1111 netTarSyr2,1111 refSeqComposite,1783 refSeqComposite,1816 simpleRepeat,89 uniprot,2001 windowmaskerSdust,108 xenoMrna,557 xenoMrna,582 xenoRefGene,353 xenoRefGene,386 jebb HLTOGAannotvHg38v1,340 jim chainHg38,967 chainHg38,994 chainHg38,1012 chainMm10,967 chainMm10,994 chainMm10,1012 chainNetHg38,970 chainNetHg38,997 chainNetHg38,1015 chainNetMm10,970 chainNetMm10,997 chainNetMm10,1015 chainNetTarSyr2,970 chainNetTarSyr2,997 chainNetTarSyr2,1015 chainTarSyr2,967 chainTarSyr2,994 chainTarSyr2,1012 netHg38,967 netHg38,994 netHg38,1012 netMm10,967 netMm10,994 netMm10,1012 netTarSyr2,967 netTarSyr2,994 netTarSyr2,1012 joined chainHg38,124 chainMm10,124 chainNetHg38,127 chainNetMm10,127 chainNetTarSyr2,127 chainTarSyr2,124 nestedRepeats,7 nestedRepeats,18 nestedRepeats,103 nestedRepeats,128 netHg38,124 netMm10,124 netTarSyr2,124 journal nestedRepeats,349 rmsk,372 json refSeqComposite,1361 refSeqComposite,1365 jul cpgIslandExt,617 cpgIslandExtUnmasked,620 cpgIslandSuper,617 jurka nestedRepeats,62 nestedRepeats,340 rmsk,98 rmsk,363 jz transMapEnsemblV5,790 transMapEstV5,759 transMapRefSeqV5,759 transMapRnaV5,759 transMapV5,865 k augustusGene,268 mrna,469 xenoMrna,543 k1 cpgIslandExt,484 cpgIslandExtUnmasked,487 cpgIslandSuper,484 k2 cpgIslandExt,486 cpgIslandExtUnmasked,489 cpgIslandSuper,486 karlin genscan,148 genscan,209 karsch-mizrachi mrna,470 mrna,494 xenoMrna,544 xenoMrna,568 kasif genscan,193 kd refSeqComposite,1751 refSeqComposite,1793 xenoRefGene,321 xenoRefGene,363 kd-tree chainHg38,641 chainMm10,641 chainNetHg38,644 chainNetMm10,644 chainNetTarSyr2,644 chainTarSyr2,641 netHg38,641 netMm10,641 netTarSyr2,641 kd-trees chainHg38,659 chainMm10,659 chainNetHg38,662 chainNetMm10,662 chainNetTarSyr2,662 chainTarSyr2,659 netHg38,659 netMm10,659 netTarSyr2,659 keep cpgIslandExt,125 cpgIslandExtUnmasked,128 cpgIslandSuper,125 uniprot,1486 kent chainHg38,968 chainHg38,995 chainHg38,1013 chainHg38,1048 chainHg38,1090 chainMm10,968 chainMm10,995 chainMm10,1013 chainMm10,1048 chainMm10,1090 chainNetHg38,971 chainNetHg38,998 chainNetHg38,1016 chainNetHg38,1051 chainNetHg38,1093 chainNetMm10,971 chainNetMm10,998 chainNetMm10,1016 chainNetMm10,1051 chainNetMm10,1093 chainNetTarSyr2,971 chainNetTarSyr2,998 chainNetTarSyr2,1016 chainNetTarSyr2,1051 chainNetTarSyr2,1093 chainTarSyr2,968 chainTarSyr2,995 chainTarSyr2,1013 chainTarSyr2,1048 chainTarSyr2,1090 mrna,518 netHg38,968 netHg38,995 netHg38,1013 netHg38,1048 netHg38,1090 netMm10,968 netMm10,995 netMm10,1013 netMm10,1048 netMm10,1090 netTarSyr2,968 netTarSyr2,995 netTarSyr2,1013 netTarSyr2,1048 netTarSyr2,1090 refSeqComposite,1732 xenoMrna,592 xenoRefGene,303 kept mrna,440 refSeqComposite,1289 xenoMrna,514 xenoRefGene,279 kirilenko HLTOGAannotvHg38v1,334 km refSeqComposite,1769 xenoRefGene,339 known chainHg38,918 chainMm10,918 chainNetHg38,921 chainNetMm10,921 chainNetTarSyr2,921 chainTarSyr2,918 gold,122 netHg38,918 netMm10,918 netTarSyr2,918 refSeqComposite,505 xenoRefGene,15 kontopoulos HLTOGAannotvHg38v1,350 l HLTOGAannotvHg38v1,353 cpgIslandExt,600 cpgIslandExtUnmasked,603 cpgIslandSuper,600 ensGene,179 transMapEnsemblV5,722 transMapEstV5,691 transMapRefSeqV5,691 transMapRnaV5,691 transMapV5,797 lab HLTOGAannotvHg38v1,323 augustusGene,252 label genscan,98 refSeqComposite,764 refSeqComposite,776 refSeqComposite,812 xenoRefGene,101 xenoRefGene,113 xenoRefGene,136 labeled nestedRepeats,132 refSeqComposite,769 uniprot,457 xenoRefGene,106 labels nestedRepeats,161 refSeqComposite,718 refSeqComposite,798 xenoRefGene,78 landrum refSeqComposite,1766 xenoRefGene,336 langton transMapEnsemblV5,721 transMapEstV5,690 transMapRefSeqV5,690 transMapRnaV5,690 transMapV5,796 largely chainHg38,143 chainMm10,143 chainNetHg38,146 chainNetMm10,146 chainNetTarSyr2,146 chainTarSyr2,143 netHg38,143 netMm10,143 netTarSyr2,143 largest chainHg38,395 chainMm10,395 chainNetHg38,398 chainNetMm10,398 chainNetTarSyr2,398 chainTarSyr2,395 netHg38,395 netMm10,395 netTarSyr2,395 lastz chainHg38,593 chainHg38,767 chainHg38,916 chainMm10,593 chainMm10,767 chainMm10,916 chainNetHg38,596 chainNetHg38,770 chainNetHg38,919 chainNetMm10,596 chainNetMm10,770 chainNetMm10,919 chainNetTarSyr2,596 chainNetTarSyr2,770 chainNetTarSyr2,919 chainTarSyr2,593 chainTarSyr2,767 chainTarSyr2,916 netHg38,593 netHg38,767 netHg38,916 netMm10,593 netMm10,767 netMm10,916 netTarSyr2,593 netTarSyr2,767 netTarSyr2,916 transMapV5,46 lau transMapEnsemblV5,733 transMapEstV5,702 transMapRefSeqV5,702 transMapRnaV5,702 transMapV5,808 lavtoaxt chainHg38,611 chainMm10,611 chainNetHg38,614 chainNetMm10,614 chainNetTarSyr2,614 chainTarSyr2,611 netHg38,611 netMm10,611 netTarSyr2,611 learning HLTOGAannotvHg38v1,89 least microsat,29 microsat,78 mrna,431 refSeqComposite,1280 xenoMrna,505 xenoRefGene,270 lee uniprot,1955 left refSeqComposite,972 length augustusGene,82 cpgIslandExt,268 cpgIslandExt,360 cpgIslandExt,395 cpgIslandExtUnmasked,271 cpgIslandExtUnmasked,363 cpgIslandExtUnmasked,398 cpgIslandSuper,268 cpgIslandSuper,360 cpgIslandSuper,395 genscan,39 less refSeqComposite,1244 transMapEnsemblV5,375 transMapEstV5,344 transMapRefSeqV5,344 transMapRnaV5,344 transMapV5,450 uniprot,680 xenoRefGene,234 level chainHg38,390 chainHg38,424 chainHg38,429 chainHg38,436 chainHg38,494 chainHg38,521 chainHg38,534 chainHg38,566 chainMm10,390 chainMm10,424 chainMm10,429 chainMm10,436 chainMm10,494 chainMm10,521 chainMm10,534 chainMm10,566 chainNetHg38,393 chainNetHg38,427 chainNetHg38,432 chainNetHg38,439 chainNetHg38,497 chainNetHg38,524 chainNetHg38,537 chainNetHg38,569 chainNetMm10,393 chainNetMm10,427 chainNetMm10,432 chainNetMm10,439 chainNetMm10,497 chainNetMm10,524 chainNetMm10,537 chainNetMm10,569 chainNetTarSyr2,393 chainNetTarSyr2,427 chainNetTarSyr2,432 chainNetTarSyr2,439 chainNetTarSyr2,497 chainNetTarSyr2,524 chainNetTarSyr2,537 chainNetTarSyr2,569 chainTarSyr2,390 chainTarSyr2,424 chainTarSyr2,429 chainTarSyr2,436 chainTarSyr2,494 chainTarSyr2,521 chainTarSyr2,534 chainTarSyr2,566 mrna,423 netHg38,390 netHg38,424 netHg38,429 netHg38,436 netHg38,494 netHg38,521 netHg38,534 netHg38,566 netMm10,390 netMm10,424 netMm10,429 netMm10,436 netMm10,494 netMm10,521 netMm10,534 netMm10,566 netTarSyr2,390 netTarSyr2,424 netTarSyr2,429 netTarSyr2,436 netTarSyr2,494 netTarSyr2,521 netTarSyr2,534 netTarSyr2,566 refSeqComposite,611 refSeqComposite,631 refSeqComposite,1272 rmsk,205 xenoMrna,497 xenoRefGene,62 xenoRefGene,262 levels cpgIslandExt,158 cpgIslandExtUnmasked,161 cpgIslandSuper,158 libraries nestedRepeats,258 nestedRepeats,317 rmsk,340 library nestedRepeats,47 rmsk,83 lifted uniprot,1492 lifting uniprot,1843 liftover uniprot,887 uniprot,1878 uniprot,1897 uniprot,1920 uniprot,1924 uniprot,1932 light cpgIslandExt,9 cpgIslandExtUnmasked,12 cpgIslandSuper,9 refSeqComposite,620 unipAliSwissprot,14 uniprot,506 uniprot,592 xenoRefGene,71 light-blue uniprot,178 lighter rmsk,237 like chainHg38,47 chainHg38,55 chainMm10,47 chainMm10,55 chainNetHg38,50 chainNetHg38,58 chainNetMm10,50 chainNetMm10,58 chainNetTarSyr2,50 chainNetTarSyr2,58 chainTarSyr2,47 chainTarSyr2,55 ensGene,148 netHg38,47 netHg38,55 netMm10,47 netMm10,55 netTarSyr2,47 netTarSyr2,55 refSeqComposite,83 refSeqComposite,1615 uniprot,1541 likely HLTOGAannotvHg38v1,160 augustusGene,111 microsat,17 refSeqComposite,948 transMapV5,94 line chainHg38,472 chainMm10,472 chainNetHg38,475 chainNetMm10,475 chainNetTarSyr2,475 chainTarSyr2,472 gap,106 gold,125 nestedRepeats,151 netHg38,472 netMm10,472 netTarSyr2,472 refSeqComposite,1003 refSeqComposite,1014 refSeqComposite,1614 rmsk,165 uniprot,1872 uniprot,1876 line-up chainHg38,539 chainMm10,539 chainNetHg38,542 chainNetMm10,542 chainNetTarSyr2,542 chainTarSyr2,539 netHg38,539 netMm10,539 netTarSyr2,539 line-ups chainHg38,524 chainMm10,524 chainNetHg38,527 chainNetMm10,527 chainNetTarSyr2,527 chainTarSyr2,524 netHg38,524 netMm10,524 netTarSyr2,524 lineage transMapEnsemblV5,810 transMapEstV5,779 transMapRefSeqV5,779 transMapRnaV5,779 transMapV5,885 lineage-specific chainHg38,942 chainMm10,942 chainNetHg38,945 chainNetMm10,945 chainNetTarSyr2,945 chainTarSyr2,942 netHg38,942 netMm10,942 netTarSyr2,942 linear chainHg38,701 chainMm10,701 chainNetHg38,704 chainNetMm10,704 chainNetTarSyr2,704 chainTarSyr2,701 netHg38,701 netMm10,701 netTarSyr2,701 lineargap chainHg38,707 chainMm10,707 chainNetHg38,710 chainNetMm10,710 chainNetTarSyr2,710 chainTarSyr2,707 netHg38,707 netMm10,707 netTarSyr2,707 lines chainHg38,131 chainHg38,138 chainHg38,161 chainHg38,452 chainMm10,131 chainMm10,138 chainMm10,161 chainMm10,452 chainNetHg38,134 chainNetHg38,141 chainNetHg38,164 chainNetHg38,455 chainNetMm10,134 chainNetMm10,141 chainNetMm10,164 chainNetMm10,455 chainNetTarSyr2,134 chainNetTarSyr2,141 chainNetTarSyr2,164 chainNetTarSyr2,455 chainTarSyr2,131 chainTarSyr2,138 chainTarSyr2,161 chainTarSyr2,452 nestedRepeats,131 netHg38,131 netHg38,138 netHg38,161 netHg38,452 netMm10,131 netMm10,138 netMm10,161 netMm10,452 netTarSyr2,131 netTarSyr2,138 netTarSyr2,161 netTarSyr2,452 refSeqComposite,998 link gc5BaseBw,63 uniprot,491 uniprot,1675 linked refSeqComposite,1532 refSeqComposite,1647 linux.x86_64 cpgIslandExt,579 cpgIslandExtUnmasked,582 cpgIslandSuper,579 uniprot,1919 lipid uniprot,346 lipman mrna,472 mrna,496 xenoMrna,546 xenoMrna,570 lipoification uniprot,577 list mrna,158 refSeqComposite,763 refSeqComposite,1691 uniprot,979 uniprot,1165 uniprot,1831 xenoMrna,232 listed ensGene,49 literature refSeqComposite,283 refSeqComposite,659 uniprot,434 lm uniprot,2019 loaded windowmaskerSdust,79 local chainHg38,111 chainHg38,183 chainMm10,111 chainMm10,183 chainNetHg38,114 chainNetHg38,186 chainNetMm10,114 chainNetMm10,186 chainNetTarSyr2,114 chainNetTarSyr2,186 chainTarSyr2,111 chainTarSyr2,183 ensGene,73 nestedRepeats,98 netHg38,111 netHg38,183 netMm10,111 netMm10,183 netTarSyr2,111 netTarSyr2,183 refSeqComposite,1337 located simpleRepeat,21 location chainHg38,252 chainMm10,252 chainNetHg38,255 chainNetMm10,255 chainNetTarSyr2,255 chainTarSyr2,252 netHg38,252 netMm10,252 netTarSyr2,252 transMapEnsemblV5,404 transMapEnsemblV5,414 transMapEnsemblV5,481 transMapEstV5,373 transMapEstV5,383 transMapEstV5,450 transMapRefSeqV5,373 transMapRefSeqV5,383 transMapRefSeqV5,450 transMapRnaV5,373 transMapRnaV5,383 transMapRnaV5,450 transMapV5,479 transMapV5,489 transMapV5,556 uniprot,554 uniprot,767 uniprot,1417 locations gap,3 transMapEnsemblV5,493 transMapEstV5,462 transMapRefSeqV5,462 transMapRnaV5,462 transMapV5,568 uniprot,451 locus HLTOGAannotvHg38v1,123 logic mrna,236 xenoMrna,310 long refSeqComposite,1027 rmsk,161 rmsk,166 long-established transMapEnsemblV5,805 transMapEstV5,774 transMapRefSeqV5,774 transMapRnaV5,774 transMapV5,880 longer chainHg38,82 chainMm10,82 chainNetHg38,85 chainNetMm10,85 chainNetTarSyr2,85 chainTarSyr2,82 netHg38,82 netMm10,82 netTarSyr2,82 longest chainHg38,517 chainMm10,517 chainNetHg38,520 chainNetMm10,520 chainNetTarSyr2,520 chainTarSyr2,517 netHg38,517 netMm10,517 netTarSyr2,517 look chainHg38,46 chainMm10,46 chainNetHg38,49 chainNetMm10,49 chainNetTarSyr2,49 chainTarSyr2,46 netHg38,46 netMm10,46 netTarSyr2,46 loss HLTOGAannotvHg38v1,236 losses transMapEnsemblV5,803 transMapEstV5,772 transMapRefSeqV5,772 transMapRnaV5,772 transMapV5,878 lost HLTOGAannotvHg38v1,40 HLTOGAannotvHg38v1,260 HLTOGAannotvHg38v1,272 lot uniprot,1950 low nestedRepeats,39 rmsk,29 rmsk,181 lowe transMapEnsemblV5,793 transMapEstV5,762 transMapRefSeqV5,762 transMapRnaV5,762 transMapV5,868 lower chainHg38,493 chainMm10,493 chainNetHg38,496 chainNetMm10,496 chainNetTarSyr2,496 chainTarSyr2,493 netHg38,493 netMm10,493 netTarSyr2,493 lower-level chainHg38,858 chainHg38,864 chainMm10,858 chainMm10,864 chainNetHg38,861 chainNetHg38,867 chainNetMm10,861 chainNetMm10,867 chainNetTarSyr2,861 chainNetTarSyr2,867 chainTarSyr2,858 chainTarSyr2,864 netHg38,858 netHg38,864 netMm10,858 netMm10,864 netTarSyr2,858 netTarSyr2,864 ls-snp uniprot,1536 lt HLTOGAannotvHg38v1,213 refSeqComposite,944 ltr rmsk,170 m HLTOGAannotvHg38v1,345 augustusGene,287 augustusGene,289 augustusGene,317 cpgIslandExt,605 cpgIslandExt,607 cpgIslandExtUnmasked,608 cpgIslandExtUnmasked,610 cpgIslandSuper,605 cpgIslandSuper,607 mrna,467 transMapEnsemblV5,717 transMapEnsemblV5,724 transMapEnsemblV5,758 transMapEnsemblV5,760 transMapEnsemblV5,792 transMapEstV5,686 transMapEstV5,693 transMapEstV5,727 transMapEstV5,729 transMapEstV5,761 transMapRefSeqV5,686 transMapRefSeqV5,693 transMapRefSeqV5,727 transMapRefSeqV5,729 transMapRefSeqV5,761 transMapRnaV5,686 transMapRnaV5,693 transMapRnaV5,727 transMapRnaV5,729 transMapRnaV5,761 transMapV5,792 transMapV5,799 transMapV5,833 transMapV5,835 transMapV5,867 xenoMrna,541 machine HLTOGAannotvHg38v1,88 made rmsk,110 transMapEnsemblV5,396 transMapEstV5,365 transMapRefSeqV5,365 transMapRnaV5,365 transMapV5,471 uniprot,931 uniprot,938 maglott refSeqComposite,1796 xenoRefGene,366 mailing refSeqComposite,1690 uniprot,1830 main unipAliSwissprot,12 uniprot,156 uniprot,1548 maintained uniprot,719 make gold,76 refSeqComposite,116 refSeqComposite,1099 rmsk,123 transMapEnsemblV5,430 transMapEstV5,399 transMapRefSeqV5,399 transMapRnaV5,399 transMapV5,505 uniprot,1406 makedb rmsk,131 making uniprot,1978 mammalian nestedRepeats,368 nestedRepeats,382 refSeqComposite,1776 rmsk,391 rmsk,405 xenoRefGene,346 mammals HLTOGAannotvHg38v1,56 manner refSeqComposite,1627 uniprot,1469 manual refSeqComposite,258 uniprot,1652 manually refSeqComposite,250 refSeqComposite,421 many chainHg38,403 chainMm10,403 chainNetHg38,406 chainNetMm10,406 chainNetTarSyr2,406 chainTarSyr2,403 mrna,93 netHg38,403 netMm10,403 netTarSyr2,403 uniprot,932 uniprot,1124 xenoMrna,167 map chainHg38,331 chainMm10,331 chainNetHg38,334 chainNetMm10,334 chainNetTarSyr2,334 chainTarSyr2,331 netHg38,331 netMm10,331 netTarSyr2,331 transMapEnsemblV5,294 transMapEstV5,263 transMapRefSeqV5,263 transMapRnaV5,263 transMapV5,369 uniprot,758 uniprot,1885 mapped augustusGene,298 nestedRepeats,233 refSeqComposite,1108 transMapEnsemblV5,381 transMapEnsemblV5,413 transMapEnsemblV5,471 transMapEnsemblV5,769 transMapEstV5,350 transMapEstV5,382 transMapEstV5,440 transMapEstV5,738 transMapRefSeqV5,350 transMapRefSeqV5,382 transMapRefSeqV5,440 transMapRefSeqV5,738 transMapRnaV5,350 transMapRnaV5,382 transMapRnaV5,440 transMapRnaV5,738 transMapV5,131 transMapV5,456 transMapV5,488 transMapV5,546 transMapV5,844 uniprot,26 uniprot,97 uniprot,117 uniprot,132 uniprot,200 uniprot,213 uniprot,632 uniprot,1517 mapping cytoBandIdeo,7 gap,4 gc5BaseBw,8 gold,5 refSeqComposite,320 transMapEnsemblV5,267 transMapEnsemblV5,287 transMapEnsemblV5,300 transMapEstV5,236 transMapEstV5,256 transMapEstV5,269 transMapRefSeqV5,236 transMapRefSeqV5,256 transMapRefSeqV5,269 transMapRnaV5,236 transMapRnaV5,256 transMapRnaV5,269 transMapV5,342 transMapV5,362 transMapV5,375 ucscToINSDC,10 ucscToRefSeq,5 uniprot,725 uniprot,752 uniprot,775 uniprot,904 uniprot,1213 uniprot,1322 uniprot,1613 uniprot,1853 mappings transMapEnsemblV5,7 transMapEnsemblV5,503 transMapEstV5,5 transMapEstV5,472 transMapRefSeqV5,6 transMapRefSeqV5,472 transMapRnaV5,6 transMapRnaV5,472 transMapV5,578 uniprot,1362 maps transMapEnsemblV5,477 transMapEnsemblV5,490 transMapEstV5,446 transMapEstV5,459 transMapRefSeqV5,446 transMapRefSeqV5,459 transMapRnaV5,446 transMapRnaV5,459 transMapV5,72 transMapV5,552 transMapV5,565 mar augustusGene,309 transMapEnsemblV5,780 transMapEstV5,749 transMapRefSeqV5,749 transMapRnaV5,749 transMapV5,855 mario augustusGene,102 augustusGene,283 mark transMapEnsemblV5,682 transMapEstV5,651 transMapRefSeqV5,651 transMapRnaV5,651 transMapV5,757 uniprot,1539 uniprot,1956 marked refSeqComposite,525 markers microsat,23 markov augustusGene,325 masked cpgIslandExt,192 cpgIslandExt,198 cpgIslandExt,328 cpgIslandExtUnmasked,195 cpgIslandExtUnmasked,201 cpgIslandExtUnmasked,331 cpgIslandSuper,192 cpgIslandSuper,198 cpgIslandSuper,328 rmsk,71 windowmaskerSdust,5 windowmaskerSdust,16 masker windowmaskerSdust,102 masking cpgIslandExt,304 cpgIslandExtUnmasked,307 cpgIslandSuper,304 maskoutfa cpgIslandExt,414 cpgIslandExtUnmasked,417 cpgIslandSuper,414 match chainHg38,257 chainHg38,518 chainHg38,556 chainMm10,257 chainMm10,518 chainMm10,556 chainNetHg38,260 chainNetHg38,521 chainNetHg38,559 chainNetMm10,260 chainNetMm10,521 chainNetMm10,559 chainNetTarSyr2,260 chainNetTarSyr2,521 chainNetTarSyr2,559 chainTarSyr2,257 chainTarSyr2,518 chainTarSyr2,556 mrna,246 mrna,261 mrna,302 mrna,320 netHg38,257 netHg38,518 netHg38,556 netMm10,257 netMm10,518 netMm10,556 netTarSyr2,257 netTarSyr2,518 netTarSyr2,556 refSeqComposite,912 refSeqComposite,926 uniprot,1305 uniprot,1341 xenoMrna,85 xenoMrna,320 xenoMrna,335 xenoMrna,376 xenoMrna,394 matches mrna,53 xenoMrna,57 matching chainHg38,260 chainMm10,260 chainNetHg38,263 chainNetMm10,263 chainNetTarSyr2,263 chainTarSyr2,260 netHg38,260 netMm10,260 netTarSyr2,260 uniprot,1068 uniprot,1075 xenoMrna,100 matrix chainHg38,671 chainHg38,703 chainMm10,671 chainMm10,703 chainNetHg38,674 chainNetHg38,706 chainNetMm10,674 chainNetMm10,706 chainNetTarSyr2,674 chainNetTarSyr2,706 chainTarSyr2,671 chainTarSyr2,703 netHg38,671 netHg38,703 netMm10,671 netMm10,703 netTarSyr2,671 netTarSyr2,703 mature unipChain,3 uniprot,251 uniprot,292 maximally chainHg38,663 chainMm10,663 chainNetHg38,666 chainNetMm10,666 chainNetTarSyr2,666 chainTarSyr2,663 cpgIslandExt,250 cpgIslandExtUnmasked,253 cpgIslandSuper,250 netHg38,663 netMm10,663 netTarSyr2,663 maximilian uniprot,1944 maxtracks augustusGene,139 may HLTOGAannotvHg38v1,189 HLTOGAannotvHg38v1,263 HLTOGAannotvHg38v1,265 chainHg38,174 chainHg38,432 chainMm10,174 chainMm10,432 chainNetHg38,177 chainNetHg38,435 chainNetMm10,177 chainNetMm10,435 chainNetTarSyr2,177 chainNetTarSyr2,435 chainTarSyr2,174 chainTarSyr2,432 cpgIslandExt,36 cpgIslandExtUnmasked,39 cpgIslandSuper,36 gc5BaseBw,40 mrna,89 mrna,208 mrna,218 mrna,326 mrna,370 nestedRepeats,268 nestedRepeats,290 netHg38,174 netHg38,432 netMm10,174 netMm10,432 netTarSyr2,174 netTarSyr2,432 refSeqComposite,60 refSeqComposite,663 rmsk,297 rmsk,307 simpleRepeat,43 transMapEnsemblV5,108 transMapEnsemblV5,143 transMapEstV5,77 transMapEstV5,112 transMapRefSeqV5,77 transMapRefSeqV5,112 transMapRnaV5,77 transMapRnaV5,112 transMapV5,183 transMapV5,218 uniprot,2046 xenoMrna,163 xenoMrna,282 xenoMrna,292 xenoMrna,400 xenoMrna,444 mcgarvey refSeqComposite,1768 xenoRefGene,338 md5 uniprot,1601 mediating uniprot,314 medium chainHg38,708 chainMm10,708 chainNetHg38,711 chainNetMm10,711 chainNetTarSyr2,711 chainTarSyr2,708 netHg38,708 netMm10,708 netTarSyr2,708 refSeqComposite,622 xenoRefGene,73 mellifera augustusGene,216 mementos nestedRepeats,377 rmsk,400 menu refSeqComposite,850 xenoRefGene,174 method HLTOGAannotvHg38v1,27 ensGene,120 uniprot,726 uniprot,753 uniprot,776 methods HLTOGAannotvHg38v1,41 augustusGene,46 chainHg38,568 chainHg38,771 chainMm10,568 chainMm10,771 chainNetHg38,571 chainNetHg38,774 chainNetMm10,571 chainNetMm10,774 chainNetTarSyr2,571 chainNetTarSyr2,774 chainTarSyr2,568 chainTarSyr2,771 cpgIslandExt,224 cpgIslandExtUnmasked,227 cpgIslandSuper,224 ensGene,29 ensGene,35 genscan,130 genscan,197 microsat,45 mrna,386 nestedRepeats,244 netHg38,568 netHg38,771 netMm10,568 netMm10,771 netTarSyr2,568 netTarSyr2,771 refSeqComposite,91 refSeqComposite,1140 refSeqComposite,1222 rmsk,286 simpleRepeat,55 transMapEnsemblV5,152 transMapEstV5,121 transMapRefSeqV5,121 transMapRnaV5,121 transMapV5,227 uniprot,777 windowmaskerSdust,46 xenoMrna,460 xenoRefGene,217 methylated cpgIslandExt,71 cpgIslandExt,100 cpgIslandExt,132 cpgIslandExtUnmasked,74 cpgIslandExtUnmasked,103 cpgIslandExtUnmasked,135 cpgIslandSuper,71 cpgIslandSuper,100 cpgIslandSuper,132 methylation cpgIslandExt,73 cpgIslandExtUnmasked,76 cpgIslandSuper,73 michael HLTOGAannotvHg38v1,321 micro-satellites rmsk,180 microsatellite microsat,1 microsat,22 microsatellites microsat,2 middle HLTOGAannotvHg38v1,144 HLTOGAannotvHg38v1,178 HLTOGAannotvHg38v1,225 HLTOGAannotvHg38v1,244 miklem cpgIslandExt,598 cpgIslandExtUnmasked,601 cpgIslandSuper,598 miller chainHg38,936 chainHg38,973 chainHg38,1034 chainHg38,1054 chainHg38,1102 chainMm10,936 chainMm10,973 chainMm10,1034 chainMm10,1054 chainMm10,1102 chainNetHg38,939 chainNetHg38,976 chainNetHg38,1037 chainNetHg38,1057 chainNetHg38,1105 chainNetMm10,939 chainNetMm10,976 chainNetMm10,1037 chainNetMm10,1057 chainNetMm10,1105 chainNetTarSyr2,939 chainNetTarSyr2,976 chainNetTarSyr2,1037 chainNetTarSyr2,1057 chainNetTarSyr2,1105 chainTarSyr2,936 chainTarSyr2,973 chainTarSyr2,1034 chainTarSyr2,1054 chainTarSyr2,1102 netHg38,936 netHg38,973 netHg38,1034 netHg38,1054 netHg38,1102 netMm10,936 netMm10,973 netMm10,1034 netMm10,1054 netMm10,1102 netTarSyr2,936 netTarSyr2,973 netTarSyr2,1034 netTarSyr2,1054 netTarSyr2,1102 minexonintronprob augustusGene,135 minimum chainHg38,684 chainMm10,684 chainNetHg38,687 chainNetMm10,687 chainNetTarSyr2,687 chainTarSyr2,684 netHg38,684 netMm10,684 netTarSyr2,684 minmeanexonintronprob augustusGene,137 minmei chainHg38,928 chainMm10,928 chainNetHg38,931 chainNetMm10,931 chainNetTarSyr2,931 chainTarSyr2,928 netHg38,928 netMm10,928 netTarSyr2,928 mismatch refSeqComposite,896 rmsk,218 mismatching refSeqComposite,900 misplacements uniprot,853 missing HLTOGAannotvHg38v1,205 HLTOGAannotvHg38v1,212 mitochondrion refSeqComposite,241 mj refSeqComposite,1767 xenoRefGene,337 mk_counts windowmaskerSdust,59 mm10 chainMm10,7 chainMm10,69 chainMm10,309 chainNetMm10,8 chainNetMm10,72 chainNetMm10,312 chainNetMm10Viewchain,6 chainNetMm10Viewnet,6 netMm10,7 netMm10,69 netMm10,309 mode chainHg38,387 chainMm10,387 chainNetHg38,390 chainNetMm10,390 chainNetTarSyr2,390 chainTarSyr2,387 gold,69 mrna,44 mrna,74 nestedRepeats,119 nestedRepeats,160 nestedRepeats,169 netHg38,387 netMm10,387 netTarSyr2,387 rmsk,142 xenoMrna,48 xenoMrna,148 model augustusGene,121 augustusGene,326 genscan,140 modeling genscan,182 models augustusGene,49 augustusGene,65 augustusGene,97 augustusGene,145 augustusGene,178 genscan,158 uniprot,733 modes chainHg38,242 chainMm10,242 chainNetHg38,245 chainNetMm10,245 chainNetTarSyr2,245 chainTarSyr2,242 netHg38,242 netMm10,242 netTarSyr2,242 modification cpgIslandExt,591 cpgIslandExtUnmasked,594 cpgIslandSuper,591 modifications unipModif,2 unipModif,6 uniprot,340 uniprot,574 modified rmsk,57 uniprot,343 modsnp uniprot,2030 moiety-binding uniprot,347 mol cpgIslandExt,614 cpgIslandExtUnmasked,617 cpgIslandSuper,614 genscan,221 molecular genscan,199 monkey chainHg38,73 chainHg38,100 chainHg38,158 chainHg38,205 chainHg38,272 chainHg38,280 chainHg38,580 chainHg38,633 chainMm10,73 chainMm10,100 chainMm10,158 chainMm10,205 chainMm10,272 chainMm10,280 chainMm10,580 chainMm10,633 chainNetHg38,76 chainNetHg38,103 chainNetHg38,161 chainNetHg38,208 chainNetHg38,275 chainNetHg38,283 chainNetHg38,583 chainNetHg38,636 chainNetMm10,76 chainNetMm10,103 chainNetMm10,161 chainNetMm10,208 chainNetMm10,275 chainNetMm10,283 chainNetMm10,583 chainNetMm10,636 chainNetTarSyr2,76 chainNetTarSyr2,103 chainNetTarSyr2,161 chainNetTarSyr2,208 chainNetTarSyr2,275 chainNetTarSyr2,283 chainNetTarSyr2,583 chainNetTarSyr2,636 chainTarSyr2,73 chainTarSyr2,100 chainTarSyr2,158 chainTarSyr2,205 chainTarSyr2,272 chainTarSyr2,280 chainTarSyr2,580 chainTarSyr2,633 gap,18 gold,20 mrna,2 mrna,5 mrna,20 mrna,389 netHg38,73 netHg38,100 netHg38,158 netHg38,205 netHg38,272 netHg38,280 netHg38,580 netHg38,633 netMm10,73 netMm10,100 netMm10,158 netMm10,205 netMm10,272 netMm10,280 netMm10,580 netMm10,633 netTarSyr2,73 netTarSyr2,100 netTarSyr2,158 netTarSyr2,205 netTarSyr2,272 netTarSyr2,280 netTarSyr2,580 netTarSyr2,633 refSeqComposite,20 refSeqComposite,443 refSeqComposite,465 refSeqComposite,499 refSeqComposite,1235 transMapEnsemblV5,91 transMapEnsemblV5,204 transMapEnsemblV5,335 transMapEstV5,60 transMapEstV5,173 transMapEstV5,304 transMapRefSeqV5,60 transMapRefSeqV5,173 transMapRefSeqV5,304 transMapRnaV5,60 transMapRnaV5,173 transMapRnaV5,304 transMapV5,61 transMapV5,279 transMapV5,410 xenoMrna,4 xenoMrna,30 xenoMrna,468 xenoRefGene,4 xenoRefGene,25 xenoRefGene,225 months uniprot,1573 morales HLTOGAannotvHg38v1,346 more augustusGene,35 chainHg38,163 chainHg38,224 chainMm10,163 chainMm10,224 chainNetHg38,166 chainNetHg38,227 chainNetMm10,166 chainNetMm10,227 chainNetTarSyr2,166 chainNetTarSyr2,227 chainTarSyr2,163 chainTarSyr2,224 cpgIslandExt,541 cpgIslandExtUnmasked,544 cpgIslandSuper,541 ensGene,18 ensGene,158 genscan,50 genscan,125 genscan,163 microsat,96 mrna,49 mrna,121 mrna,228 mrna,349 mrna,375 nestedRepeats,211 nestedRepeats,300 netHg38,163 netHg38,224 netMm10,163 netMm10,224 netTarSyr2,163 netTarSyr2,224 refSeqComposite,94 refSeqComposite,130 refSeqComposite,852 refSeqComposite,1383 refSeqComposite,1463 rmsk,323 simpleRepeat,57 transMapEnsemblV5,131 transMapEnsemblV5,148 transMapEnsemblV5,224 transMapEnsemblV5,269 transMapEnsemblV5,291 transMapEnsemblV5,568 transMapEstV5,100 transMapEstV5,117 transMapEstV5,193 transMapEstV5,238 transMapEstV5,260 transMapEstV5,537 transMapRefSeqV5,100 transMapRefSeqV5,117 transMapRefSeqV5,193 transMapRefSeqV5,238 transMapRefSeqV5,260 transMapRefSeqV5,537 transMapRnaV5,100 transMapRnaV5,117 transMapRnaV5,193 transMapRnaV5,238 transMapRnaV5,260 transMapRnaV5,537 transMapV5,63 transMapV5,107 transMapV5,164 transMapV5,206 transMapV5,223 transMapV5,299 transMapV5,344 transMapV5,366 transMapV5,643 uniprot,498 uniprot,691 uniprot,984 uniprot,1841 xenoMrna,53 xenoMrna,195 xenoMrna,302 xenoMrna,423 xenoMrna,449 xenoRefGene,176 morgulis windowmaskerSdust,90 most augustusGene,93 augustusGene,110 nestedRepeats,249 refSeqComposite,580 refSeqComposite,947 transMapV5,93 uniprot,683 uniprot,756 uniprot,1295 uniprot,1391 mostly uniprot,1365 motifs uniprot,388 mouse chainHg38,1067 chainMm10,1 chainMm10,3 chainMm10,65 chainMm10,97 chainMm10,150 chainMm10,270 chainMm10,297 chainMm10,578 chainMm10,627 chainMm10,1067 chainNetHg38,1070 chainNetMm10,1 chainNetMm10,4 chainNetMm10,68 chainNetMm10,100 chainNetMm10,153 chainNetMm10,273 chainNetMm10,300 chainNetMm10,581 chainNetMm10,630 chainNetMm10,1070 chainNetMm10Viewchain,2 chainNetMm10Viewnet,2 chainNetTarSyr2,1070 chainTarSyr2,1067 netHg38,1067 netMm10,1 netMm10,3 netMm10,65 netMm10,97 netMm10,150 netMm10,270 netMm10,297 netMm10,578 netMm10,627 netMm10,1067 netTarSyr2,1067 transMapEnsemblV5,44 transMapEnsemblV5,367 transMapEstV5,336 transMapRefSeqV5,336 transMapRnaV5,336 transMapV5,442 uniprot,521 uniprot,535 mrna mrna,9 mrna,14 mrna,129 mrna,403 mrna,443 mrna,450 transMapEnsemblV5,458 