0 nestedRepeats,237 0.01 cpgIslandExt,473 cpgIslandExtUnmasked,476 cpgIslandSuper,473 0.0f cpgIslandExt,449 cpgIslandExtUnmasked,452 cpgIslandSuper,449 0.1 refSeqComposite,1279 0.1f cpgIslandExt,451 cpgIslandExtUnmasked,454 cpgIslandSuper,451 0.2 augustusGene,136 0.5 augustusGene,138 mrna,429 xenoRefGene,267 0.6 cpgIslandExt,276 cpgIslandExtUnmasked,279 cpgIslandSuper,276 1 augustusGene,310 chainMm10,397 chainMm10,528 chainMm10,722 chainMm10,1121 chainNetMm10,400 chainNetMm10,531 chainNetMm10,725 chainNetMm10,1124 cpgIslandExt,245 cpgIslandExt,429 cpgIslandExt,458 cpgIslandExt,485 cpgIslandExtUnmasked,248 cpgIslandExtUnmasked,432 cpgIslandExtUnmasked,461 cpgIslandExtUnmasked,488 cpgIslandSuper,245 cpgIslandSuper,429 cpgIslandSuper,458 cpgIslandSuper,485 ensGene,200 ensGene,202 genscan,227 mrna,513 netMm10,397 netMm10,528 netMm10,722 netMm10,1121 refSeqComposite,1822 xenoMrna,502 xenoMrna,586 xenoRefGene,390 100 augustusGene,134 chainMm10,1089 chainNetMm10,1092 microsat,70 nestedRepeats,230 netMm10,1089 100.0 cpgIslandExt,474 cpgIslandExtUnmasked,477 cpgIslandSuper,474 1000 chainMm10,761 chainNetMm10,764 nestedRepeats,238 netMm10,761 1000-2000 augustusGene,161 103-7 chainMm10,1122 chainNetMm10,1125 netMm10,1122 10607616 nestedRepeats,394 rmsk,417 10973072 nestedRepeats,361 rmsk,384 11 chainMm10,718 chainMm10,725 chainNetMm10,721 chainNetMm10,728 netMm10,718 netMm10,725 111 chainMm10,720 chainMm10,726 chainNetMm10,723 chainNetMm10,729 netMm10,720 netMm10,726 11484-9 chainMm10,1091 chainNetMm10,1094 netMm10,1091 115-26 chainMm10,1053 chainNetMm10,1056 netMm10,1053 11752248 ensGene,205 117900 chainMm10,742 chainMm10,754 chainNetMm10,745 chainNetMm10,757 netMm10,742 netMm10,754 118300 chainMm10,766 chainNetMm10,769 netMm10,766 11928468 chainMm10,1055 chainNetMm10,1058 netMm10,1055 11932250 mrna,537 refSeqComposite,1752 xenoMrna,610 xenoRefGene,320 12 mrna,533 refSeqComposite,1748 xenoMrna,606 xenoRefGene,316 12111 chainMm10,728 chainNetMm10,731 netMm10,728 12529312 chainMm10,1124 chainNetMm10,1127 netMm10,1124 127-163 genscan,206 13 chainMm10,1120 chainNetMm10,1123 netMm10,1120 1300 chainMm10,762 chainNetMm10,765 netMm10,762 14500911 chainMm10,1093 chainNetMm10,1096 netMm10,1093 14534192 augustusGene,340 14681350 mrna,519 xenoMrna,592 15 microsat,30 microsat,79 microsat,130 refSeqComposite,1251 simpleRepeat,90 xenoRefGene,239 152111 chainMm10,731 chainNetMm10,734 netMm10,731 15608248 refSeqComposite,1828 xenoRefGene,396 16 nestedRepeats,357 rmsk,380 16951 gap,23 gold,22 17 cpgIslandExt,241 cpgIslandExtUnmasked,244 cpgIslandSuper,241 18218656 augustusGene,315 19 augustusGene,335 196 cpgIslandExt,619 cpgIslandExtUnmasked,622 cpgIslandSuper,619 1987 cpgIslandExt,379 cpgIslandExt,616 cpgIslandExtUnmasked,382 cpgIslandExtUnmasked,619 cpgIslandSuper,379 cpgIslandSuper,616 1990 blastHg18KG,175 1996 nestedRepeats,410 rmsk,433 1996-2010 nestedRepeats,334 rmsk,357 1997 genscan,149 genscan,223 1998 genscan,167 genscan,204 1999 microsat,103 microsat,128 nestedRepeats,388 rmsk,411 simpleRepeat,65 simpleRepeat,88 2 augustusGene,142 augustusGene,337 chainMm10,431 chainMm10,436 chainMm10,723 chainNetMm10,434 chainNetMm10,439 chainNetMm10,726 cpgIslandExt,421 cpgIslandExt,426 cpgIslandExt,428 cpgIslandExt,434 cpgIslandExt,460 cpgIslandExt,475 cpgIslandExt,620 cpgIslandExtUnmasked,424 cpgIslandExtUnmasked,429 cpgIslandExtUnmasked,431 cpgIslandExtUnmasked,437 cpgIslandExtUnmasked,463 cpgIslandExtUnmasked,478 cpgIslandExtUnmasked,623 cpgIslandSuper,421 cpgIslandSuper,426 cpgIslandSuper,428 cpgIslandSuper,434 cpgIslandSuper,460 cpgIslandSuper,475 cpgIslandSuper,620 microsat,66 microsat,132 netMm10,431 netMm10,436 netMm10,723 simpleRepeat,92 20 chainMm10,1090 chainNetMm10,1093 cpgIslandExt,618 cpgIslandExtUnmasked,621 cpgIslandSuper,618 netMm10,1090 200 cpgIslandExt,271 cpgIslandExtUnmasked,274 cpgIslandSuper,271 2000 nestedRepeats,63 nestedRepeats,355 rmsk,99 rmsk,378 2002 chainMm10,1052 chainNetMm10,1055 ensGene,47 ensGene,198 mrna,531 netMm10,1052 refSeqComposite,1746 xenoMrna,604 xenoRefGene,314 2003 augustusGene,333 chainMm10,1086 chainMm10,1118 chainNetMm10,1089 chainNetMm10,1121 netMm10,1086 netMm10,1118 2004 mrna,511 xenoMrna,584 2005 refSeqComposite,1820 xenoRefGene,388 2007 chainMm10,1025 chainNetMm10,1028 netMm10,1025 2008 augustusGene,308 2010 gap,17 gold,16 2011 chainMm10,5 chainMm10,67 chainMm10,313 chainNetMm10,6 chainNetMm10,70 chainNetMm10,316 chainNetMm10Viewchain,4 chainNetMm10Viewnet,4 netMm10,5 netMm10,67 netMm10,313 2013 mrna,486 xenoMrna,559 2014 refSeqComposite,1787 xenoRefGene,355 2111 chainMm10,727 chainNetMm10,730 netMm10,727 215 blastHg18KG,178 217900 chainMm10,743 chainMm10,755 chainNetMm10,746 chainNetMm10,758 netMm10,743 netMm10,755 218300 chainMm10,767 chainNetMm10,770 netMm10,767 22900 chainMm10,740 chainMm10,752 chainNetMm10,743 chainNetMm10,755 netMm10,740 netMm10,752 23193287 mrna,493 xenoMrna,566 23300 chainMm10,764 chainNetMm10,767 netMm10,764 24 augustusGene,311 24259432 refSeqComposite,1794 xenoRefGene,362 25 genscan,225 xenoMrna,509 xenoRefGene,274 252111 chainMm10,732 chainNetMm10,735 netMm10,732 261-82 cpgIslandExt,621 cpgIslandExtUnmasked,624 cpgIslandSuper,621 268 genscan,226 27 microsat,131 simpleRepeat,91 2900 chainMm10,739 chainMm10,751 chainNetMm10,742 chainNetMm10,754 netMm10,739 netMm10,751 2n cpgIslandExt,487 cpgIslandExtUnmasked,490 cpgIslandSuper,487 3 augustusGene,140 blastHg18KG,179 chainMm10,443 chainMm10,724 chainNetMm10,446 chainNetMm10,727 cpgIslandExt,432 cpgIslandExt,462 cpgIslandExtUnmasked,435 cpgIslandExtUnmasked,465 cpgIslandSuper,432 cpgIslandSuper,462 microsat,68 netMm10,443 netMm10,724 xenoMrna,92 3.1 augustusGene,24 30 chainMm10,1088 chainNetMm10,1091 ensGene,201 netMm10,1088 300 cpgIslandExt,6 cpgIslandExtUnmasked,9 cpgIslandSuper,6 3000 chainMm10,696 chainNetMm10,699 netMm10,696 317900 chainMm10,744 chainMm10,756 chainNetMm10,747 chainNetMm10,759 netMm10,744 netMm10,756 318300 chainMm10,768 chainNetMm10,771 netMm10,768 32 mrna,514 xenoMrna,587 32111 chainMm10,729 chainNetMm10,732 netMm10,729 33 refSeqComposite,1823 xenoRefGene,391 3300 chainMm10,763 chainNetMm10,766 netMm10,763 34990190 refSeqComposite,1565 350 chainMm10,734 chainMm10,746 chainNetMm10,737 chainNetMm10,749 netMm10,734 netMm10,746 3656447 cpgIslandExt,623 cpgIslandExtUnmasked,626 cpgIslandSuper,623 36727467 refSeqComposite,1567 38-41 ensGene,203 39s ensGene,163 4 mrna,534 refSeqComposite,1749 xenoMrna,607 xenoRefGene,317 403-410 blastHg18KG,180 41 mrna,488 xenoMrna,561 418-420 nestedRepeats,359 rmsk,382 42 refSeqComposite,1789 xenoRefGene,357 425 chainMm10,735 chainMm10,747 chainNetMm10,738 chainNetMm10,750 netMm10,735 netMm10,747 45 refSeqComposite,949 450 chainMm10,736 chainMm10,748 chainNetMm10,739 chainNetMm10,751 netMm10,736 netMm10,748 5 augustusGene,312 blastHg18KG,177 cpgIslandExt,464 cpgIslandExtUnmasked,467 cpgIslandSuper,464 xenoMrna,90 5-base gc5BaseBw,6 gc5BaseBw,27 50 cpgIslandExt,265 cpgIslandExtUnmasked,268 cpgIslandSuper,265 nestedRepeats,229 573-80 microsat,133 simpleRepeat,93 57900 chainMm10,741 chainMm10,753 chainNetMm10,744 chainNetMm10,756 netMm10,741 netMm10,753 58300 chainMm10,765 chainNetMm10,768 netMm10,765 6 cpgIslandExt,466 cpgIslandExt,469 cpgIslandExt,477 cpgIslandExtUnmasked,469 cpgIslandExtUnmasked,472 cpgIslandExtUnmasked,480 cpgIslandSuper,466 cpgIslandSuper,469 cpgIslandSuper,477 nestedRepeats,391 nestedRepeats,412 nestedRepeats,413 rmsk,414 rmsk,435 rmsk,436 60 blastHg18KG,111 blastHg18KG,123 blastHg18KG,131 600 chainMm10,737 chainMm10,749 chainNetMm10,740 chainNetMm10,752 netMm10,737 netMm10,749 637-44 augustusGene,313 656-64 mrna,535 refSeqComposite,1750 xenoMrna,608 xenoRefGene,318 657-63 nestedRepeats,392 rmsk,415 7 cpgIslandExt,472 cpgIslandExt,480 cpgIslandExtUnmasked,475 cpgIslandExtUnmasked,483 cpgIslandSuper,472 cpgIslandSuper,480 72111 chainMm10,730 chainNetMm10,733 netMm10,730 743-8 nestedRepeats,414 rmsk,437 750 chainMm10,758 chainNetMm10,761 netMm10,758 78-94 genscan,228 825 chainMm10,759 chainNetMm10,762 netMm10,759 850 chainMm10,760 chainNetMm10,763 netMm10,760 8994846 nestedRepeats,416 rmsk,439 9 cpgIslandExt,482 cpgIslandExtUnmasked,485 cpgIslandSuper,482 nestedRepeats,358 nestedRepeats,390 rmsk,381 rmsk,413 900 chainMm10,738 chainMm10,750 chainNetMm10,741 chainNetMm10,753 netMm10,738 netMm10,750 9149143 genscan,230 96 mrna,436 refSeqComposite,1286 9862982 microsat,135 simpleRepeat,95 a augustusGene,116 augustusGene,128 augustusGene,152 augustusGene,215 augustusGene,218 augustusGene,233 augustusGene,323 augustusGene,328 chainMm10,77 chainMm10,148 chainMm10,202 chainMm10,463 chainMm10,473 chainMm10,477 chainMm10,544 chainMm10,561 chainMm10,564 chainMm10,632 chainMm10,637 chainMm10,644 chainMm10,648 chainMm10,659 chainMm10,691 chainMm10,810 chainMm10,824 chainMm10,830 chainMm10,836 chainMm10,840 chainMm10,843 chainMm10,871 chainMm10,1061 chainMm10,1085 chainMm10,1101 chainNetMm10,80 chainNetMm10,151 chainNetMm10,205 chainNetMm10,466 chainNetMm10,476 chainNetMm10,480 chainNetMm10,547 chainNetMm10,564 chainNetMm10,567 chainNetMm10,635 chainNetMm10,640 chainNetMm10,647 chainNetMm10,651 chainNetMm10,662 chainNetMm10,694 chainNetMm10,813 chainNetMm10,827 chainNetMm10,833 chainNetMm10,839 chainNetMm10,843 chainNetMm10,846 chainNetMm10,874 chainNetMm10,1064 chainNetMm10,1088 chainNetMm10,1104 cpgIslandExt,43 cpgIslandExt,50 cpgIslandExt,54 cpgIslandExt,128 cpgIslandExt,166 cpgIslandExt,236 cpgIslandExt,590 cpgIslandExt,593 cpgIslandExtUnmasked,46 cpgIslandExtUnmasked,53 cpgIslandExtUnmasked,57 cpgIslandExtUnmasked,131 cpgIslandExtUnmasked,169 cpgIslandExtUnmasked,239 cpgIslandExtUnmasked,593 cpgIslandExtUnmasked,596 cpgIslandSuper,43 cpgIslandSuper,50 cpgIslandSuper,54 cpgIslandSuper,128 cpgIslandSuper,166 cpgIslandSuper,236 cpgIslandSuper,590 cpgIslandSuper,593 ensGene,31 gap,64 gap,68 gap,98 gap,114 gap,117 gap,124 gap,127 gc5BaseBw,44 genscan,102 genscan,132 gold,60 gold,119 gold,125 microsat,53 microsat,119 mrna,67 mrna,84 mrna,119 mrna,145 mrna,218 mrna,337 mrna,405 mrna,424 nestedRepeats,177 nestedRepeats,226 nestedRepeats,344 nestedRepeats,363 netMm10,77 netMm10,148 netMm10,202 netMm10,463 netMm10,473 netMm10,477 netMm10,544 netMm10,561 netMm10,564 netMm10,632 netMm10,637 netMm10,644 netMm10,648 netMm10,659 netMm10,691 netMm10,810 netMm10,824 netMm10,830 netMm10,836 netMm10,840 netMm10,843 netMm10,871 netMm10,1061 netMm10,1085 netMm10,1101 refSeqComposite,149 refSeqComposite,160 refSeqComposite,297 refSeqComposite,312 refSeqComposite,537 refSeqComposite,650 refSeqComposite,798 refSeqComposite,1060 refSeqComposite,1255 refSeqComposite,1274 refSeqComposite,1527 refSeqComposite,1546 refSeqComposite,1572 refSeqComposite,1661 refSeqComposite,1764 refSeqComposite,1807 rmsk,36 rmsk,56 rmsk,226 rmsk,240 rmsk,367 rmsk,386 simpleRepeat,79 xenoMrna,111 xenoMrna,140 xenoMrna,157 xenoMrna,192 xenoMrna,218 xenoMrna,291 xenoMrna,410 xenoMrna,477 xenoMrna,497 xenoRefGene,243 xenoRefGene,262 xenoRefGene,332 xenoRefGene,375 a91-114-31-123 chainMm10,684 chainNetMm10,687 netMm10,684 ab augustusGene,3 augustusGene,16 abbreviated chainMm10,595 chainNetMm10,598 netMm10,595 about chainMm10,469 chainMm10,482 chainMm10,860 chainNetMm10,472 chainNetMm10,485 chainNetMm10,863 genscan,127 microsat,98 mrna,354 netMm10,469 netMm10,482 netMm10,860 refSeqComposite,97 refSeqComposite,858 refSeqComposite,1193 refSeqComposite,1390 refSeqComposite,1469 simpleRepeat,59 xenoMrna,427 xenoRefGene,180 above chainMm10,541 chainMm10,553 chainMm10,573 chainNetMm10,544 chainNetMm10,556 chainNetMm10,576 nestedRepeats,218 netMm10,541 netMm10,553 netMm10,573 abundance chainMm10,184 chainNetMm10,187 netMm10,184 acad chainMm10,1081 chainNetMm10,1084 netMm10,1081 acc ucscToRefSeq,2 acceptor genscan,32 access cpgIslandExt,505 cpgIslandExtUnmasked,508 cpgIslandSuper,505 ensGene,56 ensGene,100 refSeqComposite,1296 refSeqComposite,1360 refSeqComposite,1450 refSeqComposite,1659 accessed refSeqComposite,1305 refSeqComposite,1328 accesses refSeqComposite,1633 accessing refSeqComposite,1391 accession gap,24 gold,23 refSeqComposite,785 refSeqComposite,810 ucscToINSDC,2 ucscToINSDC,23 ucscToRefSeq,4 ucscToRefSeq,18 xenoRefGene,120 xenoRefGene,132 accessions refSeqComposite,223 refSeqComposite,352 refSeqComposite,498 according augustusGene,114 cpgIslandExt,370 cpgIslandExtUnmasked,373 cpgIslandSuper,370 nestedRepeats,183 acgt chainMm10,683 chainNetMm10,686 netMm10,683 acid blastHg18KG,63 acids blastHg18KG,137 ensGene,196 microsat,126 mrna,484 mrna,509 refSeqComposite,1785 refSeqComposite,1818 simpleRepeat,86 xenoMrna,557 xenoMrna,582 xenoRefGene,353 xenoRefGene,386 added chainMm10,605 chainNetMm10,608 nestedRepeats,147 netMm10,605 additional nestedRepeats,288 rmsk,295 additions refSeqComposite,120 adjust refSeqComposite,748 admin cpgIslandExt,577 cpgIslandExtUnmasked,580 cpgIslandSuper,577 advice chainMm10,946 chainMm10,978 chainNetMm10,949 chainNetMm10,981 netMm10,946 netMm10,978 advise refSeqComposite,79 af nestedRepeats,372 nestedRepeats,396 rmsk,395 rmsk,419 afa nestedRepeats,325 rmsk,348 affine chainMm10,87 chainNetMm10,90 netMm10,87 after chainMm10,918 chainNetMm10,921 cpgIslandExt,94 cpgIslandExt,326 cpgIslandExtUnmasked,97 cpgIslandExtUnmasked,329 cpgIslandSuper,94 cpgIslandSuper,326 netMm10,918 against mrna,347 mrna,397 refSeqComposite,1236 xenoMrna,420 xenoMrna,467 xenoRefGene,224 aids cpgIslandExt,86 cpgIslandExtUnmasked,89 cpgIslandSuper,86 al cpgIslandExt,378 cpgIslandExtUnmasked,381 cpgIslandSuper,378 ensGene,46 ensGene,189 refSeqComposite,1776 xenoRefGene,344 algorithm augustusGene,130 align chainMm10,200 chainNetMm10,203 netMm10,200 alignable chainMm10,22 chainMm10,38 chainNetMm10,25 chainNetMm10,41 netMm10,22 netMm10,38 aligned blastHg18KG,47 blastHg18KG,71 chainMm10,598 chainNetMm10,601 mrna,396 mrna,408 netMm10,598 refSeqComposite,82 refSeqComposite,191 refSeqComposite,306 refSeqComposite,902 refSeqComposite,1065 refSeqComposite,1235 refSeqComposite,1258 xenoMrna,466 xenoMrna,480 xenoRefGene,223 xenoRefGene,246 aligning chainMm10,137 chainMm10,341 chainMm10,371 chainNetMm10,140 chainNetMm10,344 chainNetMm10,374 netMm10,137 netMm10,341 netMm10,371 alignment blastHg18KG,169 chainMm10,265 chainMm10,1028 chainNetMm10,268 chainNetMm10,1031 mrna,42 mrna,365 mrna,371 mrna,383 mrna,413 mrna,527 netMm10,8 netMm10,265 netMm10,1028 refSeqComposite,195 refSeqComposite,329 refSeqComposite,462 