transMapEstV5,427 transMapRefSeqV5,427 transMapRnaV5,18 transMapRnaV5,427 transMapV5,100 transMapV5,533 xenoMrna,8 xenoMrna,22 xenoMrna,203 xenoMrna,476 xenoMrna,517 xenoMrna,524 mrnas mrna,3 mrna,6 mrna,21 mrna,139 mrna,244 mrna,259 mrna,300 mrna,318 mrna,343 mrna,390 transMapEnsemblV5,173 transMapEstV5,142 transMapRefSeqV5,142 transMapRnaV5,142 transMapV5,111 transMapV5,248 xenoMrna,2 xenoMrna,5 xenoMrna,213 xenoMrna,318 xenoMrna,333 xenoMrna,374 xenoMrna,392 xenoMrna,417 xenoMrna,462 much chainHg38,885 chainHg38,902 chainMm10,885 chainMm10,902 chainNetHg38,888 chainNetHg38,905 chainNetMm10,888 chainNetMm10,905 chainNetTarSyr2,888 chainNetTarSyr2,905 chainTarSyr2,885 chainTarSyr2,902 nestedRepeats,210 netHg38,885 netHg38,902 netMm10,885 netMm10,902 netTarSyr2,885 netTarSyr2,902 mujica uniprot,1967 multiple chainHg38,195 chainMm10,195 chainNetHg38,198 chainNetMm10,198 chainNetTarSyr2,198 chainTarSyr2,195 mrna,206 mrna,406 netHg38,195 netMm10,195 netTarSyr2,195 refSeqComposite,1255 refSeqComposite,1302 transMapEnsemblV5,501 transMapEstV5,470 transMapRefSeqV5,470 transMapRnaV5,470 transMapV5,576 uniprot,58 uniprot,1067 uniprot,1095 xenoMrna,280 xenoMrna,479 xenoRefGene,245 munegowda HLTOGAannotvHg38v1,336 must refSeqComposite,303 refSeqComposite,1636 mutagenesis uniprot,353 mutat uniprot,2044 mutated uniprot,618 mutation HLTOGAannotvHg38v1,157 HLTOGAannotvHg38v1,186 HLTOGAannotvHg38v1,233 HLTOGAannotvHg38v1,241 chainHg38,184 chainMm10,184 chainNetHg38,187 chainNetMm10,187 chainNetTarSyr2,187 chainTarSyr2,184 netHg38,184 netMm10,184 netTarSyr2,184 refSeqComposite,563 mutation-related uniprot,408 mutations HLTOGAannotvHg38v1,276 HLTOGAannotvHg38v1,306 unipMut,1 unipMut,5 uniprot,352 mysql cpgIslandExt,538 cpgIslandExtUnmasked,541 cpgIslandSuper,538 ensGene,115 ensGene,125 refSeqComposite,1328 refSeqComposite,1631 refSeqComposite,1645 n cpgIslandExt,386 cpgIslandExt,394 cpgIslandExt,456 cpgIslandExtUnmasked,389 cpgIslandExtUnmasked,397 cpgIslandExtUnmasked,459 cpgIslandSuper,386 cpgIslandSuper,394 cpgIslandSuper,456 refSeqComposite,918 refSeqComposite,959 refSeqComposite,986 refSeqComposite,1045 refSeqComposite,1072 refSeqComposite,1087 name chainHg38,369 chainMm10,369 chainNetHg38,372 chainNetMm10,372 chainNetTarSyr2,372 chainTarSyr2,369 mrna,147 nestedRepeats,136 netHg38,369 netMm10,369 netTarSyr2,369 refSeqComposite,759 refSeqComposite,772 refSeqComposite,782 refSeqComposite,790 refSeqComposite,802 uniprot,105 uniprot,461 uniprot,541 uniprot,1577 xenoMrna,221 xenoRefGene,109 xenoRefGene,119 xenoRefGene,124 names chainHg38,246 chainMm10,246 chainNetHg38,249 chainNetMm10,249 chainNetTarSyr2,249 chainTarSyr2,246 netHg38,246 netMm10,246 netTarSyr2,246 refSeqComposite,807 ucscToINSDC,21 ucscToINSDC,24 ucscToRefSeq,16 xenoRefGene,131 native augustusGene,295 transMapEnsemblV5,766 transMapEstV5,735 transMapRefSeqV5,735 transMapRnaV5,735 transMapV5,123 transMapV5,841 natl chainHg38,1072 chainMm10,1072 chainNetHg38,1075 chainNetMm10,1075 chainNetTarSyr2,1075 chainTarSyr2,1072 netHg38,1072 netMm10,1072 netTarSyr2,1072 natural chainHg38,823 chainMm10,823 chainNetHg38,826 chainNetMm10,826 chainNetTarSyr2,826 chainTarSyr2,823 netHg38,823 netMm10,823 netTarSyr2,823 nbci uniprot,822 nbsp HLTOGAannotvHg38v1,142 HLTOGAannotvHg38v1,164 HLTOGAannotvHg38v1,211 HLTOGAannotvHg38v1,234 HLTOGAannotvHg38v1,271 chainHg38,674 chainMm10,674 chainNetHg38,677 chainNetMm10,677 chainNetTarSyr2,677 chainTarSyr2,674 netHg38,674 netMm10,674 netTarSyr2,674 ncbi gap,28 gap,31 gap,57 gold,30 gold,33 gold,56 ncbiRefSeq,3 ncbiRefSeqCurated,3 ncbiRefSeqGenomicDiff,5 ncbiRefSeqOther,3 ncbiRefSeqPredicted,3 refSeqComposite,1 refSeqComposite,6 refSeqComposite,13 refSeqComposite,28 refSeqComposite,73 refSeqComposite,80 refSeqComposite,105 refSeqComposite,318 refSeqComposite,374 refSeqComposite,546 refSeqComposite,642 refSeqComposite,649 refSeqComposite,693 refSeqComposite,1160 refSeqComposite,1191 refSeqComposite,1207 refSeqComposite,1728 refSeqComposite,1798 ucscToINSDC,39 ucscToRefSeq,22 ucscToRefSeq,33 uniprot,840 uniprot,856 uniprot,1024 uniprot,1046 uniprot,1049 uniprot,1079 uniprot,1204 uniprot,1274 uniprot,1280 uniprot,1289 uniprot,1299 windowmaskerSdust,29 windowmaskerSdust,43 xenoRefGene,29 xenoRefGene,299 xenoRefGene,368 ncbirefseq refSeqComposite,1411 refSeqComposite,1555 refSeqComposite,1699 ncbirefseqcurated refSeqComposite,1414 ncbirefseqdiffs.bb refSeqComposite,1494 ncbirefseqother.bb refSeqComposite,1492 refSeqComposite,1556 ncbirefseqpredicted refSeqComposite,1417 refSeqComposite,1619 ncbirefseqpredicted.gtf refSeqComposite,1620 ncbirefseqpsl refSeqComposite,1425 ndash refSeqComposite,200 refSeqComposite,211 refSeqComposite,341 refSeqComposite,380 refSeqComposite,435 refSeqComposite,459 refSeqComposite,482 refSeqComposite,519 refSeqComposite,552 refSeqComposite,897 refSeqComposite,931 refSeqComposite,964 refSeqComposite,1022 refSeqComposite,1048 near cpgIslandExt,31 cpgIslandExtUnmasked,34 cpgIslandSuper,31 refSeqComposite,1648 near-best transMapEnsemblV5,358 transMapEstV5,327 transMapRefSeqV5,327 transMapRnaV5,327 transMapV5,433 necessary chainHg38,807 chainMm10,807 chainNetHg38,810 chainNetMm10,810 chainNetTarSyr2,810 chainTarSyr2,807 netHg38,807 netMm10,807 netTarSyr2,807 nematodes augustusGene,211 net chainHg38,34 chainHg38,262 chainHg38,265 chainHg38,382 chainHg38,761 chainMm10,34 chainMm10,262 chainMm10,265 chainMm10,382 chainMm10,761 chainNetHg38,3 chainNetHg38,11 chainNetHg38,37 chainNetHg38,265 chainNetHg38,268 chainNetHg38,385 chainNetHg38,764 chainNetHg38Viewchain,9 chainNetHg38Viewnet,1 chainNetHg38Viewnet,9 chainNetMm10,3 chainNetMm10,11 chainNetMm10,37 chainNetMm10,265 chainNetMm10,268 chainNetMm10,385 chainNetMm10,764 chainNetMm10Viewchain,9 chainNetMm10Viewnet,1 chainNetMm10Viewnet,9 chainNetTarSyr2,3 chainNetTarSyr2,11 chainNetTarSyr2,37 chainNetTarSyr2,265 chainNetTarSyr2,268 chainNetTarSyr2,385 chainNetTarSyr2,764 chainNetTarSyr2Viewchain,9 chainNetTarSyr2Viewnet,1 chainNetTarSyr2Viewnet,9 chainTarSyr2,34 chainTarSyr2,262 chainTarSyr2,265 chainTarSyr2,382 chainTarSyr2,761 netHg38,2 netHg38,9 netHg38,34 netHg38,262 netHg38,265 netHg38,382 netHg38,761 netMm10,2 netMm10,9 netMm10,34 netMm10,262 netMm10,265 netMm10,382 netMm10,761 netTarSyr2,2 netTarSyr2,9 netTarSyr2,34 netTarSyr2,262 netTarSyr2,265 netTarSyr2,382 netTarSyr2,761 transMapV5,140 netclass chainHg38,877 chainHg38,1000 chainMm10,877 chainMm10,1000 chainNetHg38,880 chainNetHg38,1003 chainNetMm10,880 chainNetMm10,1003 chainNetTarSyr2,880 chainNetTarSyr2,1003 chainTarSyr2,877 chainTarSyr2,1000 netHg38,877 netHg38,1000 netMm10,877 netMm10,1000 netTarSyr2,877 netTarSyr2,1000 netfilter transMapEnsemblV5,254 transMapEstV5,223 transMapRefSeqV5,223 transMapRnaV5,223 transMapV5,329 nets chainHg38,987 chainMm10,987 chainNetHg38,990 chainNetMm10,990 chainNetTarSyr2,990 chainTarSyr2,987 netHg38,987 netMm10,987 netTarSyr2,987 transMapEnsemblV5,200 transMapEnsemblV5,243 transMapEnsemblV5,249 transMapEnsemblV5,263 transMapEstV5,169 transMapEstV5,212 transMapEstV5,218 transMapEstV5,232 transMapRefSeqV5,169 transMapRefSeqV5,212 transMapRefSeqV5,218 transMapRefSeqV5,232 transMapRnaV5,169 transMapRnaV5,212 transMapRnaV5,218 transMapRnaV5,232 transMapV5,89 transMapV5,275 transMapV5,318 transMapV5,324 transMapV5,338 netsyntenic chainHg38,845 chainHg38,998 chainMm10,845 chainMm10,998 chainNetHg38,848 chainNetHg38,1001 chainNetMm10,848 chainNetMm10,1001 chainNetTarSyr2,848 chainNetTarSyr2,1001 chainTarSyr2,845 chainTarSyr2,998 netHg38,845 netHg38,998 netMm10,845 netMm10,998 netTarSyr2,845 netTarSyr2,998 new augustusGene,329 newer nestedRepeats,270 rmsk,106 newly cpgIslandExt,77 cpgIslandExtUnmasked,80 cpgIslandSuper,77 next chainHg38,348 chainHg38,377 chainMm10,348 chainMm10,377 chainNetHg38,351 chainNetHg38,380 chainNetMm10,351 chainNetMm10,380 chainNetTarSyr2,351 chainNetTarSyr2,380 chainTarSyr2,348 chainTarSyr2,377 netHg38,348 netHg38,377 netMm10,348 netMm10,377 netTarSyr2,348 netTarSyr2,377 refSeqComposite,167 refSeqComposite,755 nig augustusGene,270 nm refSeqComposite,225 refSeqComposite,492 nm_ ncbiRefSeq,9 ncbiRefSeqCurated,8 ncbiRefSeqOther,8 nm_012309 refSeqComposite,1139 nm_012309.4 refSeqComposite,1137 no HLTOGAannotvHg38v1,155 HLTOGAannotvHg38v1,184 HLTOGAannotvHg38v1,231 microsat,73 transMapEnsemblV5,223 transMapEstV5,192 transMapRefSeqV5,192 transMapRnaV5,192 transMapV5,298 uniprot,1031 uniprot,1078 uniprot,1262 uniprot,1324 nomask cpgIslandExt,498 cpgIslandExtUnmasked,501 cpgIslandSuper,498 non-alignable chainHg38,49 chainMm10,49 chainNetHg38,52 chainNetMm10,52 chainNetTarSyr2,52 chainTarSyr2,49 netHg38,49 netMm10,49 netTarSyr2,49 non-coding augustusGene,75 refSeqComposite,1088 xenoRefGene,193 non-protein-coding refSeqComposite,23 xenoRefGene,18 xenoRefGene,201 non-redundant refSeqComposite,1804 xenoRefGene,374 non-squirrel xenoMrna,3 xenoRefGene,3 nonsyn chainHg38,554 chainMm10,554 chainNetHg38,557 chainNetMm10,557 chainNetTarSyr2,557 chainTarSyr2,554 netHg38,554 netMm10,554 netTarSyr2,554 nor xenoMrna,126 normally cpgIslandExt,42 cpgIslandExtUnmasked,45 cpgIslandSuper,42 not HLTOGAannotvHg38v1,252 HLTOGAannotvHg38v1,266 chainHg38,812 chainMm10,812 chainNetHg38,815 chainNetMm10,815 chainNetTarSyr2,815 chainTarSyr2,812 cpgIslandExt,131 cpgIslandExt,186 cpgIslandExtUnmasked,134 cpgIslandExtUnmasked,189 cpgIslandSuper,131 cpgIslandSuper,186 mrna,298 ncbiRefSeqOther,7 netHg38,812 netMm10,812 netTarSyr2,812 refSeqComposite,177 refSeqComposite,391 refSeqComposite,429 refSeqComposite,474 refSeqComposite,675 refSeqComposite,700 refSeqComposite,1060 refSeqComposite,1138 rmsk,113 rmsk,313 transMapEnsemblV5,62 uniprot,169 uniprot,627 uniprot,959 uniprot,1130 uniprot,1455 xenoMrna,122 xenoMrna,372 note nestedRepeats,264 refSeqComposite,176 refSeqComposite,1621 transMapEnsemblV5,499 transMapEstV5,468 transMapRefSeqV5,468 transMapRnaV5,468 transMapV5,574 uniprot,695 novel HLTOGAannotvHg38v1,75 transMapEnsemblV5,740 transMapEstV5,709 transMapRefSeqV5,709 transMapRnaV5,709 transMapV5,815 novo augustusGene,304 transMapEnsemblV5,775 transMapEstV5,744 transMapRefSeqV5,744 transMapRnaV5,744 transMapV5,850 now uniprot,1680 np refSeqComposite,227 refSeqComposite,230 np_ ncbiRefSeq,13 ncbiRefSeqCurated,10 ncbiRefSeqOther,12 nr refSeqComposite,226 refSeqComposite,494 nr_ ncbiRefSeq,11 ncbiRefSeqCurated,9 ncbiRefSeqOther,9 ns chainHg38,892 chainMm10,892 chainNetHg38,895 chainNetMm10,895 chainNetTarSyr2,895 chainTarSyr2,892 netHg38,892 netMm10,892 netTarSyr2,892 nuclear rmsk,155 rmsk,163 nucleic ensGene,195 microsat,125 mrna,479 mrna,504 refSeqComposite,1779 refSeqComposite,1812 simpleRepeat,85 uniprot,1997 xenoMrna,553 xenoMrna,578 xenoRefGene,349 xenoRefGene,382 nucleotide cpgIslandExt,352 cpgIslandExtUnmasked,355 cpgIslandSuper,352 ucscToINSDC,6 ucscToINSDC,28 number augustusGene,153 cpgIslandExt,279 cpgIslandExt,286 cpgIslandExt,292 cpgIslandExt,337 cpgIslandExt,383 cpgIslandExt,387 cpgIslandExt,390 cpgIslandExtUnmasked,282 cpgIslandExtUnmasked,289 cpgIslandExtUnmasked,295 cpgIslandExtUnmasked,340 cpgIslandExtUnmasked,386 cpgIslandExtUnmasked,390 cpgIslandExtUnmasked,393 cpgIslandSuper,279 cpgIslandSuper,286 cpgIslandSuper,292 cpgIslandSuper,337 cpgIslandSuper,383 cpgIslandSuper,387 cpgIslandSuper,390 rmsk,233 transMapEnsemblV5,427 transMapEnsemblV5,550 transMapEstV5,396 transMapEstV5,519 transMapRefSeqV5,396 transMapRefSeqV5,519 transMapRnaV5,396 transMapRnaV5,519 transMapV5,502 transMapV5,625 o refSeqComposite,1761 xenoRefGene,331 obs cpgIslandExt,380 cpgIslandExtUnmasked,383 cpgIslandSuper,380 observed cpgIslandExt,278 cpgIslandExt,364 cpgIslandExtUnmasked,281 cpgIslandExtUnmasked,367 cpgIslandSuper,278 cpgIslandSuper,364 uniprot,1114 obtain transMapEnsemblV5,652 transMapEstV5,621 transMapRefSeqV5,621 transMapRnaV5,621 transMapV5,727 uniprot,1803 obtained augustusGene,126 cpgIslandExt,562 cpgIslandExt,573 cpgIslandExtUnmasked,565 cpgIslandExtUnmasked,576 cpgIslandSuper,562 cpgIslandSuper,573 refSeqComposite,1486 refSeqComposite,1506 transMapEnsemblV5,157 transMapEnsemblV5,612 transMapEstV5,126 transMapEstV5,581 transMapRefSeqV5,126 transMapRefSeqV5,581 transMapRnaV5,126 transMapRnaV5,581 transMapV5,232 transMapV5,687 uniprot,1506 uniprot,1695 occasional refSeqComposite,63 occur simpleRepeat,36 oct augustusGene,334 gap,15 gold,17 of HLTOGAannotvHg38v1,49 HLTOGAannotvHg38v1,81 HLTOGAannotvHg38v1,112 HLTOGAannotvHg38v1,115 HLTOGAannotvHg38v1,146 HLTOGAannotvHg38v1,168 HLTOGAannotvHg38v1,180 HLTOGAannotvHg38v1,201 HLTOGAannotvHg38v1,215 HLTOGAannotvHg38v1,227 HLTOGAannotvHg38v1,246 augustusGene,72 augustusGene,84 augustusGene,92 augustusGene,94 augustusGene,154 augustusGene,195 augustusGene,236 chainHg38,17 chainHg38,64 chainHg38,182 chainHg38,202 chainHg38,255 chainHg38,277 chainHg38,360 chainHg38,370 chainHg38,488 chainHg38,508 chainHg38,643 chainHg38,648 chainHg38,666 chainHg38,686 chainHg38,886 chainHg38,961 chainHg38,983 chainHg38,1007 chainHg38,1021 chainMm10,17 chainMm10,64 chainMm10,182 chainMm10,202 chainMm10,255 chainMm10,277 chainMm10,360 chainMm10,370 chainMm10,488 chainMm10,508 chainMm10,643 chainMm10,648 chainMm10,666 chainMm10,686 chainMm10,886 chainMm10,961 chainMm10,983 chainMm10,1007 chainMm10,1021 chainNetHg38,20 chainNetHg38,67 chainNetHg38,185 chainNetHg38,205 chainNetHg38,258 chainNetHg38,280 chainNetHg38,363 chainNetHg38,373 chainNetHg38,491 chainNetHg38,511 chainNetHg38,646 chainNetHg38,651 chainNetHg38,669 chainNetHg38,689 chainNetHg38,889 chainNetHg38,964 chainNetHg38,986 chainNetHg38,1010 chainNetHg38,1024 chainNetMm10,20 chainNetMm10,67 chainNetMm10,185 chainNetMm10,205 chainNetMm10,258 chainNetMm10,280 chainNetMm10,363 chainNetMm10,373 chainNetMm10,491 chainNetMm10,511 chainNetMm10,646 chainNetMm10,651 chainNetMm10,669 chainNetMm10,689 chainNetMm10,889 chainNetMm10,964 chainNetMm10,986 chainNetMm10,1010 chainNetMm10,1024 chainNetTarSyr2,20 chainNetTarSyr2,67 chainNetTarSyr2,185 chainNetTarSyr2,205 chainNetTarSyr2,258 chainNetTarSyr2,280 chainNetTarSyr2,363 chainNetTarSyr2,373 chainNetTarSyr2,491 chainNetTarSyr2,511 chainNetTarSyr2,646 chainNetTarSyr2,651 chainNetTarSyr2,669 chainNetTarSyr2,689 chainNetTarSyr2,889 chainNetTarSyr2,964 chainNetTarSyr2,986 chainNetTarSyr2,1010 chainNetTarSyr2,1024 chainTarSyr2,17 chainTarSyr2,64 chainTarSyr2,182 chainTarSyr2,202 chainTarSyr2,255 chainTarSyr2,277 chainTarSyr2,360 chainTarSyr2,370 chainTarSyr2,488 chainTarSyr2,508 chainTarSyr2,643 chainTarSyr2,648 chainTarSyr2,666 chainTarSyr2,686 chainTarSyr2,886 chainTarSyr2,961 chainTarSyr2,983 chainTarSyr2,1007 chainTarSyr2,1021 cpgIslandExt,91 cpgIslandExt,108 cpgIslandExt,144 cpgIslandExt,171 cpgIslandExt,200 cpgIslandExt,221 cpgIslandExt,264 cpgIslandExt,277 cpgIslandExt,280 cpgIslandExt,290 cpgIslandExt,293 cpgIslandExt,312 cpgIslandExt,338 cpgIslandExt,350 cpgIslandExt,363 cpgIslandExt,384 cpgIslandExt,388 cpgIslandExt,391 cpgIslandExt,396 cpgIslandExt,400 cpgIslandExt,592 cpgIslandExtUnmasked,94 cpgIslandExtUnmasked,111 cpgIslandExtUnmasked,147 cpgIslandExtUnmasked,174 cpgIslandExtUnmasked,203 cpgIslandExtUnmasked,224 cpgIslandExtUnmasked,267 cpgIslandExtUnmasked,280 cpgIslandExtUnmasked,283 cpgIslandExtUnmasked,293 cpgIslandExtUnmasked,296 cpgIslandExtUnmasked,315 cpgIslandExtUnmasked,341 cpgIslandExtUnmasked,353 cpgIslandExtUnmasked,366 cpgIslandExtUnmasked,387 cpgIslandExtUnmasked,391 cpgIslandExtUnmasked,394 cpgIslandExtUnmasked,399 cpgIslandExtUnmasked,403 cpgIslandExtUnmasked,595 cpgIslandSuper,91 cpgIslandSuper,108 cpgIslandSuper,144 cpgIslandSuper,171 cpgIslandSuper,200 cpgIslandSuper,221 cpgIslandSuper,264 cpgIslandSuper,277 cpgIslandSuper,280 cpgIslandSuper,290 cpgIslandSuper,293 cpgIslandSuper,312 cpgIslandSuper,338 cpgIslandSuper,350 cpgIslandSuper,363 cpgIslandSuper,384 cpgIslandSuper,388 cpgIslandSuper,391 cpgIslandSuper,396 cpgIslandSuper,400 cpgIslandSuper,592 ensGene,33 ensGene,134 gap,41 gap,64 gap,83 gap,89 gap,123 gc5BaseBw,19 gc5BaseBw,46 gc5BaseBw,52 gc5BaseBw,67 gc5BaseBw,76 genscan,43 genscan,110 genscan,134 genscan,212 gold,43 gold,63 gold,89 gold,114 gold,144 microsat,27 microsat,55 microsat,64 microsat,81 mrna,54 mrna,83 mrna,122 mrna,148 mrna,159 mrna,195 mrna,264 mrna,367 mrna,426 ncbiRefSeqPsl,5 nestedRepeats,4 nestedRepeats,20 nestedRepeats,27 nestedRepeats,48 nestedRepeats,83 nestedRepeats,93 nestedRepeats,108 nestedRepeats,189 nestedRepeats,195 nestedRepeats,203 nestedRepeats,228 nestedRepeats,252 nestedRepeats,350 nestedRepeats,365 nestedRepeats,378 nestedRepeats,399 netHg38,17 netHg38,64 netHg38,182 netHg38,202 netHg38,255 netHg38,277 netHg38,360 netHg38,370 netHg38,488 netHg38,508 netHg38,643 netHg38,648 netHg38,666 netHg38,686 netHg38,886 netHg38,961 netHg38,983 netHg38,1007 netHg38,1021 netMm10,17 netMm10,64 netMm10,182 netMm10,202 netMm10,255 netMm10,277 netMm10,360 netMm10,370 netMm10,488 netMm10,508 netMm10,643 netMm10,648 netMm10,666 netMm10,686 netMm10,886 netMm10,961 netMm10,983 netMm10,1007 netMm10,1021 netTarSyr2,17 netTarSyr2,64 netTarSyr2,182 netTarSyr2,202 netTarSyr2,255 netTarSyr2,277 netTarSyr2,360 netTarSyr2,370 netTarSyr2,488 netTarSyr2,508 netTarSyr2,643 netTarSyr2,648 netTarSyr2,666 netTarSyr2,686 netTarSyr2,886 netTarSyr2,961 netTarSyr2,983 netTarSyr2,1007 netTarSyr2,1021 refSeqComposite,162 refSeqComposite,195 refSeqComposite,213 refSeqComposite,260 refSeqComposite,321 refSeqComposite,343 refSeqComposite,437 refSeqComposite,489 refSeqComposite,521 refSeqComposite,528 refSeqComposite,554 refSeqComposite,612 refSeqComposite,632 refSeqComposite,710 refSeqComposite,738 refSeqComposite,787 refSeqComposite,796 refSeqComposite,876 refSeqComposite,891 refSeqComposite,943 refSeqComposite,989 refSeqComposite,1007 refSeqComposite,1055 refSeqComposite,1243 refSeqComposite,1275 refSeqComposite,1348 refSeqComposite,1429 refSeqComposite,1431 refSeqComposite,1501 refSeqComposite,1571 refSeqComposite,1651 refSeqComposite,1697 refSeqComposite,1701 refSeqComposite,1807 rmsk,39 rmsk,59 rmsk,84 rmsk,151 rmsk,206 rmsk,216 rmsk,234 rmsk,246 rmsk,264 rmsk,373 rmsk,388 rmsk,401 rmsk,422 simpleRepeat,40 transMapEnsemblV5,85 transMapEnsemblV5,140 transMapEnsemblV5,169 transMapEnsemblV5,209 transMapEnsemblV5,275 transMapEnsemblV5,282 transMapEnsemblV5,298 transMapEnsemblV5,310 transMapEnsemblV5,323 transMapEnsemblV5,341 transMapEnsemblV5,360 transMapEnsemblV5,378 transMapEnsemblV5,457 transMapEnsemblV5,508 transMapEnsemblV5,551 transMapEnsemblV5,739 transMapEnsemblV5,804 transMapEstV5,54 transMapEstV5,109 transMapEstV5,138 transMapEstV5,178 transMapEstV5,244 transMapEstV5,251 transMapEstV5,267 transMapEstV5,279 transMapEstV5,292 transMapEstV5,310 transMapEstV5,329 transMapEstV5,347 transMapEstV5,426 transMapEstV5,477 transMapEstV5,520 transMapEstV5,708 transMapEstV5,773 transMapRefSeqV5,54 transMapRefSeqV5,109 transMapRefSeqV5,138 transMapRefSeqV5,178 transMapRefSeqV5,244 transMapRefSeqV5,251 transMapRefSeqV5,267 transMapRefSeqV5,279 transMapRefSeqV5,292 transMapRefSeqV5,310 transMapRefSeqV5,329 transMapRefSeqV5,347 transMapRefSeqV5,426 transMapRefSeqV5,477 transMapRefSeqV5,520 transMapRefSeqV5,708 transMapRefSeqV5,773 transMapRnaV5,54 transMapRnaV5,109 transMapRnaV5,138 transMapRnaV5,178 transMapRnaV5,244 transMapRnaV5,251 transMapRnaV5,267 transMapRnaV5,279 transMapRnaV5,292 transMapRnaV5,310 transMapRnaV5,329 transMapRnaV5,347 transMapRnaV5,426 transMapRnaV5,477 transMapRnaV5,520 transMapRnaV5,708 transMapRnaV5,773 transMapV5,55 transMapV5,215 transMapV5,244 transMapV5,284 transMapV5,350 transMapV5,357 transMapV5,373 transMapV5,385 transMapV5,398 transMapV5,416 transMapV5,435 transMapV5,453 transMapV5,532 transMapV5,583 transMapV5,626 transMapV5,814 transMapV5,879 unipAliSwissprot,5 unipAliTrembl,5 unipInterest,4 uniprot,83 uniprot,269 uniprot,298 uniprot,310 uniprot,385 uniprot,407 uniprot,420 uniprot,452 uniprot,465 uniprot,542 uniprot,561 uniprot,652 uniprot,677 uniprot,877 uniprot,902 uniprot,980 uniprot,1111 uniprot,1125 uniprot,1159 uniprot,1166 uniprot,1181 uniprot,1288 uniprot,1298 uniprot,1306 uniprot,1315 uniprot,1347 uniprot,1360 uniprot,1363 uniprot,1397 uniprot,1436 uniprot,1457 uniprot,1590 uniprot,1594 uniprot,1639 uniprot,1646 uniprot,1656 uniprot,1666 uniprot,1684 uniprot,1687 uniprot,1710 uniprot,1951 xenoMrna,18 xenoMrna,58 xenoMrna,76 xenoMrna,98 xenoMrna,108 xenoMrna,157 xenoMrna,196 xenoMrna,222 xenoMrna,233 xenoMrna,269 xenoMrna,338 xenoMrna,441 xenoMrna,500 xenoRefGene,63 xenoRefGene,82 xenoRefGene,96 xenoRefGene,121 xenoRefGene,233 xenoRefGene,265 xenoRefGene,377 off chainHg38,339 chainHg38,345 chainMm10,339 chainMm10,345 chainNetHg38,342 chainNetHg38,348 chainNetMm10,342 chainNetMm10,348 chainNetTarSyr2,342 chainNetTarSyr2,348 chainTarSyr2,339 chainTarSyr2,345 netHg38,339 netHg38,345 netMm10,339 netMm10,345 netTarSyr2,339 netTarSyr2,345 refSeqComposite,810 xenoRefGene,134 offers genscan,79 often HLTOGAannotvHg38v1,206 chainHg38,213 chainHg38,225 chainMm10,213 chainMm10,225 chainNetHg38,216 chainNetHg38,228 chainNetMm10,216 chainNetMm10,228 chainNetTarSyr2,216 chainNetTarSyr2,228 chainTarSyr2,213 chainTarSyr2,225 netHg38,213 netHg38,225 netMm10,213 netMm10,225 netTarSyr2,213 netTarSyr2,225 older uniprot,1560 uniprot,1647 omim refSeqComposite,784 refSeqComposite,803 omitted nestedRepeats,165 on HLTOGAannotvHg38v1,79 HLTOGAannotvHg38v1,295 augustusGene,29 augustusGene,37 augustusGene,151 chainHg38,327 chainHg38,353 chainHg38,456 chainHg38,470 chainHg38,520 chainHg38,525 chainHg38,540 chainHg38,773 chainMm10,327 chainMm10,353 chainMm10,456 chainMm10,470 chainMm10,520 chainMm10,525 chainMm10,540 chainMm10,773 chainNetHg38,330 chainNetHg38,356 chainNetHg38,459 chainNetHg38,473 chainNetHg38,523 chainNetHg38,528 chainNetHg38,543 chainNetHg38,776 chainNetMm10,330 chainNetMm10,356 chainNetMm10,459 chainNetMm10,473 chainNetMm10,523 chainNetMm10,528 chainNetMm10,543 chainNetMm10,776 chainNetTarSyr2,330 chainNetTarSyr2,356 chainNetTarSyr2,459 chainNetTarSyr2,473 chainNetTarSyr2,523 chainNetTarSyr2,528 chainNetTarSyr2,543 chainNetTarSyr2,776 chainTarSyr2,327 chainTarSyr2,353 chainTarSyr2,456 chainTarSyr2,470 chainTarSyr2,520 chainTarSyr2,525 chainTarSyr2,540 chainTarSyr2,773 cpgIslandExt,287 cpgIslandExt,323 cpgIslandExt,544 cpgIslandExt,551 cpgIslandExtUnmasked,5 cpgIslandExtUnmasked,290 cpgIslandExtUnmasked,326 cpgIslandExtUnmasked,547 cpgIslandExtUnmasked,554 cpgIslandSuper,287 cpgIslandSuper,323 cpgIslandSuper,544 cpgIslandSuper,551 ensGene,20 ensGene,118 ensGene,123 ensGene,129 ensGene,140 gap,86 genscan,27 genscan,52 mrna,178 mrna,227 nestedRepeats,141 nestedRepeats,176 nestedRepeats,277 netHg38,327 netHg38,353 netHg38,456 netHg38,470 netHg38,520 netHg38,525 netHg38,540 netHg38,773 netMm10,327 netMm10,353 netMm10,456 netMm10,470 netMm10,520 netMm10,525 netMm10,540 netMm10,773 netTarSyr2,327 netTarSyr2,353 netTarSyr2,456 netTarSyr2,470 netTarSyr2,520 netTarSyr2,525 netTarSyr2,540 netTarSyr2,773 refSeqComposite,132 refSeqComposite,182 refSeqComposite,239 refSeqComposite,253 refSeqComposite,361 refSeqComposite,517 refSeqComposite,570 refSeqComposite,976 refSeqComposite,1120 refSeqComposite,1601 refSeqComposite,1643 refSeqComposite,1681 refSeqComposite,1706 refSeqComposite,1775 rmsk,74 transMapEnsemblV5,570 transMapEnsemblV5,807 transMapEstV5,539 transMapEstV5,776 transMapRefSeqV5,539 transMapRefSeqV5,776 transMapRnaV5,539 transMapRnaV5,776 transMapV5,103 transMapV5,645 transMapV5,882 uniprot,19 uniprot,61 uniprot,129 uniprot,172 uniprot,232 uniprot,443 uniprot,482 uniprot,648 uniprot,728 uniprot,772 uniprot,809 uniprot,859 uniprot,1035 uniprot,1139 uniprot,1176 uniprot,1366 uniprot,1446 uniprot,1534 uniprot,1558 uniprot,1567 uniprot,1581 uniprot,1605 uniprot,1887 uniprot,2039 xenoMrna,252 xenoMrna,301 xenoRefGene,345 once mrna,212 uniprot,647 xenoMrna,286 one augustusGene,169 chainHg38,190 chainHg38,361 chainHg38,507 chainHg38,800 chainHg38,896 chainMm10,190 chainMm10,361 chainMm10,507 chainMm10,800 chainMm10,896 chainNetHg38,193 chainNetHg38,364 chainNetHg38,510 chainNetHg38,803 chainNetHg38,899 chainNetMm10,193 chainNetMm10,364 chainNetMm10,510 chainNetMm10,803 chainNetMm10,899 chainNetTarSyr2,193 chainNetTarSyr2,364 chainNetTarSyr2,510 chainNetTarSyr2,803 chainNetTarSyr2,899 chainTarSyr2,190 chainTarSyr2,361 chainTarSyr2,507 chainTarSyr2,800 chainTarSyr2,896 cpgIslandExt,233 cpgIslandExtUnmasked,236 cpgIslandSuper,233 mrna,119 mrna,230 mrna,263 netHg38,190 netHg38,361 netHg38,507 netHg38,800 netHg38,896 netMm10,190 netMm10,361 netMm10,507 netMm10,800 netMm10,896 netTarSyr2,190 netTarSyr2,361 netTarSyr2,507 netTarSyr2,800 netTarSyr2,896 transMapV5,78 uniprot,74 uniprot,77 uniprot,155 uniprot,981 uniprot,1098 uniprot,1638 xenoMrna,193 xenoMrna,304 xenoMrna,337 ones transMapEnsemblV5,50 uniprot,1041 ongoing uniprot,1569 only chainHg38,357 chainMm10,357 chainNetHg38,360 chainNetMm10,360 chainNetTarSyr2,360 chainTarSyr2,357 cpgIslandExt,196 cpgIslandExtUnmasked,199 cpgIslandSuper,196 microsat,61 mrna,103 mrna,243 mrna,316 mrna,417 netHg38,357 netMm10,357 netTarSyr2,357 refSeqComposite,158 refSeqComposite,218 refSeqComposite,235 refSeqComposite,247 refSeqComposite,516 refSeqComposite,568 refSeqComposite,1266 refSeqComposite,1538 transMapEnsemblV5,49 transMapEnsemblV5,653 transMapEstV5,622 transMapRefSeqV5,622 transMapRnaV5,622 transMapV5,728 uniprot,645 uniprot,975 uniprot,1178 uniprot,1302 uniprot,1804 xenoMrna,177 xenoMrna,317 xenoMrna,390 xenoMrna,490 xenoRefGene,210 xenoRefGene,256 oommen transMapEnsemblV5,731 transMapEstV5,700 transMapRefSeqV5,700 transMapRnaV5,700 transMapV5,806 open-3.0 nestedRepeats,331 rmsk,354 opin nestedRepeats,385 nestedRepeats,407 rmsk,408 rmsk,430 opposite chainHg38,552 chainMm10,552 chainNetHg38,555 chainNetMm10,555 chainNetTarSyr2,555 chainTarSyr2,552 netHg38,552 netMm10,552 netTarSyr2,552 option augustusGene,167 augustusGene,187 genscan,94 mrna,353 refSeqComposite,777 refSeqComposite,842 transMapEnsemblV5,135 transMapEstV5,104 transMapRefSeqV5,104 transMapRnaV5,104 transMapV5,210 xenoMrna,427 xenoRefGene,114 xenoRefGene,166 optional refSeqComposite,820 xenoRefGene,144 options gc5BaseBw,70 genscan,85 mrna,384 xenoMrna,458 or HLTOGAannotvHg38v1,39 HLTOGAannotvHg38v1,96 HLTOGAannotvHg38v1,264 chainHg38,30 chainHg38,129 chainHg38,152 chainHg38,185 chainHg38,491 chainHg38,868 chainHg38,897 chainMm10,30 chainMm10,129 chainMm10,152 chainMm10,185 chainMm10,491 chainMm10,868 chainMm10,897 chainNetHg38,33 chainNetHg38,132 chainNetHg38,155 chainNetHg38,188 chainNetHg38,494 chainNetHg38,871 chainNetHg38,900 chainNetMm10,33 chainNetMm10,132 chainNetMm10,155 chainNetMm10,188 chainNetMm10,494 chainNetMm10,871 chainNetMm10,900 chainNetTarSyr2,33 chainNetTarSyr2,132 chainNetTarSyr2,155 chainNetTarSyr2,188 chainNetTarSyr2,494 chainNetTarSyr2,871 chainNetTarSyr2,900 chainTarSyr2,30 chainTarSyr2,129 chainTarSyr2,152 chainTarSyr2,185 chainTarSyr2,491 chainTarSyr2,868 chainTarSyr2,897 cpgIslandExt,127 cpgIslandExt,266 cpgIslandExt,523 cpgIslandExtUnmasked,130 cpgIslandExtUnmasked,269 cpgIslandExtUnmasked,526 cpgIslandSuper,127 cpgIslandSuper,266 cpgIslandSuper,523 ensGene,68 ensGene,89 ensGene,110 mrna,120 mrna,255 mrna,274 mrna,283 ncbiRefSeqCurated,11 ncbiRefSeqOther,13 ncbiRefSeqPredicted,9 nestedRepeats,96 nestedRepeats,117 nestedRepeats,158 netHg38,30 netHg38,129 netHg38,152 netHg38,185 netHg38,491 netHg38,868 netHg38,897 netMm10,30 netMm10,129 netMm10,152 netMm10,185 netMm10,491 netMm10,868 netMm10,897 netTarSyr2,30 netTarSyr2,129 netTarSyr2,152 netTarSyr2,185 netTarSyr2,491 netTarSyr2,868 netTarSyr2,897 refSeqComposite,86 refSeqComposite,122 refSeqComposite,228 refSeqComposite,280 refSeqComposite,355 refSeqComposite,401 refSeqComposite,410 refSeqComposite,416 refSeqComposite,425 refSeqComposite,623 refSeqComposite,644 refSeqComposite,692 refSeqComposite,783 refSeqComposite,793 refSeqComposite,808 refSeqComposite,952 refSeqComposite,974 refSeqComposite,1053 refSeqComposite,1315 refSeqComposite,1330 refSeqComposite,1497 refSeqComposite,1519 rmsk,251 rmsk,280 transMapEnsemblV5,19 transMapEnsemblV5,534 transMapEnsemblV5,562 transMapEnsemblV5,605 transMapEnsemblV5,625 transMapEstV5,503 transMapEstV5,531 transMapEstV5,574 transMapEstV5,594 transMapRefSeqV5,503 transMapRefSeqV5,531 transMapRefSeqV5,574 transMapRefSeqV5,594 transMapRnaV5,503 transMapRnaV5,531 transMapRnaV5,574 transMapRnaV5,594 transMapV5,47 transMapV5,609 transMapV5,637 transMapV5,680 transMapV5,700 uniprot,317 uniprot,389 uniprot,436 uniprot,829 uniprot,888 uniprot,982 uniprot,1038 uniprot,1205 uniprot,1266 uniprot,1401 uniprot,1449 uniprot,1722 uniprot,1776 uniprot,1835 uniprot,1879 xenoMrna,94 xenoMrna,194 xenoMrna,329 xenoMrna,348 xenoMrna,357 xenoRefGene,132 order gap,80 gold,111 uniprot,872 organ mrna,144 mrna,150 xenoMrna,218 xenoMrna,224 organism chainHg38,336 chainHg38,366 chainMm10,336 chainMm10,366 chainNetHg38,339 chainNetHg38,369 chainNetMm10,339 chainNetMm10,369 chainNetTarSyr2,339 chainNetTarSyr2,369 chainTarSyr2,336 chainTarSyr2,366 netHg38,336 netHg38,366 netMm10,336 netMm10,366 netTarSyr2,336 netTarSyr2,366 organisms chainHg38,913 chainMm10,913 chainNetHg38,916 chainNetMm10,916 chainNetTarSyr2,916 chainTarSyr2,913 nestedRepeats,295 netHg38,913 netMm10,913 netTarSyr2,913 rmsk,302 transMapEnsemblV5,160 transMapEnsemblV5,218 transMapEstV5,129 transMapEstV5,187 transMapRefSeqV5,129 transMapRefSeqV5,187 transMapRnaV5,129 transMapRnaV5,187 transMapV5,65 transMapV5,153 transMapV5,235 transMapV5,293 uniprot,998 xenoMrna,26 xenoRefGene,21 organized refSeqComposite,1378 organizes chainHg38,621 chainMm10,621 chainNetHg38,624 chainNetMm10,624 chainNetTarSyr2,624 chainTarSyr2,621 netHg38,621 netMm10,621 netTarSyr2,621 orientation chainHg38,553 chainMm10,553 chainNetHg38,556 chainNetMm10,556 chainNetTarSyr2,556 chainTarSyr2,553 cytoBandIdeo,6 gap,82 gold,113 netHg38,553 netMm10,553 netTarSyr2,553 xenoMrna,75 xenoMrna,97 orientations xenoMrna,107 origin nestedRepeats,398 rmsk,421 original nestedRepeats,84 orthologous HLTOGAannotvHg38v1,121 transMapEnsemblV5,87 transMapEstV5,56 transMapRefSeqV5,56 transMapRnaV5,56 transMapV5,57 orthologs HLTOGAannotvHg38v1,20 HLTOGAannotvHg38v1,33 HLTOGAannotvHg38v1,93 chainHg38,290 chainMm10,290 chainNetHg38,293 chainNetMm10,293 chainNetTarSyr2,293 chainTarSyr2,290 netHg38,290 netMm10,290 netTarSyr2,290 transMapV5,95 orthology HLTOGAannotvHg38v1,303 HLTOGAannotvHg38v1,360 osipova HLTOGAannotvHg38v1,338 ostell mrna,474 mrna,498 xenoMrna,548 xenoMrna,572 other augustusGene,208 chainHg38,24 chainHg38,418 chainHg38,511 chainMm10,24 chainMm10,418 chainMm10,511 chainNetHg38,27 chainNetHg38,421 chainNetHg38,514 chainNetMm10,27 chainNetMm10,421 chainNetMm10,514 chainNetTarSyr2,27 chainNetTarSyr2,421 chainNetTarSyr2,514 chainTarSyr2,24 chainTarSyr2,418 chainTarSyr2,511 cpgIslandExt,135 cpgIslandExtUnmasked,138 cpgIslandSuper,135 ncbiRefSeqOther,2 ncbiRefSeqOther,5 nestedRepeats,376 netHg38,24 netHg38,418 netHg38,511 netMm10,24 netMm10,418 netMm10,511 netTarSyr2,24 netTarSyr2,418 netTarSyr2,511 refSeqComposite,275 refSeqComposite,379 refSeqComposite,382 refSeqComposite,1372 refSeqComposite,1398 rmsk,195 rmsk,399 transMapEnsemblV5,30 transMapEnsemblV5,46 transMapEnsemblV5,371 transMapEstV5,28 transMapEstV5,340 transMapRefSeqV5,28 transMapRefSeqV5,340 transMapRnaV5,28 transMapRnaV5,340 transMapV5,27 transMapV5,446 unipOther,1 unipOther,4 uniprot,90 uniprot,122 uniprot,205 uniprot,319 uniprot,393 uniprot,396 uniprot,862 uniprot,1200 xenoMrna,1 xenoMrna,27 xenoRefGene,1 xenoRefGene,22 others cpgIslandExt,247 cpgIslandExtUnmasked,250 cpgIslandSuper,247 nestedRepeats,214 uniprot,1312 uniprot,1344 otherwise cpgIslandExt,185 cpgIslandExtUnmasked,188 cpgIslandSuper,185 transMapEnsemblV5,248 transMapEstV5,217 transMapRefSeqV5,217 transMapRnaV5,217 transMapV5,323 ouml augustusGene,269 our augustusGene,43 cpgIslandExt,536 cpgIslandExt,545 cpgIslandExt,552 cpgIslandExtUnmasked,539 cpgIslandExtUnmasked,548 cpgIslandExtUnmasked,555 cpgIslandSuper,536 cpgIslandSuper,545 cpgIslandSuper,552 ensGene,26 ensGene,84 ensGene,91 ensGene,113 ensGene,124 ensGene,130 ensGene,141 genscan,58 refSeqComposite,138 refSeqComposite,1326 refSeqComposite,1333 refSeqComposite,1349 refSeqComposite,1364 refSeqComposite,1488 refSeqComposite,1508 refSeqComposite,1629 refSeqComposite,1682 refSeqComposite,1689 refSeqComposite,1707 rmsk,124 rmsk,129 transMapEnsemblV5,559 transMapEnsemblV5,565 transMapEnsemblV5,575 transMapEnsemblV5,614 transMapEstV5,528 transMapEstV5,534 transMapEstV5,544 transMapEstV5,583 transMapRefSeqV5,528 transMapRefSeqV5,534 transMapRefSeqV5,544 transMapRefSeqV5,583 transMapRnaV5,528 transMapRnaV5,534 transMapRnaV5,544 transMapRnaV5,583 transMapV5,634 transMapV5,640 transMapV5,650 transMapV5,689 uniprot,891 uniprot,1697 uniprot,1765 uniprot,1829 uniprot,1836 uniprot,1870 uniprot,1874 out chainHg38,642 chainMm10,642 chainNetHg38,645 chainNetMm10,645 chainNetTarSyr2,645 chainTarSyr2,642 netHg38,642 netMm10,642 netTarSyr2,642 output cpgIslandExt,499 cpgIslandExtUnmasked,502 cpgIslandSuper,499 nestedRepeats,26 nestedRepeats,110 windowmaskerSdust,63 windowmaskerSdust,72 outputs rmsk,35 outside refSeqComposite,690 uniprot,558 over chainHg38,198 chainHg38,657 chainMm10,198 chainMm10,657 chainNetHg38,201 chainNetHg38,660 chainNetMm10,201 chainNetMm10,660 chainNetTarSyr2,201 chainNetTarSyr2,660 chainTarSyr2,198 chainTarSyr2,657 cpgIslandExt,97 cpgIslandExtUnmasked,100 cpgIslandSuper,97 netHg38,198 netHg38,657 netMm10,198 netMm10,657 netTarSyr2,198 netTarSyr2,657 refSeqComposite,1035 uniprot,522 uniprot,536 overlapping chainHg38,114 chainHg38,178 chainMm10,114 chainMm10,178 chainNetHg38,117 chainNetHg38,181 chainNetMm10,117 chainNetMm10,181 chainNetTarSyr2,117 chainNetTarSyr2,181 chainTarSyr2,114 chainTarSyr2,178 netHg38,114 netHg38,178 netMm10,114 netMm10,178 netTarSyr2,114 netTarSyr2,178 own uniprot,724 p genscan,205 nestedRepeats,329 rmsk,352 pac chainHg38,1041 chainMm10,1041 chainNetHg38,1044 chainNetMm10,1044 chainNetTarSyr2,1044 chainTarSyr2,1041 netHg38,1041 netMm10,1041 netTarSyr2,1041 pack chainHg38,235 chainMm10,235 chainNetHg38,238 chainNetMm10,238 chainNetTarSyr2,238 chainTarSyr2,235 nestedRepeats,116 netHg38,235 netMm10,235 netTarSyr2,235 page cpgIslandExt,223 cpgIslandExt,547 cpgIslandExtUnmasked,226 cpgIslandExtUnmasked,550 cpgIslandSuper,223 cpgIslandSuper,547 ensGene,127 ensGene,166 genscan,78 genscan,123 mrna,59 mrna,364 mrna,385 refSeqComposite,114 refSeqComposite,742 refSeqComposite,867 refSeqComposite,1127 refSeqComposite,1646 rmsk,77 uniprot,236 uniprot,651 uniprot,1158 uniprot,1585 uniprot,2027 xenoMrna,133 xenoMrna,438 xenoMrna,459 xenoRefGene,100 xenoRefGene,191 pages chainHg38,778 chainMm10,778 chainNetHg38,781 chainNetMm10,781 chainNetTarSyr2,781 chainTarSyr2,778 netHg38,778 netMm10,778 netTarSyr2,778 pair gap,96 pairwise chainHg38,1019 chainHg38,1037 chainMm10,1019 chainMm10,1037 chainNetHg38,1022 chainNetHg38,1040 chainNetMm10,1022 chainNetMm10,1040 chainNetTarSyr2,1022 chainNetTarSyr2,1040 chainTarSyr2,1019 chainTarSyr2,1037 netHg38,1019 netHg38,1037 netMm10,1019 netMm10,1037 netTarSyr2,1019 netTarSyr2,1037 transMapEnsemblV5,339 transMapEstV5,308 transMapRefSeqV5,308 transMapRnaV5,308 transMapV5,84 transMapV5,414 paradigm HLTOGAannotvHg38v1,76 paralogous transMapEnsemblV5,302 transMapEstV5,271 transMapRefSeqV5,271 transMapRnaV5,271 transMapV5,377 paralogs HLTOGAannotvHg38v1,95 chainHg38,228 chainMm10,228 chainNetHg38,231 chainNetMm10,231 chainNetTarSyr2,231 chainTarSyr2,228 netHg38,228 netMm10,228 netTarSyr2,228 transMapV5,161 parameters windowmaskerSdust,57 parent cpgIslandExt,83 cpgIslandExtUnmasked,86 cpgIslandSuper,83 parenthesis gold,148 part chainHg38,276 chainMm10,276 chainNetHg38,279 chainNetMm10,279 chainNetTarSyr2,279 chainTarSyr2,276 netHg38,276 netMm10,276 netTarSyr2,276 refSeqComposite,527 partially HLTOGAannotvHg38v1,165 particular augustusGene,234 chainHg38,200 chainMm10,200 chainNetHg38,203 chainNetMm10,203 chainNetTarSyr2,203 chainTarSyr2,200 netHg38,200 netMm10,200 netTarSyr2,200 refSeqComposite,297 uniprot,1019 particularly cpgIslandExt,21 cpgIslandExtUnmasked,24 cpgIslandSuper,21 parts HLTOGAannotvHg38v1,200 chainHg38,39 chainHg38,50 chainMm10,39 chainMm10,50 chainNetHg38,42 chainNetHg38,53 chainNetMm10,42 chainNetMm10,53 chainNetTarSyr2,42 chainNetTarSyr2,53 chainTarSyr2,39 chainTarSyr2,50 netHg38,39 netHg38,50 netMm10,39 netMm10,50 netTarSyr2,39 netTarSyr2,50 xenoMrna,70 past uniprot,1690 patch uniprot,1423 patches uniprot,1432 patterns augustusGene,56 pennsylvania chainHg38,924 chainHg38,1027 chainMm10,924 chainMm10,1027 chainNetHg38,927 chainNetHg38,1030 chainNetMm10,927 chainNetMm10,1030 chainNetTarSyr2,927 chainNetTarSyr2,1030 chainTarSyr2,924 chainTarSyr2,1027 netHg38,924 netHg38,1027 netMm10,924 netMm10,1027 netTarSyr2,924 netTarSyr2,1027 peptide unipLocSignal,2 uniprot,477 uniprot,565 peptides unipLocSignal,5 uniprot,239 uniprot,512 percent gc5BaseBw,2 gc5BaseBw,4 gc5BaseBw,14 percentage cpgIslandExt,345 cpgIslandExtUnmasked,348 cpgIslandSuper,345 gc5BaseBw,18 perfect microsat,31 performed cpgIslandExt,405 cpgIslandExtUnmasked,408 cpgIslandSuper,405 perhaps cpgIslandExt,137 cpgIslandExtUnmasked,140 cpgIslandSuper,137 period microsat,65 permitted rmsk,314 ph.d chainHg38,1024 chainMm10,1024 chainNetHg38,1027 chainNetMm10,1027 chainNetTarSyr2,1027 chainTarSyr2,1024 netHg38,1024 netMm10,1024 netTarSyr2,1024 pharmaceuticals uniprot,1969 phenotype uniprot,432 phosphorylation uniprot,590 phylofit transMapEnsemblV5,230 transMapEstV5,199 transMapRefSeqV5,199 transMapRnaV5,199 transMapV5,305 pia uniprot,1971 pick uniprot,1089 pipeline refSeqComposite,1193 uniprot,1537 pipelines uniprot,1850 place chainHg38,797 chainMm10,797 chainNetHg38,800 chainNetMm10,800 chainNetTarSyr2,800 chainTarSyr2,797 netHg38,797 netMm10,797 netTarSyr2,797 placed chainHg38,839 chainMm10,839 chainNetHg38,842 chainNetMm10,842 chainNetTarSyr2,842 chainTarSyr2,839 netHg38,839 netMm10,839 netTarSyr2,839 placement refSeqComposite,968 places mrna,407 refSeqComposite,1256 xenoMrna,480 xenoRefGene,246 please ensGene,41 ensGene,160 refSeqComposite,103 refSeqComposite,1113 refSeqComposite,1686 uniprot,685 uniprot,1439 uniprot,1826 plos transMapEnsemblV5,811 transMapEstV5,780 transMapRefSeqV5,780 transMapRnaV5,780 transMapV5,886 plus refSeqComposite,902 pmc HLTOGAannotvHg38v1,373 chainHg38,1086 chainHg38,1117 chainMm10,1086 chainMm10,1117 chainNetHg38,1089 chainNetHg38,1120 chainNetMm10,1089 chainNetMm10,1120 chainNetTarSyr2,1089 chainNetTarSyr2,1120 chainTarSyr2,1086 chainTarSyr2,1117 ensGene,206 microsat,136 mrna,490 mrna,516 mrna,534 netHg38,1086 netHg38,1117 netMm10,1086 netMm10,1117 netTarSyr2,1086 netTarSyr2,1117 refSeqComposite,1748 refSeqComposite,1790 refSeqComposite,1824 simpleRepeat,96 transMapEnsemblV5,755 transMapEnsemblV5,821 transMapEstV5,724 transMapEstV5,790 transMapRefSeqV5,724 transMapRefSeqV5,790 transMapRnaV5,724 transMapRnaV5,790 transMapV5,830 transMapV5,896 uniprot,2008 xenoMrna,564 xenoMrna,590 xenoMrna,608 xenoRefGene,318 xenoRefGene,360 xenoRefGene,394 pmc10193443 HLTOGAannotvHg38v1,374 pmc148217 microsat,137 simpleRepeat,97 pmc187518 mrna,535 refSeqComposite,1749 xenoMrna,609 xenoRefGene,319 pmc208784 chainHg38,1087 chainMm10,1087 chainNetHg38,1090 chainNetMm10,1090 chainNetTarSyr2,1090 chainTarSyr2,1087 netHg38,1087 netMm10,1087 netTarSyr2,1087 pmc2099585 transMapEnsemblV5,756 transMapEstV5,725 transMapRefSeqV5,725 transMapRnaV5,725 transMapV5,831 pmc2134963 transMapEnsemblV5,822 transMapEstV5,791 transMapRefSeqV5,791 transMapRnaV5,791 transMapV5,897 pmc308779 mrna,517 xenoMrna,591 pmc3245120 uniprot,2009 pmc3531190 mrna,491 xenoMrna,565 pmc3965018 refSeqComposite,1791 xenoRefGene,361 pmc430961 chainHg38,1118 chainMm10,1118 chainNetHg38,1121 chainNetMm10,1121 chainNetTarSyr2,1121 chainTarSyr2,1118 netHg38,1118 netMm10,1118 netTarSyr2,1118 pmc539979 refSeqComposite,1825 xenoRefGene,395 pmc99161 ensGene,207 pmid HLTOGAannotvHg38v1,371 augustusGene,314 augustusGene,339 chainHg38,1046 chainHg38,1084 chainHg38,1115 chainMm10,1046 chainMm10,1084 chainMm10,1115 chainNetHg38,1049 chainNetHg38,1087 chainNetHg38,1118 chainNetMm10,1049 chainNetMm10,1087 chainNetMm10,1118 chainNetTarSyr2,1049 chainNetTarSyr2,1087 chainNetTarSyr2,1118 chainTarSyr2,1046 chainTarSyr2,1084 chainTarSyr2,1115 cpgIslandExt,622 cpgIslandExtUnmasked,625 cpgIslandSuper,622 ensGene,204 genscan,229 microsat,134 mrna,488 mrna,514 mrna,532 nestedRepeats,360 nestedRepeats,393 nestedRepeats,415 netHg38,1046 netHg38,1084 netHg38,1115 netMm10,1046 netMm10,1084 netMm10,1115 netTarSyr2,1046 netTarSyr2,1084 netTarSyr2,1115 refSeqComposite,1746 refSeqComposite,1788 refSeqComposite,1822 rmsk,383 rmsk,416 rmsk,438 simpleRepeat,94 transMapEnsemblV5,753 transMapEnsemblV5,785 transMapEnsemblV5,819 transMapEstV5,722 transMapEstV5,754 transMapEstV5,788 transMapRefSeqV5,722 transMapRefSeqV5,754 transMapRefSeqV5,788 transMapRnaV5,722 transMapRnaV5,754 transMapRnaV5,788 transMapV5,828 transMapV5,860 transMapV5,894 uniprot,2006 uniprot,2050 windowmaskerSdust,113 xenoMrna,562 xenoMrna,588 xenoMrna,606 xenoRefGene,316 xenoRefGene,358 xenoRefGene,392 point rmsk,269 poly-a augustusGene,62 polymorphic microsat,41 simpleRepeat,46 polypeptide unipChain,6 uniprot,287 uniprot,289 population microsat,44 position chainHg38,713 chainMm10,713 chainNetHg38,716 chainNetMm10,716 chainNetTarSyr2,716 chainTarSyr2,713 netHg38,713 netMm10,713 netTarSyr2,713 refSeqComposite,987 uniprot,610 positions HLTOGAannotvHg38v1,109 uniprot,1495 possible chainHg38,412 chainMm10,412 chainNetHg38,415 chainNetMm10,415 chainNetTarSyr2,415 chainTarSyr2,412 netHg38,412 netMm10,412 netTarSyr2,412 refSeqComposite,186 uniprot,601 possibly chainHg38,289 chainMm10,289 chainNetHg38,292 chainNetMm10,292 chainNetTarSyr2,292 chainTarSyr2,289 netHg38,289 netMm10,289 netTarSyr2,289 simpleRepeat,18 post-alignment transMapEnsemblV5,305 transMapEstV5,274 transMapRefSeqV5,274 transMapRnaV5,274 transMapV5,380 post-processing uniprot,295 potential cpgIslandExt,175 cpgIslandExtUnmasked,178 cpgIslandSuper,175 pre-mrna genscan,185 precompiled refSeqComposite,1523 transMapEnsemblV5,629 transMapEstV5,598 transMapRefSeqV5,598 transMapRnaV5,598 transMapV5,704 uniprot,1780 predicted cpgIslandExt,228 cpgIslandExtUnmasked,231 cpgIslandSuper,228 ncbiRefSeq,8 ncbiRefSeqPredicted,2 ncbiRefSeqPredicted,6 refSeqComposite,204 refSeqComposite,340 refSeqComposite,359 refSeqComposite,404 refSeqComposite,593 refSeqComposite,619 refSeqComposite,695 refSeqComposite,715 refSeqComposite,1416 refSeqComposite,1676 uniprot,48 uniprot,193 xenoMrna,114 xenoRefGene,70 prediction augustusGene,321 genscan,73 genscan,211 refSeqComposite,376 refSeqComposite,604 transMapEnsemblV5,84 transMapEstV5,53 transMapRefSeqV5,53 transMapRnaV5,53 transMapV5,54 xenoRefGene,55 predictions HLTOGAannotvHg38v1,14 augustusGene,6 augustusGene,11 augustusGene,18 augustusGene,26 augustusGene,191 ensGene,8 ensGene,12 ensGene,40 genscan,5 genscan,9 genscan,14 genscan,24 genscan,112 genscan,118 ncbiRefSeq,18 ncbiRefSeqCurated,16 ncbiRefSeqGenomicDiff,15 ncbiRefSeqOther,18 ncbiRefSeqPredicted,14 ncbiRefSeqPsl,10 refSeqComposite,10 refSeqComposite,833 refSeqComposite,862 transMapEnsemblV5,13 transMapEstV5,11 transMapRefSeqV5,12 transMapRnaV5,12 transMapV5,10 unipAliSwissprot,21 unipAliTrembl,13 unipChain,11 unipConflict,9 unipDisulfBond,9 unipDomain,7 unipInterest,9 unipLocCytopl,8 unipLocExtra,8 unipLocSignal,9 unipLocTransMemb,8 unipModif,10 unipMut,9 unipOther,9 unipRepeat,7 unipStruct,11 uniprot,10 xenoRefGene,10 xenoRefGene,157 xenoRefGene,186 prepared HLTOGAannotvHg38v1,318 gc5BaseBw,80 ucscToINSDC,49 ucscToRefSeq,43 uniprot,712 present HLTOGAannotvHg38v1,152 HLTOGAannotvHg38v1,172 HLTOGAannotvHg38v1,219 HLTOGAannotvHg38v1,278 cpgIslandExt,154 cpgIslandExtUnmasked,157 cpgIslandSuper,154 rmsk,44 presentation gc5BaseBw,75 pressure cpgIslandExt,123 cpgIslandExtUnmasked,126 cpgIslandSuper,123 previous ensGene,132 refSeqComposite,1224 refSeqComposite,1340 refSeqComposite,1695 uniprot,1654 previously chainHg38,917 chainMm10,917 chainNetHg38,920 chainNetMm10,920 chainNetTarSyr2,920 chainTarSyr2,917 netHg38,917 netMm10,917 netTarSyr2,917 refSeqComposite,504 primary unipStruct,4 uniprot,360 principal gap,121 pringle transMapEnsemblV5,795 transMapEstV5,764 transMapRefSeqV5,764 transMapRnaV5,764 transMapV5,870 printf cpgIslandExt,435 cpgIslandExtUnmasked,438 cpgIslandSuper,435 problem uniprot,1359 uniprot,1389 proc chainHg38,1071 chainMm10,1071 chainNetHg38,1074 chainNetMm10,1074 chainNetTarSyr2,1074 chainTarSyr2,1071 netHg38,1071 netMm10,1071 netTarSyr2,1071 procedure uniprot,990 procedures gap,23 gold,25 process chainHg38,821 chainMm10,821 chainNetHg38,824 chainNetMm10,824 chainNetTarSyr2,824 chainTarSyr2,821 netHg38,821 netMm10,821 netTarSyr2,821 refSeqComposite,651 uniprot,321 uniprot,879 uniprot,905 uniprot,1229 uniprot,1448 processed HLTOGAannotvHg38v1,97 chainHg38,216 chainMm10,216 chainNetHg38,219 chainNetMm10,219 chainNetTarSyr2,219 chainTarSyr2,216 netHg38,216 netMm10,216 netTarSyr2,216 processing refSeqComposite,1338 produced mrna,446 refSeqComposite,384 refSeqComposite,1715 transMapEnsemblV5,22 transMapEnsemblV5,680 transMapEnsemblV5,704 transMapEstV5,20 transMapEstV5,649 transMapEstV5,673 transMapRefSeqV5,20 transMapRefSeqV5,649 transMapRefSeqV5,673 transMapRnaV5,20 transMapRnaV5,649 transMapRnaV5,673 transMapV5,19 transMapV5,142 transMapV5,755 transMapV5,779 xenoMrna,83 xenoMrna,520 xenoRefGene,284 produces refSeqComposite,49 products unipChain,5 program augustusGene,21 augustusGene,257 chainHg38,612 chainHg38,653 chainHg38,791 chainHg38,844 chainHg38,876 chainHg38,952 chainHg38,955 chainMm10,612 chainMm10,653 chainMm10,791 chainMm10,844 chainMm10,876 chainMm10,952 chainMm10,955 chainNetHg38,615 chainNetHg38,656 chainNetHg38,794 chainNetHg38,847 chainNetHg38,879 chainNetHg38,955 chainNetHg38,958 chainNetMm10,615 chainNetMm10,656 chainNetMm10,794 chainNetMm10,847 chainNetMm10,879 chainNetMm10,955 chainNetMm10,958 chainNetTarSyr2,615 chainNetTarSyr2,656 chainNetTarSyr2,794 chainNetTarSyr2,847 chainNetTarSyr2,879 chainNetTarSyr2,955 chainNetTarSyr2,958 chainTarSyr2,612 chainTarSyr2,653 chainTarSyr2,791 chainTarSyr2,844 chainTarSyr2,876 chainTarSyr2,952 chainTarSyr2,955 cpgIslandExt,559 cpgIslandExt,569 cpgIslandExt,594 cpgIslandExtUnmasked,562 cpgIslandExtUnmasked,572 cpgIslandExtUnmasked,597 cpgIslandSuper,559 cpgIslandSuper,569 cpgIslandSuper,594 genscan,18 genscan,137 genscan,178 microsat,100 microsat,120 mrna,399 nestedRepeats,30 netHg38,612 netHg38,653 netHg38,791 netHg38,844 netHg38,876 netHg38,952 netHg38,955 netMm10,612 netMm10,653 netMm10,791 netMm10,844 netMm10,876 netMm10,952 netMm10,955 netTarSyr2,612 netTarSyr2,653 netTarSyr2,791 netTarSyr2,844 netTarSyr2,876 netTarSyr2,952 netTarSyr2,955 rmsk,20 rmsk,34 simpleRepeat,62 simpleRepeat,80 transMapEnsemblV5,315 transMapEstV5,284 transMapRefSeqV5,284 transMapRnaV5,284 transMapV5,390 uniprot,1529 programmatic ensGene,99 programmatically refSeqComposite,1324 programs chainHg38,1001 chainMm10,1001 chainNetHg38,1004 chainNetMm10,1004 chainNetTarSyr2,1004 chainTarSyr2,1001 netHg38,1001 netMm10,1001 netTarSyr2,1001 uniprot,1877 project ensGene,194 refSeqComposite,1162 refSeqComposite,1730 xenoRefGene,301 projected uniprot,800 projection transMapEnsemblV5,57 transMapEnsemblV5,322 transMapEstV5,291 transMapRefSeqV5,291 transMapRnaV5,291 transMapV5,397 projects transMapEnsemblV5,712 transMapEstV5,681 transMapRefSeqV5,681 transMapRnaV5,681 transMapV5,787 promoter cpgIslandExt,40 cpgIslandExtUnmasked,43 cpgIslandSuper,40 pronounced uniprot,1392 proofreading cpgIslandExt,93 cpgIslandExtUnmasked,96 cpgIslandSuper,93 properties refSeqComposite,722 prot.bed uniprot,1931 uniprot,1933 protein HLTOGAannotvHg38v1,270 HLTOGAannotvHg38v1,293 HLTOGAannotvHg38v1,308 HLTOGAannotvHg38v1,311 refSeqComposite,269 refSeqComposite,362 unipChain,4 unipStruct,3 uniprot,5 uniprot,15 uniprot,84 uniprot,95 uniprot,111 uniprot,113 uniprot,137 uniprot,153 uniprot,194 uniprot,196 uniprot,252 uniprot,256 uniprot,267 uniprot,278 uniprot,293 uniprot,324 uniprot,359 uniprot,635 uniprot,672 uniprot,742 uniprot,760 uniprot,780 uniprot,790 uniprot,906 uniprot,916 uniprot,954 uniprot,966 uniprot,970 uniprot,1020 uniprot,1037 uniprot,1072 uniprot,1099 uniprot,1218 uniprot,1241 uniprot,1244 uniprot,1333 uniprot,1607 uniprot,1635 uniprot,1854 uniprot,1888 uniprot,1989 uniprot,1994 uniprot,2041 xenoMrna,82 xenoMrna,115 protein-coding augustusGene,73 refSeqComposite,21 refSeqComposite,237 refSeqComposite,543 xenoRefGene,16 xenoRefGene,199 protein-genome uniprot,875 uniprot,1174 protein-protein uniprot,315 protein-to-genome uniprot,1703 proteins HLTOGAannotvHg38v1,163 HLTOGAannotvHg38v1,193 refSeqComposite,1811 unipAliSwissprot,7 unipAliTrembl,7 uniprot,243 uniprot,744 uniprot,925 uniprot,929 uniprot,1005 uniprot,1188 uniprot,1364 uniprot,1385 uniprot,1404 uniprot,1470 xenoRefGene,381 protocadherin refSeqComposite,417 provide uniprot,1860 provided refSeqComposite,38 refSeqComposite,69 refSeqComposite,206 refSeqComposite,445 uniprot,817 provides HLTOGAannotvHg38v1,298 gap,33 gold,35 uniprot,489 providing augustusGene,254 ensGene,153 genscan,175 nestedRepeats,312 rmsk,335 provisional refSeqComposite,621 refSeqComposite,670 xenoRefGene,72 pruitt refSeqComposite,1750 refSeqComposite,1792 xenoRefGene,320 xenoRefGene,362 pseudogenes HLTOGAannotvHg38v1,98 chainHg38,217 chainHg38,231 chainMm10,217 chainMm10,231 chainNetHg38,220 chainNetHg38,234 chainNetMm10,220 chainNetMm10,234 chainNetTarSyr2,220 chainNetTarSyr2,234 chainTarSyr2,217 chainTarSyr2,231 netHg38,217 netHg38,231 netMm10,217 netMm10,231 netTarSyr2,217 netTarSyr2,231 refSeqComposite,409 uniprot,1184 psl mrna,38 refSeqComposite,455 refSeqComposite,1179 refSeqComposite,1421 transMapEnsemblV5,103 transMapEstV5,72 transMapRefSeqV5,72 transMapRnaV5,72 transMapV5,178 uniprot,1479 xenoMrna,42 pslcdnafilter transMapEnsemblV5,354 transMapEstV5,323 transMapRefSeqV5,323 transMapRnaV5,323 transMapV5,429 pslmap transMapEnsemblV5,314 transMapEstV5,283 transMapRefSeqV5,283 transMapRnaV5,283 transMapV5,389 uniprot,889 uniprot,1497 uniprot,1528 uniprot,1880 uniprot,1900 pslreps uniprot,1482 uniprot,1502 public cpgIslandExt,537 cpgIslandExtUnmasked,540 cpgIslandSuper,537 ensGene,114 mrna,457 refSeqComposite,1327 refSeqComposite,1630 transMapEnsemblV5,696 transMapEstV5,665 transMapRefSeqV5,665 transMapRnaV5,665 transMapV5,771 uniprot,709 xenoMrna,531 publications refSeqComposite,254 refSeqComposite,424 uniprot,38 publicly nestedRepeats,275 pull-down refSeqComposite,849 xenoRefGene,173 purpose simpleRepeat,32 q uniprot,1904 uniprot,1914 q99697 uniprot,1926 qgap chainHg38,725 chainMm10,725 chainNetHg38,728 chainNetMm10,728 chainNetTarSyr2,728 chainTarSyr2,725 netHg38,725 netMm10,725 netTarSyr2,725 quality mrna,56 xenoMrna,60 queried cpgIslandExt,533 cpgIslandExtUnmasked,536 cpgIslandSuper,533 ensGene,105 transMapEnsemblV5,563 transMapEstV5,532 transMapRefSeqV5,532 transMapRnaV5,532 transMapV5,638 query HLTOGAannotvHg38v1,70 HLTOGAannotvHg38v1,126 HLTOGAannotvHg38v1,175 HLTOGAannotvHg38v1,222 rmsk,47 rmsk,61 uniprot,1484 xenoMrna,78 questions refSeqComposite,1694 uniprot,1834 quickly mrna,341 refSeqComposite,828 transMapEnsemblV5,123 transMapEstV5,92 transMapRefSeqV5,92 transMapRnaV5,92 transMapV5,198 xenoMrna,415 xenoRefGene,152 quite simpleRepeat,45 quot chainHg38,26 chainHg38,28 chainHg38,33 chainHg38,35 chainHg38,103 chainHg38,105 chainHg38,234 chainHg38,236 chainHg38,238 chainHg38,240 chainHg38,344 chainHg38,346 chainHg38,687 chainHg38,689 chainMm10,26 chainMm10,28 chainMm10,33 chainMm10,35 chainMm10,103 chainMm10,105 chainMm10,234 chainMm10,236 chainMm10,238 chainMm10,240 chainMm10,344 chainMm10,346 chainMm10,687 chainMm10,689 chainNetHg38,29 chainNetHg38,31 chainNetHg38,36 chainNetHg38,38 chainNetHg38,106 chainNetHg38,108 chainNetHg38,237 chainNetHg38,239 chainNetHg38,241 chainNetHg38,243 chainNetHg38,347 chainNetHg38,349 chainNetHg38,690 chainNetHg38,692 chainNetMm10,29 chainNetMm10,31 chainNetMm10,36 chainNetMm10,38 chainNetMm10,106 chainNetMm10,108 chainNetMm10,237 chainNetMm10,239 chainNetMm10,241 chainNetMm10,243 chainNetMm10,347 chainNetMm10,349 chainNetMm10,690 chainNetMm10,692 chainNetTarSyr2,29 chainNetTarSyr2,31 chainNetTarSyr2,36 chainNetTarSyr2,38 chainNetTarSyr2,106 chainNetTarSyr2,108 chainNetTarSyr2,237 chainNetTarSyr2,239 chainNetTarSyr2,241 chainNetTarSyr2,243 chainNetTarSyr2,347 chainNetTarSyr2,349 chainNetTarSyr2,690 chainNetTarSyr2,692 chainTarSyr2,26 chainTarSyr2,28 chainTarSyr2,33 chainTarSyr2,35 chainTarSyr2,103 chainTarSyr2,105 chainTarSyr2,234 chainTarSyr2,236 chainTarSyr2,238 chainTarSyr2,240 chainTarSyr2,344 chainTarSyr2,346 chainTarSyr2,687 chainTarSyr2,689 gc5BaseBw,58 gc5BaseBw,62 mrna,187 mrna,189 mrna,238 mrna,240 mrna,254 mrna,256 mrna,290 mrna,292 mrna,307 mrna,309 netHg38,26 netHg38,28 netHg38,33 netHg38,35 netHg38,103 netHg38,105 netHg38,234 netHg38,236 netHg38,238 netHg38,240 netHg38,344 netHg38,346 netHg38,687 netHg38,689 netMm10,26 netMm10,28 