refSeqComposite,1154 refSeqComposite,1247 refSeqComposite,1263 refSeqComposite,1742 xenoMrna,45 xenoMrna,438 xenoMrna,444 xenoMrna,456 xenoMrna,485 xenoMrna,600 xenoRefGene,235 xenoRefGene,251 xenoRefGene,310 alignments augustusGene,300 blastHg18KG,18 chainMm10,9 chainMm10,63 chainMm10,456 chainMm10,610 chainMm10,622 chainMm10,630 chainMm10,658 chainMm10,776 chainMm10,1048 chainMm10,1113 chainNetMm10,12 chainNetMm10,66 chainNetMm10,459 chainNetMm10,613 chainNetMm10,625 chainNetMm10,633 chainNetMm10,661 chainNetMm10,779 chainNetMm10,1051 chainNetMm10,1116 chainNetMm10Viewchain,10 chainNetMm10Viewnet,10 mrna,19 mrna,422 ncbiRefSeqPsl,2 ncbiRefSeqPsl,4 netMm10,63 netMm10,456 netMm10,610 netMm10,622 netMm10,630 netMm10,658 netMm10,776 netMm10,1048 netMm10,1113 refSeqComposite,269 refSeqComposite,368 refSeqComposite,435 refSeqComposite,437 refSeqComposite,1215 refSeqComposite,1272 refSeqComposite,1429 rmsk,306 xenoMrna,18 xenoMrna,495 xenoRefGene,260 all augustusGene,207 chainMm10,629 chainNetMm10,632 cpgIslandExt,327 cpgIslandExt,527 cpgIslandExtUnmasked,6 cpgIslandExtUnmasked,330 cpgIslandExtUnmasked,530 cpgIslandSuper,327 cpgIslandSuper,527 gold,137 mrna,141 mrna,195 mrna,250 ncbiRefSeq,2 nestedRepeats,138 nestedRepeats,170 netMm10,629 refSeqComposite,35 refSeqComposite,86 refSeqComposite,179 refSeqComposite,184 refSeqComposite,200 refSeqComposite,202 refSeqComposite,216 refSeqComposite,346 refSeqComposite,382 refSeqComposite,593 refSeqComposite,796 refSeqComposite,1415 refSeqComposite,1579 refSeqComposite,1671 refSeqComposite,1676 rmsk,65 xenoMrna,214 xenoMrna,268 xenoMrna,323 allows augustusGene,168 chainMm10,82 chainNetMm10,85 mrna,340 netMm10,82 refSeqComposite,829 xenoMrna,413 xenoRefGene,151 alone augustusGene,33 alpha refSeqComposite,419 already chainMm10,821 chainNetMm10,824 netMm10,821 also blastHg18KG,139 chainMm10,93 chainNetMm10,96 cpgIslandExt,531 cpgIslandExtUnmasked,534 cpgIslandSuper,531 ensGene,48 gold,45 mrna,222 mrna,330 mrna,374 netMm10,93 refSeqComposite,1133 refSeqComposite,1326 refSeqComposite,1359 refSeqComposite,1591 xenoMrna,295 xenoMrna,403 xenoMrna,447 alter mrna,78 xenoMrna,151 alternating gold,91 alternative augustusGene,122 alternatives-from-sampling augustusGene,131 altschul blastHg18KG,157 alus rmsk,160 always gold,122 xenoMrna,89 ambiguous refSeqComposite,994 amino blastHg18KG,62 blastHg18KG,136 amount rmsk,215 amsterdam genscan,201 an blastHg18KG,93 chainMm10,155 chainMm10,183 chainMm10,189 chainNetMm10,158 chainNetMm10,186 chainNetMm10,192 cpgIslandExt,66 cpgIslandExtUnmasked,69 cpgIslandSuper,66 gc5BaseBw,65 nestedRepeats,196 nestedRepeats,347 netMm10,155 netMm10,183 netMm10,189 refSeqComposite,752 refSeqComposite,823 refSeqComposite,1246 refSeqComposite,1778 rmsk,370 xenoRefGene,145 xenoRefGene,234 xenoRefGene,346 analysis refSeqComposite,77 refSeqComposite,1464 analyze microsat,122 simpleRepeat,82 and augustusGene,9 augustusGene,60 augustusGene,74 augustusGene,87 augustusGene,206 augustusGene,271 augustusGene,277 augustusGene,296 augustusGene,327 blastHg18KG,10 blastHg18KG,25 blastHg18KG,127 chainMm10,99 chainMm10,115 chainMm10,233 chainMm10,241 chainMm10,255 chainMm10,297 chainMm10,319 chainMm10,445 chainMm10,601 chainMm10,636 chainMm10,646 chainMm10,787 chainMm10,865 chainMm10,897 chainMm10,908 chainMm10,917 chainMm10,942 chainMm10,957 chainMm10,982 chainMm10,988 chainMm10,994 chainMm10,1001 chainMm10,1007 chainMm10,1071 chainMm10,1076 chainNetMm10,10 chainNetMm10,102 chainNetMm10,118 chainNetMm10,236 chainNetMm10,244 chainNetMm10,258 chainNetMm10,300 chainNetMm10,322 chainNetMm10,448 chainNetMm10,604 chainNetMm10,639 chainNetMm10,649 chainNetMm10,790 chainNetMm10,868 chainNetMm10,900 chainNetMm10,911 chainNetMm10,920 chainNetMm10,945 chainNetMm10,960 chainNetMm10,985 chainNetMm10,991 chainNetMm10,997 chainNetMm10,1004 chainNetMm10,1010 chainNetMm10,1074 chainNetMm10,1079 chainNetMm10Viewchain,8 chainNetMm10Viewnet,8 cpgIslandExt,12 cpgIslandExt,35 cpgIslandExt,183 cpgIslandExt,244 cpgIslandExt,248 cpgIslandExt,295 cpgIslandExt,508 cpgIslandExt,599 cpgIslandExtUnmasked,15 cpgIslandExtUnmasked,38 cpgIslandExtUnmasked,186 cpgIslandExtUnmasked,247 cpgIslandExtUnmasked,251 cpgIslandExtUnmasked,298 cpgIslandExtUnmasked,511 cpgIslandExtUnmasked,602 cpgIslandSuper,12 cpgIslandSuper,35 cpgIslandSuper,183 cpgIslandSuper,244 cpgIslandSuper,248 cpgIslandSuper,295 cpgIslandSuper,508 cpgIslandSuper,599 cytoBandIdeo,8 ensGene,6 ensGene,128 gap,5 gap,45 gap,67 gap,123 gap,132 gc5BaseBw,9 gc5BaseBw,22 gc5BaseBw,74 genscan,7 genscan,30 genscan,40 genscan,46 genscan,63 genscan,83 genscan,97 genscan,108 genscan,119 genscan,138 genscan,147 gold,6 gold,54 gold,93 gold,107 gold,113 microsat,4 microsat,8 microsat,33 microsat,36 microsat,67 microsat,72 microsat,75 mrna,12 mrna,27 mrna,32 mrna,81 mrna,242 mrna,361 mrna,433 ncbiRefSeq,7 ncbiRefSeq,16 ncbiRefSeqCurated,14 ncbiRefSeqPredicted,12 ncbiRefSeqPsl,8 nestedRepeats,12 nestedRepeats,38 nestedRepeats,113 nestedRepeats,162 nestedRepeats,166 nestedRepeats,231 nestedRepeats,256 nestedRepeats,309 nestedRepeats,315 nestedRepeats,346 nestedRepeats,375 netMm10,99 netMm10,115 netMm10,233 netMm10,241 netMm10,255 netMm10,297 netMm10,319 netMm10,445 netMm10,601 netMm10,636 netMm10,646 netMm10,787 netMm10,865 netMm10,897 netMm10,908 netMm10,917 netMm10,942 netMm10,957 netMm10,982 netMm10,988 netMm10,994 netMm10,1001 netMm10,1007 netMm10,1071 netMm10,1076 refSeqComposite,8 refSeqComposite,23 refSeqComposite,73 refSeqComposite,111 refSeqComposite,121 refSeqComposite,144 refSeqComposite,193 refSeqComposite,204 refSeqComposite,232 refSeqComposite,258 refSeqComposite,266 refSeqComposite,274 refSeqComposite,302 refSeqComposite,366 refSeqComposite,472 refSeqComposite,496 refSeqComposite,579 refSeqComposite,598 refSeqComposite,661 refSeqComposite,671 refSeqComposite,711 refSeqComposite,723 refSeqComposite,809 refSeqComposite,834 refSeqComposite,867 refSeqComposite,887 refSeqComposite,919 refSeqComposite,961 refSeqComposite,977 refSeqComposite,1000 refSeqComposite,1015 refSeqComposite,1132 refSeqComposite,1151 refSeqComposite,1177 refSeqComposite,1182 refSeqComposite,1283 refSeqComposite,1378 refSeqComposite,1480 refSeqComposite,1498 refSeqComposite,1638 refSeqComposite,1679 refSeqComposite,1729 refSeqComposite,1815 rmsk,7 rmsk,28 rmsk,137 rmsk,221 rmsk,332 rmsk,338 rmsk,369 rmsk,398 simpleRepeat,9 simpleRepeat,42 ucscToINSDC,11 ucscToRefSeq,6 xenoMrna,10 xenoMrna,21 xenoMrna,35 xenoMrna,154 xenoMrna,315 xenoMrna,434 xenoMrna,506 xenoRefGene,9 xenoRefGene,18 xenoRefGene,47 xenoRefGene,81 xenoRefGene,131 xenoRefGene,156 xenoRefGene,189 xenoRefGene,202 xenoRefGene,271 xenoRefGene,298 xenoRefGene,383 annotated refSeqComposite,562 rmsk,67 annotation chainMm10,308 chainNetMm10,311 ensGene,165 netMm10,308 refSeqComposite,68 refSeqComposite,672 refSeqComposite,1121 refSeqComposite,1150 refSeqComposite,1196 rmsk,38 annotations ensGene,156 genscan,120 nestedRepeats,71 refSeqComposite,192 refSeqComposite,198 refSeqComposite,206 refSeqComposite,221 refSeqComposite,350 refSeqComposite,384 refSeqComposite,486 refSeqComposite,868 refSeqComposite,1476 refSeqComposite,1508 refSeqComposite,1544 xenoRefGene,190 another refSeqComposite,328 any mrna,265 refSeqComposite,275 refSeqComposite,1361 xenoMrna,338 api cpgIslandExt,519 cpgIslandExtUnmasked,522 cpgIslandSuper,519 ensGene,109 refSeqComposite,1317 refSeqComposite,1371 apply mrna,137 xenoMrna,210 appropriate refSeqComposite,779 xenoRefGene,114 apr genscan,224 mrna,532 refSeqComposite,1747 xenoMrna,605 xenoRefGene,315 apsects gc5BaseBw,51 arbitrary refSeqComposite,945 archive ensGene,142 refSeqComposite,1713 archives refSeqComposite,1352 refSeqComposite,1697 are augustusGene,27 chainMm10,21 chainMm10,40 chainMm10,53 chainMm10,144 chainMm10,216 chainMm10,227 chainMm10,330 chainMm10,399 chainMm10,420 chainMm10,427 chainMm10,510 chainMm10,703 chainNetMm10,24 chainNetMm10,43 chainNetMm10,56 chainNetMm10,147 chainNetMm10,219 chainNetMm10,230 chainNetMm10,333 chainNetMm10,402 chainNetMm10,423 chainNetMm10,430 chainNetMm10,513 chainNetMm10,706 cpgIslandExt,8 cpgIslandExt,17 cpgIslandExt,28 cpgIslandExt,116 cpgIslandExt,149 cpgIslandExt,153 cpgIslandExtUnmasked,11 cpgIslandExtUnmasked,20 cpgIslandExtUnmasked,31 cpgIslandExtUnmasked,119 cpgIslandExtUnmasked,152 cpgIslandExtUnmasked,156 cpgIslandSuper,8 cpgIslandSuper,17 cpgIslandSuper,28 cpgIslandSuper,116 cpgIslandSuper,149 cpgIslandSuper,153 ensGene,81 ensGene,121 gap,33 gap,101 gap,146 genscan,25 genscan,160 gold,62 gold,85 gold,102 gold,142 microsat,16 microsat,25 microsat,52 mrna,51 mrna,98 mrna,108 nestedRepeats,74 nestedRepeats,102 nestedRepeats,140 nestedRepeats,146 nestedRepeats,164 nestedRepeats,172 nestedRepeats,181 nestedRepeats,209 nestedRepeats,274 nestedRepeats,281 netMm10,21 netMm10,40 netMm10,53 netMm10,144 netMm10,216 netMm10,227 netMm10,330 netMm10,399 netMm10,420 netMm10,427 netMm10,510 netMm10,703 refSeqComposite,181 refSeqComposite,234 refSeqComposite,408 refSeqComposite,429 refSeqComposite,772 refSeqComposite,897 refSeqComposite,939 refSeqComposite,1003 refSeqComposite,1030 refSeqComposite,1348 refSeqComposite,1382 refSeqComposite,1405 refSeqComposite,1483 rmsk,43 rmsk,288 rmsk,304 rmsk,312 simpleRepeat,49 xenoMrna,54 xenoMrna,120 xenoMrna,171 xenoMrna,181 xenoRefGene,42 xenoRefGene,107 xenoRefGene,205 areas cpgIslandExt,305 cpgIslandExtUnmasked,308 cpgIslandSuper,305 gc5BaseBw,37 arian chainMm10,955 chainNetMm10,958 nestedRepeats,305 netMm10,955 rmsk,16 rmsk,328 arrangement cpgIslandExt,67 cpgIslandExtUnmasked,70 cpgIslandSuper,67 arrows nestedRepeats,145 nestedRepeats,163 articles refSeqComposite,1109 as augustusGene,77 augustusGene,79 chainMm10,472 chainMm10,512 chainMm10,535 chainMm10,550 chainMm10,814 chainMm10,869 chainMm10,927 chainNetMm10,475 chainNetMm10,515 chainNetMm10,538 chainNetMm10,553 chainNetMm10,817 chainNetMm10,872 chainNetMm10,930 cpgIslandExt,165 cpgIslandExt,548 cpgIslandExt,550 cpgIslandExtUnmasked,168 cpgIslandExtUnmasked,551 cpgIslandExtUnmasked,553 cpgIslandSuper,165 cpgIslandSuper,548 cpgIslandSuper,550 ensGene,87 gap,35 genscan,35 genscan,37 gold,47 microsat,21 nestedRepeats,125 netMm10,472 netMm10,512 netMm10,535 netMm10,550 netMm10,814 netMm10,869 netMm10,927 refSeqComposite,415 refSeqComposite,510 refSeqComposite,530 refSeqComposite,543 refSeqComposite,630 refSeqComposite,898 refSeqComposite,1227 refSeqComposite,1410 refSeqComposite,1526 refSeqComposite,1646 rmsk,53 rmsk,55 xenoMrna,127 xenoMrna,132 ask refSeqComposite,124 aspect refSeqComposite,713 assembled gold,35 assemblies augustusGene,196 augustusGene,237 chainMm10,329 chainMm10,593 chainNetMm10,332 chainNetMm10,596 netMm10,329 netMm10,593 refSeqComposite,185 rmsk,107 assembly augustusGene,197 chainMm10,153 chainMm10,162 chainMm10,316 chainNetMm10,156 chainNetMm10,165 chainNetMm10,319 gap,15 gap,81 gap,110 gold,1 gold,2 gold,14 netMm10,153 netMm10,162 netMm10,316 refSeqComposite,372 refSeqComposite,482 ucscToINSDC,40 ucscToRefSeq,34 assembly.2bit cpgIslandExt,412 cpgIslandExtUnmasked,415 cpgIslandSuper,412 assessing refSeqComposite,657 associated cpgIslandExt,18 cpgIslandExt,38 cpgIslandExt,510 cpgIslandExtUnmasked,21 cpgIslandExtUnmasked,41 cpgIslandExtUnmasked,513 cpgIslandSuper,18 cpgIslandSuper,38 cpgIslandSuper,510 gc5BaseBw,34 refSeqComposite,1406 rmsk,224 simpleRepeat,51 associates ucscToINSDC,16 ucscToRefSeq,11 association refSeqComposite,689 astashyn refSeqComposite,1763 xenoRefGene,331 at blastHg18KG,129 chainMm10,429 chainMm10,809 chainMm10,931 chainMm10,966 chainMm10,971 chainMm10,1012 chainNetMm10,432 chainNetMm10,812 chainNetMm10,934 chainNetMm10,969 chainNetMm10,974 chainNetMm10,1015 cpgIslandExt,155 cpgIslandExt,218 cpgIslandExt,235 cpgIslandExtUnmasked,158 cpgIslandExtUnmasked,221 cpgIslandExtUnmasked,238 cpgIslandSuper,155 cpgIslandSuper,218 cpgIslandSuper,235 microsat,28 microsat,77 mrna,214 mrna,434 mrna,451 netMm10,429 netMm10,809 netMm10,931 netMm10,966 netMm10,971 netMm10,1012 refSeqComposite,739 refSeqComposite,1054 refSeqComposite,1158 refSeqComposite,1284 refSeqComposite,1721 rmsk,243 rmsk,267 ucscToINSDC,3 xenoMrna,287 xenoMrna,507 xenoMrna,524 xenoRefGene,95 xenoRefGene,272 xenoRefGene,288 augustus augustusGene,1 augustusGene,2 augustusGene,22 augustusGene,148 augustusGene,256 available augustusGene,239 cpgIslandExt,543 cpgIslandExtUnmasked,546 cpgIslandSuper,543 ensGene,82 ensGene,122 nestedRepeats,259 nestedRepeats,276 refSeqComposite,182 refSeqComposite,278 refSeqComposite,479 refSeqComposite,573 refSeqComposite,658 refSeqComposite,1349 refSeqComposite,1601 rmsk,73 average nestedRepeats,186 nestedRepeats,221 awk cpgIslandExt,424 cpgIslandExtUnmasked,427 cpgIslandSuper,424 axt chainMm10,614 chainMm10,621 chainNetMm10,617 chainNetMm10,624 netMm10,614 netMm10,621 axtchain chainMm10,626 chainMm10,714 chainMm10,962 chainNetMm10,629 chainNetMm10,717 chainNetMm10,965 netMm10,626 netMm10,714 netMm10,962 back chainMm10,606 chainNetMm10,609 netMm10,606 baertsch augustusGene,290 chainMm10,1000 chainMm10,1058 chainMm10,1104 chainNetMm10,1003 chainNetMm10,1061 chainNetMm10,1107 netMm10,1000 netMm10,1058 netMm10,1104 band cytoBandIdeo,2 barker ensGene,170 base cpgIslandExt,46 cpgIslandExt,53 cpgIslandExt,234 cpgIslandExtUnmasked,49 cpgIslandExtUnmasked,56 cpgIslandExtUnmasked,237 cpgIslandSuper,46 cpgIslandSuper,53 cpgIslandSuper,234 mrna,362 mrna,417 mrna,425 mrna,437 refSeqComposite,1267 refSeqComposite,1275 refSeqComposite,1287 rmsk,217 rmsk,219 rmsk,222 xenoMrna,435 xenoMrna,489 xenoMrna,498 xenoMrna,510 xenoRefGene,255 xenoRefGene,263 xenoRefGene,275 based augustusGene,28 chainMm10,332 chainMm10,358 chainNetMm10,335 chainNetMm10,361 genscan,26 gold,63 netMm10,332 netMm10,358 refSeqComposite,253 refSeqComposite,361 bases cpgIslandExt,7 cpgIslandExt,353 cpgIslandExtUnmasked,10 cpgIslandExtUnmasked,356 cpgIslandSuper,7 cpgIslandSuper,353 gc5BaseBw,25 refSeqComposite,905 basic blastHg18KG,167 basis cpgIslandExt,289 cpgIslandExtUnmasked,292 cpgIslandSuper,289 bat blastHg18KG,76 blastHg18KG,87 chainMm10,74 chainMm10,102 chainMm10,161 chainMm10,209 chainMm10,277 chainMm10,286 chainMm10,587 chainMm10,641 chainNetMm10,77 chainNetMm10,105 chainNetMm10,164 chainNetMm10,212 chainNetMm10,280 chainNetMm10,289 chainNetMm10,590 chainNetMm10,644 gap,30 gold,29 mrna,3 mrna,7 mrna,23 mrna,393 netMm10,74 netMm10,102 netMm10,161 netMm10,209 netMm10,277 netMm10,286 netMm10,587 netMm10,641 refSeqComposite,21 refSeqComposite,445 refSeqComposite,468 refSeqComposite,503 refSeqComposite,1240 xenoMrna,5 xenoMrna,32 xenoMrna,471 xenoRefGene,5 xenoRefGene,27 xenoRefGene,228 be augustusGene,99 chainMm10,110 chainMm10,439 chainNetMm10,113 chainNetMm10,442 cpgIslandExt,37 cpgIslandExt,70 cpgIslandExt,187 cpgIslandExt,513 cpgIslandExt,532 cpgIslandExt,561 cpgIslandExt,572 cpgIslandExtUnmasked,40 cpgIslandExtUnmasked,73 cpgIslandExtUnmasked,190 cpgIslandExtUnmasked,516 cpgIslandExtUnmasked,535 cpgIslandExtUnmasked,564 cpgIslandExtUnmasked,575 cpgIslandSuper,37 cpgIslandSuper,70 cpgIslandSuper,187 cpgIslandSuper,513 cpgIslandSuper,532 cpgIslandSuper,561 cpgIslandSuper,572 ensGene,61 ensGene,104 ensGene,138 gc5BaseBw,41 microsat,19 microsat,39 mrna,71 mrna,93 mrna,202 mrna,212 mrna,223 mrna,254 mrna,272 mrna,282 mrna,331 mrna,375 nestedRepeats,269 nestedRepeats,291 netMm10,110 netMm10,439 refSeqComposite,305 refSeqComposite,733 refSeqComposite,943 refSeqComposite,974 refSeqComposite,1034 refSeqComposite,1111 refSeqComposite,1199 refSeqComposite,1304 refSeqComposite,1311 refSeqComposite,1327 refSeqComposite,1399 refSeqComposite,1459 refSeqComposite,1490 refSeqComposite,1510 refSeqComposite,1518 refSeqComposite,1592 refSeqComposite,1614 refSeqComposite,1684 refSeqComposite,1709 rmsk,278 rmsk,284 rmsk,298 simpleRepeat,44 xenoMrna,144 xenoMrna,166 xenoMrna,275 xenoMrna,285 xenoMrna,296 xenoMrna,327 xenoMrna,345 xenoMrna,355 xenoMrna,404 xenoMrna,448 xenoRefGene,90 because cpgIslandExt,61 cpgIslandExt,107 cpgIslandExtUnmasked,64 cpgIslandExtUnmasked,110 cpgIslandSuper,61 cpgIslandSuper,107 xenoMrna,106 been chainMm10,580 chainNetMm10,583 nestedRepeats,89 netMm10,580 refSeqComposite,643 refSeqComposite,681 refSeqComposite,691 refSeqComposite,706 rmsk,70 rmsk,109 before chainMm10,916 chainNetMm10,919 netMm10,916 begin refSeqComposite,224 refSeqComposite,353 beginning refSeqComposite,1056 refSeqComposite,1655 beloow refSeqComposite,339 below chainMm10,690 chainNetMm10,693 ensGene,54 genscan,154 genscan,168 nestedRepeats,68 netMm10,690 refSeqComposite,1401 refSeqComposite,1538 rmsk,104 benson microsat,102 microsat,112 microsat,114 mrna,468 mrna,496 simpleRepeat,64 simpleRepeat,72 simpleRepeat,74 xenoMrna,541 xenoMrna,569 best blastHg18KG,104 chainMm10,273 chainMm10,522 chainNetMm10,276 chainNetMm10,525 mrna,432 netMm10,273 netMm10,522 refSeqComposite,1282 xenoMrna,505 xenoRefGene,270 better mrna,58 xenoMrna,61 between chainMm10,51 chainMm10,631 chainMm10,863 chainNetMm10,54 chainNetMm10,634 chainNetMm10,866 gap,91 gold,57 gold,99 gold,104 mrna,20 netMm10,51 netMm10,631 netMm10,863 refSeqComposite,66 refSeqComposite,464 refSeqComposite,882 bigbed refSeqComposite,1385 refSeqComposite,1396 refSeqComposite,1486 bigbedtobed refSeqComposite,1515 refSeqComposite,1555 bin refSeqComposite,1441 refSeqComposite,1471 binary cpgIslandExt,570 cpgIslandExtUnmasked,573 cpgIslandSuper,570 refSeqComposite,1529 biocomput chainMm10,1051 chainNetMm10,1054 netMm10,1051 bioinformatics augustusGene,307 augustusGene,332 biol blastHg18KG,174 cpgIslandExt,615 cpgIslandExtUnmasked,618 cpgIslandSuper,615 genscan,222 biology genscan,200 birds augustusGene,203 birney ensGene,172 black gap,36 gap,75 blast blastHg18KG,148 blastHg18KG,155 blast-like mrna,526 refSeqComposite,1741 xenoMrna,599 xenoRefGene,309 blastz chainMm10,928 chainMm10,1115 chainNetMm10,931 chainNetMm10,1118 netMm10,928 netMm10,1115 blat blastHg18KG,54 blastHg18KG,181 mrna,402 mrna,524 refSeqComposite,1243 refSeqComposite,1739 xenoMrna,17 xenoMrna,475 xenoMrna,597 xenoRefGene,231 blat--the xenoRefGene,308 blocks chainMm10,44 chainMm10,655 chainMm10,676 chainNetMm10,47 chainNetMm10,658 chainNetMm10,679 gold,109 gold,136 netMm10,44 netMm10,655 netMm10,676 blog cpgIslandExt,553 cpgIslandExtUnmasked,556 cpgIslandSuper,553 ensGene,131 both chainMm10,97 chainMm10,119 chainMm10,174 chainMm10,906 chainNetMm10,100 chainNetMm10,122 chainNetMm10,177 chainNetMm10,909 netMm10,97 netMm10,119 netMm10,174 netMm10,906 xenoRefGene,128 xenoRefGene,199 bothgap chainMm10,757 chainNetMm10,760 netMm10,757 boundaries blastHg18KG,59 gold,84 box chainMm10,382 chainMm10,464 chainNetMm10,385 chainNetMm10,467 gap,76 mrna,157 mrna,168 mrna,208 netMm10,382 netMm10,464 xenoMrna,230 xenoMrna,241 xenoMrna,281 xenoRefGene,218 boxes chainMm10,125 chainMm10,135 chainMm10,453 chainNetMm10,128 chainNetMm10,138 chainNetMm10,456 gap,37 mrna,128 nestedRepeats,126 netMm10,125 netMm10,135 netMm10,453 refSeqComposite,167 xenoMrna,201 bp cpgIslandExt,272 cpgIslandExtUnmasked,275 cpgIslandSuper,272 refSeqComposite,950 branch-point augustusGene,55 brian blastHg18KG,201 bridge gold,134 bridged gap,65 broad gap,18 gold,17 brown blastHg18KG,75 blastHg18KG,86 chainMm10,73 chainMm10,101 chainMm10,160 chainMm10,208 chainMm10,276 chainMm10,285 chainMm10,586 chainMm10,640 chainNetMm10,76 chainNetMm10,104 chainNetMm10,163 chainNetMm10,211 chainNetMm10,279 chainNetMm10,288 chainNetMm10,589 chainNetMm10,643 gap,29 gold,28 gold,94 gold,108 mrna,2 mrna,6 mrna,22 mrna,392 netMm10,73 netMm10,101 netMm10,160 netMm10,208 netMm10,276 netMm10,285 netMm10,586 netMm10,640 refSeqComposite,20 refSeqComposite,444 refSeqComposite,467 refSeqComposite,502 refSeqComposite,1239 refSeqComposite,1757 xenoMrna,4 xenoMrna,31 xenoMrna,470 xenoRefGene,4 xenoRefGene,26 xenoRefGene,227 xenoRefGene,325 browser chainMm10,986 chainNetMm10,989 cpgIslandExt,522 cpgIslandExtUnmasked,525 cpgIslandSuper,522 ensGene,67 mrna,175 mrna,299 mrna,316 nestedRepeats,243 netMm10,986 refSeqComposite,1129 refSeqComposite,1191 refSeqComposite,1319 refSeqComposite,1456 ucscToINSDC,19 ucscToRefSeq,14 xenoMrna,248 xenoMrna,372 xenoMrna,389 build refSeqComposite,301 built augustusGene,51 augustusGene,67 burge genscan,22 genscan,146 genscan,166 genscan,173 genscan,180 genscan,207 but blastHg18KG,98 chainMm10,555 chainNetMm10,558 netMm10,555 refSeqComposite,428 refSeqComposite,903 refSeqComposite,1036 refSeqComposite,1457 rmsk,311 button chainMm10,353 chainNetMm10,356 netMm10,353 by augustusGene,147 augustusGene,266 augustusGene,282 blastHg18KG,6 blastHg18KG,184 blastHg18KG,197 chainMm10,112 chainMm10,128 chainMm10,323 chainMm10,386 chainMm10,423 chainMm10,441 chainMm10,823 chainMm10,935 chainMm10,954 chainMm10,974 chainMm10,998 chainMm10,1019 chainNetMm10,115 chainNetMm10,131 chainNetMm10,326 chainNetMm10,389 chainNetMm10,426 chainNetMm10,444 chainNetMm10,826 chainNetMm10,938 chainNetMm10,957 chainNetMm10,977 chainNetMm10,1001 chainNetMm10,1022 cpgIslandExt,49 cpgIslandExt,194 cpgIslandExt,229 cpgIslandExt,406 cpgIslandExt,596 cpgIslandExtUnmasked,52 cpgIslandExtUnmasked,197 cpgIslandExtUnmasked,232 cpgIslandExtUnmasked,409 cpgIslandExtUnmasked,599 cpgIslandSuper,49 cpgIslandSuper,194 cpgIslandSuper,229 cpgIslandSuper,406 cpgIslandSuper,596 ensGene,15 gap,58 gap,103 gc5BaseBw,81 genscan,20 genscan,88 genscan,121 gold,87 microsat,110 mrna,217 mrna,464 nestedRepeats,8 nestedRepeats,91 nestedRepeats,129 netMm10,112 netMm10,128 netMm10,323 netMm10,386 netMm10,423 netMm10,441 netMm10,823 netMm10,935 netMm10,954 netMm10,974 netMm10,998 netMm10,1019 refSeqComposite,40 refSeqComposite,51 refSeqComposite,71 refSeqComposite,208 refSeqComposite,373 refSeqComposite,386 refSeqComposite,448 refSeqComposite,563 refSeqComposite,632 refSeqComposite,645 refSeqComposite,649 refSeqComposite,693 refSeqComposite,769 refSeqComposite,774 refSeqComposite,851 refSeqComposite,869 refSeqComposite,1208 refSeqComposite,1726 refSeqComposite,1731 rmsk,4 rmsk,14 rmsk,50 simpleRepeat,6 simpleRepeat,22 simpleRepeat,70 ucscToINSDC,50 ucscToRefSeq,44 xenoMrna,290 xenoMrna,537 xenoRefGene,104 xenoRefGene,109 xenoRefGene,173 xenoRefGene,191 xenoRefGene,197 xenoRefGene,295 xenoRefGene,300 c cpgIslandExt,44 cpgIslandExt,389 cpgIslandExtUnmasked,47 cpgIslandExtUnmasked,392 cpgIslandSuper,44 cpgIslandSuper,389 gc5BaseBw,23 genscan,181 genscan,208 refSeqComposite,921 refSeqComposite,962 refSeqComposite,989 refSeqComposite,1048 refSeqComposite,1075 refSeqComposite,1087 c-114100-125-31 chainMm10,685 chainNetMm10,688 netMm10,685 caenorhabditis augustusGene,212 calculated cpgIslandExt,369 cpgIslandExtUnmasked,372 cpgIslandSuper,369 calculation cpgIslandExt,399 cpgIslandExtUnmasked,402 cpgIslandSuper,399 california chainMm10,970 chainMm10,1016 chainNetMm10,973 chainNetMm10,1019 netMm10,970 netMm10,1016 cameron ensGene,174 can augustusGene,98 chainMm10,92 chainMm10,109 chainNetMm10,95 chainNetMm10,112 cpgIslandExt,512 cpgIslandExt,530 cpgIslandExt,560 cpgIslandExt,571 cpgIslandExtUnmasked,515 cpgIslandExtUnmasked,533 cpgIslandExtUnmasked,563 cpgIslandExtUnmasked,574 cpgIslandSuper,512 cpgIslandSuper,530 cpgIslandSuper,560 cpgIslandSuper,571 ensGene,60 ensGene,103 ensGene,137 mrna,70 mrna,201 netMm10,92 netMm10,109 refSeqComposite,288 refSeqComposite,732 refSeqComposite,1110 refSeqComposite,1198 refSeqComposite,1303 refSeqComposite,1310 refSeqComposite,1325 refSeqComposite,1358 refSeqComposite,1398 refSeqComposite,1458 refSeqComposite,1466 refSeqComposite,1489 refSeqComposite,1509 refSeqComposite,1517 refSeqComposite,1570 refSeqComposite,1590 refSeqComposite,1613 refSeqComposite,1683 refSeqComposite,1708 rmsk,116 simpleRepeat,35 xenoMrna,143 xenoMrna,274 xenoRefGene,89 cases chainMm10,196 chainMm10,410 chainNetMm10,199 chainNetMm10,413 netMm10,196 netMm10,410 categorized chainMm10,511 chainNetMm10,514 netMm10,511 cauldron chainMm10,1068 chainNetMm10,1071 netMm10,1068 cause chainMm10,493 chainNetMm10,496 netMm10,493 caused chainMm10,111 chainNetMm10,114 netMm10,111 cavanaugh mrna,470 xenoMrna,543 cdna augustusGene,299 refSeqComposite,268 refSeqComposite,364 cerevisiae augustusGene,222 certain nestedRepeats,294 rmsk,301 cg cpgIslandExt,243 cpgIslandExt,281 cpgIslandExt,339 cpgIslandExtUnmasked,246 cpgIslandExtUnmasked,284 cpgIslandExtUnmasked,342 cpgIslandSuper,243 cpgIslandSuper,281 cpgIslandSuper,339 chain chainMm10,2 chainMm10,27 chainMm10,57 chainMm10,60 chainMm10,122 chainMm10,278 chainMm10,321 chainMm10,416 chainMm10,471 chainMm10,575 chainMm10,783 chainMm10,826 chainMm10,837 chainMm10,845 chainMm10,850 chainMm10,873 chainMm10,882 chainNetMm10,2 chainNetMm10,9 chainNetMm10,30 chainNetMm10,60 chainNetMm10,63 chainNetMm10,125 chainNetMm10,281 chainNetMm10,324 chainNetMm10,419 chainNetMm10,474 chainNetMm10,578 chainNetMm10,786 chainNetMm10,829 chainNetMm10,840 chainNetMm10,848 chainNetMm10,853 chainNetMm10,876 chainNetMm10,885 chainNetMm10Viewchain,1 chainNetMm10Viewchain,7 chainNetMm10Viewnet,7 netMm10,27 netMm10,57 netMm10,60 netMm10,122 netMm10,278 netMm10,321 netMm10,416 netMm10,471 netMm10,575 netMm10,783 netMm10,826 netMm10,837 netMm10,845 netMm10,850 netMm10,873 netMm10,882 chained blastHg18KG,7 blastHg18KG,90 chainMm10,8 chainnet chainMm10,800 chainMm10,1005 chainNetMm10,803 chainNetMm10,1008 netMm10,800 netMm10,1005 chains blastHg18KG,106 blastHg18KG,119 chainMm10,199 chainMm10,212 chainMm10,223 chainMm10,326 chainMm10,365 chainMm10,398 chainMm10,403 chainMm10,425 chainMm10,437 chainMm10,444 chainMm10,501 chainMm10,673 chainMm10,688 chainMm10,702 chainMm10,771 chainMm10,792 chainMm10,807 chainMm10,867 chainMm10,898 chainMm10,993 chainNetMm10,202 chainNetMm10,215 chainNetMm10,226 chainNetMm10,329 chainNetMm10,368 chainNetMm10,401 chainNetMm10,406 chainNetMm10,428 chainNetMm10,440 chainNetMm10,447 chainNetMm10,504 chainNetMm10,676 chainNetMm10,691 chainNetMm10,705 chainNetMm10,774 chainNetMm10,795 chainNetMm10,810 chainNetMm10,870 chainNetMm10,901 chainNetMm10,996 netMm10,199 netMm10,212 netMm10,223 netMm10,326 netMm10,365 netMm10,398 netMm10,403 netMm10,425 netMm10,437 netMm10,444 netMm10,501 netMm10,673 netMm10,688 netMm10,702 netMm10,771 netMm10,792 netMm10,807 netMm10,867 netMm10,898 netMm10,993 change cpgIslandExt,210 cpgIslandExtUnmasked,213 cpgIslandSuper,210 mrna,74 refSeqComposite,913 refSeqComposite,927 xenoMrna,147 changed rmsk,285 characteristic mrna,279 xenoMrna,352 check chainMm10,348 chainNetMm10,351 netMm10,348 check-box refSeqComposite,737 chen ensGene,176 chiaromonte chainMm10,1038 chainNetMm10,1041 netMm10,1038 chicken augustusGene,204 augustusGene,262 choose augustusGene,171 cpgIslandExt,581 cpgIslandExtUnmasked,584 cpgIslandSuper,581 mrna,235 mrna,274 xenoMrna,308 xenoMrna,347 chosen mrna,297 refSeqComposite,542 xenoMrna,370 chr16 refSeqComposite,1563 chr4 chainMm10,380 chainNetMm10,383 netMm10,380 chris genscan,21 genscan,172 chrom refSeqComposite,1562 chromosome chainMm10,253 chainMm10,335 chainMm10,360 chainMm10,368 chainMm10,378 chainMm10,387 chainMm10,534 chainMm10,549 chainMm10,565 chainMm10,635 chainMm10,642 chainNetMm10,256 chainNetMm10,338 chainNetMm10,363 chainNetMm10,371 chainNetMm10,381 chainNetMm10,390 chainNetMm10,537 chainNetMm10,552 chainNetMm10,568 chainNetMm10,638 chainNetMm10,645 cytoBandIdeo,1 netMm10,253 netMm10,335 netMm10,360 netMm10,368 netMm10,378 netMm10,387 netMm10,534 netMm10,549 netMm10,565 netMm10,635 netMm10,642 ucscToINSDC,20 ucscToRefSeq,15 chromosome-based chainMm10,328 chainNetMm10,331 netMm10,328 circle rmsk,202 cited cpgIslandExt,374 cpgIslandExtUnmasked,377 cpgIslandSuper,374 clark ensGene,178 mrna,472 xenoMrna,545 class rmsk,199 rmsk,253 classes rmsk,150 classification rmsk,266 rmsk,282 clawson gc5BaseBw,83 ucscToINSDC,52 ucscToRefSeq,46 click chainMm10,461 chainMm10,475 chainNetMm10,464 chainNetMm10,478 gc5BaseBw,56 netMm10,461 netMm10,475 refSeqComposite,755 refSeqComposite,777 xenoRefGene,112 xenoRefGene,216 clinical refSeqComposite,589 clipped nestedRepeats,224 closest augustusGene,241 clusters refSeqComposite,413 cm refSeqComposite,1768 xenoRefGene,336 code refSeqComposite,1523 coding refSeqComposite,1088 simpleRepeat,38 xenoRefGene,214 codon genscan,100 genscan,122 mrna,335 mrna,360 refSeqComposite,724 refSeqComposite,818 refSeqComposite,825 refSeqComposite,840 refSeqComposite,870 xenoMrna,408 xenoMrna,433 xenoRefGene,140 xenoRefGene,147 xenoRefGene,162 xenoRefGene,192 codons genscan,89 genscan,93 refSeqComposite,845 refSeqComposite,852 xenoRefGene,167 xenoRefGene,174 collaboration ucscToINSDC,9 ucscToINSDC,31 collaborator refSeqComposite,651 collaborators refSeqComposite,695 collapsed nestedRepeats,173 collection refSeqComposite,33 xenoRefGene,35 color chainMm10,356 chainNetMm10,359 genscan,86 genscan,96 mrna,80 mrna,276 netMm10,356 refSeqComposite,611 refSeqComposite,634 refSeqComposite,849 rmsk,207 xenoMrna,153 xenoMrna,349 