netMm10,33 netMm10,35 netMm10,103 netMm10,105 netMm10,234 netMm10,236 netMm10,238 netMm10,240 netMm10,344 netMm10,346 netMm10,687 netMm10,689 netTarSyr2,26 netTarSyr2,28 netTarSyr2,33 netTarSyr2,35 netTarSyr2,103 netTarSyr2,105 netTarSyr2,234 netTarSyr2,236 netTarSyr2,238 netTarSyr2,240 netTarSyr2,344 netTarSyr2,346 netTarSyr2,687 netTarSyr2,689 refSeqComposite,508 refSeqComposite,511 refSeqComposite,1435 refSeqComposite,1437 rmsk,130 rmsk,133 rmsk,241 rmsk,242 rmsk,248 rmsk,250 rmsk,252 rmsk,254 rmsk,275 rmsk,276 uniprot,63 uniprot,66 uniprot,261 uniprot,263 uniprot,272 uniprot,274 uniprot,283 uniprot,285 uniprot,412 uniprot,416 uniprot,423 uniprot,426 uniprot,431 uniprot,435 uniprot,437 uniprot,441 uniprot,468 uniprot,470 uniprot,471 uniprot,474 uniprot,475 uniprot,478 uniprot,572 uniprot,575 windowmaskerSdust,82 windowmaskerSdust,84 xenoMrna,261 xenoMrna,263 xenoMrna,312 xenoMrna,314 xenoMrna,328 xenoMrna,330 xenoMrna,364 xenoMrna,366 xenoMrna,381 xenoMrna,383 r augustusGene,291 chainHg38,1051 chainHg38,1097 chainMm10,1051 chainMm10,1097 chainNetHg38,1054 chainNetHg38,1100 chainNetMm10,1054 chainNetMm10,1100 chainNetTarSyr2,1054 chainNetTarSyr2,1100 chainTarSyr2,1051 chainTarSyr2,1097 nestedRepeats,327 netHg38,1051 netHg38,1097 netMm10,1051 netMm10,1097 netTarSyr2,1051 netTarSyr2,1097 rmsk,350 transMapEnsemblV5,762 transMapEstV5,731 transMapRefSeqV5,731 transMapRnaV5,731 transMapV5,837 windowmaskerSdust,99 r.s chainHg38,1016 chainMm10,1016 chainNetHg38,1019 chainNetMm10,1019 chainNetTarSyr2,1019 chainTarSyr2,1016 netHg38,1016 netMm10,1016 netTarSyr2,1016 random augustusGene,119 raney uniprot,1960 range gap,136 nestedRepeats,227 nestedRepeats,236 refSeqComposite,988 transMapEnsemblV5,658 transMapEstV5,627 transMapRefSeqV5,627 transMapRnaV5,627 transMapV5,733 uniprot,1809 ranked chainHg38,788 chainMm10,788 chainNetHg38,791 chainNetMm10,791 chainNetTarSyr2,791 chainTarSyr2,788 netHg38,788 netMm10,788 netTarSyr2,788 rare cpgIslandExt,57 cpgIslandExt,118 cpgIslandExtUnmasked,60 cpgIslandExtUnmasked,121 cpgIslandSuper,57 cpgIslandSuper,118 ratio cpgIslandExt,273 cpgIslandExt,349 cpgIslandExt,362 cpgIslandExtUnmasked,276 cpgIslandExtUnmasked,352 cpgIslandExtUnmasked,365 cpgIslandSuper,273 cpgIslandSuper,349 cpgIslandSuper,362 raw refSeqComposite,1293 transMapEnsemblV5,521 transMapEstV5,490 transMapRefSeqV5,490 transMapRnaV5,490 transMapV5,596 uniprot,1708 rc chainHg38,1099 chainMm10,1099 chainNetHg38,1102 chainNetMm10,1102 chainNetTarSyr2,1102 chainTarSyr2,1099 netHg38,1099 netMm10,1099 netTarSyr2,1099 rmsk,200 read gap,95 refSeqComposite,1462 realigning refSeqComposite,51 realignment refSeqComposite,59 refSeqComposite,488 rearrangement chainHg38,295 chainHg38,498 chainHg38,1064 chainMm10,295 chainMm10,498 chainMm10,1064 chainNetHg38,298 chainNetHg38,501 chainNetHg38,1067 chainNetMm10,298 chainNetMm10,501 chainNetMm10,1067 chainNetTarSyr2,298 chainNetTarSyr2,501 chainNetTarSyr2,1067 chainTarSyr2,295 chainTarSyr2,498 chainTarSyr2,1064 netHg38,295 netHg38,498 netHg38,1064 netMm10,295 netMm10,498 netMm10,1064 netTarSyr2,295 netTarSyr2,498 netTarSyr2,1064 rearrangements nestedRepeats,99 reason cpgIslandExt,136 cpgIslandExtUnmasked,139 cpgIslandSuper,136 recently uniprot,1186 reciprocal transMapEnsemblV5,241 transMapEstV5,210 transMapRefSeqV5,210 transMapRnaV5,210 transMapV5,66 transMapV5,316 record refSeqComposite,616 refSeqComposite,637 refSeqComposite,673 refSeqComposite,698 refSeqComposite,713 uniprot,496 xenoRefGene,67 records refSeqComposite,128 refSeqComposite,662 refer ensGene,42 genscan,144 refSeqComposite,1687 uniprot,1827 reference HLTOGAannotvHg38v1,10 HLTOGAannotvHg38v1,51 HLTOGAannotvHg38v1,68 HLTOGAannotvHg38v1,117 ncbiRefSeqGenomicDiff,10 refSeqComposite,30 refSeqComposite,111 refSeqComposite,466 refSeqComposite,880 refSeqComposite,1090 refSeqComposite,1777 refSeqComposite,1799 ucscToRefSeq,23 uniprot,1378 uniprot,1422 xenoRefGene,31 xenoRefGene,347 xenoRefGene,369 references HLTOGAannotvHg38v1,324 augustusGene,285 chainHg38,1014 chainMm10,1014 chainNetHg38,1017 chainNetMm10,1017 chainNetTarSyr2,1017 chainTarSyr2,1014 cpgIslandExt,603 cpgIslandExtUnmasked,606 cpgIslandSuper,603 ensGene,52 ensGene,167 genscan,152 genscan,179 microsat,113 mrna,463 nestedRepeats,66 nestedRepeats,323 netHg38,1014 netMm10,1014 netTarSyr2,1014 refSeqComposite,1731 rmsk,102 rmsk,346 simpleRepeat,73 transMapEnsemblV5,713 transMapEstV5,682 transMapRefSeqV5,682 transMapRnaV5,682 transMapV5,788 uniprot,1984 windowmaskerSdust,89 xenoMrna,537 xenoRefGene,302 refgene refSeqComposite,1420 transMapEnsemblV5,595 transMapEstV5,564 transMapRefSeqV5,2 transMapRefSeqV5,564 transMapRnaV5,564 transMapV5,670 reflects rmsk,213 refseq ncbiRefSeq,1 ncbiRefSeq,4 ncbiRefSeqCurated,1 ncbiRefSeqCurated,4 ncbiRefSeqGenomicDiff,1 ncbiRefSeqGenomicDiff,6 ncbiRefSeqOther,1 ncbiRefSeqOther,4 ncbiRefSeqPredicted,1 ncbiRefSeqPredicted,4 ncbiRefSeqPsl,1 ncbiRefSeqPsl,3 refSeqComposite,2 refSeqComposite,3 refSeqComposite,14 refSeqComposite,33 refSeqComposite,40 refSeqComposite,45 refSeqComposite,53 refSeqComposite,84 refSeqComposite,87 refSeqComposite,113 refSeqComposite,127 refSeqComposite,189 refSeqComposite,196 refSeqComposite,198 refSeqComposite,208 refSeqComposite,209 refSeqComposite,214 refSeqComposite,314 refSeqComposite,335 refSeqComposite,339 refSeqComposite,344 refSeqComposite,378 refSeqComposite,387 refSeqComposite,399 refSeqComposite,403 refSeqComposite,433 refSeqComposite,438 refSeqComposite,448 refSeqComposite,457 refSeqComposite,470 refSeqComposite,481 refSeqComposite,509 refSeqComposite,513 refSeqComposite,522 refSeqComposite,530 refSeqComposite,547 refSeqComposite,549 refSeqComposite,555 refSeqComposite,582 refSeqComposite,588 refSeqComposite,590 refSeqComposite,592 refSeqComposite,596 refSeqComposite,615 refSeqComposite,629 refSeqComposite,636 refSeqComposite,661 refSeqComposite,672 refSeqComposite,697 refSeqComposite,712 refSeqComposite,869 refSeqComposite,885 refSeqComposite,1096 refSeqComposite,1116 refSeqComposite,1131 refSeqComposite,1145 refSeqComposite,1148 refSeqComposite,1161 refSeqComposite,1168 refSeqComposite,1199 refSeqComposite,1209 refSeqComposite,1214 refSeqComposite,1225 refSeqComposite,1228 refSeqComposite,1357 refSeqComposite,1371 refSeqComposite,1374 refSeqComposite,1409 refSeqComposite,1412 refSeqComposite,1415 refSeqComposite,1419 refSeqComposite,1423 refSeqComposite,1573 refSeqComposite,1670 refSeqComposite,1672 refSeqComposite,1675 refSeqComposite,1729 refSeqComposite,1772 refSeqComposite,1801 transMapEnsemblV5,170 transMapEnsemblV5,707 transMapEstV5,139 transMapEstV5,676 transMapRefSeqV5,4 transMapRefSeqV5,17 transMapRefSeqV5,139 transMapRefSeqV5,676 transMapRnaV5,139 transMapRnaV5,676 transMapV5,245 transMapV5,782 ucscToRefSeq,1 ucscToRefSeq,3 ucscToRefSeq,26 uniprot,823 uniprot,828 uniprot,841 uniprot,845 uniprot,857 uniprot,864 uniprot,1002 uniprot,1010 uniprot,1055 uniprot,1207 uniprot,1236 uniprot,1276 uniprot,1290 xenoRefGene,2 xenoRefGene,5 xenoRefGene,34 xenoRefGene,66 xenoRefGene,300 xenoRefGene,342 xenoRefGene,371 refseqdiffs refSeqComposite,1476 refseqother refSeqComposite,1474 regeneron uniprot,1968 region chainHg38,201 chainHg38,401 chainMm10,201 chainMm10,401 chainNetHg38,204 chainNetHg38,404 chainNetMm10,204 chainNetMm10,404 chainNetTarSyr2,204 chainNetTarSyr2,404 chainTarSyr2,201 chainTarSyr2,401 cpgIslandExt,129 cpgIslandExtUnmasked,132 cpgIslandSuper,129 netHg38,201 netHg38,401 netMm10,201 netMm10,401 netTarSyr2,201 netTarSyr2,401 refSeqComposite,991 refSeqComposite,1543 uniprot,312 regions HLTOGAannotvHg38v1,85 augustusGene,76 chainHg38,16 chainHg38,136 chainHg38,288 chainMm10,16 chainMm10,136 chainMm10,288 chainNetHg38,19 chainNetHg38,139 chainNetHg38,291 chainNetMm10,19 chainNetMm10,139 chainNetMm10,291 chainNetTarSyr2,19 chainNetTarSyr2,139 chainNetTarSyr2,291 chainTarSyr2,16 chainTarSyr2,136 chainTarSyr2,288 cpgIslandExt,41 cpgIslandExt,150 cpgIslandExt,182 cpgIslandExtUnmasked,44 cpgIslandExtUnmasked,153 cpgIslandExtUnmasked,185 cpgIslandSuper,41 cpgIslandSuper,150 cpgIslandSuper,182 genscan,48 microsat,14 netHg38,16 netHg38,136 netHg38,288 netMm10,16 netMm10,136 netMm10,288 netTarSyr2,16 netTarSyr2,136 netTarSyr2,288 refSeqComposite,1496 simpleRepeat,39 transMapEnsemblV5,303 transMapEnsemblV5,604 transMapEstV5,272 transMapEstV5,573 transMapRefSeqV5,272 transMapRefSeqV5,573 transMapRnaV5,272 transMapRnaV5,573 transMapV5,378 transMapV5,679 unipInterest,3 uniprot,240 uniprot,297 uniprot,300 uniprot,328 uniprot,348 uniprot,368 uniprot,384 regulation cpgIslandExt,13 cpgIslandExt,143 cpgIslandExtUnmasked,16 cpgIslandExtUnmasked,146 cpgIslandSuper,13 cpgIslandSuper,143 related augustusGene,242 transMapV5,75 uniprot,551 relationship chainHg38,854 chainMm10,854 chainNetHg38,857 chainNetMm10,857 chainNetTarSyr2,857 chainTarSyr2,854 netHg38,854 netMm10,854 netTarSyr2,854 relative chainHg38,870 chainMm10,870 chainNetHg38,873 chainNetMm10,873 chainNetTarSyr2,873 chainTarSyr2,870 gap,79 gold,110 netHg38,870 netMm10,870 netTarSyr2,870 relatively cpgIslandExt,117 cpgIslandExtUnmasked,120 cpgIslandSuper,117 release refSeqComposite,1118 uniprot,1589 releases uniprot,1561 uniprot,1686 relevant mrna,106 uniprot,681 xenoMrna,180 relies HLTOGAannotvHg38v1,78 remain uniprot,1189 remaining chainHg38,693 chainMm10,693 chainNetHg38,696 chainNetMm10,696 chainNetTarSyr2,696 chainTarSyr2,693 netHg38,693 netMm10,693 netTarSyr2,693 removed chainHg38,583 chainMm10,583 chainNetHg38,586 chainNetMm10,586 chainNetTarSyr2,586 chainTarSyr2,583 cpgIslandExt,331 cpgIslandExtUnmasked,334 cpgIslandSuper,331 netHg38,583 netMm10,583 netTarSyr2,583 rmsk,279 uniprot,597 uniprot,1150 removes transMapEnsemblV5,308 transMapEstV5,277 transMapRefSeqV5,277 transMapRnaV5,277 transMapV5,383 reorganizing uniprot,1987 repbase nestedRepeats,45 nestedRepeats,57 nestedRepeats,335 nestedRepeats,342 rmsk,81 rmsk,93 rmsk,114 rmsk,358 rmsk,365 repeat cpgIslandExt,181 cpgIslandExt,191 cpgIslandExtUnmasked,184 cpgIslandExtUnmasked,194 cpgIslandSuper,181 cpgIslandSuper,191 microsat,83 nestedRepeats,85 nestedRepeats,122 nestedRepeats,135 nestedRepeats,257 nestedRepeats,316 rmsk,168 rmsk,175 rmsk,227 rmsk,339 simpleRepeat,47 repeated uniprot,386 uniprot,390 repeating rmsk,2 repeatmasker chainHg38,951 chainMm10,951 chainNetHg38,954 chainNetMm10,954 chainNetTarSyr2,954 chainTarSyr2,951 nestedRepeats,9 nestedRepeats,29 nestedRepeats,73 nestedRepeats,77 nestedRepeats,109 nestedRepeats,254 nestedRepeats,285 nestedRepeats,330 netHg38,951 netMm10,951 netTarSyr2,951 rmsk,1 rmsk,5 rmsk,19 rmsk,78 rmsk,292 rmsk,353 repeats chainHg38,943 chainMm10,943 chainNetHg38,946 chainNetMm10,946 chainNetTarSyr2,946 chainTarSyr2,943 microsat,6 microsat,9 microsat,35 microsat,58 microsat,63 microsat,86 microsat,93 microsat,106 microsat,117 nestedRepeats,6 nestedRepeats,13 nestedRepeats,22 nestedRepeats,37 nestedRepeats,49 nestedRepeats,95 nestedRepeats,366 nestedRepeats,374 nestedRepeats,401 netHg38,943 netMm10,943 netTarSyr2,943 rmsk,8 rmsk,27 rmsk,41 rmsk,68 rmsk,85 rmsk,152 rmsk,179 rmsk,183 rmsk,185 rmsk,187 rmsk,196 rmsk,303 rmsk,310 rmsk,389 rmsk,397 rmsk,424 simpleRepeat,2 simpleRepeat,5 simpleRepeat,10 simpleRepeat,17 simpleRepeat,20 simpleRepeat,24 simpleRepeat,34 simpleRepeat,77 unipRepeat,1 unipRepeat,3 uniprot,383 uniprot,440 windowmaskerSdust,11 repeats.bed windowmaskerSdust,73 windowmaskerSdust,75 repetitive nestedRepeats,351 refSeqComposite,981 refSeqComposite,1009 rmsk,374 uniprot,1400 reporting refSeqComposite,1093 represent chainHg38,134 chainHg38,162 chainHg38,448 chainHg38,453 chainMm10,134 chainMm10,162 chainMm10,448 chainMm10,453 chainNetHg38,137 chainNetHg38,165 chainNetHg38,451 chainNetHg38,456 chainNetMm10,137 chainNetMm10,165 chainNetMm10,451 chainNetMm10,456 chainNetTarSyr2,137 chainNetTarSyr2,165 chainNetTarSyr2,451 chainNetTarSyr2,456 chainTarSyr2,134 chainTarSyr2,162 chainTarSyr2,448 chainTarSyr2,453 netHg38,134 netHg38,162 netHg38,448 netHg38,453 netMm10,134 netMm10,162 netMm10,448 netMm10,453 netTarSyr2,134 netTarSyr2,162 netTarSyr2,448 netTarSyr2,453 representative refSeqComposite,540 represented gap,70 rmsk,49 representing gap,113 reproducibility uniprot,1645 required refSeqComposite,910 refSeqComposite,924 requirements refSeqComposite,394 res chainHg38,1109 chainMm10,1109 chainNetHg38,1112 chainNetMm10,1112 chainNetTarSyr2,1112 chainTarSyr2,1109 ensGene,197 microsat,127 mrna,481 mrna,506 mrna,526 netHg38,1109 netMm10,1109 netTarSyr2,1109 refSeqComposite,1740 refSeqComposite,1781 refSeqComposite,1814 simpleRepeat,87 transMapEnsemblV5,747 transMapEstV5,716 transMapRefSeqV5,716 transMapRnaV5,716 transMapV5,822 uniprot,1999 xenoMrna,555 xenoMrna,580 xenoMrna,600 xenoRefGene,310 xenoRefGene,351 xenoRefGene,384 research nestedRepeats,54 refSeqComposite,1104 rmsk,90 residues uniprot,344 resolve uniprot,1357 resolved uniprot,1284 resource uniprot,1995 uniprot,2033 rest cpgIslandExt,518 cpgIslandExtUnmasked,521 cpgIslandSuper,518 ensGene,108 refSeqComposite,1311 restricted refSeqComposite,581 result chainHg38,175 chainMm10,175 chainNetHg38,178 chainNetMm10,178 chainNetTarSyr2,178 chainTarSyr2,175 cpgIslandExt,112 cpgIslandExtUnmasked,115 cpgIslandSuper,112 netHg38,175 netMm10,175 netTarSyr2,175 refSeqComposite,61 transMapEnsemblV5,507 transMapEstV5,476 transMapRefSeqV5,476 transMapRnaV5,476 transMapV5,582 uniprot,798 uniprot,1065 uniprot,1170 resulting chainHg38,602 chainMm10,602 chainNetHg38,605 chainNetMm10,605 chainNetTarSyr2,605 chainTarSyr2,602 netHg38,602 netMm10,602 netTarSyr2,602 refSeqComposite,285 transMapEnsemblV5,81 transMapEnsemblV5,337 transMapEnsemblV5,349 transMapEnsemblV5,494 transMapEstV5,50 transMapEstV5,306 transMapEstV5,318 transMapEstV5,463 transMapRefSeqV5,50 transMapRefSeqV5,306 transMapRefSeqV5,318 transMapRefSeqV5,463 transMapRnaV5,50 transMapRnaV5,306 transMapRnaV5,318 transMapRnaV5,463 transMapV5,51 transMapV5,412 transMapV5,424 transMapV5,569 uniprot,874 uniprot,1137 uniprot,1308 results refSeqComposite,1102 uniprot,1463 uniprot,1649 retained uniprot,795 retroposons rmsk,173 review refSeqComposite,613 refSeqComposite,633 refSeqComposite,650 refSeqComposite,681 refSeqComposite,706 xenoRefGene,64 reviewed refSeqComposite,624 refSeqComposite,634 refSeqComposite,640 xenoRefGene,74 reviews refSeqComposite,259 riestra uniprot,1972 right refSeqComposite,975 rightmost refSeqComposite,1017 rna refSeqComposite,29 refSeqComposite,1089 refSeqComposite,1149 refSeqComposite,1210 refSeqComposite,1252 refSeqComposite,1660 rmsk,186 rmsk,189 transMapEnsemblV5,598 transMapEstV5,567 transMapRefSeqV5,567 transMapRnaV5,2 transMapRnaV5,5 transMapRnaV5,567 transMapV5,673 xenoRefGene,30 xenoRefGene,242 xenoRefGene,288 rna-seq refSeqComposite,75 refSeqComposite,366 rnas ncbiRefSeqPsl,6 refSeqComposite,54 refSeqComposite,439 refSeqComposite,490 refSeqComposite,1229 xenoRefGene,219 robert chainHg38,991 chainMm10,991 chainNetHg38,994 chainNetMm10,994 chainNetTarSyr2,994 chainTarSyr2,991 nestedRepeats,307 netHg38,991 netMm10,991 netTarSyr2,991 rmsk,330 role uniprot,309 rolling rmsk,201 ross chainHg38,940 chainMm10,940 chainNetHg38,943 chainNetMm10,943 chainNetTarSyr2,943 chainTarSyr2,940 netHg38,940 netMm10,940 netTarSyr2,940 row nestedRepeats,179 rpts nestedRepeats,2 rrna rmsk,191 run chainHg38,656 chainMm10,656 chainNetHg38,659 chainNetMm10,659 chainNetTarSyr2,659 chainTarSyr2,656 netHg38,656 netMm10,656 netTarSyr2,656 refSeqComposite,1610 windowmaskerSdust,53 s augustusGene,104 augustusGene,221 augustusGene,319 chainHg38,1059 chainHg38,1076 chainHg38,1089 chainMm10,1059 chainMm10,1076 chainMm10,1089 chainNetHg38,1062 chainNetHg38,1079 chainNetHg38,1092 chainNetMm10,1062 chainNetMm10,1079 chainNetMm10,1092 chainNetTarSyr2,1062 chainNetTarSyr2,1079 chainNetTarSyr2,1092 chainTarSyr2,1059 chainTarSyr2,1076 chainTarSyr2,1089 cpgIslandExt,436 cpgIslandExt,440 cpgIslandExt,442 cpgIslandExt,443 cpgIslandExt,445 cpgIslandExt,447 cpgIslandExt,453 cpgIslandExt,455 cpgIslandExtUnmasked,439 cpgIslandExtUnmasked,443 cpgIslandExtUnmasked,445 cpgIslandExtUnmasked,446 cpgIslandExtUnmasked,448 cpgIslandExtUnmasked,450 cpgIslandExtUnmasked,456 cpgIslandExtUnmasked,458 cpgIslandSuper,436 cpgIslandSuper,440 cpgIslandSuper,442 cpgIslandSuper,443 cpgIslandSuper,445 cpgIslandSuper,447 cpgIslandSuper,453 cpgIslandSuper,455 genscan,190 genscan,194 genscan,210 nestedRepeats,286 netHg38,1059 netHg38,1076 netHg38,1089 netMm10,1059 netMm10,1076 netMm10,1089 netTarSyr2,1059 netTarSyr2,1076 netTarSyr2,1089 refSeqComposite,106 refSeqComposite,319 refSeqComposite,468 refSeqComposite,487 refSeqComposite,1123 refSeqComposite,1208 rmsk,18 rmsk,293 transMapEnsemblV5,732 transMapEstV5,701 transMapRefSeqV5,701 transMapRnaV5,701 transMapV5,807 uniprot,751 uniprot,774 saccharomyces augustusGene,223 safely refSeqComposite,1455 saibol1 ensGene,80 refSeqComposite,1554 refSeqComposite,1618 transMapEnsemblV5,205 transMapEnsemblV5,665 transMapEstV5,174 transMapEstV5,634 transMapRefSeqV5,174 transMapRefSeqV5,634 transMapRnaV5,174 transMapRnaV5,634 transMapV5,280 transMapV5,740 uniprot,1816 saibol1.ensembl.transmapv4.bigpsl transMapEnsemblV5,593 transMapEstV5,562 transMapRefSeqV5,562 transMapRnaV5,562 saibol1.ensembl.transmapv5.bigpsl transMapV5,668 saibol1.est.transmapv4.bigpsl transMapEnsemblV5,602 transMapEstV5,571 transMapRefSeqV5,571 transMapRnaV5,571 saibol1.est.transmapv5.bigpsl transMapV5,677 saibol1.fa windowmaskerSdust,62 windowmaskerSdust,71 saibol1.refseq.transmapv4.bigpsl transMapEnsemblV5,596 transMapEnsemblV5,668 transMapEstV5,565 transMapEstV5,637 transMapRefSeqV5,565 transMapRefSeqV5,637 transMapRnaV5,565 transMapRnaV5,637 saibol1.refseq.transmapv5.bigpsl transMapV5,671 transMapV5,743 saibol1.rna.transmapv4.bigpsl transMapEnsemblV5,599 transMapEstV5,568 transMapRefSeqV5,568 transMapRnaV5,568 saibol1.rna.transmapv5.bigpsl transMapV5,674 salzberg genscan,189 same chainHg38,527 chainHg38,542 chainMm10,527 chainMm10,542 chainNetHg38,530 chainNetHg38,545 chainNetMm10,530 chainNetMm10,545 chainNetTarSyr2,530 chainNetTarSyr2,545 chainTarSyr2,527 chainTarSyr2,542 nestedRepeats,143 netHg38,527 netHg38,542 netMm10,527 netMm10,542 netTarSyr2,527 netTarSyr2,542 refSeqComposite,1221 uniprot,608 uniprot,612 uniprot,641 uniprot,1173 xenoMrna,124 xenoMrna,129 sample augustusGene,133 sampling augustusGene,129 sanborn transMapEnsemblV5,789 transMapEstV5,758 transMapRefSeqV5,758 transMapRnaV5,758 transMapV5,864 santa chainHg38,964 chainHg38,1009 chainMm10,964 chainMm10,1009 chainNetHg38,967 chainNetHg38,1012 chainNetMm10,967 chainNetMm10,1012 chainNetTarSyr2,967 chainNetTarSyr2,1012 chainTarSyr2,964 chainTarSyr2,1009 netHg38,964 netHg38,1009 netMm10,964 netMm10,1009 netTarSyr2,964 netTarSyr2,1009 satellite rmsk,184 save cpgIslandExt,582 cpgIslandExtUnmasked,585 cpgIslandSuper,582 sayers mrna,476 xenoMrna,550 scaffold gold,81 gold,119 scale HLTOGAannotvHg38v1,363 sch windowmaskerSdust,94 scheib uniprot,2012 schwartz chainHg38,931 chainHg38,1088 chainMm10,931 chainMm10,1088 chainNetHg38,934 chainNetHg38,1091 chainNetMm10,934 chainNetMm10,1091 chainNetTarSyr2,934 chainNetTarSyr2,1091 chainTarSyr2,931 chainTarSyr2,1088 netHg38,931 netHg38,1088 netMm10,931 netMm10,1088 netTarSyr2,931 netTarSyr2,1088 sci chainHg38,1074 chainMm10,1074 chainNetHg38,1077 chainNetMm10,1077 chainNetTarSyr2,1077 chainTarSyr2,1074 netHg38,1074 netMm10,1074 netTarSyr2,1074 science HLTOGAannotvHg38v1,364 genscan,203 scientific refSeqComposite,282 uniprot,37 scientists mrna,461 refSeqComposite,1722 transMapEnsemblV5,700 transMapEstV5,669 transMapRefSeqV5,669 transMapRnaV5,669 transMapV5,775 xenoMrna,535 xenoRefGene,293 score chainHg38,685 chainMm10,685 chainNetHg38,688 chainNetMm10,688 chainNetTarSyr2,688 chainTarSyr2,685 nestedRepeats,188 nestedRepeats,216 nestedRepeats,223 netHg38,685 netMm10,685 netTarSyr2,685 uniprot,950 uniprot,1116 uniprot,1317 uniprot,1349 uniprot,1491 scores uniprot,1085 scoring chainHg38,78 chainHg38,88 chainHg38,664 chainHg38,681 chainHg38,1036 chainMm10,78 chainMm10,88 chainMm10,664 chainMm10,681 chainMm10,1036 chainNetHg38,81 chainNetHg38,91 chainNetHg38,667 chainNetHg38,684 chainNetHg38,1039 chainNetMm10,81 chainNetMm10,91 chainNetMm10,667 chainNetMm10,684 chainNetMm10,1039 chainNetTarSyr2,81 chainNetTarSyr2,91 chainNetTarSyr2,667 chainNetTarSyr2,684 chainNetTarSyr2,1039 chainTarSyr2,78 chainTarSyr2,88 chainTarSyr2,664 chainTarSyr2,681 chainTarSyr2,1036 cpgIslandExt,238 cpgIslandExt,251 cpgIslandExtUnmasked,241 cpgIslandExtUnmasked,254 cpgIslandSuper,238 cpgIslandSuper,251 netHg38,78 netHg38,88 netHg38,664 netHg38,681 netHg38,1036 netMm10,78 netMm10,88 netMm10,664 netMm10,681 netMm10,1036 netTarSyr2,78 netTarSyr2,88 netTarSyr2,664 netTarSyr2,681 netTarSyr2,1036 scott chainHg38,930 chainMm10,930 chainNetHg38,933 chainNetMm10,933 chainNetTarSyr2,933 chainTarSyr2,930 netHg38,930 netMm10,930 netTarSyr2,930 screens nestedRepeats,32 rmsk,22 script uniprot,1549 scrna rmsk,193 sdust windowmaskerSdust,2 windowmaskerSdust,8 windowmaskerSdust,68 search transMapEnsemblV5,801 transMapEstV5,770 transMapRefSeqV5,770 transMapRnaV5,770 transMapV5,876 searching cpgIslandExt,230 cpgIslandExtUnmasked,233 cpgIslandSuper,230 searls genscan,191 second xenoMrna,93 secondary unipStruct,5 uniprot,361 secreted uniprot,247 section ensGene,53 genscan,153 nestedRepeats,67 refSeqComposite,92 refSeqComposite,1655 rmsk,103 uniprot,897 sections chainHg38,811 chainMm10,811 chainNetHg38,814 chainNetMm10,814 chainNetTarSyr2,814 chainTarSyr2,811 netHg38,811 netMm10,811 netTarSyr2,811 see augustusGene,42 ensGene,25 ensGene,161 genscan,57 microsat,101 nestedRepeats,296 nestedRepeats,370 refSeqComposite,89 refSeqComposite,137 refSeqComposite,337 refSeqComposite,545 rmsk,319 rmsk,393 simpleRepeat,63 transMapEnsemblV5,231 transMapEnsemblV5,574 transMapEstV5,200 transMapEstV5,543 transMapRefSeqV5,200 transMapRefSeqV5,543 transMapRnaV5,200 transMapRnaV5,543 transMapV5,306 transMapV5,649 uniprot,188 uniprot,526 uniprot,768 uniprot,894 xenoRefGene,209 segment cpgIslandExt,254 cpgIslandExt,299 cpgIslandExtUnmasked,257 cpgIslandExtUnmasked,302 cpgIslandSuper,254 cpgIslandSuper,299 segments cpgIslandExt,252 cpgIslandExtUnmasked,255 cpgIslandSuper,252 select genscan,90 refSeqComposite,514 refSeqComposite,531 refSeqComposite,535 refSeqComposite,548 refSeqComposite,838 xenoRefGene,162 selected mrna,242 mrna,258 mrna,311 refSeqComposite,160 transMapEnsemblV5,214 transMapEnsemblV5,251 transMapEnsemblV5,262 transMapEnsemblV5,330 transMapEstV5,183 transMapEstV5,220 transMapEstV5,231 transMapEstV5,299 transMapRefSeqV5,183 transMapRefSeqV5,220 transMapRefSeqV5,231 transMapRefSeqV5,299 transMapRnaV5,183 transMapRnaV5,220 transMapRnaV5,231 transMapRnaV5,299 transMapV5,289 transMapV5,326 transMapV5,337 transMapV5,405 uniprot,986 xenoMrna,316 xenoMrna,332 xenoMrna,385 selecting microsat,60 selective cpgIslandExt,122 cpgIslandExtUnmasked,125 cpgIslandSuper,122 semi-markov augustusGene,117 sensitivity transMapV5,148 sep chainHg38,1079 chainMm10,1079 chainNetHg38,1082 chainNetMm10,1082 chainNetTarSyr2,5 chainNetTarSyr2,69 chainNetTarSyr2,309 chainNetTarSyr2,1082 chainNetTarSyr2Viewchain,3 chainNetTarSyr2Viewnet,3 chainTarSyr2,4 chainTarSyr2,66 chainTarSyr2,306 chainTarSyr2,1079 nestedRepeats,356 netHg38,1079 netMm10,1079 netTarSyr2,4 netTarSyr2,66 netTarSyr2,306 netTarSyr2,1079 rmsk,379 separated mrna,213 xenoMrna,287 seq unipConflict,1 sequence HLTOGAannotvHg38v1,150 HLTOGAannotvHg38v1,309 augustusGene,32 augustusGene,70 chainHg38,169 chainHg38,298 chainHg38,1039 chainMm10,169 chainMm10,298 chainMm10,1039 chainNetHg38,172 chainNetHg38,301 chainNetHg38,1042 chainNetMm10,172 chainNetMm10,301 chainNetMm10,1042 chainNetTarSyr2,172 chainNetTarSyr2,301 chainNetTarSyr2,1042 chainTarSyr2,169 chainTarSyr2,298 chainTarSyr2,1039 cpgIslandExt,232 cpgIslandExt,303 cpgIslandExt,325 cpgIslandExt,329 cpgIslandExt,397 cpgIslandExt,410 cpgIslandExtUnmasked,7 cpgIslandExtUnmasked,235 cpgIslandExtUnmasked,306 cpgIslandExtUnmasked,328 cpgIslandExtUnmasked,332 cpgIslandExtUnmasked,400 cpgIslandExtUnmasked,413 cpgIslandSuper,232 cpgIslandSuper,303 cpgIslandSuper,325 cpgIslandSuper,329 cpgIslandSuper,397 cpgIslandSuper,410 gap,55 gold,54 mrna,347 mrna,438 mrna,451 mrna,458 netHg38,169 netHg38,298 netHg38,1039 netMm10,169 netMm10,298 netMm10,1039 netTarSyr2,169 netTarSyr2,298 netTarSyr2,1039 refSeqComposite,655 refSeqComposite,666 refSeqComposite,882 refSeqComposite,982 refSeqComposite,1010 refSeqComposite,1037 refSeqComposite,1049 refSeqComposite,1082 refSeqComposite,1086 refSeqComposite,1091 refSeqComposite,1287 refSeqComposite,1800 refSeqComposite,1805 rmsk,48 rmsk,62 transMapEnsemblV5,129 transMapEnsemblV5,690 transMapEnsemblV5,697 transMapEstV5,98 transMapEstV5,659 transMapEstV5,666 transMapRefSeqV5,98 transMapRefSeqV5,659 transMapRefSeqV5,666 transMapRnaV5,98 transMapRnaV5,659 transMapRnaV5,666 transMapV5,204 transMapV5,765 transMapV5,772 ucscToINSDC,7 ucscToINSDC,29 ucscToRefSeq,24 unipConflict,4 uniprot,356 uniprot,372 uniprot,381 uniprot,387 uniprot,636 uniprot,967 uniprot,971 uniprot,1134 uniprot,1219 uniprot,1242 uniprot,1379 uniprot,2035 windowmaskerSdust,17 xenoMrna,79 xenoMrna,103 xenoMrna,111 xenoMrna,421 xenoMrna,512 xenoMrna,525 xenoMrna,532 xenoRefGene,277 xenoRefGene,289 xenoRefGene,370 xenoRefGene,375 sequence-to-gene refSeqComposite,684 sequenced windowmaskerSdust,104 sequences gold,13 microsat,26 microsat,124 nestedRepeats,34 nestedRepeats,42 refSeqComposite,31 refSeqComposite,112 refSeqComposite,270 refSeqComposite,286 refSeqComposite,887 refSeqComposite,1097 refSeqComposite,1661 refSeqComposite,1778 rmsk,24 rmsk,32 simpleRepeat,84 uniprot,16 uniprot,85 uniprot,112 uniprot,114 uniprot,131 uniprot,138 uniprot,166 uniprot,195 uniprot,197 uniprot,377 uniprot,673 uniprot,781 uniprot,1103 uniprot,1374 uniprot,1424 uniprot,1608 uniprot,1611 uniprot,1889 xenoMrna,116 xenoRefGene,32 xenoRefGene,348 sequencing chainHg38,893 chainMm10,893 chainNetHg38,896 chainNetMm10,896 chainNetTarSyr2,896 chainTarSyr2,893 cytoBandIdeo,9 gap,6 gc5BaseBw,10 gold,7 netHg38,893 netMm10,893 netTarSyr2,893 ucscToINSDC,12 ucscToRefSeq,7 server ensGene,144 refSeqComposite,1329 refSeqComposite,1335 refSeqComposite,1351 refSeqComposite,1490 refSeqComposite,1605 refSeqComposite,1632 refSeqComposite,1684 refSeqComposite,1710 transMapEnsemblV5,561 transMapEstV5,530 transMapRefSeqV5,530 transMapRnaV5,530 transMapV5,636 uniprot,1699 uniprot,1745 servers cpgIslandExt,539 cpgIslandExtUnmasked,542 cpgIslandSuper,539 ensGene,116 set