xenoRefGene,60 xenoRefGene,171 coloration gold,95 colored chainMm10,331 chainNetMm10,334 mrna,376 netMm10,331 xenoMrna,449 coloring chainMm10,347 chainNetMm10,350 genscan,116 mrna,336 mrna,363 netMm10,347 refSeqComposite,819 refSeqComposite,826 refSeqComposite,864 xenoMrna,409 xenoMrna,436 xenoRefGene,141 xenoRefGene,148 xenoRefGene,186 colors refSeqComposite,841 xenoRefGene,83 xenoRefGene,163 column nestedRepeats,107 refSeqComposite,1433 refSeqComposite,1444 combination mrna,238 xenoMrna,311 combinations xenoMrna,122 combined rmsk,232 command cpgIslandExt,409 cpgIslandExt,503 cpgIslandExtUnmasked,412 cpgIslandExtUnmasked,506 cpgIslandSuper,409 cpgIslandSuper,503 refSeqComposite,1554 refSeqComposite,1618 common cpgIslandExt,30 cpgIslandExtUnmasked,33 cpgIslandSuper,30 comparative chainMm10,10 chainNetMm10,13 chainNetMm10Viewchain,11 chainNetMm10Viewnet,11 netMm10,10 compare mrna,345 refSeqComposite,835 xenoMrna,418 xenoRefGene,157 comparison genscan,109 compiled refSeqComposite,1519 complete genscan,213 completely refSeqComposite,817 xenoRefGene,139 complex chainMm10,167 chainNetMm10,170 netMm10,167 complexity nestedRepeats,40 rmsk,30 rmsk,182 components gold,138 composite refSeqComposite,16 refSeqComposite,150 compositional genscan,41 computational genscan,196 concerning refSeqComposite,127 conditional augustusGene,118 configuration chainMm10,320 chainNetMm10,323 gc5BaseBw,60 gc5BaseBw,69 genscan,64 genscan,84 mrna,33 nestedRepeats,114 netMm10,320 refSeqComposite,145 rmsk,138 xenoMrna,36 xenoRefGene,48 configured gc5BaseBw,42 mrna,332 refSeqComposite,734 xenoMrna,405 xenoRefGene,91 constructed cpgIslandExt,322 cpgIslandExt,495 cpgIslandExtUnmasked,325 cpgIslandExtUnmasked,498 cpgIslandSuper,322 cpgIslandSuper,495 refSeqComposite,1222 construction cpgIslandExt,311 cpgIslandExtUnmasked,314 cpgIslandSuper,311 consult mrna,169 xenoMrna,242 contained chainMm10,899 chainNetMm10,902 netMm10,899 refSeqComposite,1146 containing refSeqComposite,1663 contains blastHg18KG,16 gap,82 mrna,194 refSeqComposite,153 refSeqComposite,876 xenoMrna,267 xenoRefGene,144 content augustusGene,71 cpgIslandExt,263 cpgIslandExtUnmasked,266 cpgIslandSuper,263 gc5BaseBw,31 context gap,113 contig gap,115 gold,83 gold,152 contigs gap,49 gap,96 gap,130 gold,37 gold,40 gold,58 gold,75 gold,100 gold,117 controls cpgIslandExt,217 cpgIslandExtUnmasked,220 cpgIslandSuper,217 refSeqComposite,738 xenoRefGene,94 conventions chainMm10,318 chainNetMm10,321 genscan,62 genscan,70 mrna,31 mrna,39 nestedRepeats,112 netMm10,318 refSeqComposite,143 refSeqComposite,455 refSeqComposite,605 rmsk,136 xenoMrna,34 xenoMrna,42 xenoRefGene,46 xenoRefGene,54 converted chainMm10,612 chainNetMm10,615 netMm10,612 refSeqComposite,1178 refSeqComposite,1593 coordinates refSeqComposite,38 refSeqComposite,69 copies microsat,80 corrections refSeqComposite,122 corresponds mrna,177 xenoMrna,250 could refSeqComposite,973 refSeqComposite,1550 count cpgIslandExt,334 cpgIslandExt,357 cpgIslandExtUnmasked,337 cpgIslandExtUnmasked,360 cpgIslandSuper,334 cpgIslandSuper,357 covered chainMm10,822 chainNetMm10,825 netMm10,822 cox ensGene,180 cpg cpgIslandExt,1 cpgIslandExt,3 cpgIslandExt,15 cpgIslandExt,26 cpgIslandExt,55 cpgIslandExt,147 cpgIslandExt,176 cpgIslandExt,225 cpgIslandExt,316 cpgIslandExt,319 cpgIslandExt,333 cpgIslandExt,346 cpgIslandExt,351 cpgIslandExt,356 cpgIslandExt,367 cpgIslandExt,382 cpgIslandExt,385 cpgIslandExt,506 cpgIslandExt,608 cpgIslandExtUnmasked,2 cpgIslandExtUnmasked,3 cpgIslandExtUnmasked,18 cpgIslandExtUnmasked,29 cpgIslandExtUnmasked,58 cpgIslandExtUnmasked,150 cpgIslandExtUnmasked,179 cpgIslandExtUnmasked,228 cpgIslandExtUnmasked,319 cpgIslandExtUnmasked,322 cpgIslandExtUnmasked,336 cpgIslandExtUnmasked,349 cpgIslandExtUnmasked,354 cpgIslandExtUnmasked,359 cpgIslandExtUnmasked,370 cpgIslandExtUnmasked,385 cpgIslandExtUnmasked,388 cpgIslandExtUnmasked,509 cpgIslandExtUnmasked,611 cpgIslandSuper,1 cpgIslandSuper,3 cpgIslandSuper,15 cpgIslandSuper,26 cpgIslandSuper,55 cpgIslandSuper,147 cpgIslandSuper,176 cpgIslandSuper,225 cpgIslandSuper,316 cpgIslandSuper,319 cpgIslandSuper,333 cpgIslandSuper,346 cpgIslandSuper,351 cpgIslandSuper,356 cpgIslandSuper,367 cpgIslandSuper,382 cpgIslandSuper,385 cpgIslandSuper,506 cpgIslandSuper,608 cpg_lh cpgIslandExt,418 cpgIslandExt,558 cpgIslandExt,568 cpgIslandExt,580 cpgIslandExtUnmasked,421 cpgIslandExtUnmasked,561 cpgIslandExtUnmasked,571 cpgIslandExtUnmasked,583 cpgIslandSuper,418 cpgIslandSuper,558 cpgIslandSuper,568 cpgIslandSuper,580 cpg_lh.err cpgIslandExt,423 cpgIslandExtUnmasked,426 cpgIslandSuper,423 cpgisland.bed cpgIslandExt,489 cpgIslandExtUnmasked,492 cpgIslandSuper,489 cpgislandext cpgIslandExt,566 cpgIslandExtUnmasked,569 cpgIslandSuper,566 cpgs cpgIslandExt,115 cpgIslandExt,152 cpgIslandExtUnmasked,118 cpgIslandExtUnmasked,155 cpgIslandSuper,115 cpgIslandSuper,152 create refSeqComposite,311 created chainMm10,997 chainNetMm10,1000 microsat,89 netMm10,997 refSeqComposite,103 refSeqComposite,1157 rmsk,13 creates chainMm10,647 chainNetMm10,650 netMm10,647 credits augustusGene,247 blastHg18KG,141 chainMm10,923 chainNetMm10,926 cpgIslandExt,584 cpgIslandExtUnmasked,587 cpgIslandSuper,584 ensGene,145 gc5BaseBw,71 genscan,169 microsat,104 mrna,445 nestedRepeats,302 netMm10,923 refSeqComposite,1716 rmsk,325 simpleRepeat,66 ucscToINSDC,42 ucscToRefSeq,36 xenoMrna,518 xenoRefGene,283 criteria cpgIslandExt,261 cpgIslandExtUnmasked,264 cpgIslandSuper,261 mrna,252 mrna,270 mrna,308 mrna,326 xenoMrna,325 xenoMrna,343 xenoMrna,381 xenoMrna,399 cruz chainMm10,973 chainMm10,1018 chainNetMm10,976 chainNetMm10,1021 netMm10,973 netMm10,1018 cs cpgIslandExt,63 cpgIslandExt,101 cpgIslandExt,296 cpgIslandExtUnmasked,66 cpgIslandExtUnmasked,104 cpgIslandExtUnmasked,299 cpgIslandSuper,63 cpgIslandSuper,101 cpgIslandSuper,296 cuff ensGene,182 culex augustusGene,220 curated ncbiRefSeq,6 ncbiRefSeqCurated,2 ncbiRefSeqCurated,6 refSeqComposite,89 refSeqComposite,203 refSeqComposite,211 refSeqComposite,252 refSeqComposite,316 refSeqComposite,401 refSeqComposite,423 refSeqComposite,474 refSeqComposite,527 refSeqComposite,560 refSeqComposite,595 refSeqComposite,1418 refSeqComposite,1678 refSeqComposite,1730 refSeqComposite,1808 xenoRefGene,299 xenoRefGene,376 curator rmsk,261 curr nestedRepeats,384 nestedRepeats,406 rmsk,407 rmsk,429 current mrna,112 nestedRepeats,250 xenoMrna,185 currently gold,80 refSeqComposite,478 curwen ensGene,184 cutoff refSeqComposite,946 cytosine cpgIslandExt,45 cpgIslandExtUnmasked,48 cpgIslandSuper,45 gc5BaseBw,24 d augustusGene,293 chainMm10,1065 chainMm10,1109 chainNetMm10,1068 chainNetMm10,1112 cpgIslandExt,438 cpgIslandExtUnmasked,441 cpgIslandSuper,438 ensGene,171 genscan,192 netMm10,1065 netMm10,1109 d23-6 mrna,517 xenoMrna,590 d36-42 mrna,491 xenoMrna,564 d501-4 refSeqComposite,1826 xenoRefGene,394 d756-63 refSeqComposite,1792 xenoRefGene,360 da mrna,469 mrna,497 xenoMrna,542 xenoMrna,570 dark refSeqComposite,629 xenoRefGene,77 darkly mrna,53 xenoMrna,56 data cpgIslandExt,403 cpgIslandExt,493 cpgIslandExt,504 cpgIslandExt,525 cpgIslandExtUnmasked,406 cpgIslandExtUnmasked,496 cpgIslandExtUnmasked,507 cpgIslandExtUnmasked,528 cpgIslandSuper,403 cpgIslandSuper,493 cpgIslandSuper,504 cpgIslandSuper,525 ensGene,55 ensGene,59 ensGene,70 ensGene,102 gap,61 gap,152 gc5BaseBw,73 microsat,47 mrna,456 nestedRepeats,263 nestedRepeats,280 refSeqComposite,155 refSeqComposite,660 refSeqComposite,1161 refSeqComposite,1167 refSeqComposite,1295 refSeqComposite,1299 refSeqComposite,1321 refSeqComposite,1373 refSeqComposite,1658 refSeqComposite,1724 rmsk,126 rmsk,287 ucscToINSDC,34 ucscToINSDC,44 ucscToRefSeq,28 ucscToRefSeq,38 xenoMrna,529 xenoRefGene,38 xenoRefGene,293 database chainMm10,989 chainNetMm10,992 ensGene,193 mrna,489 mrna,515 nestedRepeats,345 netMm10,989 refSeqComposite,568 refSeqComposite,1408 refSeqComposite,1790 refSeqComposite,1811 refSeqComposite,1824 rmsk,125 rmsk,368 ucscToINSDC,8 ucscToINSDC,30 ucscToINSDC,41 ucscToRefSeq,25 ucscToRefSeq,35 xenoMrna,562 xenoMrna,588 xenoRefGene,358 xenoRefGene,379 xenoRefGene,392 databases mrna,463 refSeqComposite,280 refSeqComposite,427 xenoMrna,536 dataset refSeqComposite,536 david chainMm10,983 chainNetMm10,986 netMm10,983 de augustusGene,303 deamination cpgIslandExt,110 cpgIslandExtUnmasked,113 cpgIslandSuper,110 dec chainMm10,4 chainMm10,66 chainMm10,312 chainNetMm10,5 chainNetMm10,69 chainNetMm10,315 chainNetMm10Viewchain,3 chainNetMm10Viewnet,3 nestedRepeats,389 nestedRepeats,411 netMm10,4 netMm10,66 netMm10,312 rmsk,412 rmsk,434 default chainMm10,324 chainNetMm10,327 cpgIslandExt,195 cpgIslandExtUnmasked,198 cpgIslandSuper,195 netMm10,324 refSeqComposite,770 refSeqComposite,1044 refSeqComposite,1071 xenoRefGene,105 xenoRefGene,198 defined refSeqComposite,631 deletion chainMm10,149 chainMm10,1070 chainNetMm10,152 chainNetMm10,1073 mrna,385 netMm10,149 netMm10,1070 refSeqComposite,954 refSeqComposite,1050 refSeqComposite,1077 rmsk,220 xenoMrna,458 deletions chainMm10,117 chainMm10,182 chainNetMm10,120 chainNetMm10,185 netMm10,117 netMm10,182 dense gold,69 mrna,45 nestedRepeats,157 nestedRepeats,168 xenoMrna,48 dependencies genscan,183 depicts gap,10 gold,73 derived chainMm10,773 chainNetMm10,776 netMm10,773 described chainMm10,780 chainNetMm10,783 genscan,161 nestedRepeats,60 nestedRepeats,338 netMm10,780 refSeqComposite,1647 rmsk,96 rmsk,361 describes augustusGene,226 describing refSeqComposite,256 description augustusGene,12 blastHg18KG,13 chainMm10,12 chainMm10,785 chainNetMm10,15 chainNetMm10,788 cpgIslandExt,14 cpgIslandExtUnmasked,17 cpgIslandSuper,14 ensGene,9 ensGene,32 gap,7 gc5BaseBw,11 genscan,10 genscan,77 genscan,133 gold,8 microsat,10 mrna,14 mrna,61 nestedRepeats,14 netMm10,12 netMm10,785 refSeqComposite,11 refSeqComposite,745 rmsk,9 simpleRepeat,11 ucscToINSDC,13 ucscToRefSeq,8 xenoMrna,12 xenoMrna,134 xenoRefGene,12 xenoRefGene,101 descriptions augustusGene,91 designed refSeqComposite,1446 desired mrna,237 xenoMrna,310 detail genscan,164 detailed augustusGene,90 chainMm10,467 chainMm10,486 chainNetMm10,470 chainNetMm10,489 nestedRepeats,70 netMm10,467 netMm10,486 rmsk,37 details refSeqComposite,96 refSeqComposite,1130 rmsk,119 determining chainMm10,491 chainNetMm10,494 netMm10,491 dev cpgIslandExt,419 cpgIslandExtUnmasked,422 cpgIslandSuper,419 nestedRepeats,387 nestedRepeats,409 rmsk,410 rmsk,432 developed chainMm10,930 chainMm10,965 chainMm10,1011 chainNetMm10,933 chainNetMm10,968 chainNetMm10,1014 cpgIslandExt,595 cpgIslandExtUnmasked,598 cpgIslandSuper,595 netMm10,930 netMm10,965 netMm10,1011 dfam rmsk,112 di-nucleotide microsat,3 microsat,32 diagnostics refSeqComposite,590 diekhans augustusGene,288 differ refSeqComposite,289 differences refSeqComposite,65 refSeqComposite,463 refSeqComposite,896 refSeqComposite,965 different augustusGene,39 augustusGene,85 augustusGene,96 augustusGene,144 augustusGene,155 augustusGene,179 augustusGene,193 chainMm10,566 chainNetMm10,569 ensGene,22 gc5BaseBw,50 genscan,54 netMm10,566 refSeqComposite,100 refSeqComposite,135 refSeqComposite,878 rmsk,149 xenoMrna,115 differing refSeqComposite,154 diffs refSeqComposite,460 refSeqComposite,874 refSeqComposite,1204 refSeqComposite,1380 dinucleotide cpgIslandExt,240 cpgIslandExtUnmasked,243 cpgIslandSuper,240 dinucleotides cpgIslandExt,282 cpgIslandExt,340 cpgIslandExtUnmasked,285 cpgIslandExtUnmasked,343 cpgIslandSuper,282 cpgIslandSuper,340 directly cpgIslandExt,534 cpgIslandExtUnmasked,537 cpgIslandSuper,534 ensGene,111 directory ensGene,86 ensGene,94 refSeqComposite,1536 refSeqComposite,1585 refSeqComposite,1605 rmsk,134 discarded chainMm10,699 chainNetMm10,702 netMm10,699 refSeqComposite,1253 xenoRefGene,241 discover blastHg18KG,57 discussion nestedRepeats,364 rmsk,387 diseases simpleRepeat,54 display chainMm10,245 chainMm10,317 chainMm10,362 chainMm10,392 chainMm10,451 chainMm10,480 chainMm10,509 chainMm10,987 chainNetMm10,248 chainNetMm10,320 chainNetMm10,365 chainNetMm10,395 chainNetMm10,454 chainNetMm10,483 chainNetMm10,512 chainNetMm10,990 genscan,61 genscan,69 genscan,104 gold,132 mrna,30 mrna,38 mrna,46 mrna,76 mrna,103 mrna,133 mrna,278 mrna,302 mrna,318 mrna,334 mrna,386 nestedRepeats,111 netMm10,245 netMm10,317 netMm10,362 netMm10,392 netMm10,451 netMm10,480 netMm10,509 netMm10,987 refSeqComposite,142 refSeqComposite,454 refSeqComposite,604 refSeqComposite,725 refSeqComposite,783 refSeqComposite,839 refSeqComposite,1187 refSeqComposite,1452 rmsk,135 rmsk,141 rmsk,212 xenoMrna,33 xenoMrna,41 xenoMrna,49 xenoMrna,149 xenoMrna,176 xenoMrna,206 xenoMrna,351 xenoMrna,375 xenoMrna,391 xenoMrna,407 xenoMrna,459 xenoRefGene,45 xenoRefGene,53 xenoRefGene,82 xenoRefGene,118 xenoRefGene,161 displayed chainMm10,428 chainMm10,525 chainMm10,704 chainNetMm10,431 chainNetMm10,528 chainNetMm10,707 cpgIslandExt,204 cpgIslandExtUnmasked,207 cpgIslandSuper,204 gc5BaseBw,54 nestedRepeats,124 nestedRepeats,217 netMm10,428 netMm10,525 netMm10,704 refSeqComposite,1123 xenoRefGene,206 displays chainMm10,124 chainNetMm10,127 cpgIslandExt,174 cpgIslandExtUnmasked,177 cpgIslandSuper,174 microsat,13 netMm10,124 rmsk,145 simpleRepeat,14 xenoMrna,15 dissertation augustusGene,105 distinguish cpgIslandExt,75 cpgIslandExtUnmasked,78 cpgIslandSuper,75 distinguished gold,86 distributions augustusGene,83 genscan,42 diverged chainMm10,922 chainNetMm10,925 nestedRepeats,212 netMm10,922 dj blastHg18KG,166 mrna,477 mrna,501 xenoMrna,550 xenoMrna,574 dl mrna,505 xenoMrna,578 dna chainMm10,1031 chainNetMm10,1034 cpgIslandExt,60 cpgIslandExt,79 cpgIslandExt,92 cpgIslandExtUnmasked,63 cpgIslandExtUnmasked,82 cpgIslandExtUnmasked,95 cpgIslandSuper,60 cpgIslandSuper,79 cpgIslandSuper,92 genscan,219 microsat,123 nestedRepeats,33 nestedRepeats,41 netMm10,1031 refSeqComposite,1089 rmsk,23 rmsk,31 rmsk,174 rmsk,177 rmsk,257 simpleRepeat,83 xenoMrna,112 do cpgIslandExt,140 cpgIslandExtUnmasked,143 cpgIslandSuper,140 refSeqComposite,391 doc rmsk,132 dollar cpgIslandExt,425 cpgIslandExt,427 cpgIslandExt,431 cpgIslandExt,433 cpgIslandExt,457 cpgIslandExt,459 cpgIslandExt,461 cpgIslandExt,463 cpgIslandExt,465 cpgIslandExt,468 cpgIslandExt,471 cpgIslandExt,476 cpgIslandExt,479 cpgIslandExt,481 cpgIslandExtUnmasked,428 cpgIslandExtUnmasked,430 cpgIslandExtUnmasked,434 cpgIslandExtUnmasked,436 cpgIslandExtUnmasked,460 cpgIslandExtUnmasked,462 cpgIslandExtUnmasked,464 cpgIslandExtUnmasked,466 