refSeqComposite,161 refSeqComposite,1500 refSeqComposite,1637 refSeqComposite,1700 transMapEnsemblV5,281 transMapEstV5,250 transMapRefSeqV5,250 transMapRnaV5,250 transMapV5,356 uniprot,838 uniprot,858 uniprot,1287 uniprot,1597 sets augustusGene,158 refSeqComposite,155 setting refSeqComposite,1041 refSeqComposite,1068 settings cpgIslandExt,213 cpgIslandExtUnmasked,216 cpgIslandSuper,213 refSeqComposite,746 several HLTOGAannotvHg38v1,274 mrna,365 transMapEnsemblV5,138 transMapEstV5,107 transMapRefSeqV5,107 transMapRnaV5,107 transMapV5,213 xenoMrna,439 shade nestedRepeats,194 shaded mrna,51 nestedRepeats,182 xenoMrna,55 shades nestedRepeats,202 shading nestedRepeats,240 refSeqComposite,608 rmsk,208 rmsk,239 xenoRefGene,59 sharma HLTOGAannotvHg38v1,342 shift refSeqComposite,962 shifted refSeqComposite,971 refSeqComposite,1018 short refSeqComposite,929 rmsk,153 uniprot,460 uniprot,978 shortgap refSeqComposite,965 shotgun gap,130 gold,152 should mrna,278 xenoMrna,352 show refSeqComposite,157 refSeqComposite,791 refSeqComposite,906 refSeqComposite,920 uniprot,80 uniprot,227 uniprot,538 xenoRefGene,125 showing refSeqComposite,960 shown HLTOGAannotvHg38v1,136 chainHg38,41 chainHg38,54 chainMm10,41 chainMm10,54 chainNetHg38,44 chainNetHg38,57 chainNetMm10,44 chainNetMm10,57 chainNetTarSyr2,44 chainNetTarSyr2,57 chainTarSyr2,41 chainTarSyr2,54 gold,102 microsat,48 mrna,96 netHg38,41 netHg38,54 netMm10,41 netMm10,54 netTarSyr2,41 netTarSyr2,54 uniprot,504 uniprot,628 uniprot,646 uniprot,1580 uniprot,1631 xenoMrna,170 shows augustusGene,15 augustusGene,108 chainHg38,15 chainHg38,62 chainHg38,267 chainMm10,15 chainMm10,62 chainMm10,267 chainNetHg38,18 chainNetHg38,65 chainNetHg38,270 chainNetMm10,18 chainNetMm10,65 chainNetMm10,270 chainNetTarSyr2,18 chainNetTarSyr2,65 chainNetTarSyr2,270 chainTarSyr2,15 chainTarSyr2,62 chainTarSyr2,267 gap,10 gc5BaseBw,16 genscan,13 gold,11 mrna,16 nestedRepeats,17 nestedRepeats,81 netHg38,15 netHg38,62 netHg38,267 netMm10,15 netMm10,62 netMm10,267 netTarSyr2,15 netTarSyr2,62 netTarSyr2,267 refSeqComposite,18 refSeqComposite,1004 refSeqComposite,1015 uniprot,14 uniprot,484 xenoRefGene,14 side gap,88 siepel transMapEnsemblV5,714 transMapEstV5,683 transMapRefSeqV5,683 transMapRnaV5,683 transMapV5,789 signal augustusGene,48 augustusGene,63 unipLocSignal,1 unipLocSignal,4 uniprot,238 uniprot,476 uniprot,511 uniprot,564 signals genscan,34 genscan,187 significantly cpgIslandExt,156 cpgIslandExtUnmasked,159 cpgIslandSuper,156 signifies rmsk,258 similar nestedRepeats,199 uniprot,1403 simple microsat,57 microsat,85 rmsk,178 simpleRepeat,1 simpleRepeat,3 simpleRepeat,15 simultaneously chainHg38,101 chainMm10,101 chainNetHg38,104 chainNetMm10,104 chainNetTarSyr2,104 chainTarSyr2,101 netHg38,101 netMm10,101 netTarSyr2,101 since chainHg38,576 chainMm10,576 chainNetHg38,579 chainNetMm10,579 chainNetTarSyr2,579 chainTarSyr2,576 netHg38,576 netMm10,576 netTarSyr2,576 uniprot,1383 sine rmsk,157 single chainHg38,128 chainHg38,137 chainHg38,626 chainHg38,631 chainMm10,128 chainMm10,137 chainMm10,626 chainMm10,631 chainNetHg38,131 chainNetHg38,140 chainNetHg38,629 chainNetHg38,634 chainNetMm10,131 chainNetMm10,140 chainNetMm10,629 chainNetMm10,634 chainNetTarSyr2,131 chainNetTarSyr2,140 chainNetTarSyr2,629 chainNetTarSyr2,634 chainTarSyr2,128 chainTarSyr2,137 chainTarSyr2,626 chainTarSyr2,631 mrna,402 nestedRepeats,178 netHg38,128 netHg38,137 netHg38,626 netHg38,631 netMm10,128 netMm10,137 netMm10,626 netMm10,631 netTarSyr2,128 netTarSyr2,137 netTarSyr2,626 netTarSyr2,631 refSeqComposite,534 refSeqComposite,1251 transMapEnsemblV5,480 transMapEstV5,449 transMapRefSeqV5,449 transMapRnaV5,449 transMapV5,555 uniprot,141 xenoMrna,475 xenoRefGene,241 single-lined chainHg38,210 chainMm10,210 chainNetHg38,213 chainNetMm10,213 chainNetTarSyr2,213 chainTarSyr2,210 netHg38,210 netMm10,210 netTarSyr2,210 site genscan,157 windowmaskerSdust,45 sites augustusGene,54 augustusGene,59 cpgIslandExt,34 cpgIslandExtUnmasked,37 cpgIslandSuper,34 refSeqComposite,272 uniprot,342 uniprot,354 uniprot,578 uniprot,585 size gap,135 skip refSeqComposite,1034 skipped refSeqComposite,1047 sm refSeqComposite,1755 xenoRefGene,325 small refSeqComposite,937 smallsize chainHg38,711 chainMm10,711 chainNetHg38,714 chainNetMm10,714 chainNetTarSyr2,714 chainTarSyr2,711 netHg38,711 netMm10,711 netTarSyr2,711 smit chainHg38,948 chainHg38,1092 chainMm10,948 chainMm10,1092 chainNetHg38,951 chainNetHg38,1095 chainNetMm10,951 chainNetMm10,1095 chainNetTarSyr2,951 chainNetTarSyr2,1095 chainTarSyr2,948 chainTarSyr2,1092 nestedRepeats,306 nestedRepeats,324 nestedRepeats,371 nestedRepeats,395 netHg38,948 netHg38,1092 netMm10,948 netMm10,1092 netTarSyr2,948 netTarSyr2,1092 rmsk,17 rmsk,329 rmsk,347 rmsk,394 rmsk,418 snrna rmsk,192 so chainHg38,440 chainMm10,440 chainNetHg38,443 chainNetMm10,443 chainNetTarSyr2,443 chainTarSyr2,440 netHg38,440 netMm10,440 netTarSyr2,440 refSeqComposite,302 refSeqComposite,1616 uniprot,1135 uniprot,1430 society refSeqComposite,1079 soft-masked rmsk,305 software HLTOGAannotvHg38v1,327 nestedRepeats,255 refSeqComposite,377 some cpgIslandExt,134 cpgIslandExtUnmasked,137 cpgIslandSuper,134 mrna,104 nestedRepeats,207 refSeqComposite,660 refSeqComposite,708 rmsk,105 rmsk,268 transMapEnsemblV5,299 transMapEnsemblV5,309 transMapEstV5,268 transMapEstV5,278 transMapRefSeqV5,268 transMapRefSeqV5,278 transMapRnaV5,268 transMapRnaV5,278 transMapV5,374 transMapV5,384 uniprot,318 xenoMrna,178 sometimes simpleRepeat,50 uniprot,983 sort cpgIslandExt,483 cpgIslandExtUnmasked,486 cpgIslandSuper,483 sorted chainHg38,780 chainMm10,780 chainNetHg38,783 chainNetMm10,783 chainNetTarSyr2,783 chainTarSyr2,780 netHg38,780 netMm10,780 netTarSyr2,780 uniprot,556 source cpgIslandExt,555 cpgIslandExtUnmasked,558 cpgIslandSuper,555 refSeqComposite,1517 transMapEnsemblV5,153 transMapEnsemblV5,325 transMapEnsemblV5,343 transMapEnsemblV5,407 transMapEnsemblV5,432 transMapEnsemblV5,623 transMapEnsemblV5,637 transMapEstV5,122 transMapEstV5,294 transMapEstV5,312 transMapEstV5,376 transMapEstV5,401 transMapEstV5,592 transMapEstV5,606 transMapRefSeqV5,122 transMapRefSeqV5,294 transMapRefSeqV5,312 transMapRefSeqV5,376 transMapRefSeqV5,401 transMapRefSeqV5,592 transMapRefSeqV5,606 transMapRnaV5,122 transMapRnaV5,294 transMapRnaV5,312 transMapRnaV5,376 transMapRnaV5,401 transMapRnaV5,592 transMapRnaV5,606 transMapV5,228 transMapV5,400 transMapV5,418 transMapV5,482 transMapV5,507 transMapV5,698 transMapV5,712 uniprot,820 uniprot,1545 uniprot,1774 uniprot,1788 windowmaskerSdust,33 sources transMapEnsemblV5,48 transMapEnsemblV5,66 space mrna,216 uniprot,1990 xenoMrna,290 spaces gold,100 span chainHg38,399 chainMm10,399 chainNetHg38,402 chainNetMm10,402 chainNetTarSyr2,402 chainTarSyr2,399 netHg38,399 netMm10,399 netTarSyr2,399 refSeqComposite,1006 specialized simpleRepeat,29 species HLTOGAannotvHg38v1,52 HLTOGAannotvHg38v1,127 augustusGene,166 augustusGene,173 augustusGene,181 augustusGene,186 augustusGene,200 augustusGene,229 augustusGene,244 chainHg38,118 chainHg38,172 chainHg38,191 chainHg38,899 chainMm10,118 chainMm10,172 chainMm10,191 chainMm10,899 chainNetHg38,121 chainNetHg38,175 chainNetHg38,194 chainNetHg38,902 chainNetMm10,121 chainNetMm10,175 chainNetMm10,194 chainNetMm10,902 chainNetTarSyr2,121 chainNetTarSyr2,175 chainNetTarSyr2,194 chainNetTarSyr2,902 chainTarSyr2,118 chainTarSyr2,172 chainTarSyr2,191 chainTarSyr2,899 netHg38,118 netHg38,172 netHg38,191 netHg38,899 netMm10,118 netMm10,172 netMm10,191 netMm10,899 netTarSyr2,118 netTarSyr2,172 netTarSyr2,191 netTarSyr2,899 transMapEnsemblV5,32 transMapEnsemblV5,271 transMapEstV5,30 transMapEstV5,240 transMapRefSeqV5,30 transMapRefSeqV5,240 transMapRnaV5,30 transMapRnaV5,240 transMapV5,29 transMapV5,79 transMapV5,115 transMapV5,346 species-specific augustusGene,156 specific gap,34 gold,36 mrna,143 simpleRepeat,53 xenoMrna,217 specification gap,60 gold,59 specify refSeqComposite,1114 speed refSeqComposite,1443 splice augustusGene,53 genscan,156 refSeqComposite,271 uniprot,144 spliced transMapEnsemblV5,176 transMapEstV5,17 transMapEstV5,145 transMapRefSeqV5,145 transMapRnaV5,145 transMapV5,251 splicing augustusGene,123 genscan,33 genscan,186 split chainHg38,581 chainMm10,581 chainNetHg38,584 chainNetMm10,584 chainNetTarSyr2,584 chainTarSyr2,581 netHg38,581 netMm10,581 netTarSyr2,581 spontaneous cpgIslandExt,109 cpgIslandExtUnmasked,112 cpgIslandSuper,109 squirrel chainHg38,72 chainHg38,99 chainHg38,157 chainHg38,204 chainHg38,271 chainHg38,279 chainHg38,579 chainHg38,632 chainMm10,72 chainMm10,99 chainMm10,157 chainMm10,204 chainMm10,271 chainMm10,279 chainMm10,579 chainMm10,632 chainNetHg38,75 chainNetHg38,102 chainNetHg38,160 chainNetHg38,207 chainNetHg38,274 chainNetHg38,282 chainNetHg38,582 chainNetHg38,635 chainNetMm10,75 chainNetMm10,102 chainNetMm10,160 chainNetMm10,207 chainNetMm10,274 chainNetMm10,282 chainNetMm10,582 chainNetMm10,635 chainNetTarSyr2,75 chainNetTarSyr2,102 chainNetTarSyr2,160 chainNetTarSyr2,207 chainNetTarSyr2,274 chainNetTarSyr2,282 chainNetTarSyr2,582 chainNetTarSyr2,635 chainTarSyr2,72 chainTarSyr2,99 chainTarSyr2,157 chainTarSyr2,204 chainTarSyr2,271 chainTarSyr2,279 chainTarSyr2,579 chainTarSyr2,632 gap,17 gold,19 mrna,1 mrna,4 mrna,19 mrna,388 netHg38,72 netHg38,99 netHg38,157 netHg38,204 netHg38,271 netHg38,279 netHg38,579 netHg38,632 netMm10,72 netMm10,99 netMm10,157 netMm10,204 netMm10,271 netMm10,279 netMm10,579 netMm10,632 netTarSyr2,72 netTarSyr2,99 netTarSyr2,157 netTarSyr2,204 netTarSyr2,271 netTarSyr2,279 netTarSyr2,579 netTarSyr2,632 refSeqComposite,19 refSeqComposite,442 refSeqComposite,464 refSeqComposite,498 refSeqComposite,1234 transMapEnsemblV5,90 transMapEnsemblV5,203 transMapEnsemblV5,334 transMapEstV5,59 transMapEstV5,172 transMapEstV5,303 transMapRefSeqV5,59 transMapRefSeqV5,172 transMapRefSeqV5,303 transMapRnaV5,59 transMapRnaV5,172 transMapRnaV5,303 transMapV5,60 transMapV5,278 transMapV5,409 xenoMrna,29 xenoMrna,467 xenoRefGene,24 xenoRefGene,224 squish nestedRepeats,159 src cpgIslandExt,564 cpgIslandExtUnmasked,567 cpgIslandSuper,564 srcuniq transMapEnsemblV5,424 transMapEstV5,393 transMapRefSeqV5,393 transMapRnaV5,393 transMapV5,499 srprna rmsk,194 staff refSeqComposite,643 refSeqComposite,694 uniprot,42 uniprot,1965 stage uniprot,1228 stages cpgIslandExt,90 cpgIslandExtUnmasked,93 cpgIslandSuper,90 stanke augustusGene,103 augustusGene,251 augustusGene,284 augustusGene,286 augustusGene,316 transMapEnsemblV5,757 transMapEstV5,726 transMapRefSeqV5,726 transMapRnaV5,726 transMapV5,832 start augustusGene,58 cpgIslandExt,33 cpgIslandExtUnmasked,36 cpgIslandSuper,33 refSeqComposite,1559 transMapEnsemblV5,671 transMapEstV5,640 transMapRefSeqV5,640 transMapRnaV5,640 transMapV5,746 uniprot,125 uniprot,209 uniprot,1821 state chainHg38,925 chainHg38,1028 chainMm10,925 chainMm10,1028 chainNetHg38,928 chainNetHg38,1031 chainNetMm10,928 chainNetMm10,1031 chainNetTarSyr2,928 chainNetTarSyr2,1031 chainTarSyr2,925 chainTarSyr2,1028 netHg38,925 netHg38,1028 netMm10,925 netMm10,1028 netTarSyr2,925 netTarSyr2,1028 statistical augustusGene,47 stdin cpgIslandExt,415 cpgIslandExt,420 cpgIslandExtUnmasked,418 cpgIslandExtUnmasked,423 cpgIslandSuper,415 cpgIslandSuper,420 stdout cpgIslandExt,413 cpgIslandExt,417 cpgIslandExtUnmasked,416 cpgIslandExtUnmasked,420 cpgIslandSuper,413 cpgIslandSuper,417 refSeqComposite,1563 transMapEnsemblV5,675 transMapEstV5,644 transMapRefSeqV5,644 transMapRnaV5,644 transMapV5,750 uniprot,1825 stefanie augustusGene,267 step transMapEnsemblV5,307 transMapEstV5,276 transMapRefSeqV5,276 transMapRnaV5,276 transMapV5,382 uniprot,901 uniprot,1155 uniprot,1330 stevens transMapEnsemblV5,723 transMapEstV5,692 transMapRefSeqV5,692 transMapRnaV5,692 transMapV5,798 storage chainHg38,982 chainMm10,982 chainNetHg38,985 chainNetMm10,985 chainNetTarSyr2,985 chainTarSyr2,982 netHg38,982 netMm10,982 netTarSyr2,982 stored refSeqComposite,1479 transMapEnsemblV5,544 transMapEstV5,513 transMapRefSeqV5,513 transMapRnaV5,513 transMapV5,619 uniprot,1733 strand chainHg38,250 chainMm10,250 chainNetHg38,253 chainNetMm10,253 chainNetTarSyr2,253 chainTarSyr2,250 cpgIslandExt,80 cpgIslandExt,84 cpgIslandExtUnmasked,83 cpgIslandExtUnmasked,87 cpgIslandSuper,80 cpgIslandSuper,84 nestedRepeats,144 nestedRepeats,155 netHg38,250 netMm10,250 netTarSyr2,250 xenoMrna,62 strands uniprot,365 strategy uniprot,1120 uniprot,1193 stringency transMapV5,120 strong HLTOGAannotvHg38v1,253 HLTOGAannotvHg38v1,282 structure augustusGene,113 unipStruct,1 unipStruct,6 uniprot,362 uniprot,2037 structures augustusGene,164 genscan,215 studying chainHg38,293 chainMm10,293 chainNetHg38,296 chainNetMm10,296 chainNetTarSyr2,296 chainTarSyr2,293 netHg38,293 netMm10,293 netTarSyr2,293 subcellular uniprot,553 subject refSeqComposite,678 refSeqComposite,703 submit refSeqComposite,118 submitted mrna,453 transMapEnsemblV5,692 transMapEstV5,661 transMapRefSeqV5,661 transMapRnaV5,661 transMapV5,767 xenoMrna,527 submodel augustusGene,331 subsections chainHg38,646 chainMm10,646 chainNetHg38,649 chainNetMm10,649 chainNetTarSyr2,649 chainTarSyr2,646 netHg38,646 netMm10,646 netTarSyr2,646 subsequent transMapEnsemblV5,442 transMapEstV5,411 transMapRefSeqV5,411 transMapRnaV5,411 transMapV5,517 subset microsat,54 mrna,82 ncbiRefSeqCurated,7 ncbiRefSeqPredicted,7 refSeqComposite,212 refSeqComposite,342 refSeqComposite,515 refSeqComposite,520 refSeqComposite,551 refSeqComposite,553 refSeqComposite,583 refSeqComposite,795 transMapEnsemblV5,208 transMapEstV5,177 transMapRefSeqV5,177 transMapRnaV5,177 transMapV5,283 xenoMrna,156 substantial chainHg38,168 chainMm10,168 chainNetHg38,171 chainNetMm10,171 chainNetTarSyr2,171 chainTarSyr2,168 netHg38,168 netMm10,168 netTarSyr2,168 subtrack refSeqComposite,750 refSeqComposite,762 uniprot,411 subtracks chainHg38,29 chainHg38,36 chainMm10,29 chainMm10,36 chainNetHg38,32 chainNetHg38,39 chainNetMm10,32 chainNetMm10,39 chainNetTarSyr2,32 chainNetTarSyr2,39 chainTarSyr2,29 chainTarSyr2,36 netHg38,29 netHg38,36 netMm10,29 netMm10,36 netTarSyr2,29 netTarSyr2,36 refSeqComposite,35 refSeqComposite,163 refSeqComposite,187 refSeqComposite,1399 uniprot,59 uniprot,72 uniprot,520 uniprot,548 subtracts refSeqComposite,179 such chainHg38,860 chainMm10,860 chainNetHg38,863 chainNetMm10,863 chainNetTarSyr2,863 chainTarSyr2,860 cpgIslandExt,65 cpgIslandExtUnmasked,68 cpgIslandSuper,65 netHg38,860 netMm10,860 netTarSyr2,860 refSeqComposite,413 uniprot,306 suffix transMapEnsemblV5,401 transMapEstV5,370 transMapRefSeqV5,370 transMapRnaV5,370 transMapV5,476 uniprot,1255 suggestions refSeqComposite,117 suitable uniprot,1868 suppl augustusGene,336 supported gap,93 sure refSeqComposite,1100 uniprot,1407 swiss-prot uniprot,2025 swissprot unipAliSwissprot,1 unipAliSwissprot,6 uniprot,3 uniprot,24 uniprot,31 uniprot,76 uniprot,109 uniprot,116 uniprot,127 uniprot,414 uniprot,454 uniprot,495 uniprot,623 uniprot,703 uniprot,1373 symp chainHg38,1042 chainMm10,1042 chainNetHg38,1045 chainNetMm10,1045 chainNetTarSyr2,1045 chainTarSyr2,1042 netHg38,1042 netMm10,1042 netTarSyr2,1042 syn chainHg38,523 chainMm10,523 chainNetHg38,526 chainNetMm10,526 chainNetTarSyr2,526 chainTarSyr2,523 netHg38,523 netMm10,523 netTarSyr2,523 transMapEnsemblV5,255 transMapEstV5,224 transMapRefSeqV5,224 transMapRnaV5,224 transMapV5,330 syntenic chainHg38,287 chainHg38,867 chainMm10,287 chainMm10,867 chainNetHg38,290 chainNetHg38,870 chainNetMm10,290 chainNetMm10,870 chainNetTarSyr2,290 chainNetTarSyr2,870 chainTarSyr2,287 chainTarSyr2,867 netHg38,287 netHg38,867 netMm10,287 netMm10,867 netTarSyr2,287 netTarSyr2,867 transMapEnsemblV5,237 transMapEnsemblV5,517 transMapEstV5,206 transMapEstV5,486 transMapRefSeqV5,206 transMapRefSeqV5,486 transMapRnaV5,206 transMapRnaV5,486 transMapV5,312 transMapV5,592 syntenically augustusGene,297 transMapEnsemblV5,76 transMapEnsemblV5,768 transMapEstV5,45 transMapEstV5,737 transMapRefSeqV5,45 transMapRefSeqV5,737 transMapRnaV5,45 transMapRnaV5,737 transMapV5,44 transMapV5,843 synteny chainHg38,32 chainMm10,32 chainNetHg38,35 chainNetMm10,35 chainNetTarSyr2,35 chainTarSyr2,32 netHg38,32 netMm10,32 netTarSyr2,32 transMapEnsemblV5,276 transMapEstV5,245 transMapRefSeqV5,245 transMapRnaV5,245 transMapV5,351 synteny-filtered transMapV5,83 synthesized cpgIslandExt,78 cpgIslandExtUnmasked,81 cpgIslandSuper,78 system chainHg38,79 chainMm10,79 chainNetHg38,82 chainNetMm10,82 chainNetTarSyr2,82 chainTarSyr2,79 netHg38,79 netMm10,79 netTarSyr2,79 refSeqComposite,1468 refSeqComposite,1527 transMapEnsemblV5,633 transMapEstV5,602 transMapRefSeqV5,602 transMapRnaV5,602 transMapV5,708 uniprot,1353 uniprot,1784 systems chainHg38,89 chainMm10,89 chainNetHg38,92 chainNetMm10,92 chainNetTarSyr2,92 chainTarSyr2,89 netHg38,89 netMm10,89 netTarSyr2,89 t cpgIslandExt,437 cpgIslandExt,439 cpgIslandExt,441 cpgIslandExt,444 cpgIslandExt,446 cpgIslandExt,448 cpgIslandExt,450 cpgIslandExt,452 cpgIslandExt,454 cpgIslandExtUnmasked,440 cpgIslandExtUnmasked,442 cpgIslandExtUnmasked,444 cpgIslandExtUnmasked,447 cpgIslandExtUnmasked,449 cpgIslandExtUnmasked,451 cpgIslandExtUnmasked,453 cpgIslandExtUnmasked,455 cpgIslandExtUnmasked,457 cpgIslandSuper,437 cpgIslandSuper,439 cpgIslandSuper,441 cpgIslandSuper,444 cpgIslandSuper,446 cpgIslandSuper,448 cpgIslandSuper,450 cpgIslandSuper,452 cpgIslandSuper,454 ensGene,169 ensGene,181 ensGene,187 refSeqComposite,1795 xenoRefGene,365 t-120-24-175100 chainNetTarSyr2,682 chainTarSyr2,679 netTarSyr2,679 t-123-31-11491 chainMm10,679 chainNetMm10,682 netMm10,679 t-145-40-178100 chainHg38,679 chainNetHg38,682 netHg38,679 table augustusGene,225 cpgIslandExt,521 cpgIslandExtUnmasked,524 cpgIslandSuper,521 ensGene,66 mrna,168 mrna,171 mrna,190 refSeqComposite,1180 refSeqComposite,1313 refSeqComposite,1358 refSeqComposite,1575 transMapEnsemblV5,532 transMapEstV5,501 transMapRefSeqV5,501 transMapRnaV5,501 transMapV5,607 uniprot,1720 windowmaskerSdust,85 xenoMrna,242 xenoMrna,245 xenoMrna,264 tables cpgIslandExt,511 cpgIslandExt,529 cpgIslandExtUnmasked,514 cpgIslandExtUnmasked,532 cpgIslandSuper,511 cpgIslandSuper,529 refSeqComposite,82 refSeqComposite,1319 refSeqComposite,1404 refSeqComposite,1433 uniprot,1301 tablesize chainHg38,709 chainMm10,709 chainNetHg38,712 chainNetMm10,712 chainNetTarSyr2,712 chainTarSyr2,709 netHg38,709 netMm10,709 netTarSyr2,709 taken refSeqComposite,25 xenoRefGene,26 tandem microsat,92 microsat,105 microsat,116 simpleRepeat,4 simpleRepeat,16 simpleRepeat,23 simpleRepeat,76 transMapEnsemblV5,509 transMapEstV5,478 transMapRefSeqV5,478 transMapRnaV5,478 transMapV5,584 targeted transMapEnsemblV5,737 transMapEstV5,706 transMapRefSeqV5,706 transMapRnaV5,706 transMapV5,812 targeting refSeqComposite,584 tarsier chainNetTarSyr2,1 chainNetTarSyr2,4 chainNetTarSyr2,68 chainNetTarSyr2,100 chainNetTarSyr2,153 chainNetTarSyr2,273 chainNetTarSyr2,300 chainNetTarSyr2,581 chainNetTarSyr2,630 chainNetTarSyr2Viewchain,2 chainNetTarSyr2Viewnet,2 chainTarSyr2,1 chainTarSyr2,3 chainTarSyr2,65 chainTarSyr2,97 chainTarSyr2,150 chainTarSyr2,270 chainTarSyr2,297 chainTarSyr2,578 chainTarSyr2,627 netTarSyr2,1 netTarSyr2,3 netTarSyr2,65 netTarSyr2,97 netTarSyr2,150 netTarSyr2,270 netTarSyr2,297 netTarSyr2,578 netTarSyr2,627 tarsius_syrichta-2.0.1 chainNetTarSyr2,7 chainNetTarSyr2,71 chainNetTarSyr2,311 chainNetTarSyr2Viewchain,5 chainNetTarSyr2Viewnet,5 chainTarSyr2,6 chainTarSyr2,68 chainTarSyr2,308 netTarSyr2,6 netTarSyr2,68 netTarSyr2,308 tarsyr2 chainNetTarSyr2,8 chainNetTarSyr2,72 chainNetTarSyr2,312 chainNetTarSyr2Viewchain,6 chainNetTarSyr2Viewnet,6 chainTarSyr2,7 chainTarSyr2,69 chainTarSyr2,309 netTarSyr2,7 netTarSyr2,69 netTarSyr2,309 task mrna,110 xenoMrna,184 tatusova refSeqComposite,1794 xenoRefGene,364 tblastn uniprot,1476 temperature augustusGene,141 ten rmsk,148 tend cpgIslandExt,68 cpgIslandExt,102 cpgIslandExtUnmasked,71 cpgIslandExtUnmasked,105 cpgIslandSuper,68 cpgIslandSuper,102 microsat,37 term mrna,117 xenoMrna,191 terminal rmsk,167 terminology refSeqComposite,1075 terms mrna,161 mrna,207 xenoMrna,235 xenoMrna,281 text mrna,124 mrna,164 mrna,204 uniprot,1763 xenoMrna,198 xenoMrna,238 xenoMrna,278 tgap chainHg38,737 chainMm10,737 chainNetHg38,740 chainNetMm10,740 chainNetTarSyr2,740 chainTarSyr2,737 netHg38,737 netMm10,737 netTarSyr2,737 th transMapEnsemblV5,796 transMapEstV5,765 transMapRefSeqV5,765 transMapRnaV5,765 transMapV5,871 than chainHg38,84 chainHg38,512 chainMm10,84 chainMm10,512 chainNetHg38,87 chainNetHg38,515 chainNetMm10,87 chainNetMm10,515 chainNetTarSyr2,87 chainNetTarSyr2,515 chainTarSyr2,84 chainTarSyr2,512 cpgIslandExt,159 cpgIslandExt,270 cpgIslandExt,275 cpgIslandExtUnmasked,162 cpgIslandExtUnmasked,273 cpgIslandExtUnmasked,278 cpgIslandSuper,159 cpgIslandSuper,270 cpgIslandSuper,275 mrna,229 nestedRepeats,213 nestedRepeats,271 netHg38,84 netHg38,512 netMm10,84 netMm10,512 netTarSyr2,84 netTarSyr2,512 refSeqComposite,1245 transMapEnsemblV5,225 transMapEnsemblV5,376 transMapEstV5,194 transMapEstV5,345 transMapRefSeqV5,194 transMapRefSeqV5,345 transMapRnaV5,194 transMapRnaV5,345 transMapV5,108 transMapV5,149 transMapV5,300 transMapV5,451 xenoMrna,28 xenoMrna,303 xenoRefGene,23 xenoRefGene,235 thank ensGene,150 thanks augustusGene,248 genscan,170 nestedRepeats,303 rmsk,326 uniprot,1974 that HLTOGAannotvHg38v1,28 HLTOGAannotvHg38v1,77 HLTOGAannotvHg38v1,284 chainHg38,20 chainHg38,45 chainHg38,80 chainHg38,141 chainHg38,166 chainHg38,371 chainHg38,398 chainHg38,420 chainHg38,572 chainHg38,830 chainHg38,841 chainMm10,20 chainMm10,45 chainMm10,80 chainMm10,141 chainMm10,166 chainMm10,371 chainMm10,398 chainMm10,420 chainMm10,572 chainMm10,830 chainMm10,841 chainNetHg38,23 chainNetHg38,48 chainNetHg38,83 chainNetHg38,144 chainNetHg38,169 chainNetHg38,374 chainNetHg38,401 chainNetHg38,423 chainNetHg38,575 chainNetHg38,833 chainNetHg38,844 chainNetMm10,23 chainNetMm10,48 chainNetMm10,83 chainNetMm10,144 chainNetMm10,169 chainNetMm10,374 chainNetMm10,401 chainNetMm10,423 chainNetMm10,575 chainNetMm10,833 chainNetMm10,844 chainNetTarSyr2,23 chainNetTarSyr2,48 chainNetTarSyr2,83 chainNetTarSyr2,144 chainNetTarSyr2,169 chainNetTarSyr2,374 chainNetTarSyr2,401 chainNetTarSyr2,423 chainNetTarSyr2,575 chainNetTarSyr2,833 chainNetTarSyr2,844 chainTarSyr2,20 chainTarSyr2,45 chainTarSyr2,80 chainTarSyr2,141 chainTarSyr2,166 chainTarSyr2,371 chainTarSyr2,398 chainTarSyr2,420 chainTarSyr2,572 chainTarSyr2,830 chainTarSyr2,841 cpgIslandExt,114 cpgIslandExt,178 cpgIslandExtUnmasked,117 cpgIslandExtUnmasked,181 cpgIslandSuper,114 cpgIslandSuper,178 genscan,141 gold,75 gold,145 microsat,15 mrna,47 mrna,66 mrna,173 mrna,197 mrna,245 mrna,260 mrna,277 mrna,301 mrna,319 mrna,336 nestedRepeats,265 nestedRepeats,273 netHg38,20 netHg38,45 netHg38,80 netHg38,141 netHg38,166 netHg38,371 netHg38,398 netHg38,420 netHg38,572 netHg38,830 netHg38,841 netMm10,20 netMm10,45 netMm10,80 netMm10,141 netMm10,166 netMm10,371 netMm10,398 netMm10,420 netMm10,572 netMm10,830 netMm10,841 netTarSyr2,20 netTarSyr2,45 netTarSyr2,80 netTarSyr2,141 netTarSyr2,166 netTarSyr2,371 netTarSyr2,398 netTarSyr2,420 netTarSyr2,572 netTarSyr2,830 netTarSyr2,841 refSeqComposite,151 refSeqComposite,171 refSeqComposite,216 refSeqComposite,346 refSeqComposite,389 refSeqComposite,824 refSeqComposite,934 refSeqComposite,1025 refSeqComposite,1033 refSeqComposite,1058 refSeqComposite,1101 refSeqComposite,1622 rmsk,42 rmsk,259 transMapEnsemblV5,118 transMapEnsemblV5,194 transMapEnsemblV5,500 transMapEstV5,87 transMapEstV5,163 transMapEstV5,469 transMapRefSeqV5,87 transMapRefSeqV5,163 transMapRefSeqV5,469 transMapRnaV5,87 transMapRnaV5,163 transMapRnaV5,469 transMapV5,193 transMapV5,269 transMapV5,575 uniprot,167 uniprot,301 uniprot,696 uniprot,734 uniprot,745 uniprot,999 uniprot,1012 uniprot,1169 uniprot,1408 uniprot,1602 uniprot,1624 uniprot,1738 uniprot,1866 xenoMrna,51 xenoMrna,140 xenoMrna,247 xenoMrna,271 xenoMrna,319 xenoMrna,334 xenoMrna,351 xenoMrna,375 xenoMrna,393 xenoMrna,410 xenoRefGene,148 the HLTOGAannotvHg38v1,67 HLTOGAannotvHg38v1,108 HLTOGAannotvHg38v1,120 HLTOGAannotvHg38v1,125 HLTOGAannotvHg38v1,147 HLTOGAannotvHg38v1,169 HLTOGAannotvHg38v1,174 HLTOGAannotvHg38v1,177 HLTOGAannotvHg38v1,181 HLTOGAannotvHg38v1,195 HLTOGAannotvHg38v1,202 HLTOGAannotvHg38v1,216 HLTOGAannotvHg38v1,221 HLTOGAannotvHg38v1,224 HLTOGAannotvHg38v1,228 HLTOGAannotvHg38v1,243 HLTOGAannotvHg38v1,247 HLTOGAannotvHg38v1,257 HLTOGAannotvHg38v1,285 HLTOGAannotvHg38v1,302 HLTOGAannotvHg38v1,307 HLTOGAannotvHg38v1,320 HLTOGAannotvHg38v1,325 augustusGene,20 augustusGene,25 augustusGene,30 augustusGene,38 augustusGene,61 augustusGene,69 augustusGene,81 augustusGene,109 augustusGene,143 augustusGene,165 augustusGene,172 augustusGene,177 augustusGene,185 augustusGene,240 augustusGene,250 augustusGene,255 augustusGene,258 augustusGene,261 augustusGene,272 augustusGene,275 chainHg38,18 chainHg38,37 chainHg38,59 chainHg38,71 chainHg38,119 chainHg38,132 chainHg38,149 chainHg38,156 chainHg38,203 chainHg38,207 chainHg38,233 chainHg38,243 chainHg38,248 chainHg38,256 chainHg38,264 chainHg38,268 chainHg38,278 chainHg38,296 chainHg38,305 chainHg38,319 chainHg38,334 chainHg38,340 chainHg38,343 chainHg38,358 chainHg38,364 chainHg38,368 chainHg38,388 chainHg38,394 chainHg38,408 chainHg38,426 chainHg38,443 chainHg38,446 chainHg38,451 chainHg38,464 chainHg38,477 chainHg38,479 chainHg38,486 chainHg38,489 chainHg38,496 chainHg38,502 chainHg38,515 chainHg38,526 chainHg38,530 chainHg38,533 chainHg38,541 chainHg38,545 chainHg38,551 chainHg38,562 chainHg38,565 chainHg38,577 chainHg38,585 chainHg38,587 chainHg38,595 chainHg38,601 chainHg38,610 chainHg38,613 chainHg38,644 chainHg38,649 chainHg38,658 chainHg38,662 chainHg38,669 chainHg38,692 chainHg38,700 chainHg38,770 chainHg38,774 chainHg38,782 chainHg38,786 chainHg38,790 chainHg38,798 chainHg38,843 chainHg38,853 chainHg38,872 chainHg38,875 chainHg38,887 chainHg38,911 chainHg38,953 chainHg38,959 chainHg38,977 chainHg38,984 chainHg38,996 chainHg38,1005 chainHg38,1026 chainHg38,1066 chainMm10,18 chainMm10,37 chainMm10,59 chainMm10,71 chainMm10,119 chainMm10,132 chainMm10,149 chainMm10,156 chainMm10,203 chainMm10,207 chainMm10,233 chainMm10,243 chainMm10,248 chainMm10,256 chainMm10,264 chainMm10,268 chainMm10,278 chainMm10,296 chainMm10,305 chainMm10,319 chainMm10,334 chainMm10,340 chainMm10,343 chainMm10,358 chainMm10,364 chainMm10,368 chainMm10,388 chainMm10,394 chainMm10,408 chainMm10,426 chainMm10,443 chainMm10,446 chainMm10,451 chainMm10,464 chainMm10,477 