cpgIslandExtUnmasked,468 cpgIslandExtUnmasked,471 cpgIslandExtUnmasked,474 cpgIslandExtUnmasked,479 cpgIslandExtUnmasked,482 cpgIslandExtUnmasked,484 cpgIslandSuper,425 cpgIslandSuper,427 cpgIslandSuper,431 cpgIslandSuper,433 cpgIslandSuper,457 cpgIslandSuper,459 cpgIslandSuper,461 cpgIslandSuper,463 cpgIslandSuper,465 cpgIslandSuper,468 cpgIslandSuper,471 cpgIslandSuper,476 cpgIslandSuper,479 cpgIslandSuper,481 done augustusGene,265 augustusGene,281 donor genscan,31 double chainMm10,132 chainMm10,163 chainNetMm10,135 chainNetMm10,166 netMm10,132 netMm10,163 refSeqComposite,1024 double-lined chainMm10,225 chainNetMm10,228 netMm10,225 double-sided chainMm10,106 chainNetMm10,109 netMm10,106 down ensGene,186 download ensGene,93 ensGene,143 refSeqComposite,1571 refSeqComposite,1714 downloaded refSeqComposite,1170 refSeqComposite,1336 refSeqComposite,1525 ucscToINSDC,36 ucscToRefSeq,30 downloads ensGene,74 ensGene,85 refSeqComposite,1339 refSeqComposite,1355 refSeqComposite,1494 refSeqComposite,1584 refSeqComposite,1609 refSeqComposite,1688 rmsk,76 downstream refSeqComposite,1463 dr refSeqComposite,1802 xenoRefGene,370 draft gap,14 gold,13 drawn gap,72 gold,128 drosophila augustusGene,213 due chainMm10,146 chainMm10,218 chainMm10,230 chainNetMm10,149 chainNetMm10,221 chainNetMm10,233 netMm10,146 netMm10,218 netMm10,230 refSeqComposite,983 duplication chainMm10,1069 chainNetMm10,1072 cpgIslandExt,95 cpgIslandExtUnmasked,98 cpgIslandSuper,95 netMm10,1069 during chainMm10,827 chainNetMm10,830 gap,134 netMm10,827 dynamic chainMm10,660 chainNetMm10,663 netMm10,660 e ensGene,173 e.g chainMm10,379 chainNetMm10,382 netMm10,379 refSeqComposite,1140 each blastHg18KG,68 chainMm10,263 chainNetMm10,266 cpgIslandExt,239 cpgIslandExt,253 cpgIslandExtUnmasked,242 cpgIslandExtUnmasked,256 cpgIslandSuper,239 cpgIslandSuper,253 genscan,99 mrna,166 nestedRepeats,120 netMm10,263 refSeqComposite,546 refSeqComposite,1435 xenoMrna,239 editors genscan,195 either chainMm10,129 chainNetMm10,132 gap,51 netMm10,129 rmsk,273 electronic nestedRepeats,348 rmsk,371 element rmsk,228 elements nestedRepeats,352 nestedRepeats,380 rmsk,3 rmsk,156 rmsk,164 rmsk,169 rmsk,176 rmsk,375 rmsk,403 elsevier genscan,202 emerged chainMm10,833 chainNetMm10,836 netMm10,833 end refSeqComposite,1058 refSeqComposite,1566 rmsk,245 enough refSeqComposite,1032 ensembl ensGene,1 ensGene,3 ensGene,16 ensGene,38 ensGene,57 ensGene,151 ensGene,162 ensGene,191 ensgene.txt.gz ensGene,88 enter chainMm10,373 chainNetMm10,376 netMm10,373 entered mrna,203 mrna,213 xenoMrna,276 xenoMrna,286 entire cpgIslandExt,301 cpgIslandExtUnmasked,304 cpgIslandSuper,301 entries refSeqComposite,1364 ermolaeva refSeqComposite,1765 xenoRefGene,333 errors refSeqComposite,957 especially mrna,104 xenoMrna,177 est mrna,13 refSeqComposite,265 refSeqComposite,365 xenoMrna,11 established refSeqComposite,692 et cpgIslandExt,377 cpgIslandExtUnmasked,380 cpgIslandSuper,377 ensGene,45 ensGene,188 refSeqComposite,1775 xenoRefGene,343 evaluated cpgIslandExt,257 cpgIslandExtUnmasked,260 cpgIslandSuper,257 every chainMm10,280 chainNetMm10,283 netMm10,280 refSeqComposite,481 evidence gold,67 refSeqComposite,262 refSeqComposite,277 evolution chainMm10,1066 chainNetMm10,1069 netMm10,1066 evolutionary cpgIslandExt,98 cpgIslandExtUnmasked,101 cpgIslandSuper,98 ew blastHg18KG,164 mrna,481 xenoMrna,554 example mrna,135 mrna,188 refSeqComposite,1540 rmsk,256 xenoMrna,208 xenoMrna,261 examples refSeqComposite,407 except refSeqComposite,42 exclude mrna,83 mrna,288 mrna,294 xenoMrna,156 xenoMrna,361 xenoMrna,367 exe cpgIslandExt,578 cpgIslandExtUnmasked,581 cpgIslandSuper,578 exist chainMm10,412 chainNetMm10,415 cpgIslandExt,179 cpgIslandExtUnmasked,182 cpgIslandSuper,179 gold,98 netMm10,412 refSeqComposite,294 exists refSeqComposite,331 exon augustusGene,86 blastHg18KG,58 blastHg18KG,69 blastHg18KG,105 blastHg18KG,118 exons blastHg18KG,88 chainMm10,48 chainNetMm10,51 genscan,44 netMm10,48 exp cpgIslandExt,381 cpgIslandExtUnmasked,384 cpgIslandSuper,381 expanded refSeqComposite,669 expansions simpleRepeat,48 expected cpgIslandExt,285 cpgIslandExt,366 cpgIslandExtUnmasked,288 cpgIslandExtUnmasked,369 cpgIslandSuper,285 cpgIslandSuper,366 explanation gc5BaseBw,66 explored cpgIslandExt,514 cpgIslandExtUnmasked,517 cpgIslandSuper,514 ensGene,62 refSeqComposite,1312 expressed mrna,143 xenoMrna,216 expression cpgIslandExt,11 cpgIslandExt,146 cpgIslandExtUnmasked,14 cpgIslandExtUnmasked,149 cpgIslandSuper,11 cpgIslandSuper,146 extend rmsk,308 extended blastHg18KG,121 extending blastHg18KG,107 extract refSeqComposite,1542 extracted nestedRepeats,23 f chainMm10,1039 chainNetMm10,1042 netMm10,1039 refSeqComposite,1762 xenoRefGene,330 facilitate genscan,106 factor mrna,180 xenoMrna,253 family rmsk,249 faq augustusGene,45 ensGene,28 genscan,60 nestedRepeats,298 refSeqComposite,141 rmsk,321 farrell refSeqComposite,1767 xenoRefGene,335 fasta refSeqComposite,1668 feature chainMm10,249 chainNetMm10,252 genscan,129 mrna,338 netMm10,249 refSeqComposite,827 refSeqComposite,860 xenoMrna,411 xenoRefGene,149 xenoRefGene,182 features refSeqComposite,728 xenoRefGene,85 fed chainMm10,624 chainNetMm10,627 netMm10,624 feedback refSeqComposite,108 field augustusGene,120 file cpgIslandExt,583 cpgIslandExtUnmasked,586 cpgIslandSuper,583 refSeqComposite,1175 refSeqComposite,1386 refSeqComposite,1397 refSeqComposite,1662 files ensGene,78 refSeqComposite,1168 refSeqComposite,1487 fill chainMm10,857 chainMm10,890 chainNetMm10,860 chainNetMm10,893 netMm10,857 netMm10,890 filled chainMm10,421 chainMm10,440 chainMm10,839 chainMm10,912 chainNetMm10,424 chainNetMm10,443 chainNetMm10,842 chainNetMm10,915 netMm10,421 netMm10,440 netMm10,839 netMm10,912 filter chainMm10,385 chainNetMm10,388 genscan,82 mrna,68 mrna,117 mrna,130 mrna,139 mrna,186 mrna,227 mrna,251 mrna,269 mrna,307 mrna,325 netMm10,385 xenoMrna,141 xenoMrna,190 xenoMrna,203 xenoMrna,212 xenoMrna,259 xenoMrna,300 xenoMrna,324 xenoMrna,342 xenoMrna,380 xenoMrna,398 filtered mrna,290 xenoMrna,363 filtering mrna,229 xenoMrna,302 final cpgIslandExt,89 cpgIslandExtUnmasked,92 cpgIslandSuper,89 finally blastHg18KG,82 find chainMm10,669 chainNetMm10,672 netMm10,669 rmsk,117 finder microsat,94 microsat,107 microsat,118 simpleRepeat,25 simpleRepeat,78 finding augustusGene,306 chainMm10,292 chainNetMm10,295 netMm10,292 first blastHg18KG,36 chainMm10,797 chainNetMm10,800 netMm10,797 refSeqComposite,1432 xenoMrna,74 fish augustusGene,201 fit chainMm10,817 chainNetMm10,820 nestedRepeats,175 netMm10,817 refSeqComposite,393 five refSeqComposite,877 refSeqComposite,893 flag nestedRepeats,287 rmsk,294 flags nestedRepeats,289 rmsk,296 fly augustusGene,214 follow refSeqComposite,602 followed cpgIslandExt,47 cpgIslandExtUnmasked,50 cpgIslandSuper,47 following chainMm10,678 chainNetMm10,681 cpgIslandExt,260 cpgIslandExt,408 cpgIslandExtUnmasked,263 cpgIslandExtUnmasked,411 cpgIslandSuper,260 cpgIslandSuper,408 gap,84 genscan,81 netMm10,678 refSeqComposite,452 refSeqComposite,1553 follows genscan,67 mrna,36 refSeqComposite,899 refSeqComposite,1411 xenoMrna,39 xenoRefGene,51 for augustusGene,34 augustusGene,52 augustusGene,68 augustusGene,80 augustusGene,175 augustusGene,184 augustusGene,192 augustusGene,232 augustusGene,253 augustusGene,260 augustusGene,274 blastHg18KG,151 chainMm10,262 chainMm10,279 chainMm10,291 chainMm10,298 chainMm10,498 chainNetMm10,265 chainNetMm10,282 chainNetMm10,294 chainNetMm10,301 chainNetMm10,501 cpgIslandExt,133 cpgIslandExt,162 cpgIslandExt,242 cpgIslandExt,246 cpgIslandExt,258 cpgIslandExt,309 cpgIslandExt,500 cpgIslandExt,556 cpgIslandExtUnmasked,136 cpgIslandExtUnmasked,165 cpgIslandExtUnmasked,245 cpgIslandExtUnmasked,249 cpgIslandExtUnmasked,261 cpgIslandExtUnmasked,312 cpgIslandExtUnmasked,503 cpgIslandExtUnmasked,559 cpgIslandSuper,133 cpgIslandSuper,162 cpgIslandSuper,242 cpgIslandSuper,246 cpgIslandSuper,258 cpgIslandSuper,309 cpgIslandSuper,500 cpgIslandSuper,556 cytoBandIdeo,5 ensGene,17 ensGene,30 ensGene,72 ensGene,79 ensGene,98 ensGene,152 ensGene,157 gc5BaseBw,64 genscan,49 genscan,71 genscan,124 genscan,131 genscan,174 microsat,95 mrna,40 mrna,63 mrna,134 mrna,165 mrna,187 mrna,351 mrna,364 mrna,377 nestedRepeats,35 nestedRepeats,239 nestedRepeats,293 nestedRepeats,299 nestedRepeats,311 nestedRepeats,362 netMm10,262 netMm10,279 netMm10,291 netMm10,298 netMm10,498 refSeqComposite,43 refSeqComposite,75 refSeqComposite,94 refSeqComposite,109 refSeqComposite,125 refSeqComposite,130 refSeqComposite,237 refSeqComposite,246 refSeqComposite,332 refSeqComposite,396 refSeqComposite,456 refSeqComposite,480 refSeqComposite,545 refSeqComposite,606 refSeqComposite,727 refSeqComposite,751 refSeqComposite,855 refSeqComposite,1186 refSeqComposite,1300 refSeqComposite,1341 refSeqComposite,1451 refSeqComposite,1530 refSeqComposite,1539 refSeqComposite,1670 refSeqComposite,1698 rmsk,25 rmsk,120 rmsk,255 rmsk,300 rmsk,322 rmsk,334 rmsk,385 simpleRepeat,30 simpleRepeat,56 ucscToINSDC,45 ucscToRefSeq,39 xenoMrna,43 xenoMrna,66 xenoMrna,136 xenoMrna,207 xenoMrna,238 xenoMrna,260 xenoMrna,424 xenoMrna,437 xenoMrna,450 xenoRefGene,21 xenoRefGene,55 xenoRefGene,177 format chainMm10,615 chainNetMm10,618 ensGene,77 ensGene,97 netMm10,615 refSeqComposite,1176 refSeqComposite,1367 refSeqComposite,1387 refSeqComposite,1413 refSeqComposite,1427 refSeqComposite,1574 refSeqComposite,1588 refSeqComposite,1596 refSeqComposite,1669 formats refSeqComposite,1185 formula cpgIslandExt,373 cpgIslandExtUnmasked,376 cpgIslandSuper,373 forth chainMm10,447 chainNetMm10,450 netMm10,447 found augustusGene,100 ensGene,139 mrna,420 refSeqComposite,1200 refSeqComposite,1400 refSeqComposite,1685 refSeqComposite,1710 xenoMrna,492 four chainMm10,515 chainNetMm10,518 netMm10,515 xenoMrna,121 fragment gap,89 gap,143 gold,144 fragments gold,4 nestedRepeats,3 nestedRepeats,19 nestedRepeats,82 nestedRepeats,101 nestedRepeats,127 nestedRepeats,139 nestedRepeats,191 nestedRepeats,205 nestedRepeats,208 from augustusGene,19 blastHg18KG,22 blastHg18KG,40 chainMm10,179 chainMm10,310 chainMm10,567 chainMm10,591 chainMm10,774 chainMm10,947 chainMm10,979 chainNetMm10,182 chainNetMm10,313 chainNetMm10,570 chainNetMm10,594 chainNetMm10,777 chainNetMm10,950 chainNetMm10,982 cpgIslandExt,81 cpgIslandExt,496 cpgIslandExt,535 cpgIslandExt,563 cpgIslandExt,574 cpgIslandExtUnmasked,84 cpgIslandExtUnmasked,499 cpgIslandExtUnmasked,538 cpgIslandExtUnmasked,566 cpgIslandExtUnmasked,577 cpgIslandSuper,81 cpgIslandSuper,496 cpgIslandSuper,535 cpgIslandSuper,563 cpgIslandSuper,574 ensGene,106 ensGene,112 gap,149 genscan,15 gold,3 mrna,9 mrna,453 nestedRepeats,24 nestedRepeats,50 nestedRepeats,72 netMm10,179 netMm10,310 netMm10,567 netMm10,591 netMm10,774 netMm10,947 netMm10,979 refSeqComposite,5 refSeqComposite,27 refSeqComposite,290 refSeqComposite,296 refSeqComposite,424 refSeqComposite,488 refSeqComposite,847 refSeqComposite,1107 refSeqComposite,1162 refSeqComposite,1171 refSeqComposite,1337 refSeqComposite,1492 refSeqComposite,1520 refSeqComposite,1533 refSeqComposite,1581 refSeqComposite,1602 refSeqComposite,1616 refSeqComposite,1723 rmsk,86 ucscToINSDC,25 ucscToINSDC,37 ucscToRefSeq,20 ucscToRefSeq,31 xenoMrna,7 xenoMrna,26 xenoMrna,526 xenoRefGene,29 xenoRefGene,169 xenoRefGene,290 frommer cpgIslandExt,606 cpgIslandExtUnmasked,609 cpgIslandSuper,606 full chainMm10,243 chainMm10,391 chainNetMm10,246 chainNetMm10,394 nestedRepeats,118 netMm10,243 netMm10,391 rmsk,140 full-length refSeqComposite,267 furthermore augustusGene,64 future rmsk,272 g cpgIslandExt,51 cpgIslandExt,392 cpgIslandExt,597 cpgIslandExtUnmasked,54 cpgIslandExtUnmasked,395 cpgIslandExtUnmasked,600 cpgIslandSuper,51 cpgIslandSuper,392 cpgIslandSuper,597 ensGene,175 gc5BaseBw,20 microsat,115 refSeqComposite,908 refSeqComposite,960 refSeqComposite,1084 simpleRepeat,75 g-31-125100-114 chainMm10,686 chainNetMm10,689 netMm10,686 gambiae augustusGene,219 gap blastHg18KG,96 blastHg18KG,100 chainMm10,78 chainMm10,88 chainMm10,191 chainMm10,484 chainMm10,496 chainMm10,519 chainMm10,537 chainMm10,552 chainMm10,569 chainMm10,710 chainMm10,841 chainNetMm10,81 chainNetMm10,91 chainNetMm10,194 chainNetMm10,487 chainNetMm10,499 chainNetMm10,522 chainNetMm10,540 chainNetMm10,555 chainNetMm10,572 chainNetMm10,713 chainNetMm10,844 gap,1 gap,2 gap,55 gap,66 gap,79 gap,144 gold,55 mrna,372 netMm10,78 netMm10,88 netMm10,191 netMm10,484 netMm10,496 netMm10,519 netMm10,537 netMm10,552 netMm10,569 netMm10,710 netMm10,841 refSeqComposite,934 refSeqComposite,967 refSeqComposite,1023 refSeqComposite,1025 xenoMrna,445 gapless chainMm10,653 chainNetMm10,656 netMm10,653 gaps chainMm10,84 chainMm10,95 chainMm10,108 chainMm10,142 chainMm10,168 chainMm10,215 chainMm10,226 chainMm10,411 chainMm10,433 chainMm10,460 chainMm10,896 chainMm10,902 chainNetMm10,87 chainNetMm10,98 chainNetMm10,111 chainNetMm10,145 chainNetMm10,171 chainNetMm10,218 chainNetMm10,229 chainNetMm10,414 chainNetMm10,436 chainNetMm10,463 chainNetMm10,899 chainNetMm10,905 gap,11 gap,32 gap,88 gap,90 gold,97 netMm10,84 netMm10,95 netMm10,108 netMm10,142 netMm10,168 netMm10,215 netMm10,226 netMm10,411 netMm10,433 netMm10,460 netMm10,896 netMm10,902 refSeqComposite,937 refSeqComposite,1028 gardiner-garden cpgIslandExt,376 cpgIslandExt,604 cpgIslandExtUnmasked,379 cpgIslandExtUnmasked,607 cpgIslandSuper,376 cpgIslandSuper,604 gary microsat,111 simpleRepeat,71 gbdb refSeqComposite,1558 gc cpgIslandExt,262 cpgIslandExtUnmasked,265 cpgIslandSuper,262 gc5BaseBw,1 gc5BaseBw,3 gc5BaseBw,13 gc5BaseBw,30 gca_000147115.1 gap,25 gold,24 genbank mrna,10 mrna,26 mrna,390 mrna,482 mrna,506 xenoMrna,8 xenoMrna,25 xenoMrna,555 xenoMrna,579 gene augustusGene,5 augustusGene,10 augustusGene,40 augustusGene,112 augustusGene,157 augustusGene,163 augustusGene,305 augustusGene,320 blastHg18KG,11 cpgIslandExt,145 cpgIslandExtUnmasked,148 cpgIslandSuper,145 ensGene,7 ensGene,11 ensGene,23 ensGene,39 ensGene,58 ensGene,155 genscan,4 genscan,8 genscan,55 genscan,72 genscan,111 genscan,117 genscan,214 ncbiRefSeq,17 ncbiRefSeqCurated,15 ncbiRefSeqPredicted,13 ncbiRefSeqPsl,9 refSeqComposite,9 refSeqComposite,110 refSeqComposite,136 refSeqComposite,412 refSeqComposite,548 refSeqComposite,566 refSeqComposite,607 refSeqComposite,775 refSeqComposite,793 refSeqComposite,805 refSeqComposite,836 refSeqComposite,865 xenoRefGene,10 xenoRefGene,56 xenoRefGene,110 xenoRefGene,125 xenoRefGene,130 xenoRefGene,158 xenoRefGene,187 gene-rich gc5BaseBw,36 genepred ensGene,76 refSeqComposite,1181 refSeqComposite,1412 refSeqComposite,1587 genepredtogtf refSeqComposite,1599 refSeqComposite,1622 refSeqComposite,1629 generally rmsk,72 generate nestedRepeats,261 nestedRepeats,320 rmsk,343 generated cpgIslandExt,588 cpgIslandExtUnmasked,591 cpgIslandSuper,588 ensGene,14 nestedRepeats,282 refSeqComposite,487 refSeqComposite,1207 refSeqComposite,1725 rmsk,289 xenoRefGene,294 generating augustusGene,189 genes augustusGene,8 augustusGene,44 blastHg18KG,9 blastHg18KG,27 blastHg18KG,33 blastHg18KG,44 cpgIslandExt,20 cpgIslandExt,23 cpgIslandExtUnmasked,23 cpgIslandExtUnmasked,26 cpgIslandSuper,20 cpgIslandSuper,23 ensGene,2 ensGene,4 ensGene,5 ensGene,27 ensGene,92 genscan,2 genscan,6 genscan,59 ncbiRefSeq,5 ncbiRefSeq,15 ncbiRefSeqCurated,5 ncbiRefSeqCurated,13 ncbiRefSeqPredicted,5 ncbiRefSeqPredicted,11 ncbiRefSeqPsl,7 refSeqComposite,4 refSeqComposite,7 refSeqComposite,15 refSeqComposite,25 refSeqComposite,140 refSeqComposite,239 refSeqComposite,433 refSeqComposite,514 refSeqComposite,1219 refSeqComposite,1230 simpleRepeat,41 xenoRefGene,7 xenoRefGene,8 xenoRefGene,20 xenoRefGene,196 xenoRefGene,204 xenoRefGene,215 genet nestedRepeats,354 nestedRepeats,386 nestedRepeats,408 rmsk,377 rmsk,409 rmsk,431 genetic nestedRepeats,52 rmsk,88 genome augustusGene,31 blastHg18KG,51 chainMm10,19 chainMm10,75 chainMm10,210 chainMm10,287 chainMm10,300 chainMm10,795 chainMm10,1116 chainNetMm10,22 chainNetMm10,78 chainNetMm10,213 chainNetMm10,290 chainNetMm10,303 chainNetMm10,798 chainNetMm10,1119 cpgIslandExt,164 cpgIslandExt,302 cpgIslandExtUnmasked,167 cpgIslandExtUnmasked,305 cpgIslandSuper,164 cpgIslandSuper,302 ensGene,164 ensGene,192 gap,31 gap,94 gap,137 gold,30 gold,150 mrna,29 mrna,399 mrna,529 nestedRepeats,405 netMm10,19 netMm10,75 netMm10,210 netMm10,287 netMm10,300 netMm10,795 netMm10,1116 refSeqComposite,58 refSeqComposite,292 refSeqComposite,300 refSeqComposite,309 refSeqComposite,327 refSeqComposite,371 refSeqComposite,446 refSeqComposite,470 refSeqComposite,504 refSeqComposite,885 refSeqComposite,932 refSeqComposite,982 refSeqComposite,1068 refSeqComposite,1081 refSeqComposite,1115 refSeqComposite,1128 refSeqComposite,1190 refSeqComposite,1241 refSeqComposite,1455 refSeqComposite,1744 rmsk,428 ucscToINSDC,18 ucscToRefSeq,13 xenoMrna,472 xenoMrna,602 xenoRefGene,229 xenoRefGene,312 genome-wide refSeqComposite,1507 genomes chainMm10,25 chainMm10,596 chainMm10,1078 chainNetMm10,28 chainNetMm10,599 chainNetMm10,1081 cpgIslandExt,612 cpgIslandExtUnmasked,615 cpgIslandSuper,612 nestedRepeats,369 nestedRepeats,383 netMm10,25 netMm10,596 netMm10,1078 refSeqComposite,577 refSeqComposite,1813 rmsk,392 rmsk,406 xenoRefGene,381 genomic chainMm10,503 chainMm10,1030 chainMm10,1046 chainNetMm10,506 chainNetMm10,1033 chainNetMm10,1049 genscan,92 genscan,218 mrna,349 mrna,441 netMm10,503 netMm10,1030 netMm10,1046 refSeqComposite,844 refSeqComposite,912 refSeqComposite,936 refSeqComposite,1027 refSeqComposite,1085 refSeqComposite,1291 xenoMrna,104 xenoMrna,422 xenoMrna,514 xenoRefGene,166 xenoRefGene,279 genomics chainMm10,11 chainNetMm10,14 chainNetMm10Viewchain,12 chainNetMm10Viewnet,12 netMm10,11 genscan genscan,1 genscan,3 genscan,17 genscan,136 genscan,177 gff refSeqComposite,1174 giri nestedRepeats,56 nestedRepeats,310 rmsk,92 rmsk,333 gish blastHg18KG,159 give xenoMrna,114 given refSeqComposite,1547 gnomon refSeqComposite,376 go genscan,113 mrna,357 mrna,380 refSeqComposite,861 xenoMrna,430 xenoMrna,453 xenoRefGene,183 gold gold,92 gold,106 gr refSeqComposite,1758 xenoRefGene,326 graph gc5BaseBw,59 gc5BaseBw,78 graphical chainMm10,450 chainNetMm10,453 gold,131 netMm10,450 rmsk,211 grcm38 chainMm10,6 chainMm10,68 chainMm10,314 chainNetMm10,7 chainNetMm10,71 chainNetMm10,317 chainNetMm10Viewchain,5 chainNetMm10Viewnet,5 netMm10,6 netMm10,68 netMm10,314 greater cpgIslandExt,267 cpgIslandExt,269 cpgIslandExt,274 cpgIslandExtUnmasked,270 cpgIslandExtUnmasked,272 cpgIslandExtUnmasked,277 cpgIslandSuper,267 cpgIslandSuper,269 cpgIslandSuper,274 green cpgIslandExt,10 cpgIslandExtUnmasked,13 cpgIslandSuper,10 nestedRepeats,328 rmsk,351 group augustusGene,198 augustusGene,235 chainMm10,645 chainNetMm10,648 netMm10,645 refSeqComposite,389 refSeqComposite,451 grouped gold,42 groups augustusGene,194 gs cpgIslandExt,294 cpgIslandExtUnmasked,297 cpgIslandSuper,294 gt cpgIslandExt,422 cpgIslandExt,488 cpgIslandExtUnmasked,425 cpgIslandExtUnmasked,491 cpgIslandSuper,422 cpgIslandSuper,488 gtf ensGene,96 refSeqComposite,1573 refSeqComposite,1583 refSeqComposite,1595 guanine cpgIslandExt,52 cpgIslandExtUnmasked,55 cpgIslandSuper,52 gc5BaseBw,21 hard cpgIslandExt,416 cpgIslandExtUnmasked,419 cpgIslandSuper,416 hardison chainMm10,949 chainMm10,1106 chainNetMm10,952 chainNetMm10,1109 netMm10,949 netMm10,1106 harris chainMm10,1023 chainNetMm10,1026 netMm10,1023 hart refSeqComposite,1769 xenoRefGene,337 has mrna,66 nestedRepeats,246 refSeqComposite,621 refSeqComposite,642 refSeqComposite,678 refSeqComposite,690 refSeqComposite,703 refSeqComposite,822 xenoMrna,139 xenoRefGene,70 haussler augustusGene,292 chainMm10,984 chainMm10,1064 chainMm10,1108 chainNetMm10,987 chainNetMm10,1067 chainNetMm10,1111 netMm10,984 netMm10,1064 netMm10,1108 have chainMm10,579 chainNetMm10,582 nestedRepeats,88 netMm10,579 rmsk,69 rmsk,108 having cpgIslandExt,138 cpgIslandExtUnmasked,141 cpgIslandSuper,138 mrna,414 mrna,423 refSeqComposite,1264 refSeqComposite,1273 xenoMrna,486 xenoMrna,496 xenoRefGene,252 xenoRefGene,261 help cpgIslandExt,546 cpgIslandExtUnmasked,549 cpgIslandSuper,546 ensGene,126 gc5BaseBw,61 refSeqComposite,126 helpful mrna,94 xenoMrna,167 helps cpgIslandExt,74 cpgIslandExtUnmasked,77 cpgIslandSuper,74 hence xenoMrna,93 here refSeqComposite,998 refSeqComposite,1201 refSeqComposite,1474 refSeqComposite,1496 refSeqComposite,1690 rmsk,127 xenoMrna,88 hg.conf refSeqComposite,1645 hg18 blastHg18KG,31 hg19 refSeqComposite,578 hg38 refSeqComposite,522 refSeqComposite,580 hgdownload.soe.ucsc.edu cpgIslandExt,576 cpgIslandExtUnmasked,579 cpgIslandSuper,576 refSeqComposite,1557 hgmd refSeqComposite,554 hgvs refSeqComposite,907 refSeqComposite,920 refSeqComposite,959 refSeqComposite,988 refSeqComposite,1047 refSeqComposite,1074 refSeqComposite,1078 refSeqComposite,1098 hiatt refSeqComposite,1759 xenoRefGene,327 hidden augustusGene,324 hide refSeqComposite,176 xenoRefGene,194 hierarchy chainMm10,832 chainNetMm10,835 netMm10,832 high gc5BaseBw,29 higher chainMm10,864 chainNetMm10,867 cpgIslandExt,157 cpgIslandExtUnmasked,160 cpgIslandSuper,157 netMm10,864 rmsk,230 higher-level chainMm10,881 chainNetMm10,884 netMm10,881 higher-scoring chainMm10,825 chainMm10,844 chainNetMm10,828 chainNetMm10,847 netMm10,825 netMm10,844 highest mrna,416 refSeqComposite,1266 xenoMrna,488 xenoRefGene,254 highest-scoring chainMm10,402 chainMm10,791 chainNetMm10,405 chainNetMm10,794 netMm10,402 netMm10,791 highlight gc5BaseBw,49 mrna,285 xenoMrna,358 highlighted mrna,255 mrna,273 xenoMrna,328 xenoMrna,346 highly microsat,40 hillier cpgIslandExt,601 cpgIslandExtUnmasked,604 cpgIslandSuper,601 hinrichs chainMm10,1060 chainNetMm10,1063 netMm10,1060 hiram gc5BaseBw,82 ucscToINSDC,51 ucscToRefSeq,45 his chainMm10,958 chainNetMm10,961 netMm10,958 honeybee1 augustusGene,217 horizontal nestedRepeats,130 nestedRepeats,150 hou chainMm10,937 chainNetMm10,940 netMm10,937 housekeeping cpgIslandExt,22 cpgIslandExtUnmasked,25 cpgIslandSuper,22 how chainMm10,892 chainMm10,909 chainNetMm10,895 chainNetMm10,912 netMm10,892 netMm10,909 refSeqComposite,98 rmsk,121 however cpgIslandExt,96 cpgIslandExtUnmasked,99 cpgIslandSuper,96 hox refSeqComposite,416 http cpgIslandExt,575 cpgIslandExtUnmasked,578 cpgIslandSuper,575 nestedRepeats,332 refSeqComposite,1556 rmsk,355 hubbard ensGene,44 ensGene,168 hubley nestedRepeats,308 nestedRepeats,326 rmsk,331 rmsk,349 human augustusGene,205 augustusGene,210 augustusGene,276 blastHg18KG,1 blastHg18KG,3 blastHg18KG,42 blastHg18KG,50 chainMm10,1077 chainNetMm10,1080 genscan,217 nestedRepeats,404 netMm10,1077 refSeqComposite,247 refSeqComposite,299 refSeqComposite,565 refSeqComposite,576 refSeqComposite,1080 rmsk,427 human-mouse chainMm10,1112 chainNetMm10,1115 netMm10,1112 i mrna,475 mrna,499 xenoMrna,548 xenoMrna,572 icon refSeqComposite,758 id gap,22 gold,21 nestedRepeats,10 nestedRepeats,106 refSeqComposite,1137 identified blastHg18KG,28 chainMm10,953 chainNetMm10,956 netMm10,953 refSeqComposite,1270 xenoRefGene,258 identifier refSeqComposite,789 refSeqComposite,808 identifiers ucscToRefSeq,19 identifying cpgIslandExt,249 cpgIslandExtUnmasked,252 cpgIslandSuper,249 identity microsat,71 mrna,418 mrna,426 mrna,438 nestedRepeats,187 nestedRepeats,222 refSeqComposite,1268 refSeqComposite,1276 refSeqComposite,1288 xenoMrna,490 xenoMrna,499 xenoMrna,511 xenoRefGene,256 xenoRefGene,264 xenoRefGene,276 ideogram cytoBandIdeo,3 cytoBandIdeo,4 if gap,41 mrna,228 mrna,240 mrna,256 mrna,292 mrna,309 nestedRepeats,137 xenoMrna,301 xenoMrna,313 xenoMrna,329 xenoMrna,365 xenoMrna,382 xenoRefGene,207 ignored refSeqComposite,1461 ii215-25 augustusGene,338 immediately cpgIslandExt,48 cpgIslandExtUnmasked,51 cpgIslandSuper,48 imperfect simpleRepeat,19 improve augustusGene,302 improved chainMm10,1026 chainNetMm10,1029 netMm10,1026 in augustusGene,101 blastHg18KG,29 chainMm10,31 chainMm10,96 chainMm10,118 chainMm10,150 chainMm10,157 chainMm10,173 chainMm10,192 chainMm10,195 chainMm10,236 chainMm10,257 chainMm10,306 chainMm10,339 chainMm10,369 chainMm10,381 chainMm10,390 chainMm10,408 chainMm10,413 chainMm10,422 chainMm10,434 chainMm10,448 chainMm10,490 chainMm10,507 chainMm10,538 chainMm10,556 chainMm10,570 chainMm10,607 chainMm10,705 chainMm10,793 chainMm10,834 chainMm10,842 chainMm10,858 chainMm10,891 chainMm10,903 chainMm10,1073 chainNetMm10,34 chainNetMm10,99 chainNetMm10,121 chainNetMm10,153 chainNetMm10,160 chainNetMm10,176 chainNetMm10,195 chainNetMm10,198 chainNetMm10,239 chainNetMm10,260 chainNetMm10,309 chainNetMm10,342 chainNetMm10,372 chainNetMm10,384 chainNetMm10,393 chainNetMm10,411 chainNetMm10,416 chainNetMm10,425 chainNetMm10,437 chainNetMm10,451 chainNetMm10,493 chainNetMm10,510 chainNetMm10,541 chainNetMm10,559 chainNetMm10,573 chainNetMm10,610 chainNetMm10,708 chainNetMm10,796 chainNetMm10,837 chainNetMm10,845 chainNetMm10,861 chainNetMm10,894 chainNetMm10,906 chainNetMm10,1076 cpgIslandExt,24 cpgIslandExt,58 cpgIslandExt,64 cpgIslandExt,87 cpgIslandExt,180 cpgIslandExt,189 cpgIslandExt,214 cpgIslandExt,297 cpgIslandExt,341 cpgIslandExt,375 cpgIslandExt,610 cpgIslandExtUnmasked,27 cpgIslandExtUnmasked,61 cpgIslandExtUnmasked,67 cpgIslandExtUnmasked,90 cpgIslandExtUnmasked,183 cpgIslandExtUnmasked,192 cpgIslandExtUnmasked,217 cpgIslandExtUnmasked,300 cpgIslandExtUnmasked,344 cpgIslandExtUnmasked,378 cpgIslandExtUnmasked,613 cpgIslandSuper,24 cpgIslandSuper,58 cpgIslandSuper,64 cpgIslandSuper,87 cpgIslandSuper,180 cpgIslandSuper,189 cpgIslandSuper,214 cpgIslandSuper,297 cpgIslandSuper,341 cpgIslandSuper,375 cpgIslandSuper,610 ensGene,37 ensGene,50 ensGene,83 ensGene,90 ensGene,95 gap,12 gap,38 gap,108 gap,111 gc5BaseBw,5 gc5BaseBw,26 gc5BaseBw,43 genscan,101 genscan,150 genscan,162 genscan,165 genscan,184 genscan,188 genscan,198 genscan,216 gold,68 gold,129 microsat,42 microsat,49 mrna,25 mrna,44 mrna,100 mrna,121 mrna,144 mrna,154 mrna,172 mrna,225 mrna,409 nestedRepeats,61 nestedRepeats,64 nestedRepeats,75 nestedRepeats,115 nestedRepeats,156 nestedRepeats,167 nestedRepeats,241 nestedRepeats,339 nestedRepeats,367 nestedRepeats,381 nestedRepeats,402 netMm10,31 netMm10,96 netMm10,118 netMm10,150 netMm10,157 netMm10,173 netMm10,192 netMm10,195 netMm10,236 netMm10,257 netMm10,306 netMm10,339 netMm10,369 netMm10,381 netMm10,390 netMm10,408 netMm10,413 netMm10,422 netMm10,434 netMm10,448 netMm10,490 netMm10,507 netMm10,538 netMm10,556 netMm10,570 netMm10,607 netMm10,705 netMm10,793 netMm10,834 netMm10,842 netMm10,858 netMm10,891 netMm10,903 netMm10,1073 refSeqComposite,63 refSeqComposite,279 refSeqComposite,398 refSeqComposite,764 refSeqComposite,996 refSeqComposite,1043 refSeqComposite,1070 refSeqComposite,1147 refSeqComposite,1173 refSeqComposite,1188 refSeqComposite,1259 refSeqComposite,1306 refSeqComposite,1350 refSeqComposite,1365 refSeqComposite,1374 refSeqComposite,1384 refSeqComposite,1394 refSeqComposite,1453 refSeqComposite,1462 refSeqComposite,1477 refSeqComposite,1485 refSeqComposite,1545 refSeqComposite,1630 refSeqComposite,1667 refSeqComposite,1673 rmsk,45 rmsk,63 rmsk,97 rmsk,100 rmsk,128 rmsk,139 rmsk,209 rmsk,270 rmsk,317 rmsk,362 rmsk,390 rmsk,404 rmsk,425 xenoMrna,24 xenoMrna,47 xenoMrna,70 xenoMrna,173 xenoMrna,194 xenoMrna,217 xenoMrna,227 xenoMrna,245 xenoMrna,298 xenoMrna,481 xenoRefGene,247 include mrna,82 mrna,287 mrna,311 refSeqComposite,189 rmsk,159 rmsk,172 xenoMrna,155 xenoMrna,360 xenoMrna,384 included augustusGene,160 blastHg18KG,117 blastHg18KG,140 cpgIslandExt,306 cpgIslandExtUnmasked,309 cpgIslandSuper,306 includes refSeqComposite,218 refSeqComposite,264 refSeqComposite,348 refSeqComposite,656 rmsk,198 including refSeqComposite,803 rmsk,188 inclusion refSeqComposite,397 inconsistency refSeqComposite,881 incorporate refSeqComposite,668 indels microsat,74 independently refSeqComposite,295 indexing refSeqComposite,1472 indicate chainMm10,141 chainMm10,251 chainNetMm10,144 chainNetMm10,254 mrna,55 nestedRepeats,153 netMm10,141 netMm10,251 xenoMrna,58 indicates refSeqComposite,613 xenoMrna,75 xenoMrna,97 xenoRefGene,62 individual chainMm10,248 chainMm10,505 chainNetMm10,251 chainNetMm10,508 netMm10,248 netMm10,505 refSeqComposite,684 refSeqComposite,709 refSeqComposite,753 refSeqComposite,1500 information augustusGene,36 blastHg18KG,153 chainMm10,468 chainMm10,481 chainMm10,487 chainMm10,859 chainNetMm10,471 chainNetMm10,484 chainNetMm10,490 chainNetMm10,862 cpgIslandExt,542 cpgIslandExtUnmasked,545 cpgIslandSuper,542 ensGene,19 ensGene,159 gc5BaseBw,55 genscan,51 genscan,126 microsat,97 mrna,353 mrna,379 nestedRepeats,53 nestedRepeats,301 netMm10,468 netMm10,481 netMm10,487 netMm10,859 refSeqComposite,132 refSeqComposite,673 refSeqComposite,857 refSeqComposite,1192 refSeqComposite,1389 refSeqComposite,1393 rmsk,89 rmsk,324 simpleRepeat,58 xenoMrna,65 xenoMrna,426 xenoMrna,452 xenoRefGene,179 initial refSeqComposite,687 initiate