chainMm10,479 chainMm10,486 chainMm10,489 chainMm10,496 chainMm10,502 chainMm10,515 chainMm10,526 chainMm10,530 chainMm10,533 chainMm10,541 chainMm10,545 chainMm10,551 chainMm10,562 chainMm10,565 chainMm10,577 chainMm10,585 chainMm10,587 chainMm10,595 chainMm10,601 chainMm10,610 chainMm10,613 chainMm10,644 chainMm10,649 chainMm10,658 chainMm10,662 chainMm10,669 chainMm10,692 chainMm10,700 chainMm10,770 chainMm10,774 chainMm10,782 chainMm10,786 chainMm10,790 chainMm10,798 chainMm10,843 chainMm10,853 chainMm10,872 chainMm10,875 chainMm10,887 chainMm10,911 chainMm10,953 chainMm10,959 chainMm10,977 chainMm10,984 chainMm10,996 chainMm10,1005 chainMm10,1026 chainMm10,1066 chainNetHg38,21 chainNetHg38,40 chainNetHg38,62 chainNetHg38,74 chainNetHg38,122 chainNetHg38,135 chainNetHg38,152 chainNetHg38,159 chainNetHg38,206 chainNetHg38,210 chainNetHg38,236 chainNetHg38,246 chainNetHg38,251 chainNetHg38,259 chainNetHg38,267 chainNetHg38,271 chainNetHg38,281 chainNetHg38,299 chainNetHg38,308 chainNetHg38,322 chainNetHg38,337 chainNetHg38,343 chainNetHg38,346 chainNetHg38,361 chainNetHg38,367 chainNetHg38,371 chainNetHg38,391 chainNetHg38,397 chainNetHg38,411 chainNetHg38,429 chainNetHg38,446 chainNetHg38,449 chainNetHg38,454 chainNetHg38,467 chainNetHg38,480 chainNetHg38,482 chainNetHg38,489 chainNetHg38,492 chainNetHg38,499 chainNetHg38,505 chainNetHg38,518 chainNetHg38,529 chainNetHg38,533 chainNetHg38,536 chainNetHg38,544 chainNetHg38,548 chainNetHg38,554 chainNetHg38,565 chainNetHg38,568 chainNetHg38,580 chainNetHg38,588 chainNetHg38,590 chainNetHg38,598 chainNetHg38,604 chainNetHg38,613 chainNetHg38,616 chainNetHg38,647 chainNetHg38,652 chainNetHg38,661 chainNetHg38,665 chainNetHg38,672 chainNetHg38,695 chainNetHg38,703 chainNetHg38,773 chainNetHg38,777 chainNetHg38,785 chainNetHg38,789 chainNetHg38,793 chainNetHg38,801 chainNetHg38,846 chainNetHg38,856 chainNetHg38,875 chainNetHg38,878 chainNetHg38,890 chainNetHg38,914 chainNetHg38,956 chainNetHg38,962 chainNetHg38,980 chainNetHg38,987 chainNetHg38,999 chainNetHg38,1008 chainNetHg38,1029 chainNetHg38,1069 chainNetMm10,21 chainNetMm10,40 chainNetMm10,62 chainNetMm10,74 chainNetMm10,122 chainNetMm10,135 chainNetMm10,152 chainNetMm10,159 chainNetMm10,206 chainNetMm10,210 chainNetMm10,236 chainNetMm10,246 chainNetMm10,251 chainNetMm10,259 chainNetMm10,267 chainNetMm10,271 chainNetMm10,281 chainNetMm10,299 chainNetMm10,308 chainNetMm10,322 chainNetMm10,337 chainNetMm10,343 chainNetMm10,346 chainNetMm10,361 chainNetMm10,367 chainNetMm10,371 chainNetMm10,391 chainNetMm10,397 chainNetMm10,411 chainNetMm10,429 chainNetMm10,446 chainNetMm10,449 chainNetMm10,454 chainNetMm10,467 chainNetMm10,480 chainNetMm10,482 chainNetMm10,489 chainNetMm10,492 chainNetMm10,499 chainNetMm10,505 chainNetMm10,518 chainNetMm10,529 chainNetMm10,533 chainNetMm10,536 chainNetMm10,544 chainNetMm10,548 chainNetMm10,554 chainNetMm10,565 chainNetMm10,568 chainNetMm10,580 chainNetMm10,588 chainNetMm10,590 chainNetMm10,598 chainNetMm10,604 chainNetMm10,613 chainNetMm10,616 chainNetMm10,647 chainNetMm10,652 chainNetMm10,661 chainNetMm10,665 chainNetMm10,672 chainNetMm10,695 chainNetMm10,703 chainNetMm10,773 chainNetMm10,777 chainNetMm10,785 chainNetMm10,789 chainNetMm10,793 chainNetMm10,801 chainNetMm10,846 chainNetMm10,856 chainNetMm10,875 chainNetMm10,878 chainNetMm10,890 chainNetMm10,914 chainNetMm10,956 chainNetMm10,962 chainNetMm10,980 chainNetMm10,987 chainNetMm10,999 chainNetMm10,1008 chainNetMm10,1029 chainNetMm10,1069 chainNetTarSyr2,21 chainNetTarSyr2,40 chainNetTarSyr2,62 chainNetTarSyr2,74 chainNetTarSyr2,122 chainNetTarSyr2,135 chainNetTarSyr2,152 chainNetTarSyr2,159 chainNetTarSyr2,206 chainNetTarSyr2,210 chainNetTarSyr2,236 chainNetTarSyr2,246 chainNetTarSyr2,251 chainNetTarSyr2,259 chainNetTarSyr2,267 chainNetTarSyr2,271 chainNetTarSyr2,281 chainNetTarSyr2,299 chainNetTarSyr2,308 chainNetTarSyr2,322 chainNetTarSyr2,337 chainNetTarSyr2,343 chainNetTarSyr2,346 chainNetTarSyr2,361 chainNetTarSyr2,367 chainNetTarSyr2,371 chainNetTarSyr2,391 chainNetTarSyr2,397 chainNetTarSyr2,411 chainNetTarSyr2,429 chainNetTarSyr2,446 chainNetTarSyr2,449 chainNetTarSyr2,454 chainNetTarSyr2,467 chainNetTarSyr2,480 chainNetTarSyr2,482 chainNetTarSyr2,489 chainNetTarSyr2,492 chainNetTarSyr2,499 chainNetTarSyr2,505 chainNetTarSyr2,518 chainNetTarSyr2,529 chainNetTarSyr2,533 chainNetTarSyr2,536 chainNetTarSyr2,544 chainNetTarSyr2,548 chainNetTarSyr2,554 chainNetTarSyr2,565 chainNetTarSyr2,568 chainNetTarSyr2,580 chainNetTarSyr2,588 chainNetTarSyr2,590 chainNetTarSyr2,598 chainNetTarSyr2,604 chainNetTarSyr2,613 chainNetTarSyr2,616 chainNetTarSyr2,647 chainNetTarSyr2,652 chainNetTarSyr2,661 chainNetTarSyr2,665 chainNetTarSyr2,672 chainNetTarSyr2,695 chainNetTarSyr2,703 chainNetTarSyr2,773 chainNetTarSyr2,777 chainNetTarSyr2,785 chainNetTarSyr2,789 chainNetTarSyr2,793 chainNetTarSyr2,801 chainNetTarSyr2,846 chainNetTarSyr2,856 chainNetTarSyr2,875 chainNetTarSyr2,878 chainNetTarSyr2,890 chainNetTarSyr2,914 chainNetTarSyr2,956 chainNetTarSyr2,962 chainNetTarSyr2,980 chainNetTarSyr2,987 chainNetTarSyr2,999 chainNetTarSyr2,1008 chainNetTarSyr2,1029 chainNetTarSyr2,1069 chainTarSyr2,18 chainTarSyr2,37 chainTarSyr2,59 chainTarSyr2,71 chainTarSyr2,119 chainTarSyr2,132 chainTarSyr2,149 chainTarSyr2,156 chainTarSyr2,203 chainTarSyr2,207 chainTarSyr2,233 chainTarSyr2,243 chainTarSyr2,248 chainTarSyr2,256 chainTarSyr2,264 chainTarSyr2,268 chainTarSyr2,278 chainTarSyr2,296 chainTarSyr2,305 chainTarSyr2,319 chainTarSyr2,334 chainTarSyr2,340 chainTarSyr2,343 chainTarSyr2,358 chainTarSyr2,364 chainTarSyr2,368 chainTarSyr2,388 chainTarSyr2,394 chainTarSyr2,408 chainTarSyr2,426 chainTarSyr2,443 chainTarSyr2,446 chainTarSyr2,451 chainTarSyr2,464 chainTarSyr2,477 chainTarSyr2,479 chainTarSyr2,486 chainTarSyr2,489 chainTarSyr2,496 chainTarSyr2,502 chainTarSyr2,515 chainTarSyr2,526 chainTarSyr2,530 chainTarSyr2,533 chainTarSyr2,541 chainTarSyr2,545 chainTarSyr2,551 chainTarSyr2,562 chainTarSyr2,565 chainTarSyr2,577 chainTarSyr2,585 chainTarSyr2,587 chainTarSyr2,595 chainTarSyr2,601 chainTarSyr2,610 chainTarSyr2,613 chainTarSyr2,644 chainTarSyr2,649 chainTarSyr2,658 chainTarSyr2,662 chainTarSyr2,669 chainTarSyr2,692 chainTarSyr2,700 chainTarSyr2,770 chainTarSyr2,774 chainTarSyr2,782 chainTarSyr2,786 chainTarSyr2,790 chainTarSyr2,798 chainTarSyr2,843 chainTarSyr2,853 chainTarSyr2,872 chainTarSyr2,875 chainTarSyr2,887 chainTarSyr2,911 chainTarSyr2,953 chainTarSyr2,959 chainTarSyr2,977 chainTarSyr2,984 chainTarSyr2,996 chainTarSyr2,1005 chainTarSyr2,1026 chainTarSyr2,1066 cpgIslandExt,62 cpgIslandExt,76 cpgIslandExt,82 cpgIslandExt,88 cpgIslandExt,111 cpgIslandExt,142 cpgIslandExt,163 cpgIslandExt,168 cpgIslandExt,172 cpgIslandExt,190 cpgIslandExt,197 cpgIslandExt,201 cpgIslandExt,207 cpgIslandExt,211 cpgIslandExt,215 cpgIslandExt,219 cpgIslandExt,231 cpgIslandExt,259 cpgIslandExt,284 cpgIslandExt,288 cpgIslandExt,291 cpgIslandExt,298 cpgIslandExt,300 cpgIslandExt,310 cpgIslandExt,313 cpgIslandExt,317 cpgIslandExt,324 cpgIslandExt,332 cpgIslandExt,336 cpgIslandExt,342 cpgIslandExt,344 cpgIslandExt,348 cpgIslandExt,355 cpgIslandExt,359 cpgIslandExt,361 cpgIslandExt,372 cpgIslandExt,398 cpgIslandExt,401 cpgIslandExt,407 cpgIslandExt,490 cpgIslandExt,501 cpgIslandExt,517 cpgIslandExt,520 cpgIslandExt,524 cpgIslandExt,528 cpgIslandExt,554 cpgIslandExt,557 cpgIslandExt,567 cpgIslandExtUnmasked,65 cpgIslandExtUnmasked,79 cpgIslandExtUnmasked,85 cpgIslandExtUnmasked,91 cpgIslandExtUnmasked,114 cpgIslandExtUnmasked,145 cpgIslandExtUnmasked,166 cpgIslandExtUnmasked,171 cpgIslandExtUnmasked,175 cpgIslandExtUnmasked,193 cpgIslandExtUnmasked,200 cpgIslandExtUnmasked,204 cpgIslandExtUnmasked,210 cpgIslandExtUnmasked,214 cpgIslandExtUnmasked,218 cpgIslandExtUnmasked,222 cpgIslandExtUnmasked,234 cpgIslandExtUnmasked,262 cpgIslandExtUnmasked,287 cpgIslandExtUnmasked,291 cpgIslandExtUnmasked,294 cpgIslandExtUnmasked,301 cpgIslandExtUnmasked,303 cpgIslandExtUnmasked,313 cpgIslandExtUnmasked,316 cpgIslandExtUnmasked,320 cpgIslandExtUnmasked,327 cpgIslandExtUnmasked,335 cpgIslandExtUnmasked,339 cpgIslandExtUnmasked,345 cpgIslandExtUnmasked,347 cpgIslandExtUnmasked,351 cpgIslandExtUnmasked,358 cpgIslandExtUnmasked,362 cpgIslandExtUnmasked,364 cpgIslandExtUnmasked,375 cpgIslandExtUnmasked,401 cpgIslandExtUnmasked,404 cpgIslandExtUnmasked,410 cpgIslandExtUnmasked,493 cpgIslandExtUnmasked,504 cpgIslandExtUnmasked,520 cpgIslandExtUnmasked,523 cpgIslandExtUnmasked,527 cpgIslandExtUnmasked,531 cpgIslandExtUnmasked,557 cpgIslandExtUnmasked,560 cpgIslandExtUnmasked,570 cpgIslandSuper,62 cpgIslandSuper,76 cpgIslandSuper,82 cpgIslandSuper,88 cpgIslandSuper,111 cpgIslandSuper,142 cpgIslandSuper,163 cpgIslandSuper,168 cpgIslandSuper,172 cpgIslandSuper,190 cpgIslandSuper,197 cpgIslandSuper,201 cpgIslandSuper,207 cpgIslandSuper,211 cpgIslandSuper,215 cpgIslandSuper,219 cpgIslandSuper,231 cpgIslandSuper,259 cpgIslandSuper,284 cpgIslandSuper,288 cpgIslandSuper,291 cpgIslandSuper,298 cpgIslandSuper,300 cpgIslandSuper,310 cpgIslandSuper,313 cpgIslandSuper,317 cpgIslandSuper,324 cpgIslandSuper,332 cpgIslandSuper,336 cpgIslandSuper,342 cpgIslandSuper,344 cpgIslandSuper,348 cpgIslandSuper,355 cpgIslandSuper,359 cpgIslandSuper,361 cpgIslandSuper,372 cpgIslandSuper,398 cpgIslandSuper,401 cpgIslandSuper,407 cpgIslandSuper,490 cpgIslandSuper,501 cpgIslandSuper,517 cpgIslandSuper,520 cpgIslandSuper,524 cpgIslandSuper,528 cpgIslandSuper,554 cpgIslandSuper,557 cpgIslandSuper,567 ensGene,21 ensGene,34 ensGene,51 ensGene,65 ensGene,69 ensGene,75 ensGene,101 ensGene,107 ensGene,190 gap,11 gap,14 gap,27 gap,39 gap,42 gap,49 gap,54 gap,56 gap,62 gap,65 gap,78 gap,84 gap,90 gap,110 gap,114 gap,119 gc5BaseBw,12 gc5BaseBw,17 gc5BaseBw,53 gc5BaseBw,57 gc5BaseBw,68 gc5BaseBw,72 genscan,16 genscan,23 genscan,38 genscan,53 genscan,68 genscan,75 genscan,80 genscan,91 genscan,115 genscan,135 genscan,139 genscan,151 genscan,155 genscan,176 gold,12 gold,16 gold,29 gold,41 gold,48 gold,53 gold,55 gold,61 gold,64 gold,73 gold,78 gold,87 gold,104 gold,109 gold,115 gold,129 gold,134 microsat,43 microsat,46 microsat,56 microsat,82 microsat,84 microsat,91 mrna,13 mrna,25 mrna,34 mrna,45 mrna,57 mrna,72 mrna,76 mrna,86 mrna,98 mrna,108 mrna,113 mrna,123 mrna,128 mrna,135 mrna,146 mrna,149 mrna,152 mrna,157 mrna,167 mrna,170 mrna,176 mrna,186 mrna,193 mrna,202 mrna,223 mrna,233 mrna,265 mrna,272 mrna,286 mrna,295 mrna,303 mrna,312 mrna,321 mrna,338 mrna,345 mrna,356 mrna,379 mrna,394 mrna,397 mrna,408 mrna,411 mrna,427 mrna,436 mrna,442 mrna,455 mrna,521 ncbiRefSeqGenomicDiff,9 nestedRepeats,25 nestedRepeats,28 nestedRepeats,44 nestedRepeats,51 nestedRepeats,65 nestedRepeats,69 nestedRepeats,76 nestedRepeats,100 nestedRepeats,105 nestedRepeats,134 nestedRepeats,142 nestedRepeats,149 nestedRepeats,154 nestedRepeats,185 nestedRepeats,193 nestedRepeats,201 nestedRepeats,215 nestedRepeats,220 nestedRepeats,235 nestedRepeats,242 nestedRepeats,248 nestedRepeats,253 nestedRepeats,278 nestedRepeats,284 nestedRepeats,297 nestedRepeats,313 nestedRepeats,397 nestedRepeats,403 netHg38,18 netHg38,37 netHg38,59 netHg38,71 netHg38,119 netHg38,132 netHg38,149 netHg38,156 netHg38,203 netHg38,207 netHg38,233 netHg38,243 netHg38,248 netHg38,256 netHg38,264 netHg38,268 netHg38,278 netHg38,296 netHg38,305 netHg38,319 netHg38,334 netHg38,340 netHg38,343 netHg38,358 netHg38,364 netHg38,368 netHg38,388 netHg38,394 netHg38,408 netHg38,426 netHg38,443 netHg38,446 netHg38,451 netHg38,464 netHg38,477 netHg38,479 netHg38,486 netHg38,489 netHg38,496 netHg38,502 netHg38,515 netHg38,526 netHg38,530 netHg38,533 netHg38,541 netHg38,545 netHg38,551 netHg38,562 netHg38,565 netHg38,577 netHg38,585 netHg38,587 netHg38,595 netHg38,601 netHg38,610 netHg38,613 netHg38,644 netHg38,649 netHg38,658 netHg38,662 netHg38,669 netHg38,692 netHg38,700 netHg38,770 netHg38,774 netHg38,782 netHg38,786 netHg38,790 netHg38,798 netHg38,843 netHg38,853 netHg38,872 netHg38,875 netHg38,887 netHg38,911 netHg38,953 netHg38,959 netHg38,977 netHg38,984 netHg38,996 netHg38,1005 netHg38,1026 netHg38,1066 netMm10,18 netMm10,37 netMm10,59 netMm10,71 netMm10,119 netMm10,132 netMm10,149 netMm10,156 netMm10,203 netMm10,207 netMm10,233 netMm10,243 netMm10,248 netMm10,256 netMm10,264 netMm10,268 netMm10,278 netMm10,296 netMm10,305 netMm10,319 netMm10,334 netMm10,340 netMm10,343 netMm10,358 netMm10,364 netMm10,368 netMm10,388 netMm10,394 netMm10,408 netMm10,426 netMm10,443 netMm10,446 netMm10,451 netMm10,464 netMm10,477 netMm10,479 netMm10,486 netMm10,489 netMm10,496 netMm10,502 netMm10,515 netMm10,526 netMm10,530 netMm10,533 netMm10,541 netMm10,545 netMm10,551 netMm10,562 netMm10,565 netMm10,577 netMm10,585 netMm10,587 netMm10,595 netMm10,601 netMm10,610 netMm10,613 netMm10,644 netMm10,649 netMm10,658 netMm10,662 netMm10,669 netMm10,692 netMm10,700 netMm10,770 netMm10,774 netMm10,782 netMm10,786 netMm10,790 netMm10,798 netMm10,843 netMm10,853 netMm10,872 netMm10,875 netMm10,887 netMm10,911 netMm10,953 netMm10,959 netMm10,977 netMm10,984 netMm10,996 netMm10,1005 netMm10,1026 netMm10,1066 netTarSyr2,18 netTarSyr2,37 netTarSyr2,59 netTarSyr2,71 netTarSyr2,119 netTarSyr2,132 netTarSyr2,149 netTarSyr2,156 netTarSyr2,203 netTarSyr2,207 netTarSyr2,233 netTarSyr2,243 netTarSyr2,248 netTarSyr2,256 netTarSyr2,264 netTarSyr2,268 netTarSyr2,278 netTarSyr2,296 netTarSyr2,305 netTarSyr2,319 netTarSyr2,334 netTarSyr2,340 netTarSyr2,343 netTarSyr2,358 netTarSyr2,364 netTarSyr2,368 netTarSyr2,388 netTarSyr2,394 netTarSyr2,408 netTarSyr2,426 netTarSyr2,443 netTarSyr2,446 netTarSyr2,451 netTarSyr2,464 netTarSyr2,477 netTarSyr2,479 netTarSyr2,486 netTarSyr2,489 netTarSyr2,496 netTarSyr2,502 netTarSyr2,515 netTarSyr2,526 netTarSyr2,530 netTarSyr2,533 netTarSyr2,541 netTarSyr2,545 netTarSyr2,551 netTarSyr2,562 netTarSyr2,565 netTarSyr2,577 netTarSyr2,585 netTarSyr2,587 netTarSyr2,595 netTarSyr2,601 netTarSyr2,610 netTarSyr2,613 netTarSyr2,644 netTarSyr2,649 netTarSyr2,658 netTarSyr2,662 netTarSyr2,669 netTarSyr2,692 netTarSyr2,700 netTarSyr2,770 netTarSyr2,774 netTarSyr2,782 netTarSyr2,786 netTarSyr2,790 netTarSyr2,798 netTarSyr2,843 netTarSyr2,853 netTarSyr2,872 netTarSyr2,875 netTarSyr2,887 netTarSyr2,911 netTarSyr2,953 netTarSyr2,959 netTarSyr2,977 netTarSyr2,984 netTarSyr2,996 netTarSyr2,1005 netTarSyr2,1026 netTarSyr2,1066 refSeqComposite,12 refSeqComposite,27 refSeqComposite,43 refSeqComposite,52 refSeqComposite,56 refSeqComposite,66 refSeqComposite,90 refSeqComposite,98 refSeqComposite,133 refSeqComposite,165 refSeqComposite,169 refSeqComposite,185 refSeqComposite,240 refSeqComposite,281 refSeqComposite,284 refSeqComposite,290 refSeqComposite,307 refSeqComposite,313 refSeqComposite,325 refSeqComposite,333 refSeqComposite,369 refSeqComposite,373 refSeqComposite,386 refSeqComposite,393 refSeqComposite,398 refSeqComposite,402 refSeqComposite,441 refSeqComposite,447 refSeqComposite,451 refSeqComposite,463 refSeqComposite,497 refSeqComposite,507 refSeqComposite,529 refSeqComposite,560 refSeqComposite,571 refSeqComposite,579 refSeqComposite,587 refSeqComposite,599 refSeqComposite,606 refSeqComposite,610 refSeqComposite,614 refSeqComposite,635 refSeqComposite,648 refSeqComposite,658 refSeqComposite,671 refSeqComposite,682 refSeqComposite,696 refSeqComposite,711 refSeqComposite,716 refSeqComposite,732 refSeqComposite,736 refSeqComposite,739 refSeqComposite,745 refSeqComposite,752 refSeqComposite,757 refSeqComposite,761 refSeqComposite,774 refSeqComposite,780 refSeqComposite,788 refSeqComposite,800 refSeqComposite,811 refSeqComposite,839 refSeqComposite,844 refSeqComposite,859 refSeqComposite,868 refSeqComposite,879 refSeqComposite,884 refSeqComposite,888 refSeqComposite,907 refSeqComposite,913 refSeqComposite,921 refSeqComposite,927 refSeqComposite,977 refSeqComposite,1001 refSeqComposite,1005 refSeqComposite,1008 refSeqComposite,1012 refSeqComposite,1016 refSeqComposite,1051 refSeqComposite,1063 refSeqComposite,1110 refSeqComposite,1115 refSeqComposite,1121 refSeqComposite,1130 refSeqComposite,1144 refSeqComposite,1159 refSeqComposite,1176 refSeqComposite,1185 refSeqComposite,1190 refSeqComposite,1198 refSeqComposite,1212 refSeqComposite,1220 refSeqComposite,1233 refSeqComposite,1257 refSeqComposite,1260 refSeqComposite,1276 refSeqComposite,1285 refSeqComposite,1292 refSeqComposite,1310 refSeqComposite,1318 refSeqComposite,1339 refSeqComposite,1346 refSeqComposite,1367 refSeqComposite,1370 refSeqComposite,1387 refSeqComposite,1397 refSeqComposite,1426 refSeqComposite,1449 refSeqComposite,1465 refSeqComposite,1470 refSeqComposite,1473 refSeqComposite,1498 refSeqComposite,1516 refSeqComposite,1529 refSeqComposite,1547 refSeqComposite,1572 refSeqComposite,1577 refSeqComposite,1581 refSeqComposite,1593 refSeqComposite,1598 refSeqComposite,1602 refSeqComposite,1606 refSeqComposite,1612 refSeqComposite,1644 refSeqComposite,1649 refSeqComposite,1652 refSeqComposite,1659 refSeqComposite,1669 refSeqComposite,1698 refSeqComposite,1727 refSeqComposite,1735 rmsk,33 rmsk,40 rmsk,46 rmsk,60 rmsk,66 rmsk,75 rmsk,80 rmsk,87 rmsk,101 rmsk,118 rmsk,204 rmsk,210 rmsk,214 rmsk,229 rmsk,231 rmsk,236 rmsk,238 rmsk,244 rmsk,247 rmsk,260 rmsk,265 rmsk,271 rmsk,274 rmsk,281 rmsk,291 rmsk,320 rmsk,336 rmsk,420 rmsk,426 simpleRepeat,60 transMapEnsemblV5,24 transMapEnsemblV5,34 transMapEnsemblV5,71 transMapEnsemblV5,86 transMapEnsemblV5,99 transMapEnsemblV5,120 transMapEnsemblV5,127 transMapEnsemblV5,162 transMapEnsemblV5,179 transMapEnsemblV5,202 transMapEnsemblV5,210 transMapEnsemblV5,253 transMapEnsemblV5,257 transMapEnsemblV5,261 transMapEnsemblV5,273 transMapEnsemblV5,279 transMapEnsemblV5,296 transMapEnsemblV5,304 transMapEnsemblV5,311 transMapEnsemblV5,313 transMapEnsemblV5,324 transMapEnsemblV5,329 transMapEnsemblV5,333 transMapEnsemblV5,342 transMapEnsemblV5,346 transMapEnsemblV5,348 transMapEnsemblV5,379 transMapEnsemblV5,406 transMapEnsemblV5,416 transMapEnsemblV5,419 transMapEnsemblV5,441 transMapEnsemblV5,450 transMapEnsemblV5,463 transMapEnsemblV5,473 transMapEnsemblV5,485 transMapEnsemblV5,506 transMapEnsemblV5,520 transMapEnsemblV5,531 transMapEnsemblV5,535 transMapEnsemblV5,541 transMapEnsemblV5,580 transMapEnsemblV5,588 transMapEnsemblV5,606 transMapEnsemblV5,622 transMapEnsemblV5,645 transMapEnsemblV5,694 transMapEnsemblV5,706 transMapEnsemblV5,808 transMapEstV5,22 transMapEstV5,32 transMapEstV5,40 transMapEstV5,55 transMapEstV5,68 transMapEstV5,89 transMapEstV5,96 transMapEstV5,131 transMapEstV5,148 transMapEstV5,171 transMapEstV5,179 transMapEstV5,222 transMapEstV5,226 transMapEstV5,230 transMapEstV5,242 transMapEstV5,248 transMapEstV5,265 transMapEstV5,273 transMapEstV5,280 transMapEstV5,282 transMapEstV5,293 transMapEstV5,298 transMapEstV5,302 transMapEstV5,311 transMapEstV5,315 transMapEstV5,317 transMapEstV5,348 transMapEstV5,375 transMapEstV5,385 transMapEstV5,388 transMapEstV5,410 transMapEstV5,419 transMapEstV5,432 transMapEstV5,442 transMapEstV5,454 transMapEstV5,475 transMapEstV5,489 transMapEstV5,500 transMapEstV5,504 transMapEstV5,510 transMapEstV5,549 transMapEstV5,557 transMapEstV5,575 transMapEstV5,591 transMapEstV5,614 transMapEstV5,663 transMapEstV5,675 transMapEstV5,777 transMapRefSeqV5,22 transMapRefSeqV5,32 transMapRefSeqV5,40 transMapRefSeqV5,55 transMapRefSeqV5,68 transMapRefSeqV5,89 transMapRefSeqV5,96 transMapRefSeqV5,131 transMapRefSeqV5,148 transMapRefSeqV5,171 transMapRefSeqV5,179 transMapRefSeqV5,222 transMapRefSeqV5,226 transMapRefSeqV5,230 transMapRefSeqV5,242 transMapRefSeqV5,248 transMapRefSeqV5,265 transMapRefSeqV5,273 transMapRefSeqV5,280 transMapRefSeqV5,282 transMapRefSeqV5,293 transMapRefSeqV5,298 transMapRefSeqV5,302 transMapRefSeqV5,311 transMapRefSeqV5,315 transMapRefSeqV5,317 transMapRefSeqV5,348 transMapRefSeqV5,375 transMapRefSeqV5,385 transMapRefSeqV5,388 transMapRefSeqV5,410 transMapRefSeqV5,419 transMapRefSeqV5,432 transMapRefSeqV5,442 transMapRefSeqV5,454 transMapRefSeqV5,475 transMapRefSeqV5,489 transMapRefSeqV5,500 transMapRefSeqV5,504 transMapRefSeqV5,510 transMapRefSeqV5,549 transMapRefSeqV5,557 transMapRefSeqV5,575 transMapRefSeqV5,591 transMapRefSeqV5,614 transMapRefSeqV5,663 transMapRefSeqV5,675 transMapRefSeqV5,777 transMapRnaV5,22 transMapRnaV5,32 transMapRnaV5,40 transMapRnaV5,55 transMapRnaV5,68 transMapRnaV5,89 transMapRnaV5,96 transMapRnaV5,131 transMapRnaV5,148 transMapRnaV5,171 transMapRnaV5,179 transMapRnaV5,222 transMapRnaV5,226 transMapRnaV5,230 transMapRnaV5,242 transMapRnaV5,248 transMapRnaV5,265 transMapRnaV5,273 transMapRnaV5,280 transMapRnaV5,282 transMapRnaV5,293 transMapRnaV5,298 transMapRnaV5,302 transMapRnaV5,311 transMapRnaV5,315 transMapRnaV5,317 transMapRnaV5,348 transMapRnaV5,375 transMapRnaV5,385 transMapRnaV5,388 transMapRnaV5,410 transMapRnaV5,419 transMapRnaV5,432 transMapRnaV5,442 transMapRnaV5,454 transMapRnaV5,475 transMapRnaV5,489 transMapRnaV5,500 transMapRnaV5,504 transMapRnaV5,510 transMapRnaV5,549 transMapRnaV5,557 transMapRnaV5,575 transMapRnaV5,591 transMapRnaV5,614 transMapRnaV5,663 transMapRnaV5,675 transMapRnaV5,777 transMapV5,21 transMapV5,31 transMapV5,39 transMapV5,56 transMapV5,92 transMapV5,99 transMapV5,104 transMapV5,122 transMapV5,127 transMapV5,133 transMapV5,137 transMapV5,174 transMapV5,195 transMapV5,202 transMapV5,237 transMapV5,254 transMapV5,277 transMapV5,285 transMapV5,328 transMapV5,332 transMapV5,336 transMapV5,348 transMapV5,354 transMapV5,371 transMapV5,379 transMapV5,386 transMapV5,388 transMapV5,399 transMapV5,404 transMapV5,408 transMapV5,417 transMapV5,421 transMapV5,423 transMapV5,454 transMapV5,481 transMapV5,491 transMapV5,494 transMapV5,516 transMapV5,525 transMapV5,538 transMapV5,548 transMapV5,560 transMapV5,581 transMapV5,595 transMapV5,606 transMapV5,610 transMapV5,616 transMapV5,655 transMapV5,663 transMapV5,681 transMapV5,697 transMapV5,720 transMapV5,769 transMapV5,781 transMapV5,883 ucscToINSDC,26 ucscToINSDC,33 ucscToINSDC,38 ucscToINSDC,43 ucscToRefSeq,21 ucscToRefSeq,27 ucscToRefSeq,32 ucscToRefSeq,37 uniprot,22 uniprot,40 uniprot,53 uniprot,69 uniprot,81 uniprot,87 uniprot,94 uniprot,102 uniprot,119 uniprot,184 uniprot,202 uniprot,215 uniprot,233 uniprot,259 uniprot,270 uniprot,281 uniprot,308 uniprot,379 uniprot,410 uniprot,421 uniprot,428 uniprot,444 uniprot,463 uniprot,485 uniprot,493 uniprot,510 uniprot,527 uniprot,534 uniprot,539 uniprot,543 uniprot,547 uniprot,562 uniprot,571 uniprot,607 uniprot,640 uniprot,649 uniprot,668 uniprot,698 uniprot,748 uniprot,785 uniprot,789 uniprot,791 uniprot,797 uniprot,802 uniprot,810 uniprot,812 uniprot,819 uniprot,832 uniprot,836 uniprot,855 uniprot,873 uniprot,883 uniprot,903 uniprot,913 uniprot,923 uniprot,927 uniprot,935 uniprot,944 uniprot,947 uniprot,953 uniprot,961 uniprot,969 uniprot,1009 uniprot,1036 uniprot,1039 uniprot,1054 uniprot,1090 uniprot,1112 uniprot,1126 uniprot,1136 uniprot,1140 uniprot,1156 uniprot,1172 uniprot,1212 uniprot,1221 uniprot,1243 uniprot,1253 uniprot,1267 uniprot,1273 uniprot,1278 uniprot,1294 uniprot,1303 uniprot,1307 uniprot,1321 uniprot,1332 uniprot,1339 uniprot,1358 uniprot,1372 uniprot,1376 uniprot,1384 uniprot,1388 uniprot,1409 uniprot,1414 uniprot,1428 uniprot,1431 uniprot,1462 uniprot,1508 uniprot,1512 uniprot,1519 uniprot,1522 uniprot,1527 uniprot,1535 uniprot,1547 uniprot,1574 uniprot,1582 uniprot,1588 uniprot,1592 uniprot,1595 uniprot,1606 uniprot,1609 uniprot,1612 uniprot,1618 uniprot,1621 uniprot,1628 uniprot,1640 uniprot,1664 uniprot,1667 uniprot,1678 uniprot,1681 uniprot,1701 uniprot,1707 uniprot,1711 uniprot,1719 uniprot,1723 uniprot,1729 uniprot,1743 uniprot,1746 uniprot,1753 uniprot,1773 uniprot,1796 uniprot,1857 uniprot,1861 uniprot,1893 uniprot,1963 uniprot,1988 uniprot,1992 uniprot,2024 uniprot,2029 windowmaskerSdust,22 windowmaskerSdust,28 windowmaskerSdust,32 windowmaskerSdust,36 windowmaskerSdust,42 windowmaskerSdust,55 windowmaskerSdust,74 windowmaskerSdust,81 xenoMrna,38 xenoMrna,49 xenoMrna,61 xenoMrna,71 xenoMrna,74 xenoMrna,77 xenoMrna,84 xenoMrna,92 xenoMrna,96 xenoMrna,99 xenoMrna,105 xenoMrna,123 xenoMrna,128 xenoMrna,131 xenoMrna,146 xenoMrna,150 xenoMrna,160 xenoMrna,172 xenoMrna,182 xenoMrna,187 xenoMrna,197 xenoMrna,202 xenoMrna,209 xenoMrna,220 xenoMrna,223 xenoMrna,226 xenoMrna,231 xenoMrna,241 xenoMrna,244 xenoMrna,250 xenoMrna,260 xenoMrna,267 xenoMrna,276 xenoMrna,297 xenoMrna,307 xenoMrna,339 xenoMrna,346 xenoMrna,360 xenoMrna,369 xenoMrna,377 xenoMrna,386 xenoMrna,395 xenoMrna,412 xenoMrna,419 xenoMrna,430 xenoMrna,453 xenoMrna,461 xenoMrna,466 xenoMrna,481 xenoMrna,484 xenoMrna,501 xenoMrna,510 xenoMrna,516 xenoMrna,529 xenoMrna,595 xenoRefGene,28 xenoRefGene,35 xenoRefGene,50 xenoRefGene,57 xenoRefGene,61 xenoRefGene,65 xenoRefGene,76 xenoRefGene,91 xenoRefGene,94 xenoRefGene,97 xenoRefGene,111 xenoRefGene,117 xenoRefGene,122 xenoRefGene,127 xenoRefGene,135 xenoRefGene,163 xenoRefGene,168 xenoRefGene,183 xenoRefGene,198 xenoRefGene,211 xenoRefGene,218 xenoRefGene,223 xenoRefGene,247 xenoRefGene,250 xenoRefGene,266 xenoRefGene,275 xenoRefGene,298 their nestedRepeats,190 uniprot,62 uniprot,723 uniprot,1101 them chainHg38,805 chainMm10,805 chainNetHg38,808 chainNetMm10,808 chainNetTarSyr2,808 chainTarSyr2,805 cpgIslandExt,126 cpgIslandExtUnmasked,129 cpgIslandSuper,126 netHg38,805 netMm10,805 netTarSyr2,805 rmsk,318 uniprot,20 uniprot,173 uniprot,483 then chainHg38,655 chainHg38,794 chainHg38,879 chainMm10,655 chainMm10,794 chainMm10,879 chainNetHg38,658 chainNetHg38,797 chainNetHg38,882 chainNetMm10,658 chainNetMm10,797 chainNetMm10,882 chainNetTarSyr2,658 chainNetTarSyr2,797 chainNetTarSyr2,882 chainTarSyr2,655 chainTarSyr2,794 chainTarSyr2,879 cpgIslandExt,256 cpgIslandExtUnmasked,259 cpgIslandSuper,256 nestedRepeats,232 netHg38,655 netHg38,794 netHg38,879 netMm10,655 netMm10,794 netMm10,879 netTarSyr2,655 netTarSyr2,794 netTarSyr2,879 transMapV5,130 uniprot,1083 uniprot,1516 there HLTOGAannotvHg38v1,237 HLTOGAannotvHg38v1,280 cpgIslandExt,120 cpgIslandExtUnmasked,123 cpgIslandSuper,120 transMapEnsemblV5,453 transMapEstV5,422 transMapRefSeqV5,422 transMapRnaV5,422 transMapV5,528 uniprot,705 uniprot,1092 xenoMrna,117 therefore gold,123 refSeqComposite,1635 uniprot,968 uniprot,1145 these HLTOGAannotvHg38v1,158 HLTOGAannotvHg38v1,187 HLTOGAannotvHg38v1,261 augustusGene,95 augustusGene,190 chainHg38,52 chainHg38,102 chainHg38,413 chainHg38,667 chainMm10,52 chainMm10,102 chainMm10,413 chainMm10,667 chainNetHg38,55 chainNetHg38,105 chainNetHg38,416 chainNetHg38,670 chainNetMm10,55 