rmsk,316 initio augustusGene,4 augustusGene,17 insdc ucscToINSDC,1 ucscToINSDC,4 ucscToINSDC,32 inserted chainMm10,581 chainMm10,915 chainNetMm10,584 chainNetMm10,918 netMm10,581 netMm10,915 insertion chainMm10,156 chainNetMm10,159 mrna,384 netMm10,156 rmsk,223 xenoMrna,457 insertions nestedRepeats,86 nestedRepeats,92 refSeqComposite,953 instead refSeqComposite,790 xenoRefGene,122 institute gap,19 gold,18 nestedRepeats,55 rmsk,91 instructions ensGene,117 integrator cpgIslandExt,526 cpgIslandExtUnmasked,529 cpgIslandSuper,526 ensGene,71 refSeqComposite,1322 interactively cpgIslandExt,515 cpgIslandExtUnmasked,518 cpgIslandSuper,515 ensGene,63 refSeqComposite,1313 intergenic genscan,47 international mrna,460 ucscToINSDC,5 ucscToINSDC,27 xenoMrna,533 internet nestedRepeats,279 interrupted nestedRepeats,1 nestedRepeats,5 nestedRepeats,21 nestedRepeats,90 nestedRepeats,121 interspersed nestedRepeats,36 nestedRepeats,373 nestedRepeats,400 rmsk,26 rmsk,154 rmsk,162 rmsk,396 rmsk,423 into chainMm10,613 chainMm10,625 chainMm10,643 chainMm10,818 chainNetMm10,616 chainNetMm10,628 chainNetMm10,646 chainNetMm10,821 cpgIslandExt,105 cpgIslandExtUnmasked,108 cpgIslandSuper,105 gold,36 gold,43 mrna,204 netMm10,613 netMm10,625 netMm10,643 netMm10,818 xenoMrna,277 intron augustusGene,88 augustusGene,330 introns chainMm10,56 chainNetMm10,59 genscan,45 netMm10,56 refSeqComposite,944 refSeqComposite,1035 inv chainMm10,543 chainNetMm10,546 netMm10,543 inversions chainMm10,114 chainMm10,180 chainNetMm10,117 chainNetMm10,183 netMm10,114 netMm10,180 invertebrate xenoMrna,22 inverted chainMm10,877 chainNetMm10,880 netMm10,877 invisible refSeqComposite,1042 refSeqComposite,1069 involve chainMm10,170 chainNetMm10,173 netMm10,170 is blastHg18KG,143 chainMm10,289 chainMm10,309 chainMm10,488 chainNetMm10,292 chainNetMm10,312 chainNetMm10,491 cpgIslandExt,56 cpgIslandExt,113 cpgIslandExt,121 cpgIslandExt,130 cpgIslandExt,160 cpgIslandExt,203 cpgIslandExt,321 cpgIslandExt,330 cpgIslandExt,335 cpgIslandExt,347 cpgIslandExt,368 cpgIslandExt,404 cpgIslandExt,494 cpgIslandExtUnmasked,59 cpgIslandExtUnmasked,116 cpgIslandExtUnmasked,124 cpgIslandExtUnmasked,133 cpgIslandExtUnmasked,163 cpgIslandExtUnmasked,206 cpgIslandExtUnmasked,324 cpgIslandExtUnmasked,333 cpgIslandExtUnmasked,338 cpgIslandExtUnmasked,350 cpgIslandExtUnmasked,371 cpgIslandExtUnmasked,407 cpgIslandExtUnmasked,497 cpgIslandSuper,56 cpgIslandSuper,113 cpgIslandSuper,121 cpgIslandSuper,130 cpgIslandSuper,160 cpgIslandSuper,203 cpgIslandSuper,321 cpgIslandSuper,330 cpgIslandSuper,335 cpgIslandSuper,347 cpgIslandSuper,368 cpgIslandSuper,404 cpgIslandSuper,494 gap,56 gap,63 gap,71 gap,116 gap,126 gc5BaseBw,32 gold,121 gold,127 microsat,88 mrna,244 mrna,260 mrna,296 mrna,313 nestedRepeats,59 nestedRepeats,123 nestedRepeats,198 nestedRepeats,219 nestedRepeats,337 netMm10,289 netMm10,309 netMm10,488 refSeqComposite,148 refSeqComposite,244 refSeqComposite,318 refSeqComposite,541 refSeqComposite,571 refSeqComposite,582 refSeqComposite,718 refSeqComposite,1063 refSeqComposite,1206 refSeqComposite,1221 refSeqComposite,1439 refSeqComposite,1445 rmsk,95 rmsk,360 simpleRepeat,28 xenoMrna,69 xenoMrna,123 xenoMrna,129 xenoMrna,317 xenoMrna,333 xenoMrna,369 xenoMrna,386 island cpgIslandExt,343 cpgIslandExtUnmasked,346 cpgIslandSuper,343 islands cpgIslandExt,2 cpgIslandExt,4 cpgIslandExt,5 cpgIslandExt,16 cpgIslandExt,27 cpgIslandExt,148 cpgIslandExt,177 cpgIslandExt,226 cpgIslandExt,320 cpgIslandExt,507 cpgIslandExt,609 cpgIslandExtUnmasked,4 cpgIslandExtUnmasked,8 cpgIslandExtUnmasked,19 cpgIslandExtUnmasked,30 cpgIslandExtUnmasked,151 cpgIslandExtUnmasked,180 cpgIslandExtUnmasked,229 cpgIslandExtUnmasked,323 cpgIslandExtUnmasked,510 cpgIslandExtUnmasked,612 cpgIslandSuper,2 cpgIslandSuper,4 cpgIslandSuper,5 cpgIslandSuper,16 cpgIslandSuper,27 cpgIslandSuper,148 cpgIslandSuper,177 cpgIslandSuper,226 cpgIslandSuper,320 cpgIslandSuper,507 cpgIslandSuper,609 issue mrna,490 mrna,516 refSeqComposite,1791 refSeqComposite,1825 xenoMrna,563 xenoMrna,589 xenoRefGene,359 xenoRefGene,393 it chainMm10,91 chainMm10,288 chainMm10,542 chainMm10,554 chainNetMm10,94 chainNetMm10,291 chainNetMm10,545 chainNetMm10,557 gap,62 genscan,143 netMm10,91 netMm10,288 netMm10,542 netMm10,554 refSeqComposite,581 refSeqComposite,1309 item nestedRepeats,197 refSeqComposite,721 xenoRefGene,79 items chainMm10,506 chainNetMm10,509 mrna,49 mrna,87 mrna,97 mrna,291 nestedRepeats,171 nestedRepeats,180 netMm10,506 refSeqComposite,771 refSeqComposite,970 refSeqComposite,1672 xenoMrna,52 xenoMrna,160 xenoMrna,170 xenoMrna,364 xenoRefGene,106 its cpgIslandExt,509 cpgIslandExtUnmasked,512 cpgIslandSuper,509 nestedRepeats,204 j blastHg18KG,172 cpgIslandExt,613 cpgIslandExtUnmasked,616 cpgIslandSuper,613 ensGene,183 genscan,220 mrna,479 mrna,503 nestedRepeats,341 refSeqComposite,1770 rmsk,364 xenoMrna,552 xenoMrna,576 xenoRefGene,338 jan chainMm10,1119 chainNetMm10,1122 ensGene,199 microsat,129 mrna,487 mrna,512 netMm10,1119 refSeqComposite,1788 refSeqComposite,1821 simpleRepeat,89 xenoMrna,560 xenoMrna,585 xenoRefGene,356 xenoRefGene,389 jim blastHg18KG,185 blastHg18KG,198 chainMm10,975 chainMm10,1002 chainMm10,1020 chainNetMm10,978 chainNetMm10,1005 chainNetMm10,1023 netMm10,975 netMm10,1002 netMm10,1020 joined chainMm10,126 chainNetMm10,129 nestedRepeats,7 nestedRepeats,18 nestedRepeats,103 nestedRepeats,128 netMm10,126 journal nestedRepeats,349 rmsk,372 json refSeqComposite,1366 refSeqComposite,1370 jul cpgIslandExt,617 cpgIslandExtUnmasked,620 cpgIslandSuper,617 gap,16 gold,15 jurka nestedRepeats,62 nestedRepeats,340 rmsk,98 rmsk,363 k augustusGene,268 mrna,473 xenoMrna,546 k1 cpgIslandExt,484 cpgIslandExtUnmasked,487 cpgIslandSuper,484 k2 cpgIslandExt,486 cpgIslandExtUnmasked,489 cpgIslandSuper,486 karlin genscan,148 genscan,209 karsch-mizrachi mrna,474 mrna,498 xenoMrna,547 xenoMrna,571 kasif genscan,193 kd refSeqComposite,1756 refSeqComposite,1798 xenoRefGene,324 xenoRefGene,366 kd-tree chainMm10,649 chainNetMm10,652 netMm10,649 kd-trees chainMm10,667 chainNetMm10,670 netMm10,667 keep cpgIslandExt,125 cpgIslandExtUnmasked,128 cpgIslandSuper,125 kent blastHg18KG,186 blastHg18KG,199 chainMm10,976 chainMm10,1003 chainMm10,1021 chainMm10,1056 chainMm10,1098 chainNetMm10,979 chainNetMm10,1006 chainNetMm10,1024 chainNetMm10,1059 chainNetMm10,1101 mrna,522 netMm10,976 netMm10,1003 netMm10,1021 netMm10,1056 netMm10,1098 refSeqComposite,1737 xenoMrna,595 xenoRefGene,306 kept mrna,444 refSeqComposite,1294 xenoMrna,517 xenoRefGene,282 km refSeqComposite,1774 xenoRefGene,342 known blastHg18KG,26 chainMm10,926 chainNetMm10,929 gold,46 gold,123 netMm10,926 refSeqComposite,509 xenoRefGene,16 l cpgIslandExt,600 cpgIslandExtUnmasked,603 cpgIslandSuper,600 ensGene,179 lab augustusGene,252 label genscan,98 refSeqComposite,768 refSeqComposite,780 refSeqComposite,816 xenoRefGene,103 xenoRefGene,115 xenoRefGene,138 labeled nestedRepeats,132 refSeqComposite,773 xenoRefGene,108 labels nestedRepeats,161 refSeqComposite,722 refSeqComposite,802 xenoRefGene,80 landrum refSeqComposite,1771 xenoRefGene,339 largely chainMm10,145 chainNetMm10,148 netMm10,145 largest chainMm10,401 chainNetMm10,404 netMm10,401 lastz chainMm10,600 chainMm10,775 chainMm10,924 chainNetMm10,603 chainNetMm10,778 chainNetMm10,927 netMm10,600 netMm10,775 netMm10,924 lavtoaxt chainMm10,618 chainNetMm10,621 netMm10,618 least blastHg18KG,130 microsat,29 microsat,78 mrna,435 refSeqComposite,1285 xenoMrna,508 xenoRefGene,273 left refSeqComposite,976 length augustusGene,82 cpgIslandExt,268 cpgIslandExt,360 cpgIslandExt,395 cpgIslandExtUnmasked,271 cpgIslandExtUnmasked,363 cpgIslandExtUnmasked,398 cpgIslandSuper,268 cpgIslandSuper,360 cpgIslandSuper,395 genscan,39 less refSeqComposite,1249 xenoRefGene,237 level chainMm10,396 chainMm10,430 chainMm10,435 chainMm10,442 chainMm10,500 chainMm10,527 chainMm10,540 chainMm10,572 chainNetMm10,399 chainNetMm10,433 chainNetMm10,438 chainNetMm10,445 chainNetMm10,503 chainNetMm10,530 chainNetMm10,543 chainNetMm10,575 mrna,427 netMm10,396 netMm10,430 netMm10,435 netMm10,442 netMm10,500 netMm10,527 netMm10,540 netMm10,572 refSeqComposite,615 refSeqComposite,635 refSeqComposite,1277 rmsk,205 xenoMrna,500 xenoRefGene,64 xenoRefGene,265 levels cpgIslandExt,158 cpgIslandExtUnmasked,161 cpgIslandSuper,158 libraries nestedRepeats,258 nestedRepeats,317 rmsk,340 library nestedRepeats,47 rmsk,83 light cpgIslandExt,9 cpgIslandExtUnmasked,12 cpgIslandSuper,9 refSeqComposite,624 xenoRefGene,73 lighter rmsk,237 like chainMm10,47 chainMm10,55 chainNetMm10,50 chainNetMm10,58 ensGene,148 netMm10,47 netMm10,55 refSeqComposite,84 refSeqComposite,1620 likely augustusGene,111 microsat,17 refSeqComposite,952 line chainMm10,478 chainNetMm10,481 gap,70 gold,126 nestedRepeats,151 netMm10,478 refSeqComposite,1007 refSeqComposite,1018 refSeqComposite,1619 rmsk,165 line-up chainMm10,545 chainNetMm10,548 netMm10,545 line-ups chainMm10,530 chainNetMm10,533 netMm10,530 lineage-specific chainMm10,950 chainNetMm10,953 netMm10,950 linear chainMm10,709 chainNetMm10,712 netMm10,709 lineargap chainMm10,715 chainNetMm10,718 netMm10,715 lines chainMm10,133 chainMm10,140 chainMm10,164 chainMm10,458 chainNetMm10,136 chainNetMm10,143 chainNetMm10,167 chainNetMm10,461 nestedRepeats,131 netMm10,133 netMm10,140 netMm10,164 netMm10,458 refSeqComposite,1002 link gc5BaseBw,63 linked refSeqComposite,1537 refSeqComposite,1652 linux.x86_64 cpgIslandExt,579 cpgIslandExtUnmasked,582 cpgIslandSuper,579 lipman blastHg18KG,165 mrna,476 mrna,500 xenoMrna,549 xenoMrna,573 list mrna,161 refSeqComposite,767 refSeqComposite,1696 xenoMrna,234 listed ensGene,49 literature refSeqComposite,284 refSeqComposite,663 little blastHg18KG,74 blastHg18KG,85 chainMm10,72 chainMm10,100 chainMm10,159 chainMm10,207 chainMm10,275 chainMm10,284 chainMm10,585 chainMm10,639 chainNetMm10,75 chainNetMm10,103 chainNetMm10,162 chainNetMm10,210 chainNetMm10,278 chainNetMm10,287 chainNetMm10,588 chainNetMm10,642 gap,28 gold,27 mrna,1 mrna,5 mrna,21 mrna,391 netMm10,72 netMm10,100 netMm10,159 netMm10,207 netMm10,275 netMm10,284 netMm10,585 netMm10,639 refSeqComposite,19 refSeqComposite,443 refSeqComposite,466 refSeqComposite,501 refSeqComposite,1238 xenoMrna,30 xenoMrna,469 xenoRefGene,25 xenoRefGene,226 local blastHg18KG,168 chainMm10,113 chainMm10,186 chainNetMm10,116 chainNetMm10,189 ensGene,73 nestedRepeats,98 netMm10,113 netMm10,186 refSeqComposite,1342 located simpleRepeat,21 location chainMm10,256 chainNetMm10,259 netMm10,256 locations gap,3 logic mrna,239 xenoMrna,312 long refSeqComposite,1031 rmsk,161 rmsk,166 longer chainMm10,83 chainNetMm10,86 netMm10,83 longest chainMm10,523 chainNetMm10,526 netMm10,523 look chainMm10,46 chainNetMm10,49 netMm10,46 low nestedRepeats,39 rmsk,29 rmsk,181 lower chainMm10,499 chainNetMm10,502 netMm10,499 lower-level chainMm10,866 chainMm10,872 chainNetMm10,869 chainNetMm10,875 netMm10,866 netMm10,872 lt refSeqComposite,948 ltr rmsk,170 m augustusGene,287 augustusGene,289 augustusGene,317 cpgIslandExt,605 cpgIslandExt,607 cpgIslandExtUnmasked,608 cpgIslandExtUnmasked,610 cpgIslandSuper,605 cpgIslandSuper,607 mrna,471 xenoMrna,544 made rmsk,110 maglott refSeqComposite,1801 xenoRefGene,369 mailing refSeqComposite,1695 make blastHg18KG,66 gold,77 refSeqComposite,117 refSeqComposite,1103 rmsk,123 makedb rmsk,131 mammalian nestedRepeats,368 nestedRepeats,382 refSeqComposite,1781 rmsk,391 rmsk,405 xenoRefGene,349 manner refSeqComposite,1632 manual refSeqComposite,259 manually refSeqComposite,251 refSeqComposite,422 many chainMm10,409 chainNetMm10,412 mrna,96 netMm10,409 xenoMrna,169 map chainMm10,337 chainNetMm10,340 netMm10,337 mapped augustusGene,298 blastHg18KG,5 nestedRepeats,233 refSeqComposite,1112 mapping cytoBandIdeo,7 gap,4 gc5BaseBw,8 gold,5 refSeqComposite,321 ucscToINSDC,10 ucscToRefSeq,5 mar augustusGene,309 mario augustusGene,102 augustusGene,283 marked refSeqComposite,529 markers microsat,23 markov augustusGene,325 masked cpgIslandExt,192 cpgIslandExt,198 cpgIslandExt,328 cpgIslandExtUnmasked,195 cpgIslandExtUnmasked,201 cpgIslandExtUnmasked,331 cpgIslandSuper,192 cpgIslandSuper,198 cpgIslandSuper,328 rmsk,71 masking cpgIslandExt,304 cpgIslandExtUnmasked,307 cpgIslandSuper,304 maskoutfa cpgIslandExt,414 cpgIslandExtUnmasked,417 cpgIslandSuper,414 match chainMm10,261 chainMm10,524 chainMm10,562 chainNetMm10,264 chainNetMm10,527 chainNetMm10,565 mrna,249 mrna,264 mrna,305 mrna,323 netMm10,261 netMm10,524 netMm10,562 refSeqComposite,916 refSeqComposite,930 xenoMrna,87 xenoMrna,322 xenoMrna,337 xenoMrna,378 xenoMrna,396 matched blastHg18KG,128 matches mrna,56 xenoMrna,59 matching chainMm10,264 chainNetMm10,267 netMm10,264 xenoMrna,102 matrix chainMm10,679 chainMm10,711 chainNetMm10,682 chainNetMm10,714 netMm10,679 netMm10,711 maximally chainMm10,671 chainNetMm10,674 cpgIslandExt,250 cpgIslandExtUnmasked,253 cpgIslandSuper,250 netMm10,671 maximum blastHg18KG,95 maxtracks augustusGene,139 may chainMm10,177 chainMm10,438 chainNetMm10,180 chainNetMm10,441 cpgIslandExt,36 cpgIslandExtUnmasked,39 cpgIslandSuper,36 gc5BaseBw,40 mrna,92 mrna,211 mrna,221 mrna,329 mrna,373 nestedRepeats,268 nestedRepeats,290 netMm10,177 netMm10,438 refSeqComposite,61 refSeqComposite,667 rmsk,297 rmsk,307 simpleRepeat,43 xenoMrna,165 xenoMrna,284 xenoMrna,294 xenoMrna,402 xenoMrna,446 mcgarvey refSeqComposite,1773 xenoRefGene,341 medium chainMm10,716 chainNetMm10,719 netMm10,716 refSeqComposite,626 xenoRefGene,75 mellifera augustusGene,216 mementos nestedRepeats,377 rmsk,400 menu refSeqComposite,854 xenoRefGene,176 method ensGene,120 methods augustusGene,46 blastHg18KG,35 chainMm10,574 chainMm10,779 chainNetMm10,577 chainNetMm10,782 cpgIslandExt,224 cpgIslandExtUnmasked,227 cpgIslandSuper,224 ensGene,29 ensGene,35 genscan,130 genscan,197 microsat,45 mrna,389 nestedRepeats,244 netMm10,574 netMm10,779 refSeqComposite,92 refSeqComposite,1144 refSeqComposite,1226 rmsk,286 simpleRepeat,55 xenoMrna,462 xenoRefGene,219 methylated cpgIslandExt,71 cpgIslandExt,100 cpgIslandExt,132 cpgIslandExtUnmasked,74 cpgIslandExtUnmasked,103 cpgIslandExtUnmasked,135 cpgIslandSuper,71 cpgIslandSuper,100 cpgIslandSuper,132 methylation cpgIslandExt,73 cpgIslandExtUnmasked,76 cpgIslandSuper,73 micro-satellites rmsk,180 microsatellite microsat,1 microsat,22 microsatellites microsat,2 miklem cpgIslandExt,598 cpgIslandExtUnmasked,601 cpgIslandSuper,598 