chainNetMm10,105 chainNetMm10,416 chainNetMm10,670 chainNetTarSyr2,55 chainNetTarSyr2,105 chainNetTarSyr2,416 chainNetTarSyr2,670 chainTarSyr2,52 chainTarSyr2,102 chainTarSyr2,413 chainTarSyr2,667 ensGene,10 ensGene,154 microsat,24 nestedRepeats,262 nestedRepeats,266 netHg38,52 netHg38,102 netHg38,413 netHg38,667 netMm10,52 netMm10,102 netMm10,413 netMm10,667 netTarSyr2,52 netTarSyr2,102 netTarSyr2,413 netTarSyr2,667 refSeqComposite,322 refSeqComposite,332 refSeqComposite,797 refSeqComposite,1296 refSeqComposite,1432 rmsk,235 simpleRepeat,33 transMapEnsemblV5,460 transMapEnsemblV5,469 transMapEnsemblV5,524 transMapEnsemblV5,585 transMapEstV5,429 transMapEstV5,438 transMapEstV5,493 transMapEstV5,554 transMapRefSeqV5,429 transMapRefSeqV5,438 transMapRefSeqV5,493 transMapRefSeqV5,554 transMapRnaV5,429 transMapRnaV5,438 transMapRnaV5,493 transMapRnaV5,554 transMapV5,12 transMapV5,535 transMapV5,544 transMapV5,599 transMapV5,660 uniprot,99 uniprot,130 uniprot,1160 thesis chainHg38,1025 chainMm10,1025 chainNetHg38,1028 chainNetMm10,1028 chainNetTarSyr2,1028 chainTarSyr2,1025 netHg38,1025 netMm10,1025 netTarSyr2,1025 they chainHg38,330 chainMm10,330 chainNetHg38,333 chainNetMm10,333 chainNetTarSyr2,333 chainTarSyr2,330 netHg38,330 netMm10,330 netTarSyr2,330 refSeqComposite,248 refSeqComposite,292 refSeqComposite,357 refSeqComposite,419 uniprot,179 thibaud-nissen refSeqComposite,1756 xenoRefGene,326 thick chainHg38,43 chainMm10,43 chainNetHg38,46 chainNetMm10,46 chainNetTarSyr2,46 chainTarSyr2,43 netHg38,43 netMm10,43 netTarSyr2,43 refSeqComposite,997 refSeqComposite,1013 thin refSeqComposite,995 refSeqComposite,1002 this HLTOGAannotvHg38v1,315 augustusGene,13 augustusGene,106 augustusGene,224 chainHg38,13 chainHg38,173 chainHg38,301 chainHg38,400 chainHg38,698 chainHg38,820 chainMm10,13 chainMm10,173 chainMm10,301 chainMm10,400 chainMm10,698 chainMm10,820 chainNetHg38,16 chainNetHg38,176 chainNetHg38,304 chainNetHg38,403 chainNetHg38,701 chainNetHg38,823 chainNetMm10,16 chainNetMm10,176 chainNetMm10,304 chainNetMm10,403 chainNetMm10,701 chainNetMm10,823 chainNetTarSyr2,16 chainNetTarSyr2,176 chainNetTarSyr2,304 chainNetTarSyr2,403 chainNetTarSyr2,701 chainNetTarSyr2,823 chainTarSyr2,13 chainTarSyr2,173 chainTarSyr2,301 chainTarSyr2,400 chainTarSyr2,698 chainTarSyr2,820 cpgIslandExt,72 cpgIslandExt,222 cpgIslandExt,585 cpgIslandExtUnmasked,75 cpgIslandExtUnmasked,225 cpgIslandExtUnmasked,588 cpgIslandSuper,72 cpgIslandSuper,222 cpgIslandSuper,585 ensGene,119 ensGene,135 gap,8 gap,37 gap,45 gap,75 gap,116 gc5BaseBw,38 gc5BaseBw,77 genscan,11 genscan,65 genscan,128 gold,9 gold,39 gold,44 gold,70 gold,140 microsat,11 microsat,50 microsat,99 mrna,31 mrna,61 mrna,88 mrna,324 mrna,352 nestedRepeats,15 nestedRepeats,79 nestedRepeats,321 netHg38,13 netHg38,173 netHg38,301 netHg38,400 netHg38,698 netHg38,820 netMm10,13 netMm10,173 netMm10,301 netMm10,400 netMm10,698 netMm10,820 netTarSyr2,13 netTarSyr2,173 netTarSyr2,301 netTarSyr2,400 netTarSyr2,698 netTarSyr2,820 refSeqComposite,58 refSeqComposite,145 refSeqComposite,501 refSeqComposite,565 refSeqComposite,726 refSeqComposite,816 refSeqComposite,855 refSeqComposite,1390 refSeqComposite,1438 refSeqComposite,1626 refSeqComposite,1712 rmsk,10 rmsk,51 rmsk,143 rmsk,344 simpleRepeat,12 simpleRepeat,31 transMapEnsemblV5,15 transMapEnsemblV5,96 transMapEnsemblV5,106 transMapEnsemblV5,134 transMapEnsemblV5,288 transMapEnsemblV5,677 transMapEstV5,13 transMapEstV5,65 transMapEstV5,75 transMapEstV5,103 transMapEstV5,257 transMapEstV5,646 transMapRefSeqV5,14 transMapRefSeqV5,65 transMapRefSeqV5,75 transMapRefSeqV5,103 transMapRefSeqV5,257 transMapRefSeqV5,646 transMapRnaV5,14 transMapRnaV5,65 transMapRnaV5,75 transMapRnaV5,103 transMapRnaV5,257 transMapRnaV5,646 transMapV5,171 transMapV5,181 transMapV5,209 transMapV5,363 transMapV5,752 ucscToINSDC,14 ucscToINSDC,46 ucscToRefSeq,9 ucscToRefSeq,40 uniprot,12 uniprot,134 uniprot,149 uniprot,218 uniprot,220 uniprot,653 uniprot,663 uniprot,871 uniprot,878 uniprot,1018 uniprot,1058 uniprot,1063 uniprot,1248 uniprot,1259 uniprot,1352 uniprot,1447 uniprot,1530 uniprot,1553 uniprot,1562 uniprot,1657 uniprot,1674 uniprot,1688 uniprot,1939 windowmaskerSdust,13 windowmaskerSdust,49 windowmaskerSdust,87 xenoMrna,12 xenoMrna,35 xenoMrna,65 xenoMrna,135 xenoMrna,162 xenoMrna,398 xenoMrna,426 xenoRefGene,12 xenoRefGene,38 xenoRefGene,47 xenoRefGene,85 xenoRefGene,140 xenoRefGene,179 xenoRefGene,215 xenoRefGene,281 those microsat,62 mrna,317 nestedRepeats,272 refSeqComposite,219 refSeqComposite,348 refSeqComposite,1239 uniprot,729 xenoMrna,391 xenoMrna,491 xenoRefGene,229 thousands chainHg38,254 chainMm10,254 chainNetHg38,257 chainNetMm10,257 chainNetTarSyr2,257 chainTarSyr2,254 netHg38,254 netMm10,254 netTarSyr2,254 three uniprot,1227 three-step uniprot,989 through gap,109 nestedRepeats,97 refSeqComposite,731 refSeqComposite,1325 refSeqComposite,1363 rmsk,309 transMapEnsemblV5,530 transMapEstV5,499 transMapRefSeqV5,499 transMapRnaV5,499 transMapV5,605 uniprot,98 uniprot,133 uniprot,633 uniprot,804 uniprot,1521 xenoRefGene,90 thus HLTOGAannotvHg38v1,279 time chainHg38,803 chainMm10,803 chainNetHg38,806 chainNetMm10,806 chainNetTarSyr2,806 chainTarSyr2,803 cpgIslandExt,99 cpgIslandExt,237 cpgIslandExtUnmasked,102 cpgIslandExtUnmasked,240 cpgIslandSuper,99 cpgIslandSuper,237 netHg38,803 netMm10,803 netTarSyr2,803 tissue mrna,153 mrna,188 mrna,203 xenoMrna,227 xenoMrna,262 xenoMrna,277 tissues mrna,196 xenoMrna,270 to HLTOGAannotvHg38v1,18 HLTOGAannotvHg38v1,90 HLTOGAannotvHg38v1,99 HLTOGAannotvHg38v1,106 HLTOGAannotvHg38v1,208 HLTOGAannotvHg38v1,255 HLTOGAannotvHg38v1,289 augustusGene,115 augustusGene,170 augustusGene,249 augustusGene,301 chainHg38,23 chainHg38,70 chainHg38,145 chainHg38,215 chainHg38,227 chainHg38,321 chainHg38,332 chainHg38,337 chainHg38,349 chainHg38,355 chainHg38,378 chainHg38,459 chainHg38,473 chainHg38,557 chainHg38,660 chainHg38,796 chainHg38,808 chainHg38,848 chainHg38,871 chainHg38,881 chainMm10,23 chainMm10,70 chainMm10,145 chainMm10,215 chainMm10,227 chainMm10,321 chainMm10,332 chainMm10,337 chainMm10,349 chainMm10,355 chainMm10,378 chainMm10,459 chainMm10,473 chainMm10,557 chainMm10,660 chainMm10,796 chainMm10,808 chainMm10,848 chainMm10,871 chainMm10,881 chainNetHg38,26 chainNetHg38,73 chainNetHg38,148 chainNetHg38,218 chainNetHg38,230 chainNetHg38,324 chainNetHg38,335 chainNetHg38,340 chainNetHg38,352 chainNetHg38,358 chainNetHg38,381 chainNetHg38,462 chainNetHg38,476 chainNetHg38,560 chainNetHg38,663 chainNetHg38,799 chainNetHg38,811 chainNetHg38,851 chainNetHg38,874 chainNetHg38,884 chainNetMm10,26 chainNetMm10,73 chainNetMm10,148 chainNetMm10,218 chainNetMm10,230 chainNetMm10,324 chainNetMm10,335 chainNetMm10,340 chainNetMm10,352 chainNetMm10,358 chainNetMm10,381 chainNetMm10,462 chainNetMm10,476 chainNetMm10,560 chainNetMm10,663 chainNetMm10,799 chainNetMm10,811 chainNetMm10,851 chainNetMm10,874 chainNetMm10,884 chainNetTarSyr2,26 chainNetTarSyr2,73 chainNetTarSyr2,148 chainNetTarSyr2,218 chainNetTarSyr2,230 chainNetTarSyr2,324 chainNetTarSyr2,335 chainNetTarSyr2,340 chainNetTarSyr2,352 chainNetTarSyr2,358 chainNetTarSyr2,381 chainNetTarSyr2,462 chainNetTarSyr2,476 chainNetTarSyr2,560 chainNetTarSyr2,663 chainNetTarSyr2,799 chainNetTarSyr2,811 chainNetTarSyr2,851 chainNetTarSyr2,874 chainNetTarSyr2,884 chainTarSyr2,23 chainTarSyr2,70 chainTarSyr2,145 chainTarSyr2,215 chainTarSyr2,227 chainTarSyr2,321 chainTarSyr2,332 chainTarSyr2,337 chainTarSyr2,349 chainTarSyr2,355 chainTarSyr2,378 chainTarSyr2,459 chainTarSyr2,473 chainTarSyr2,557 chainTarSyr2,660 chainTarSyr2,796 chainTarSyr2,808 chainTarSyr2,848 chainTarSyr2,871 chainTarSyr2,881 cpgIslandExt,69 cpgIslandExt,103 cpgIslandExt,124 cpgIslandExt,139 cpgIslandExt,205 cpgIslandExt,283 cpgIslandExt,358 cpgIslandExt,365 cpgIslandExt,371 cpgIslandExtUnmasked,72 cpgIslandExtUnmasked,106 cpgIslandExtUnmasked,127 cpgIslandExtUnmasked,142 cpgIslandExtUnmasked,208 cpgIslandExtUnmasked,286 cpgIslandExtUnmasked,361 cpgIslandExtUnmasked,368 cpgIslandExtUnmasked,374 cpgIslandSuper,69 cpgIslandSuper,103 cpgIslandSuper,124 cpgIslandSuper,139 cpgIslandSuper,205 cpgIslandSuper,283 cpgIslandSuper,358 cpgIslandSuper,365 cpgIslandSuper,371 ensGene,43 ensGene,149 gc5BaseBw,48 genscan,95 genscan,105 genscan,114 genscan,145 genscan,171 gold,132 microsat,18 microsat,38 microsat,121 mrna,70 mrna,107 mrna,111 mrna,126 mrna,133 mrna,137 mrna,155 mrna,175 mrna,182 mrna,281 mrna,330 mrna,340 mrna,355 mrna,378 mrna,454 nestedRepeats,148 nestedRepeats,152 nestedRepeats,174 nestedRepeats,184 nestedRepeats,200 nestedRepeats,225 nestedRepeats,234 nestedRepeats,260 nestedRepeats,304 nestedRepeats,319 netHg38,23 netHg38,70 netHg38,145 netHg38,215 netHg38,227 netHg38,321 netHg38,332 netHg38,337 netHg38,349 netHg38,355 netHg38,378 netHg38,459 netHg38,473 netHg38,557 netHg38,660 netHg38,796 netHg38,808 netHg38,848 netHg38,871 netHg38,881 netMm10,23 netMm10,70 netMm10,145 netMm10,215 netMm10,227 netMm10,321 netMm10,332 netMm10,337 netMm10,349 netMm10,355 netMm10,378 netMm10,459 netMm10,473 netMm10,557 netMm10,660 netMm10,796 netMm10,808 netMm10,848 netMm10,871 netMm10,881 netTarSyr2,23 netTarSyr2,70 netTarSyr2,145 netTarSyr2,215 netTarSyr2,227 netTarSyr2,321 netTarSyr2,332 netTarSyr2,337 netTarSyr2,349 netTarSyr2,355 netTarSyr2,378 netTarSyr2,459 netTarSyr2,473 netTarSyr2,557 netTarSyr2,660 netTarSyr2,796 netTarSyr2,808 netTarSyr2,848 netTarSyr2,871 netTarSyr2,881 refSeqComposite,55 refSeqComposite,115 refSeqComposite,156 refSeqComposite,168 refSeqComposite,174 refSeqComposite,306 refSeqComposite,309 refSeqComposite,324 refSeqComposite,368 refSeqComposite,440 refSeqComposite,496 refSeqComposite,679 refSeqComposite,704 refSeqComposite,743 refSeqComposite,756 refSeqComposite,778 refSeqComposite,827 refSeqComposite,834 refSeqComposite,858 refSeqComposite,905 refSeqComposite,911 refSeqComposite,919 refSeqComposite,925 refSeqComposite,938 refSeqComposite,980 refSeqComposite,1029 refSeqComposite,1062 refSeqComposite,1098 refSeqComposite,1109 refSeqComposite,1175 refSeqComposite,1442 refSeqComposite,1536 refSeqComposite,1589 refSeqComposite,1688 rmsk,147 rmsk,315 rmsk,327 rmsk,342 simpleRepeat,81 transMapEnsemblV5,112 transMapEnsemblV5,122 transMapEnsemblV5,178 transMapEnsemblV5,201 transMapEnsemblV5,260 transMapEnsemblV5,293 transMapEnsemblV5,301 transMapEnsemblV5,318 transMapEnsemblV5,332 transMapEnsemblV5,345 transMapEnsemblV5,384 transMapEnsemblV5,429 transMapEnsemblV5,439 transMapEnsemblV5,472 transMapEnsemblV5,478 transMapEnsemblV5,491 transMapEnsemblV5,651 transMapEnsemblV5,693 transMapEnsemblV5,772 transMapEstV5,81 transMapEstV5,91 transMapEstV5,147 transMapEstV5,170 transMapEstV5,229 transMapEstV5,262 transMapEstV5,270 transMapEstV5,287 transMapEstV5,301 transMapEstV5,314 transMapEstV5,353 transMapEstV5,398 transMapEstV5,408 transMapEstV5,441 transMapEstV5,447 transMapEstV5,460 transMapEstV5,620 transMapEstV5,662 transMapEstV5,741 transMapRefSeqV5,81 transMapRefSeqV5,91 transMapRefSeqV5,147 transMapRefSeqV5,170 transMapRefSeqV5,229 transMapRefSeqV5,262 transMapRefSeqV5,270 transMapRefSeqV5,287 transMapRefSeqV5,301 transMapRefSeqV5,314 transMapRefSeqV5,353 transMapRefSeqV5,398 transMapRefSeqV5,408 transMapRefSeqV5,441 transMapRefSeqV5,447 transMapRefSeqV5,460 transMapRefSeqV5,620 transMapRefSeqV5,662 transMapRefSeqV5,741 transMapRnaV5,81 transMapRnaV5,91 transMapRnaV5,147 transMapRnaV5,170 transMapRnaV5,229 transMapRnaV5,262 transMapRnaV5,270 transMapRnaV5,287 transMapRnaV5,301 transMapRnaV5,314 transMapRnaV5,353 transMapRnaV5,398 transMapRnaV5,408 transMapRnaV5,441 transMapRnaV5,447 transMapRnaV5,460 transMapRnaV5,620 transMapRnaV5,662 transMapRnaV5,741 transMapV5,80 transMapV5,90 transMapV5,121 transMapV5,132 transMapV5,155 transMapV5,187 transMapV5,197 transMapV5,253 transMapV5,276 transMapV5,335 transMapV5,368 transMapV5,376 transMapV5,393 transMapV5,407 transMapV5,420 transMapV5,459 transMapV5,504 transMapV5,514 transMapV5,547 transMapV5,553 transMapV5,566 transMapV5,726 transMapV5,768 transMapV5,847 ucscToINSDC,22 ucscToRefSeq,17 unipAliSwissprot,8 unipAliTrembl,8 uniprot,27 uniprot,86 uniprot,101 uniprot,118 uniprot,201 uniprot,214 uniprot,226 uniprot,245 uniprot,492 uniprot,525 uniprot,552 uniprot,559 uniprot,658 uniprot,682 uniprot,764 uniprot,784 uniprot,801 uniprot,849 uniprot,917 uniprot,920 uniprot,955 uniprot,974 uniprot,1008 uniprot,1088 uniprot,1196 uniprot,1215 uniprot,1220 uniprot,1247 uniprot,1285 uniprot,1336 uniprot,1356 uniprot,1369 uniprot,1405 uniprot,1413 uniprot,1460 uniprot,1473 uniprot,1478 uniprot,1493 uniprot,1518 uniprot,1551 uniprot,1676 uniprot,1761 uniprot,1802 uniprot,1828 uniprot,1846 uniprot,1851 uniprot,1856 uniprot,1884 uniprot,1890 uniprot,1975 windowmaskerSdust,47 xenoMrna,89 xenoMrna,144 xenoMrna,181 xenoMrna,185 xenoMrna,200 xenoMrna,207 xenoMrna,211 xenoMrna,229 xenoMrna,249 xenoMrna,256 xenoMrna,355 xenoMrna,404 xenoMrna,414 xenoMrna,429 xenoMrna,452 xenoMrna,528 xenoRefGene,115 xenoRefGene,151 xenoRefGene,158 xenoRefGene,182 xenoRefGene,208 toga HLTOGAannotvHg38v1,1 HLTOGAannotvHg38v1,4 HLTOGAannotvHg38v1,16 HLTOGAannotvHg38v1,44 HLTOGAannotvHg38v1,72 HLTOGAannotvHg38v1,326 HLTOGAannotvHg38v1,333 together chainHg38,125 chainMm10,125 chainNetHg38,128 chainNetMm10,128 chainNetTarSyr2,128 chainTarSyr2,125 netHg38,125 netMm10,125 netTarSyr2,125 tolerate chainHg38,93 chainMm10,93 chainNetHg38,96 chainNetMm10,96 chainNetTarSyr2,96 chainTarSyr2,93 netHg38,93 netMm10,93 netTarSyr2,93 tolerated uniprot,1257 too refSeqComposite,936 tool HLTOGAannotvHg38v1,17 mrna,524 refSeqComposite,1509 refSeqComposite,1738 transMapEnsemblV5,615 transMapEnsemblV5,646 transMapEstV5,584 transMapEstV5,615 transMapRefSeqV5,584 transMapRefSeqV5,615 transMapRnaV5,584 transMapRnaV5,615 transMapV5,690 transMapV5,721 uniprot,1766 uniprot,1797 windowmaskerSdust,24 xenoMrna,598 xenoRefGene,308 toolkit windowmaskerSdust,31 windowmaskerSdust,38 tools nestedRepeats,314 rmsk,337 uniprot,1873 top chainHg38,514 chainMm10,514 chainNetHg38,517 chainNetMm10,517 chainNetTarSyr2,517 chainTarSyr2,514 cpgIslandExt,220 cpgIslandExtUnmasked,223 cpgIslandSuper,220 netHg38,514 netMm10,514 netTarSyr2,514 refSeqComposite,737 uniprot,1304 uniprot,1340 uniprot,1489 xenoRefGene,95 top-level chainHg38,389 chainHg38,409 chainMm10,389 chainMm10,409 chainNetHg38,392 chainNetHg38,412 chainNetMm10,392 chainNetMm10,412 chainNetTarSyr2,392 chainNetTarSyr2,412 chainTarSyr2,389 chainTarSyr2,409 netHg38,389 netHg38,409 netMm10,389 netMm10,409 netTarSyr2,389 netTarSyr2,409 top-scoring uniprot,792 topological uniprot,330 track augustusGene,14 augustusGene,107 chainHg38,14 chainHg38,58 chainHg38,61 chainHg38,121 chainHg38,263 chainHg38,266 chainHg38,316 chainHg38,351 chainHg38,383 chainHg38,570 chainHg38,699 chainHg38,762 chainMm10,14 chainMm10,58 chainMm10,61 chainMm10,121 chainMm10,263 chainMm10,266 chainMm10,316 chainMm10,351 chainMm10,383 chainMm10,570 chainMm10,699 chainMm10,762 chainNetHg38,17 chainNetHg38,61 chainNetHg38,64 chainNetHg38,124 chainNetHg38,266 chainNetHg38,269 chainNetHg38,319 chainNetHg38,354 chainNetHg38,386 chainNetHg38,573 chainNetHg38,702 chainNetHg38,765 chainNetMm10,17 chainNetMm10,61 chainNetMm10,64 chainNetMm10,124 chainNetMm10,266 chainNetMm10,269 chainNetMm10,319 chainNetMm10,354 chainNetMm10,386 chainNetMm10,573 chainNetMm10,702 chainNetMm10,765 chainNetTarSyr2,17 chainNetTarSyr2,61 chainNetTarSyr2,64 chainNetTarSyr2,124 chainNetTarSyr2,266 chainNetTarSyr2,269 chainNetTarSyr2,319 chainNetTarSyr2,354 chainNetTarSyr2,386 chainNetTarSyr2,573 chainNetTarSyr2,702 chainNetTarSyr2,765 chainTarSyr2,14 chainTarSyr2,58 chainTarSyr2,61 chainTarSyr2,121 chainTarSyr2,263 chainTarSyr2,266 chainTarSyr2,316 chainTarSyr2,351 chainTarSyr2,383 chainTarSyr2,570 chainTarSyr2,699 chainTarSyr2,762 cpgIslandExt,173 cpgIslandExt,202 cpgIslandExt,216 cpgIslandExt,314 cpgIslandExt,318 cpgIslandExt,402 cpgIslandExt,492 cpgIslandExt,586 cpgIslandExtUnmasked,176 cpgIslandExtUnmasked,205 cpgIslandExtUnmasked,219 cpgIslandExtUnmasked,317 cpgIslandExtUnmasked,321 cpgIslandExtUnmasked,405 cpgIslandExtUnmasked,495 cpgIslandExtUnmasked,589 cpgIslandSuper,173 cpgIslandSuper,202 cpgIslandSuper,216 cpgIslandSuper,314 cpgIslandSuper,318 cpgIslandSuper,402 cpgIslandSuper,492 cpgIslandSuper,586 ensGene,136 gap,9 gap,76 gc5BaseBw,15 gc5BaseBw,39 genscan,12 genscan,66 genscan,76 genscan,87 gold,10 gold,71 gold,141 microsat,12 microsat,51 microsat,59 microsat,87 mrna,15 mrna,32 mrna,62 mrna,87 mrna,99 mrna,325 mrna,444 nestedRepeats,16 nestedRepeats,78 nestedRepeats,80 nestedRepeats,322 netHg38,14 netHg38,58 netHg38,61 netHg38,121 netHg38,263 netHg38,266 netHg38,316 netHg38,351 netHg38,383 netHg38,570 netHg38,699 netHg38,762 netMm10,14 netMm10,58 netMm10,61 netMm10,121 netMm10,263 netMm10,266 netMm10,316 netMm10,351 netMm10,383 netMm10,570 netMm10,699 netMm10,762 netTarSyr2,14 netTarSyr2,58 netTarSyr2,61 netTarSyr2,121 netTarSyr2,263 netTarSyr2,266 netTarSyr2,316 netTarSyr2,351 netTarSyr2,383 netTarSyr2,570 netTarSyr2,699 netTarSyr2,762 refSeqComposite,17 refSeqComposite,46 refSeqComposite,146 refSeqComposite,150 refSeqComposite,312 refSeqComposite,316 refSeqComposite,329 refSeqComposite,336 refSeqComposite,473 refSeqComposite,502 refSeqComposite,512 refSeqComposite,566 refSeqComposite,727 refSeqComposite,740 refSeqComposite,758 refSeqComposite,817 refSeqComposite,846 refSeqComposite,871 refSeqComposite,1201 refSeqComposite,1216 refSeqComposite,1341 refSeqComposite,1713 rmsk,11 rmsk,52 rmsk,144 rmsk,345 simpleRepeat,13 transMapEnsemblV5,16 transMapEnsemblV5,97 transMapEnsemblV5,107 transMapEnsemblV5,233 transMapEnsemblV5,572 transMapEnsemblV5,576 transMapEnsemblV5,678 transMapEstV5,14 transMapEstV5,66 transMapEstV5,76 transMapEstV5,202 transMapEstV5,541 transMapEstV5,545 transMapEstV5,647 transMapRefSeqV5,15 transMapRefSeqV5,66 transMapRefSeqV5,76 transMapRefSeqV5,202 transMapRefSeqV5,541 transMapRefSeqV5,545 transMapRefSeqV5,647 transMapRnaV5,15 transMapRnaV5,66 transMapRnaV5,76 transMapRnaV5,202 transMapRnaV5,541 transMapRnaV5,545 transMapRnaV5,647 transMapV5,102 transMapV5,172 transMapV5,182 transMapV5,308 transMapV5,647 transMapV5,651 transMapV5,753 ucscToINSDC,15 ucscToINSDC,47 ucscToRefSeq,10 ucscToRefSeq,41 uniprot,13 uniprot,104 uniprot,150 uniprot,219 uniprot,221 uniprot,234 uniprot,422 uniprot,429 uniprot,576 uniprot,654 uniprot,710 uniprot,1004 uniprot,1208 uniprot,1277 uniprot,1554 uniprot,1563 uniprot,1583 uniprot,1658 uniprot,1671 uniprot,1689 uniprot,1713 uniprot,1754 uniprot,1940 windowmaskerSdust,14 windowmaskerSdust,50 windowmaskerSdust,88 xenoMrna,13 xenoMrna,36 xenoMrna,66 xenoMrna,136 xenoMrna,161 xenoMrna,173 xenoMrna,399 xenoMrna,518 xenoRefGene,13 xenoRefGene,39 xenoRefGene,48 xenoRefGene,86 xenoRefGene,98 xenoRefGene,141 xenoRefGene,170 xenoRefGene,282 tracks augustusGene,41 chainHg38,776 chainMm10,776 chainNetHg38,779 chainNetMm10,779 chainNetTarSyr2,779 chainTarSyr2,776 ensGene,24 genscan,56 genscan,74 mrna,40 mrna,363 netHg38,776 netMm10,776 netTarSyr2,776 refSeqComposite,100 refSeqComposite,136 refSeqComposite,170 refSeqComposite,405 refSeqComposite,456 refSeqComposite,597 refSeqComposite,605 refSeqComposite,1141 refSeqComposite,1151 refSeqComposite,1227 refSeqComposite,1297 refSeqComposite,1376 refSeqComposite,1477 refSeqComposite,1584 refSeqComposite,1677 refSeqComposite,1702 transMapEnsemblV5,105 transMapEnsemblV5,525 transMapEnsemblV5,586 transMapEstV5,74 transMapEstV5,494 transMapEstV5,555 transMapRefSeqV5,74 transMapRefSeqV5,494 transMapRefSeqV5,555 transMapRnaV5,74 transMapRnaV5,494 transMapRnaV5,555 transMapV5,13 transMapV5,180 transMapV5,600 transMapV5,661 uniprot,91 uniprot,123 uniprot,206 uniprot,409 uniprot,1643 xenoMrna,44 xenoMrna,437 xenoRefGene,56 traditional chainHg38,85 chainMm10,85 chainNetHg38,88 chainNetMm10,88 chainNetTarSyr2,88 chainTarSyr2,85 netHg38,85 netMm10,85 netTarSyr2,85 trained augustusGene,150 training augustusGene,162 augustusGene,176 augustusGene,180 augustusGene,199 augustusGene,228 augustusGene,243 augustusGene,259 augustusGene,273 transcribed refSeqComposite,431 transcript HLTOGAannotvHg38v1,118 HLTOGAannotvHg38v1,134 HLTOGAannotvHg38v1,258 HLTOGAannotvHg38v1,286 HLTOGAannotvHg38v1,297 refSeqComposite,536 refSeqComposite,886 refSeqComposite,914 refSeqComposite,922 refSeqComposite,993 refSeqComposite,1036 refSeqComposite,1057 refSeqComposite,1122 refSeqComposite,1132 transMapEnsemblV5,154 transMapEnsemblV5,326 transMapEnsemblV5,380 transMapEstV5,123 transMapEstV5,295 transMapEstV5,349 transMapRefSeqV5,123 transMapRefSeqV5,295 transMapRefSeqV5,349 transMapRnaV5,123 transMapRnaV5,295 transMapRnaV5,349 transMapV5,229 transMapV5,401 transMapV5,455 uniprot,837 uniprot,908 uniprot,918 uniprot,945 uniprot,963 uniprot,1003 uniprot,1076 uniprot,1223 uniprot,1237 uniprot,1249 uniprot,1263 uniprot,1268 uniprot,1291 uniprot,1325 uniprot,1596 uniprot,1610 uniprot,1623 transcript-genome uniprot,813 uniprot,1619 transcript-to-genome uniprot,806 transcription cpgIslandExt,32 cpgIslandExtUnmasked,35 cpgIslandSuper,32 transcriptional genscan,28 transcripts HLTOGAannotvHg38v1,159 HLTOGAannotvHg38v1,188 HLTOGAannotvHg38v1,262 augustusGene,124 ncbiRefSeqGenomicDiff,7 refSeqComposite,256 refSeqComposite,323 refSeqComposite,472 refSeqComposite,524 refSeqComposite,557 refSeqComposite,1809 transMapEnsemblV5,344 transMapEstV5,313 transMapRefSeqV5,313 transMapRnaV5,313 transMapV5,419 uniprot,786 uniprot,833 uniprot,928 uniprot,936 uniprot,957 uniprot,985 uniprot,992 uniprot,1011 uniprot,1022 uniprot,1032 uniprot,1056 uniprot,1069 uniprot,1091 uniprot,1096 uniprot,1108 uniprot,1127 uniprot,1168 uniprot,1338 uniprot,1474 xenoRefGene,379 translated transMapV5,156 xenoMrna,15 xenoMrna,81 xenoMrna,101 xenoMrna,471 translation augustusGene,57 translational genscan,29 transmap transMapEnsemblV5,1 transMapEnsemblV5,3 transMapEnsemblV5,25 transMapEnsemblV5,443 transMapEnsemblV5,502 transMapEnsemblV5,591 transMapEnsemblV5,594 transMapEnsemblV5,597 transMapEnsemblV5,600 transMapEnsemblV5,666 transMapEstV5,1 transMapEstV5,3 transMapEstV5,23 transMapEstV5,412 transMapEstV5,471 transMapEstV5,560 transMapEstV5,563 transMapEstV5,566 transMapEstV5,569 transMapEstV5,635 transMapRefSeqV5,1 transMapRefSeqV5,3 transMapRefSeqV5,23 transMapRefSeqV5,412 transMapRefSeqV5,471 transMapRefSeqV5,560 transMapRefSeqV5,563 transMapRefSeqV5,566 transMapRefSeqV5,569 transMapRefSeqV5,635 transMapRnaV5,1 transMapRnaV5,3 transMapRnaV5,23 transMapRnaV5,412 transMapRnaV5,471 transMapRnaV5,560 transMapRnaV5,563 transMapRnaV5,566 transMapRnaV5,569 transMapRnaV5,635 transMapV5,1 transMapV5,3 transMapV5,22 transMapV5,71 transMapV5,101 transMapV5,158 transMapV5,518 transMapV5,577 transMapV5,666 transMapV5,669 transMapV5,672 transMapV5,675 transMapV5,741 transmembrane unipLocTransMemb,1 unipLocTransMemb,3 uniprot,265 uniprot,273 uniprot,515 uniprot,567 transposable nestedRepeats,379 rmsk,402 transposons chainHg38,571 chainHg38,596 chainHg38,906 chainMm10,571 chainMm10,596 chainMm10,906 chainNetHg38,574 chainNetHg38,599 chainNetHg38,909 chainNetMm10,574 chainNetMm10,599 chainNetMm10,909 chainNetTarSyr2,574 chainNetTarSyr2,599 chainNetTarSyr2,909 chainTarSyr2,571 chainTarSyr2,596 chainTarSyr2,906 netHg38,571 netHg38,596 netHg38,906 netMm10,571 netMm10,596 netMm10,906 netTarSyr2,571 netTarSyr2,596 netTarSyr2,906 trembl unipAliTrembl,1 unipAliTrembl,6 uniprot,4 uniprot,44 uniprot,79 uniprot,185 uniprot,192 uniprot,199 uniprot,211 uniprot,500 uniprot,604 uniprot,661 trends nestedRepeats,353 rmsk,376 trf simpleRepeat,7 simpleRepeat,26 simpleRepeat,61 simpleRepeat,67 tri-nucleotide microsat,5 microsat,34 tried uniprot,869 trimming chainHg38,804 chainMm10,804 chainNetHg38,807 chainNetMm10,807 chainNetTarSyr2,807 chainTarSyr2,804 netHg38,804 netMm10,804 netTarSyr2,804 trna rmsk,190 true augustusGene,132 windowmaskerSdust,60 windowmaskerSdust,69 ts cpgIslandExt,106 cpgIslandExtUnmasked,109 cpgIslandSuper,106 turn chainHg38,338 chainMm10,338 chainNetHg38,341 chainNetMm10,341 chainNetTarSyr2,341 chainTarSyr2,338 cpgIslandExt,104 cpgIslandExtUnmasked,107 cpgIslandSuper,104 netHg38,338 netMm10,338 netTarSyr2,338 refSeqComposite,809 xenoRefGene,133 turns uniprot,370 twice cpgIslandExt,354 cpgIslandExtUnmasked,357 cpgIslandSuper,354 two chainHg38,912 chainMm10,912 chainNetHg38,915 chainNetMm10,915 chainNetTarSyr2,915 chainTarSyr2,912 netHg38,912 netMm10,912 netTarSyr2,912 transMapEnsemblV5,455 transMapEnsemblV5,492 transMapEstV5,424 transMapEstV5,461 transMapRefSeqV5,424 transMapRefSeqV5,461 transMapRnaV5,424 transMapRnaV5,461 transMapV5,530 transMapV5,567 uniprot,71 uniprot,630 uniprot,1641 xenoMrna,69 xenoMrna,106 twobittofa cpgIslandExt,411 cpgIslandExt,497 cpgIslandExt,502 cpgIslandExtUnmasked,414 cpgIslandExtUnmasked,500 cpgIslandExtUnmasked,505 cpgIslandSuper,411 cpgIslandSuper,497 cpgIslandSuper,502 type gold,146 mrna,115 mrna,145 uniprot,65 uniprot,271 uniprot,464 uniprot,614 xenoMrna,189 xenoMrna,219 types augustusGene,89 chainHg38,510 chainMm10,510 chainNetHg38,513 chainNetMm10,513 chainNetTarSyr2,513 chainTarSyr2,510 gap,122 gold,137 mrna,194 mrna,366 netHg38,510 netMm10,510 netTarSyr2,510 refSeqComposite,875 refSeqComposite,890 transMapEnsemblV5,139 transMapEstV5,108 transMapRefSeqV5,108 transMapRnaV5,108 transMapV5,214 uniprot,676 xenoMrna,268 xenoMrna,440 typical cpgIslandExt,161 cpgIslandExtUnmasked,164 cpgIslandSuper,161 refSeqComposite,430 typically HLTOGAannotvHg38v1,273 cpgIslandExt,29 cpgIslandExtUnmasked,32 cpgIslandSuper,29 gc5BaseBw,33 u chainHg38,1075 chainMm10,1075 chainNetHg38,1078 chainNetMm10,1078 chainNetTarSyr2,1078 chainTarSyr2,1075 netHg38,1075 netMm10,1075 netTarSyr2,1075 ucsc mrna,448 nestedRepeats,245 refSeqComposite,44 refSeqComposite,48 refSeqComposite,71 refSeqComposite,193 refSeqComposite,334 refSeqComposite,480 refSeqComposite,486 refSeqComposite,595 refSeqComposite,1155 refSeqComposite,1205 refSeqComposite,1213 refSeqComposite,1418 refSeqComposite,1603 refSeqComposite,1717 transMapEnsemblV5,35 transMapEnsemblV5,163 transMapEnsemblV5,184 transMapEnsemblV5,685 transMapEstV5,33 transMapEstV5,132 transMapEstV5,153 transMapEstV5,654 transMapRefSeqV5,33 transMapRefSeqV5,132 transMapRefSeqV5,153 transMapRefSeqV5,654 transMapRnaV5,33 transMapRnaV5,132 transMapRnaV5,153 transMapRnaV5,654 transMapV5,32 transMapV5,238 transMapV5,259 transMapV5,760 ucscToINSDC,17 ucscToRefSeq,12 unipAliSwissprot,3 unipAliTrembl,3 uniprot,107 uniprot,190 uniprot,773 uniprot,826 uniprot,827 uniprot,844 uniprot,1206 uniprot,1275 uniprot,1668 uniprot,1947 xenoMrna,522 xenoRefGene,286 unambiguously refSeqComposite,1112 uncertain HLTOGAannotvHg38v1,235 uncheck refSeqComposite,164 undergone refSeqComposite,618 xenoRefGene,69 underlies genscan,142 underlying uniprot,1682 xenoRefGene,37 underneath chainHg38,840 chainMm10,840 chainNetHg38,843 chainNetMm10,843 chainNetTarSyr2,843 chainTarSyr2,840 netHg38,840 netMm10,840 netTarSyr2,840 unexpected uniprot,766 ungapped chainHg38,449 chainMm10,449 chainNetHg38,452 chainNetMm10,452 chainNetTarSyr2,452 chainTarSyr2,449 netHg38,449 netMm10,449 netTarSyr2,449 uniprot unipChain,2 unipConflict,3 unipDisulfBond,3 unipDomain,2 unipInterest,2 unipLocCytopl,2 unipLocExtra,2 unipLocSignal,3 unipLocTransMemb,2 unipModif,3 unipMut,2 unipOther,3 unipRepeat,2 unipStruct,2 uniprot,1 uniprot,2 uniprot,23 uniprot,30 uniprot,41 uniprot,43 uniprot,68 uniprot,152 uniprot,237 uniprot,253 uniprot,264 uniprot,275 uniprot,286 uniprot,296 uniprot,322 uniprot,332 uniprot,337 uniprot,349 uniprot,358 uniprot,371 uniprot,380 uniprot,382 uniprot,392 uniprot,413 uniprot,424 uniprot,453 uniprot,494 uniprot,529 uniprot,544 uniprot,573 uniprot,669 uniprot,714 uniprot,721 uniprot,738 uniprot,750 uniprot,779 uniprot,924 uniprot,996 uniprot,1016 uniprot,1029 uniprot,1231 uniprot,1437 uniprot,1503 uniprot,1509 uniprot,1513 uniprot,1591 uniprot,1669 uniprot,1702 uniprot,1817 uniprot,1845 uniprot,1910 uniprot,1964 uniprot,1976 uniprot,1985 uniprot,1996 uniprot-annotated uniprot,1279 unipstruct.bb uniprot,1818 uniptogenome.over.chain.gz uniprot,1896 uniprot,1912 uniprot,1934 uniptogenomelift.psl.gz uniprot,1899 unique transMapEnsemblV5,386 transMapEnsemblV5,397 transMapEnsemblV5,434 transMapEnsemblV5,445 transMapEstV5,355 transMapEstV5,366 transMapEstV5,403 transMapEstV5,414 transMapRefSeqV5,355 transMapRefSeqV5,366 transMapRefSeqV5,403 transMapRefSeqV5,414 transMapRnaV5,355 transMapRnaV5,366 transMapRnaV5,403 transMapRnaV5,414 transMapV5,461 transMapV5,472 transMapV5,509 transMapV5,520 uniprot,1600 universal uniprot,1993 university chainHg38,926 chainHg38,960 chainHg38,1006 chainHg38,1029 chainMm10,926 chainMm10,960 chainMm10,1006 chainMm10,1029 chainNetHg38,929 chainNetHg38,963 chainNetHg38,1009 chainNetHg38,1032 chainNetMm10,929 chainNetMm10,963 chainNetMm10,1009 chainNetMm10,1032 chainNetTarSyr2,929 chainNetTarSyr2,963 chainNetTarSyr2,1009 chainNetTarSyr2,1032 chainTarSyr2,926 chainTarSyr2,960 chainTarSyr2,1006 chainTarSyr2,1029 netHg38,926 netHg38,960 netHg38,1006 netHg38,1029 netMm10,926 netMm10,960 netMm10,1006 netMm10,1029 netTarSyr2,926 netTarSyr2,960 netTarSyr2,1006 netTarSyr2,1029 unknown rmsk,203 unless cpgIslandExt,119 cpgIslandExtUnmasked,122 cpgIslandSuper,119 nestedRepeats,206 unlikely HLTOGAannotvHg38v1,288 unmasked cpgIslandExt,169 cpgIslandExt,208 cpgIslandExt,315 cpgIslandExt,491 cpgIslandExtUnmasked,1 cpgIslandExtUnmasked,172 cpgIslandExtUnmasked,211 cpgIslandExtUnmasked,318 cpgIslandExtUnmasked,494 cpgIslandSuper,169 cpgIslandSuper,208 cpgIslandSuper,315 cpgIslandSuper,491 unprocessed chainHg38,230 chainMm10,230 chainNetHg38,233 chainNetMm10,233 chainNetTarSyr2,233 chainTarSyr2,230 netHg38,230 netMm10,230 netTarSyr2,230 unpublished cpgIslandExt,602 cpgIslandExtUnmasked,605 cpgIslandSuper,602 unsequenced chainHg38,187 chainMm10,187 chainNetHg38,190 chainNetMm10,190 chainNetTarSyr2,190 chainTarSyr2,187 netHg38,187 netMm10,187 netTarSyr2,187 unsure rmsk,263 untranscribed refSeqComposite,408 up gold,77 refSeqComposite,1444 refSeqComposite,1638 rmsk,146 update mrna,503 nestedRepeats,46 nestedRepeats,58 nestedRepeats,336 nestedRepeats,343 refSeqComposite,1774 rmsk,82 rmsk,94 rmsk,359 rmsk,366 xenoMrna,577 xenoRefGene,344 updated uniprot,1566 xenoRefGene,41 us uniprot,687 uniprot,1441 use gold,88 mrna,112 refSeqComposite,36 refSeqComposite,1546 uniprot,991 uniprot,1021 uniprot,1073 uniprot,1225 xenoMrna,186 used HLTOGAannotvHg38v1,105 augustusGene,146 augustusGene,174 augustusGene,183 augustusGene,231 augustusGene,246 chainHg38,299 chainHg38,673 chainHg38,704 chainHg38,795 chainHg38,847 chainHg38,880 chainMm10,299 chainMm10,673 chainMm10,704 chainMm10,795 chainMm10,847 chainMm10,880 chainNetHg38,302 chainNetHg38,676 chainNetHg38,707 chainNetHg38,798 chainNetHg38,850 chainNetHg38,883 chainNetMm10,302 chainNetMm10,676 chainNetMm10,707 chainNetMm10,798 chainNetMm10,850 chainNetMm10,883 chainNetTarSyr2,302 chainNetTarSyr2,676 chainNetTarSyr2,707 chainNetTarSyr2,798 chainNetTarSyr2,850 chainNetTarSyr2,883 chainTarSyr2,299 chainTarSyr2,673 chainTarSyr2,704 chainTarSyr2,795 chainTarSyr2,847 chainTarSyr2,880 cpgIslandExt,308 cpgIslandExtUnmasked,311 cpgIslandSuper,308 ensGene,36 genscan,159 gold,14 mrna,69 mrna,221 mrna,280 nestedRepeats,247 nestedRepeats,292 nestedRepeats,318 netHg38,299 netHg38,673 netHg38,704 netHg38,795 netHg38,847 netHg38,880 netMm10,299 netMm10,673 netMm10,704 netMm10,795 netMm10,847 netMm10,880 netTarSyr2,299 netTarSyr2,673 netTarSyr2,704 netTarSyr2,795 netTarSyr2,847 netTarSyr2,880 refSeqComposite,234 refSeqComposite,244 refSeqComposite,1000 rmsk,299 rmsk,341 transMapEnsemblV5,56 transMapEnsemblV5,64 transMapEnsemblV5,187 transMapEnsemblV5,240 transMapEnsemblV5,245 transMapEnsemblV5,265 transMapEnsemblV5,285 transMapEnsemblV5,317 transMapEnsemblV5,650 transMapEstV5,156 transMapEstV5,209 transMapEstV5,214 transMapEstV5,234 transMapEstV5,254 transMapEstV5,286 transMapEstV5,619 transMapRefSeqV5,156 transMapRefSeqV5,209 transMapRefSeqV5,214 transMapRefSeqV5,234 transMapRefSeqV5,254 transMapRefSeqV5,286 transMapRefSeqV5,619 transMapRnaV5,156 transMapRnaV5,209 transMapRnaV5,214 transMapRnaV5,234 transMapRnaV5,254 transMapRnaV5,286 transMapRnaV5,619 transMapV5,70 transMapV5,262 transMapV5,315 transMapV5,320 transMapV5,340 transMapV5,360 transMapV5,392 transMapV5,725 uniprot,1062 uniprot,1087 uniprot,1118 uniprot,1198 uniprot,1210 uniprot,1319 uniprot,1351 uniprot,1550 uniprot,1626 uniprot,1801 uniprot,1883 xenoMrna,143 xenoMrna,295 xenoMrna,354 useful chainHg38,284 chainHg38,483 chainMm10,284 chainMm10,483 chainNetHg38,287 chainNetHg38,486 chainNetMm10,287 chainNetMm10,486 chainNetTarSyr2,287 chainNetTarSyr2,486 chainTarSyr2,284 chainTarSyr2,483 microsat,20 netHg38,284 netHg38,483 netMm10,284 netMm10,483 netTarSyr2,284 netTarSyr2,483 user mrna,339 transMapEnsemblV5,121 transMapEstV5,90 transMapRefSeqV5,90 transMapRnaV5,90 transMapV5,196 xenoMrna,413 users refSeqComposite,826 uniprot,406 uniprot,684 xenoRefGene,150 uses HLTOGAannotvHg38v1,45 HLTOGAannotvHg38v1,87 rmsk,79 using HLTOGAannotvHg38v1,6 augustusGene,294 chainHg38,75 chainHg38,609 chainHg38,769 chainMm10,75 chainMm10,609 chainMm10,769 chainNetHg38,78 chainNetHg38,612 chainNetHg38,772 chainNetMm10,78 chainNetMm10,612 chainNetMm10,772 chainNetTarSyr2,78 chainNetTarSyr2,612 chainNetTarSyr2,772 chainTarSyr2,75 chainTarSyr2,609 chainTarSyr2,769 cpgIslandExt,516 cpgIslandExt,589 cpgIslandExtUnmasked,519 cpgIslandExtUnmasked,592 cpgIslandSuper,516 cpgIslandSuper,589 ensGene,64 microsat,90 mrna,396 nestedRepeats,43 nestedRepeats,104 nestedRepeats,283 netHg38,75 netHg38,609 netHg38,769 netMm10,75 netMm10,609 netMm10,769 netTarSyr2,75 netTarSyr2,609 netTarSyr2,769 refSeqComposite,79 refSeqComposite,1156 refSeqComposite,1206 refSeqComposite,1219 refSeqComposite,1237 refSeqComposite,1309 refSeqComposite,1507 refSeqComposite,1592 refSeqComposite,1623 rmsk,15 rmsk,290 transMapEnsemblV5,75 transMapEnsemblV5,564 transMapEnsemblV5,613 transMapEnsemblV5,765 transMapEstV5,44 transMapEstV5,533 transMapEstV5,582 transMapEstV5,734 transMapRefSeqV5,44 transMapRefSeqV5,533 transMapRefSeqV5,582 transMapRefSeqV5,734 transMapRnaV5,44 transMapRnaV5,533 transMapRnaV5,582 transMapRnaV5,734 transMapV5,43 transMapV5,82 transMapV5,125 transMapV5,136 transMapV5,143 transMapV5,639 transMapV5,688 transMapV5,840 uniprot,217 uniprot,722 uniprot,1526 xenoMrna,470 xenoRefGene,227 ustat windowmaskerSdust,66 usually nestedRepeats,192 transMapEnsemblV5,505 transMapEstV5,474 transMapRefSeqV5,474 transMapRnaV5,474 transMapV5,580 utilities refSeqComposite,1530 refSeqComposite,1599 utility refSeqComposite,1595 refSeqComposite,1607 utils cpgIslandExt,565 cpgIslandExtUnmasked,568 cpgIslandSuper,565 utr transMapV5,165 v HLTOGAannotvHg38v1,343 ensGene,185 v3.1 augustusGene,7 v4 transMapEnsemblV5,667 transMapEstV5,636 transMapRefSeqV5,636 transMapRnaV5,636 v5 transMapV5,2 transMapV5,742 valid mrna,160 xenoMrna,234 validate refSeqComposite,829 xenoRefGene,153 validation genscan,107 value mrna,231 xenoMrna,305 variant uniprot,2026 variants refSeqComposite,951 uniprot,357 uniprot,415 uniprot,425 uniprot,533 uniprot,943 uniprot,2042 variation microsat,7 nestedRepeats,11 refSeqComposite,1078 rmsk,6 simpleRepeat,8 uniprot,438 windowmaskerSdust,9 variety gc5BaseBw,45 various uniprot,50 vb chainHg38,1033 chainMm10,1033 chainNetHg38,1036 chainNetMm10,1036 chainNetTarSyr2,1036 chainTarSyr2,1033 netHg38,1033 netMm10,1033 netTarSyr2,1033 version augustusGene,23 augustusGene,263 cpgIslandExt,170 cpgIslandExt,193 cpgIslandExt,199 cpgIslandExt,209 cpgIslandExtUnmasked,173 cpgIslandExtUnmasked,196 cpgIslandExtUnmasked,202 cpgIslandExtUnmasked,212 cpgIslandSuper,170 cpgIslandSuper,193 cpgIslandSuper,199 cpgIslandSuper,209 refSeqComposite,1135 refSeqComposite,1570 rmsk,58 transMapEnsemblV5,8 transMapEstV5,6 transMapRefSeqV5,7 transMapRnaV5,7 transMapV5,5 uniprot,1254 uniprot,1297 uniprot,1576 uniprot,1593 versions augustusGene,279 ensGene,133 nestedRepeats,251 nestedRepeats,267 refSeqComposite,1342 refSeqComposite,1696 uniprot,1655 vertebrate cpgIslandExt,59 cpgIslandExt,611 cpgIslandExtUnmasked,62 cpgIslandExtUnmasked,614 cpgIslandSuper,59 cpgIslandSuper,611 transMapEnsemblV5,31 transMapEnsemblV5,159 transMapEnsemblV5,192 transMapEstV5,29 transMapEstV5,128 transMapEstV5,161 transMapRefSeqV5,29 transMapRefSeqV5,128 transMapRefSeqV5,161 transMapRnaV5,29 transMapRnaV5,128 transMapRnaV5,161 transMapV5,28 transMapV5,114 transMapV5,234 transMapV5,267 xenoMrna,19 vertebrates augustusGene,209 cpgIslandExt,25 cpgIslandExtUnmasked,28 cpgIslandSuper,25 very uniprot,977 uniprot,1185 uniprot,1399 uniprot,1402 via transMapEnsemblV5,328 transMapEstV5,297 transMapRefSeqV5,297 transMapRnaV5,297 transMapV5,403 uniprot,1293 view chainHg38,460 chainMm10,460 chainNetHg38,463 chainNetMm10,463 chainNetTarSyr2,463 chainTarSyr2,460 cpgIslandExt,206 cpgIslandExtUnmasked,209 cpgIslandSuper,206 mrna,156 netHg38,460 netMm10,460 netTarSyr2,460 xenoMrna,230 viewed gold,80 visibility cpgIslandExt,212 cpgIslandExtUnmasked,215 cpgIslandSuper,212 visible cpgIslandExt,188 cpgIslandExtUnmasked,191 cpgIslandSuper,188 uniprot,147 visit refSeqComposite,104 vs HLTOGAannotvHg38v1,2 w chainHg38,1035 chainHg38,1055 chainHg38,1103 chainMm10,1035 chainMm10,1055 chainMm10,1103 chainNetHg38,1038 chainNetHg38,1058 chainNetHg38,1106 chainNetMm10,1038 chainNetMm10,1058 chainNetMm10,1106 chainNetTarSyr2,1038 chainNetTarSyr2,1058 chainNetTarSyr2,1106 chainTarSyr2,1035 chainTarSyr2,1055 chainTarSyr2,1103 gold,149 netHg38,1035 netHg38,1055 netHg38,1103 netMm10,1035 netMm10,1055 netMm10,1103 netTarSyr2,1035 netTarSyr2,1055 netTarSyr2,1103 waack augustusGene,318 want uniprot,690 was HLTOGAannotvHg38v1,317 augustusGene,230 augustusGene,245 augustusGene,264 augustusGene,280 chainHg38,654 chainHg38,672 chainHg38,793 chainHg38,838 chainHg38,846 chainHg38,866 chainHg38,878 chainHg38,903 chainHg38,921 chainHg38,956 chainMm10,654 chainMm10,672 chainMm10,793 chainMm10,838 chainMm10,846 chainMm10,866 chainMm10,878 chainMm10,903 chainMm10,921 chainMm10,956 chainNetHg38,657 chainNetHg38,675 chainNetHg38,796 chainNetHg38,841 chainNetHg38,849 chainNetHg38,869 chainNetHg38,881 chainNetHg38,906 chainNetHg38,924 chainNetHg38,959 chainNetMm10,657 chainNetMm10,675 chainNetMm10,796 chainNetMm10,841 chainNetMm10,849 chainNetMm10,869 chainNetMm10,881 chainNetMm10,906 chainNetMm10,924 chainNetMm10,959 chainNetTarSyr2,657 chainNetTarSyr2,675 chainNetTarSyr2,796 chainNetTarSyr2,841 chainNetTarSyr2,849 chainNetTarSyr2,869 chainNetTarSyr2,881 chainNetTarSyr2,906 chainNetTarSyr2,924 chainNetTarSyr2,959 chainTarSyr2,654 chainTarSyr2,672 chainTarSyr2,793 chainTarSyr2,838 chainTarSyr2,846 chainTarSyr2,866 chainTarSyr2,878 chainTarSyr2,903 chainTarSyr2,921 chainTarSyr2,956 cpgIslandExt,255 cpgIslandExt,307 cpgIslandExt,587 cpgIslandExtUnmasked,258 cpgIslandExtUnmasked,310 cpgIslandExtUnmasked,590 cpgIslandSuper,255 cpgIslandSuper,307 cpgIslandSuper,587 microsat,108 mrna,415 mrna,445 netHg38,654 netHg38,672 netHg38,793 netHg38,838 netHg38,846 netHg38,866 netHg38,878 netHg38,903 netHg38,921 netHg38,956 netMm10,654 netMm10,672 netMm10,793 netMm10,838 netMm10,846 netMm10,866 netMm10,878 netMm10,903 netMm10,921 netMm10,956 netTarSyr2,654 netTarSyr2,672 netTarSyr2,793 netTarSyr2,838 netTarSyr2,846 netTarSyr2,866 netTarSyr2,878 netTarSyr2,903 netTarSyr2,921 netTarSyr2,956 refSeqComposite,503 refSeqComposite,1264 refSeqComposite,1714 rmsk,12 rmsk,262 simpleRepeat,68 transMapEnsemblV5,222 transMapEnsemblV5,239 transMapEnsemblV5,284 transMapEnsemblV5,316 transMapEnsemblV5,679 transMapEstV5,191 transMapEstV5,208 transMapEstV5,253 transMapEstV5,285 transMapEstV5,648 transMapRefSeqV5,191 transMapRefSeqV5,208 transMapRefSeqV5,253 transMapRefSeqV5,285 transMapRefSeqV5,648 transMapRnaV5,191 transMapRnaV5,208 transMapRnaV5,253 transMapRnaV5,285 transMapRnaV5,648 transMapV5,297 transMapV5,314 transMapV5,359 transMapV5,391 transMapV5,754 ucscToINSDC,48 ucscToRefSeq,42 uniprot,799 uniprot,815 uniprot,1354 uniprot,1625 uniprot,1941 windowmaskerSdust,52 windowmaskerSdust,78 xenoMrna,488 xenoMrna,519 xenoRefGene,254 xenoRefGene,283 way transMapEnsemblV5,590 transMapEstV5,559 transMapRefSeqV5,559 transMapRnaV5,559 transMapV5,665 uniprot,1459 ways gc5BaseBw,47 refSeqComposite,1303 we ensGene,146 refSeqComposite,77 rmsk,122 uniprot,1224 uniprot,1453 uniprot,1859 weaker HLTOGAannotvHg38v1,198 webb chainHg38,935 chainHg38,972 chainMm10,935 chainMm10,972 chainNetHg38,938 chainNetHg38,975 chainNetMm10,938 chainNetMm10,975 chainNetTarSyr2,938 chainNetTarSyr2,975 chainTarSyr2,935 chainTarSyr2,972 netHg38,935 netHg38,972 netMm10,935 netMm10,972 netTarSyr2,935 netTarSyr2,972 weekly xenoRefGene,42 well augustusGene,78 cpgIslandExt,549 cpgIslandExtUnmasked,552 cpgIslandSuper,549 genscan,36 rmsk,54 were augustusGene,50 augustusGene,66 augustusGene,125 augustusGene,149 augustusGene,182 chainHg38,582 chainHg38,590 chainHg38,597 chainHg38,604 chainHg38,616 chainHg38,690 chainHg38,764 chainHg38,944 chainHg38,988 chainHg38,1002 chainMm10,582 chainMm10,590 chainMm10,597 chainMm10,604 chainMm10,616 chainMm10,690 chainMm10,764 chainMm10,944 chainMm10,988 chainMm10,1002 chainNetHg38,585 chainNetHg38,593 chainNetHg38,600 chainNetHg38,607 chainNetHg38,619 chainNetHg38,693 chainNetHg38,767 chainNetHg38,947 chainNetHg38,991 chainNetHg38,1005 chainNetMm10,585 chainNetMm10,593 chainNetMm10,600 chainNetMm10,607 chainNetMm10,619 chainNetMm10,693 chainNetMm10,767 chainNetMm10,947 chainNetMm10,991 chainNetMm10,1005 chainNetTarSyr2,585 chainNetTarSyr2,593 chainNetTarSyr2,600 chainNetTarSyr2,607 chainNetTarSyr2,619 chainNetTarSyr2,693 chainNetTarSyr2,767 chainNetTarSyr2,947 chainNetTarSyr2,991 chainNetTarSyr2,1005 chainTarSyr2,582 chainTarSyr2,590 chainTarSyr2,597 chainTarSyr2,604 chainTarSyr2,616 chainTarSyr2,690 chainTarSyr2,764 chainTarSyr2,944 chainTarSyr2,988 chainTarSyr2,1002 cpgIslandExt,227 cpgIslandExtUnmasked,230 cpgIslandSuper,227 ensGene,13 gc5BaseBw,79 mrna,391 mrna,439 netHg38,582 netHg38,590 netHg38,597 netHg38,604 netHg38,616 netHg38,690 netHg38,764 netHg38,944 netHg38,988 netHg38,1002 netMm10,582 netMm10,590 netMm10,597 netMm10,604 netMm10,616 netMm10,690 netMm10,764 netMm10,944 netMm10,988 netMm10,1002 netTarSyr2,582 netTarSyr2,590 netTarSyr2,597 netTarSyr2,604 netTarSyr2,616 netTarSyr2,690 netTarSyr2,764 netTarSyr2,944 netTarSyr2,988 netTarSyr2,1002 refSeqComposite,101 refSeqComposite,249 refSeqComposite,358 refSeqComposite,420 refSeqComposite,1152 refSeqComposite,1165 refSeqComposite,1230 refSeqComposite,1247 refSeqComposite,1288 transMapEnsemblV5,156 transMapEnsemblV5,186 transMapEnsemblV5,213 transMapEnsemblV5,244 transMapEnsemblV5,250 transMapEnsemblV5,264 transMapEnsemblV5,351 transMapEnsemblV5,382 transMapEnsemblV5,395 transMapEstV5,125 transMapEstV5,155 transMapEstV5,182 transMapEstV5,213 transMapEstV5,219 transMapEstV5,233 transMapEstV5,320 transMapEstV5,351 transMapEstV5,364 transMapRefSeqV5,125 transMapRefSeqV5,155 transMapRefSeqV5,182 transMapRefSeqV5,213 transMapRefSeqV5,219 transMapRefSeqV5,233 transMapRefSeqV5,320 transMapRefSeqV5,351 transMapRefSeqV5,364 transMapRnaV5,125 transMapRnaV5,155 transMapRnaV5,182 transMapRnaV5,213 transMapRnaV5,219 transMapRnaV5,233 transMapRnaV5,320 transMapRnaV5,351 transMapRnaV5,364 transMapV5,116 transMapV5,129 transMapV5,231 transMapV5,261 transMapV5,288 transMapV5,319 transMapV5,325 transMapV5,339 transMapV5,426 transMapV5,457 transMapV5,470 ucscToINSDC,35 ucscToRefSeq,29 uniprot,782 uniprot,794 uniprot,930 uniprot,937 uniprot,1386 uniprot,1471 uniprot,1505 uniprot,1515 xenoMrna,463 xenoMrna,513 xenoRefGene,220 xenoRefGene,237 xenoRefGene,278 wget uniprot,1903 uniprot,1913 wheeler mrna,500 xenoMrna,574 when augustusGene,188 augustusGene,238 chainHg38,411 chainMm10,411 chainNetHg38,414 chainNetMm10,414 chainNetTarSyr2,414 chainTarSyr2,411 mrna,92 mrna,102 mrna,400 netHg38,411 netMm10,411 netTarSyr2,411 refSeqComposite,1092 refSeqComposite,1249 transMapEnsemblV5,468 transMapEstV5,437 transMapRefSeqV5,437 transMapRnaV5,437 transMapV5,543 uniprot,951 uniprot,1202 uniprot,1632 xenoMrna,166 xenoMrna,176 xenoMrna,473 xenoRefGene,239 where chainHg38,194 chainMm10,194 chainNetHg38,197 chainNetMm10,197 chainNetTarSyr2,197 chainTarSyr2,194 cpgIslandExt,151 cpgIslandExt,393 cpgIslandExtUnmasked,154 cpgIslandExtUnmasked,396 cpgIslandSuper,151 cpgIslandSuper,393 gold,95 netHg38,194 netMm10,194 netTarSyr2,194 transMapEnsemblV5,272 transMapEnsemblV5,374 transMapEnsemblV5,423 transMapEnsemblV5,511 transMapEstV5,241 transMapEstV5,343 transMapEstV5,392 transMapEstV5,480 transMapRefSeqV5,241 transMapRefSeqV5,343 transMapRefSeqV5,392 transMapRefSeqV5,480 transMapRnaV5,241 transMapRnaV5,343 transMapRnaV5,392 transMapRnaV5,480 transMapV5,347 transMapV5,449 transMapV5,498 transMapV5,586 uniprot,1192 whether chainHg38,862 chainMm10,862 chainNetHg38,865 chainNetMm10,865 chainNetTarSyr2,865 chainTarSyr2,862 netHg38,862 netMm10,862 netTarSyr2,862 which augustusGene,159 augustusGene,227 chainHg38,328 chainHg38,620 chainHg38,827 chainMm10,328 chainMm10,620 chainMm10,827 chainNetHg38,331 chainNetHg38,623 chainNetHg38,830 chainNetMm10,331 chainNetMm10,623 chainNetMm10,830 chainNetTarSyr2,331 chainNetTarSyr2,623 chainNetTarSyr2,830 chainTarSyr2,328 chainTarSyr2,620 chainTarSyr2,827 cpgIslandExt,85 cpgIslandExtUnmasked,88 cpgIslandSuper,85 mrna,179 nestedRepeats,31 nestedRepeats,87 netHg38,328 netHg38,620 netHg38,827 netMm10,328 netMm10,620 netMm10,827 netTarSyr2,328 netTarSyr2,620 netTarSyr2,827 refSeqComposite,47 refSeqComposite,262 refSeqComposite,1483 refSeqComposite,1511 rmsk,21 rmsk,64 rmsk,158 rmsk,171 rmsk,197 simpleRepeat,27 transMapEnsemblV5,617 transMapEstV5,586 transMapRefSeqV5,586 transMapRnaV5,586 transMapV5,145 transMapV5,692 uniprot,158 uniprot,1380 uniprot,1768 xenoMrna,253 while chainHg38,218 chainMm10,218 chainNetHg38,221 chainNetMm10,221 chainNetTarSyr2,221 chainTarSyr2,218 netHg38,218 netMm10,218 netTarSyr2,218 white gap,105 whole HLTOGAannotvHg38v1,63 chainHg38,468 chainMm10,468 chainNetHg38,471 chainNetMm10,471 chainNetTarSyr2,471 chainTarSyr2,468 cpgIslandExt,167 cpgIslandExtUnmasked,170 cpgIslandSuper,167 gap,128 gold,150 netHg38,468 netMm10,468 netTarSyr2,468 refSeqComposite,1499 transMapEnsemblV5,607 transMapEstV5,576 transMapRefSeqV5,576 transMapRnaV5,576 transMapV5,682 whose refSeqComposite,221 refSeqComposite,350 refSeqComposite,967 transMapEnsemblV5,219 transMapEstV5,188 transMapRefSeqV5,188 transMapRnaV5,188 transMapV5,294 xenoMrna,80 width cpgIslandExt,430 cpgIslandExt,467 cpgIslandExt,470 cpgIslandExt,478 cpgIslandExtUnmasked,433 cpgIslandExtUnmasked,470 cpgIslandExtUnmasked,473 cpgIslandExtUnmasked,481 cpgIslandSuper,430 cpgIslandSuper,467 cpgIslandSuper,470 cpgIslandSuper,478 wildcards mrna,217 xenoMrna,291 will mrna,250 mrna,268 mrna,297 mrna,314 rmsk,277 rmsk,283 transMapEnsemblV5,61 uniprot,537 uniprot,665 uniprot,754 uniprot,1142 uniprot,1162 xenoMrna,324 xenoMrna,342 xenoMrna,371 xenoMrna,388 window-based windowmaskerSdust,101 windowmasker windowmaskerSdust,7 windowmaskerSdust,21 windowmaskerSdust,23 windowmaskerSdust,51 windowmaskerSdust,58 windowmaskerSdust,65 windowmaskerSdust,100 windowmaskersdust windowmaskerSdust,83 windows gc5BaseBw,7 gc5BaseBw,28 wish mrna,181 refSeqComposite,173 xenoMrna,255 xenoRefGene,207 with HLTOGAannotvHg38v1,359 augustusGene,127 augustusGene,322 chainHg38,42 chainHg38,209 chainHg38,220 chainHg38,592 chainHg38,705 chainHg38,781 chainHg38,905 chainHg38,937 chainHg38,969 chainHg38,1106 chainMm10,42 chainMm10,209 chainMm10,220 chainMm10,592 chainMm10,705 chainMm10,781 chainMm10,905 chainMm10,937 chainMm10,969 chainMm10,1106 chainNetHg38,45 chainNetHg38,212 chainNetHg38,223 chainNetHg38,595 chainNetHg38,708 chainNetHg38,784 chainNetHg38,908 chainNetHg38,940 chainNetHg38,972 chainNetHg38,1109 chainNetMm10,45 chainNetMm10,212 chainNetMm10,223 chainNetMm10,595 chainNetMm10,708 chainNetMm10,784 chainNetMm10,908 chainNetMm10,940 chainNetMm10,972 chainNetMm10,1109 chainNetTarSyr2,45 chainNetTarSyr2,212 chainNetTarSyr2,223 chainNetTarSyr2,595 chainNetTarSyr2,708 chainNetTarSyr2,784 chainNetTarSyr2,908 chainNetTarSyr2,940 chainNetTarSyr2,972 chainNetTarSyr2,1109 chainTarSyr2,42 chainTarSyr2,209 chainTarSyr2,220 chainTarSyr2,592 chainTarSyr2,705 chainTarSyr2,781 chainTarSyr2,905 chainTarSyr2,937 chainTarSyr2,969 chainTarSyr2,1106 cpgIslandExt,19 cpgIslandExt,39 cpgIslandExt,141 cpgIslandExt,540 cpgIslandExtUnmasked,22 cpgIslandExtUnmasked,42 cpgIslandExtUnmasked,144 cpgIslandExtUnmasked,543 cpgIslandSuper,19 cpgIslandSuper,39 cpgIslandSuper,141 cpgIslandSuper,540 gap,53 gc5BaseBw,35 gold,52 gold,142 microsat,69 microsat,76 mrna,435 nestedRepeats,133 netHg38,42 netHg38,209 netHg38,220 netHg38,592 netHg38,705 netHg38,781 netHg38,905 netHg38,937 netHg38,969 netHg38,1106 netMm10,42 netMm10,209 netMm10,220 netMm10,592 netMm10,705 netMm10,781 netMm10,905 netMm10,937 netMm10,969 netMm10,1106 netTarSyr2,42 netTarSyr2,209 netTarSyr2,220 netTarSyr2,592 netTarSyr2,705 netTarSyr2,781 netTarSyr2,905 netTarSyr2,937 netTarSyr2,969 netTarSyr2,1106 refSeqComposite,224 refSeqComposite,353 refSeqComposite,491 refSeqComposite,954 refSeqComposite,983 refSeqComposite,1042 refSeqComposite,1069 refSeqComposite,1095 refSeqComposite,1134 refSeqComposite,1240 refSeqComposite,1284 refSeqComposite,1402 rmsk,111 rmsk,225 simpleRepeat,52 transMapEnsemblV5,51 transMapEnsemblV5,183 transMapEnsemblV5,252 transMapEnsemblV5,353 transMapEnsemblV5,355 transMapEnsemblV5,584 transMapEstV5,152 transMapEstV5,221 transMapEstV5,322 transMapEstV5,324 transMapEstV5,553 transMapRefSeqV5,152 transMapRefSeqV5,221 transMapRefSeqV5,322 transMapRefSeqV5,324 transMapRefSeqV5,553 transMapRnaV5,152 transMapRnaV5,221 transMapRnaV5,322 transMapRnaV5,324 transMapRnaV5,553 transMapV5,258 transMapV5,327 transMapV5,428 transMapV5,430 transMapV5,659 uniprot,183 uniprot,258 uniprot,280 uniprot,458 uniprot,639 uniprot,716 uniprot,788 uniprot,946 uniprot,1475 uniprot,1481 uniprot,1496 uniprot,1501 uniprot,1718 uniprot,1948 windowmaskerSdust,54 xenoMrna,509 xenoRefGene,230 xenoRefGene,274 within gold,117 mrna,85 mrna,424 refSeqComposite,725 refSeqComposite,1273 simpleRepeat,37 transMapEnsemblV5,655 transMapEstV5,624 transMapRefSeqV5,624 transMapRnaV5,624 transMapV5,730 uniprot,1109 uniprot,1313 uniprot,1345 uniprot,1488 uniprot,1806 xenoMrna,159 xenoMrna,498 xenoRefGene,84 xenoRefGene,263 without uniprot,139 wj chainHg38,1049 chainHg38,1091 chainMm10,1049 chainMm10,1091 chainNetHg38,1052 chainNetHg38,1094 chainNetMm10,1052 chainNetMm10,1094 chainNetTarSyr2,1052 chainNetTarSyr2,1094 chainTarSyr2,1049 chainTarSyr2,1091 mrna,519 netHg38,1049 netHg38,1091 netMm10,1049 netMm10,1091 netTarSyr2,1049 netTarSyr2,1091 refSeqComposite,1733 xenoMrna,593 xenoRefGene,304 wm windowmaskerSdust,1 wm_counts windowmaskerSdust,64 windowmaskerSdust,67 words uniprot,1201 worldwide mrna,462 refSeqComposite,1723 transMapEnsemblV5,701 transMapEstV5,670 transMapRefSeqV5,670 transMapRnaV5,670 transMapV5,776 xenoMrna,536 xenoRefGene,294 would cpgIslandExt,184 cpgIslandExtUnmasked,187 cpgIslandSuper,184 ensGene,147 wrench refSeqComposite,753 written genscan,19 microsat,109 simpleRepeat,69 www.repeatmasker.org nestedRepeats,333 rmsk,356 x uniprot,1923 xm refSeqComposite,354 xm_ ncbiRefSeq,10 ncbiRefSeqOther,10 ncbiRefSeqPredicted,8 xml uniprot,1510 xr refSeqComposite,356 xr_ ncbiRefSeq,12 ncbiRefSeqOther,11 ncbiRefSeqPredicted,10 y ensGene,177 yap chainHg38,1032 chainMm10,1032 chainNetHg38,1035 chainNetMm10,1035 chainNetTarSyr2,1035 chainTarSyr2,1032 netHg38,1032 netMm10,1032 netTarSyr2,1032 years uniprot,933 yet refSeqComposite,676 refSeqComposite,701 yip uniprot,2010 yl uniprot,2011 you mrna,180 refSeqComposite,172 refSeqComposite,1352 refSeqComposite,1460 refSeqComposite,1544 refSeqComposite,1564 refSeqComposite,1634 rmsk,115 uniprot,655 uniprot,689 uniprot,1443 xenoMrna,254 xenoRefGene,206 younger nestedRepeats,94 your refSeqComposite,1526 refSeqComposite,1639 transMapEnsemblV5,632 transMapEstV5,601 transMapRefSeqV5,601 transMapRnaV5,601 transMapV5,707 uniprot,1783 yp refSeqComposite,229 refSeqComposite,232 refSeqComposite,242 yp_ ncbiRefSeq,14 ncbiRefSeqCurated,12 ncbiRefSeqOther,14 z chainHg38,1095 chainMm10,1095 chainNetHg38,1098 chainNetMm10,1098 chainNetTarSyr2,1098 chainTarSyr2,1095 netHg38,1095 netMm10,1095 netTarSyr2,1095 zebrafish augustusGene,202 augustusGene,278 zhang chainHg38,933 chainHg38,1094 chainMm10,933 chainMm10,1094 chainNetHg38,936 chainNetHg38,1097 chainNetMm10,936 chainNetMm10,1097 chainNetTarSyr2,936 chainNetTarSyr2,1097 chainTarSyr2,933 chainTarSyr2,1094 netHg38,933 netHg38,1094 netMm10,933 netMm10,1094 netTarSyr2,933 netTarSyr2,1094 zheng chainHg38,932 chainMm10,932 chainNetHg38,935 chainNetMm10,935 chainNetTarSyr2,935 chainTarSyr2,932 netHg38,932 netMm10,932 netTarSyr2,932 zhu transMapEnsemblV5,787 transMapEstV5,756 transMapRefSeqV5,756 transMapRnaV5,756 transMapV5,862 zinc uniprot,326 zoomed-in genscan,103