miller blastHg18KG,161 chainMm10,944 chainMm10,981 chainMm10,1042 chainMm10,1062 chainMm10,1110 chainNetMm10,947 chainNetMm10,984 chainNetMm10,1045 chainNetMm10,1065 chainNetMm10,1113 netMm10,944 netMm10,981 netMm10,1042 netMm10,1062 netMm10,1110 minexonintronprob augustusGene,135 minimum chainMm10,692 chainNetMm10,695 netMm10,692 minmeanexonintronprob augustusGene,137 minmei chainMm10,936 chainNetMm10,939 netMm10,936 mismatch refSeqComposite,900 rmsk,218 mismatching refSeqComposite,904 mitochondrion refSeqComposite,242 mj refSeqComposite,1772 xenoRefGene,340 mm10 chainMm10,7 chainMm10,69 chainMm10,315 chainNetMm10,8 chainNetMm10,72 chainNetMm10,318 chainNetMm10Viewchain,6 chainNetMm10Viewnet,6 netMm10,7 netMm10,69 netMm10,315 mode chainMm10,393 chainNetMm10,396 gold,70 mrna,47 mrna,77 nestedRepeats,119 nestedRepeats,160 nestedRepeats,169 netMm10,393 rmsk,142 xenoMrna,50 xenoMrna,150 model augustusGene,121 augustusGene,326 genscan,140 modeling genscan,182 models augustusGene,49 augustusGene,65 augustusGene,97 augustusGene,145 augustusGene,178 genscan,158 modes chainMm10,246 chainNetMm10,249 netMm10,246 modification cpgIslandExt,591 cpgIslandExtUnmasked,594 cpgIslandSuper,591 modified rmsk,57 mol blastHg18KG,173 cpgIslandExt,614 cpgIslandExtUnmasked,617 cpgIslandSuper,614 genscan,221 molecular genscan,199 more augustusGene,35 blastHg18KG,109 blastHg18KG,152 chainMm10,166 chainMm10,228 chainNetMm10,169 chainNetMm10,231 cpgIslandExt,541 cpgIslandExtUnmasked,544 cpgIslandSuper,541 ensGene,18 ensGene,158 genscan,50 genscan,125 genscan,163 microsat,96 mrna,52 mrna,124 mrna,231 mrna,352 mrna,378 nestedRepeats,211 nestedRepeats,300 netMm10,166 netMm10,228 refSeqComposite,95 refSeqComposite,131 refSeqComposite,856 refSeqComposite,1388 refSeqComposite,1468 rmsk,323 simpleRepeat,57 xenoMrna,55 xenoMrna,197 xenoMrna,304 xenoMrna,425 xenoMrna,451 xenoRefGene,178 most augustusGene,93 augustusGene,110 nestedRepeats,249 refSeqComposite,584 refSeqComposite,951 mouse chainMm10,1 chainMm10,3 chainMm10,65 chainMm10,98 chainMm10,152 chainMm10,274 chainMm10,303 chainMm10,584 chainMm10,634 chainMm10,1075 chainNetMm10,1 chainNetMm10,4 chainNetMm10,68 chainNetMm10,101 chainNetMm10,155 chainNetMm10,277 chainNetMm10,306 chainNetMm10,587 chainNetMm10,637 chainNetMm10,1078 chainNetMm10Viewchain,2 chainNetMm10Viewnet,2 netMm10,1 netMm10,3 netMm10,65 netMm10,98 netMm10,152 netMm10,274 netMm10,303 netMm10,584 netMm10,634 netMm10,1075 mrna mrna,11 mrna,16 mrna,132 mrna,407 mrna,447 mrna,454 xenoMrna,9 xenoMrna,23 xenoMrna,205 xenoMrna,479 xenoMrna,520 xenoMrna,527 mrnas mrna,4 mrna,8 mrna,24 mrna,142 mrna,247 mrna,262 mrna,303 mrna,321 mrna,346 mrna,394 xenoMrna,2 xenoMrna,6 xenoMrna,215 xenoMrna,320 xenoMrna,335 xenoMrna,376 xenoMrna,394 xenoMrna,419 xenoMrna,464 much chainMm10,893 chainMm10,910 chainNetMm10,896 chainNetMm10,913 nestedRepeats,210 netMm10,893 netMm10,910 multiple chainMm10,198 chainNetMm10,201 mrna,209 mrna,410 netMm10,198 refSeqComposite,1260 refSeqComposite,1307 xenoMrna,282 xenoMrna,482 xenoRefGene,248 must refSeqComposite,304 refSeqComposite,1641 mutation chainMm10,187 chainNetMm10,190 netMm10,187 refSeqComposite,567 myers blastHg18KG,163 myoluc2 ensGene,80 refSeqComposite,1559 refSeqComposite,1623 mysql cpgIslandExt,538 cpgIslandExtUnmasked,541 cpgIslandSuper,538 ensGene,115 ensGene,125 refSeqComposite,1333 refSeqComposite,1636 refSeqComposite,1650 n cpgIslandExt,386 cpgIslandExt,394 cpgIslandExt,456 cpgIslandExtUnmasked,389 cpgIslandExtUnmasked,397 cpgIslandExtUnmasked,459 cpgIslandSuper,386 cpgIslandSuper,394 cpgIslandSuper,456 refSeqComposite,922 refSeqComposite,963 refSeqComposite,990 refSeqComposite,1049 refSeqComposite,1076 refSeqComposite,1091 name chainMm10,375 chainNetMm10,378 mrna,150 nestedRepeats,136 netMm10,375 refSeqComposite,763 refSeqComposite,776 refSeqComposite,786 refSeqComposite,794 refSeqComposite,806 xenoMrna,223 xenoRefGene,111 xenoRefGene,121 xenoRefGene,126 names chainMm10,250 chainNetMm10,253 netMm10,250 refSeqComposite,811 ucscToINSDC,21 ucscToINSDC,24 ucscToRefSeq,16 xenoRefGene,133 native augustusGene,295 natl chainMm10,1080 chainNetMm10,1083 netMm10,1080 natural chainMm10,831 chainNetMm10,834 netMm10,831 nbsp chainMm10,682 chainNetMm10,685 netMm10,682 ncbi blastHg18KG,147 gap,20 gold,19 ncbiRefSeq,3 ncbiRefSeqCurated,3 ncbiRefSeqPredicted,3 refSeqComposite,1 refSeqComposite,6 refSeqComposite,13 refSeqComposite,29 refSeqComposite,74 refSeqComposite,81 refSeqComposite,106 refSeqComposite,319 refSeqComposite,375 refSeqComposite,550 refSeqComposite,646 refSeqComposite,653 refSeqComposite,697 refSeqComposite,1164 refSeqComposite,1195 refSeqComposite,1211 refSeqComposite,1733 refSeqComposite,1803 ucscToINSDC,39 ucscToRefSeq,22 ucscToRefSeq,33 xenoRefGene,31 xenoRefGene,302 xenoRefGene,371 ncbirefseq refSeqComposite,1416 refSeqComposite,1560 refSeqComposite,1704 ncbirefseqcurated refSeqComposite,1419 ncbirefseqdiffs.bb refSeqComposite,1499 ncbirefseqother.bb refSeqComposite,1497 refSeqComposite,1561 ncbirefseqpredicted refSeqComposite,1422 refSeqComposite,1624 ncbirefseqpredicted.gtf refSeqComposite,1625 ncbirefseqpsl refSeqComposite,1430 ndash refSeqComposite,201 refSeqComposite,212 refSeqComposite,342 refSeqComposite,381 refSeqComposite,436 refSeqComposite,461 refSeqComposite,485 refSeqComposite,523 refSeqComposite,556 refSeqComposite,901 refSeqComposite,935 refSeqComposite,968 refSeqComposite,1026 refSeqComposite,1052 near cpgIslandExt,31 cpgIslandExtUnmasked,34 cpgIslandSuper,31 refSeqComposite,1653 necessary chainMm10,815 chainNetMm10,818 netMm10,815 nematodes augustusGene,211 net chainMm10,34 chainMm10,266 chainMm10,269 chainMm10,388 chainMm10,769 chainNetMm10,3 chainNetMm10,11 chainNetMm10,37 chainNetMm10,269 chainNetMm10,272 chainNetMm10,391 chainNetMm10,772 chainNetMm10Viewchain,9 chainNetMm10Viewnet,1 chainNetMm10Viewnet,9 netMm10,2 netMm10,9 netMm10,34 netMm10,266 netMm10,269 netMm10,388 netMm10,769 netclass chainMm10,885 chainMm10,1008 chainNetMm10,888 chainNetMm10,1011 netMm10,885 netMm10,1008 nets chainMm10,995 chainNetMm10,998 netMm10,995 netsyntenic chainMm10,853 chainMm10,1006 chainNetMm10,856 chainNetMm10,1009 netMm10,853 netMm10,1006 new augustusGene,329 newer nestedRepeats,270 rmsk,106 newly cpgIslandExt,77 cpgIslandExtUnmasked,80 cpgIslandSuper,77 next blastHg18KG,60 chainMm10,354 chainMm10,383 chainNetMm10,357 chainNetMm10,386 netMm10,354 netMm10,383 refSeqComposite,168 refSeqComposite,759 nig augustusGene,270 nm refSeqComposite,226 refSeqComposite,495 nm_ ncbiRefSeq,9 ncbiRefSeqCurated,8 nm_012309 refSeqComposite,1143 nm_012309.4 refSeqComposite,1141 no blastHg18KG,99 microsat,73 nomask cpgIslandExt,498 cpgIslandExtUnmasked,501 cpgIslandSuper,498 non-alignable chainMm10,49 chainNetMm10,52 netMm10,49 non-coding augustusGene,75 refSeqComposite,1092 xenoRefGene,195 non-little xenoMrna,3 xenoRefGene,3 non-protein-coding refSeqComposite,24 xenoRefGene,19 xenoRefGene,203 non-redundant refSeqComposite,1809 xenoRefGene,377 nonsyn chainMm10,560 chainNetMm10,563 netMm10,560 nor xenoMrna,128 normally cpgIslandExt,42 cpgIslandExtUnmasked,45 cpgIslandSuper,42 not chainMm10,820 chainNetMm10,823 cpgIslandExt,131 cpgIslandExt,186 cpgIslandExtUnmasked,134 cpgIslandExtUnmasked,189 cpgIslandSuper,131 cpgIslandSuper,186 mrna,301 netMm10,820 refSeqComposite,178 refSeqComposite,392 refSeqComposite,430 refSeqComposite,477 refSeqComposite,679 refSeqComposite,704 refSeqComposite,1064 refSeqComposite,1142 rmsk,113 rmsk,313 xenoMrna,124 xenoMrna,374 note nestedRepeats,264 refSeqComposite,177 refSeqComposite,1626 novo augustusGene,304 np refSeqComposite,228 refSeqComposite,231 np_ ncbiRefSeq,13 ncbiRefSeqCurated,10 nr refSeqComposite,227 refSeqComposite,497 nr_ ncbiRefSeq,11 ncbiRefSeqCurated,9 ns chainMm10,900 chainNetMm10,903 gap,107 netMm10,900 nuclear rmsk,155 rmsk,163 nucleic ensGene,195 microsat,125 mrna,483 mrna,508 refSeqComposite,1784 refSeqComposite,1817 simpleRepeat,85 xenoMrna,556 xenoMrna,581 xenoRefGene,352 xenoRefGene,385 nucleotide cpgIslandExt,352 cpgIslandExtUnmasked,355 cpgIslandSuper,352 ucscToINSDC,6 ucscToINSDC,28 number augustusGene,153 cpgIslandExt,279 cpgIslandExt,286 cpgIslandExt,292 cpgIslandExt,337 cpgIslandExt,383 cpgIslandExt,387 cpgIslandExt,390 cpgIslandExtUnmasked,282 cpgIslandExtUnmasked,289 cpgIslandExtUnmasked,295 cpgIslandExtUnmasked,340 cpgIslandExtUnmasked,386 cpgIslandExtUnmasked,390 cpgIslandExtUnmasked,393 cpgIslandSuper,279 cpgIslandSuper,286 cpgIslandSuper,292 cpgIslandSuper,337 cpgIslandSuper,383 cpgIslandSuper,387 cpgIslandSuper,390 rmsk,233 numbers gap,105 o refSeqComposite,1766 xenoRefGene,334 obs cpgIslandExt,380 cpgIslandExtUnmasked,383 cpgIslandSuper,380 observed cpgIslandExt,278 cpgIslandExt,364 cpgIslandExtUnmasked,281 cpgIslandExtUnmasked,367 cpgIslandSuper,278 cpgIslandSuper,364 obtained augustusGene,126 cpgIslandExt,562 cpgIslandExt,573 cpgIslandExtUnmasked,565 cpgIslandExtUnmasked,576 cpgIslandSuper,562 cpgIslandSuper,573 refSeqComposite,1491 refSeqComposite,1511 occasional refSeqComposite,64 occur simpleRepeat,36 oct augustusGene,334 blastHg18KG,176 of augustusGene,72 augustusGene,84 augustusGene,92 augustusGene,94 augustusGene,154 augustusGene,195 augustusGene,236 blastHg18KG,19 blastHg18KG,112 blastHg18KG,124 blastHg18KG,132 blastHg18KG,145 chainMm10,17 chainMm10,64 chainMm10,185 chainMm10,205 chainMm10,259 chainMm10,282 chainMm10,366 chainMm10,376 chainMm10,494 chainMm10,514 chainMm10,651 chainMm10,656 chainMm10,674 chainMm10,694 chainMm10,894 chainMm10,969 chainMm10,991 chainMm10,1015 chainMm10,1029 chainNetMm10,20 chainNetMm10,67 chainNetMm10,188 chainNetMm10,208 chainNetMm10,262 chainNetMm10,285 chainNetMm10,369 chainNetMm10,379 chainNetMm10,497 chainNetMm10,517 chainNetMm10,654 chainNetMm10,659 chainNetMm10,677 chainNetMm10,697 chainNetMm10,897 chainNetMm10,972 chainNetMm10,994 chainNetMm10,1018 chainNetMm10,1032 cpgIslandExt,91 cpgIslandExt,108 cpgIslandExt,144 cpgIslandExt,171 cpgIslandExt,200 cpgIslandExt,221 cpgIslandExt,264 cpgIslandExt,277 cpgIslandExt,280 cpgIslandExt,290 cpgIslandExt,293 cpgIslandExt,312 cpgIslandExt,338 cpgIslandExt,350 cpgIslandExt,363 cpgIslandExt,384 cpgIslandExt,388 cpgIslandExt,391 cpgIslandExt,396 cpgIslandExt,400 cpgIslandExt,592 cpgIslandExtUnmasked,94 cpgIslandExtUnmasked,111 cpgIslandExtUnmasked,147 cpgIslandExtUnmasked,174 cpgIslandExtUnmasked,203 cpgIslandExtUnmasked,224 cpgIslandExtUnmasked,267 cpgIslandExtUnmasked,280 cpgIslandExtUnmasked,283 cpgIslandExtUnmasked,293 cpgIslandExtUnmasked,296 cpgIslandExtUnmasked,315 cpgIslandExtUnmasked,341 cpgIslandExtUnmasked,353 cpgIslandExtUnmasked,366 cpgIslandExtUnmasked,387 cpgIslandExtUnmasked,391 cpgIslandExtUnmasked,394 cpgIslandExtUnmasked,399 cpgIslandExtUnmasked,403 cpgIslandExtUnmasked,595 cpgIslandSuper,91 cpgIslandSuper,108 cpgIslandSuper,144 cpgIslandSuper,171 cpgIslandSuper,200 cpgIslandSuper,221 cpgIslandSuper,264 cpgIslandSuper,277 cpgIslandSuper,280 cpgIslandSuper,290 cpgIslandSuper,293 cpgIslandSuper,312 cpgIslandSuper,338 cpgIslandSuper,350 cpgIslandSuper,363 cpgIslandSuper,384 cpgIslandSuper,388 cpgIslandSuper,391 cpgIslandSuper,396 cpgIslandSuper,400 cpgIslandSuper,592 ensGene,33 ensGene,134 gap,26 gap,47 gap,53 gap,87 gap,97 gap,106 gap,119 gap,129 gc5BaseBw,19 gc5BaseBw,46 gc5BaseBw,52 gc5BaseBw,67 gc5BaseBw,76 genscan,43 genscan,110 genscan,134 genscan,212 gold,25 gold,90 gold,115 gold,143 microsat,27 microsat,55 microsat,64 microsat,81 mrna,57 mrna,86 mrna,125 mrna,151 mrna,162 mrna,198 mrna,267 mrna,370 mrna,430 ncbiRefSeqPsl,5 nestedRepeats,4 nestedRepeats,20 nestedRepeats,27 nestedRepeats,48 nestedRepeats,83 nestedRepeats,93 nestedRepeats,108 nestedRepeats,189 nestedRepeats,195 nestedRepeats,203 nestedRepeats,228 nestedRepeats,252 nestedRepeats,350 nestedRepeats,365 nestedRepeats,378 nestedRepeats,399 netMm10,17 netMm10,64 netMm10,185 netMm10,205 netMm10,259 netMm10,282 netMm10,366 netMm10,376 netMm10,494 netMm10,514 netMm10,651 netMm10,656 netMm10,674 netMm10,694 netMm10,894 netMm10,969 netMm10,991 netMm10,1015 netMm10,1029 refSeqComposite,163 refSeqComposite,196 refSeqComposite,214 refSeqComposite,261 refSeqComposite,322 refSeqComposite,344 refSeqComposite,438 refSeqComposite,492 refSeqComposite,525 refSeqComposite,532 refSeqComposite,558 refSeqComposite,616 refSeqComposite,636 refSeqComposite,714 refSeqComposite,742 refSeqComposite,791 refSeqComposite,800 refSeqComposite,880 refSeqComposite,895 refSeqComposite,947 refSeqComposite,993 refSeqComposite,1011 refSeqComposite,1059 refSeqComposite,1248 refSeqComposite,1280 refSeqComposite,1353 refSeqComposite,1434 refSeqComposite,1436 refSeqComposite,1506 refSeqComposite,1576 refSeqComposite,1656 refSeqComposite,1702 refSeqComposite,1706 refSeqComposite,1812 rmsk,39 rmsk,59 rmsk,84 rmsk,151 rmsk,206 rmsk,216 rmsk,234 rmsk,246 rmsk,264 rmsk,373 rmsk,388 rmsk,401 rmsk,422 simpleRepeat,40 xenoMrna,19 xenoMrna,60 xenoMrna,78 xenoMrna,100 xenoMrna,110 xenoMrna,159 xenoMrna,198 xenoMrna,224 xenoMrna,235 xenoMrna,271 xenoMrna,340 xenoMrna,443 xenoMrna,503 xenoRefGene,65 xenoRefGene,84 xenoRefGene,98 xenoRefGene,123 xenoRefGene,236 xenoRefGene,268 xenoRefGene,380 off chainMm10,345 chainMm10,351 chainNetMm10,348 chainNetMm10,354 netMm10,345 netMm10,351 refSeqComposite,814 xenoRefGene,136 offers genscan,79 often chainMm10,217 chainMm10,229 chainNetMm10,220 chainNetMm10,232 netMm10,217 netMm10,229 omim refSeqComposite,788 refSeqComposite,807 omitted nestedRepeats,165 on augustusGene,29 augustusGene,37 augustusGene,151 blastHg18KG,154 chainMm10,333 chainMm10,359 chainMm10,462 chainMm10,476 chainMm10,526 chainMm10,531 chainMm10,546 chainMm10,781 chainNetMm10,336 chainNetMm10,362 chainNetMm10,465 chainNetMm10,479 chainNetMm10,529 chainNetMm10,534 chainNetMm10,549 chainNetMm10,784 cpgIslandExt,287 cpgIslandExt,323 cpgIslandExt,544 cpgIslandExt,551 cpgIslandExtUnmasked,5 cpgIslandExtUnmasked,290 cpgIslandExtUnmasked,326 cpgIslandExtUnmasked,547 cpgIslandExtUnmasked,554 cpgIslandSuper,287 cpgIslandSuper,323 cpgIslandSuper,544 cpgIslandSuper,551 ensGene,20 ensGene,118 ensGene,123 ensGene,129 ensGene,140 gap,50 genscan,27 genscan,52 gold,64 mrna,181 mrna,230 nestedRepeats,141 nestedRepeats,176 nestedRepeats,277 netMm10,333 netMm10,359 netMm10,462 netMm10,476 netMm10,526 netMm10,531 netMm10,546 netMm10,781 refSeqComposite,133 refSeqComposite,183 refSeqComposite,240 refSeqComposite,254 refSeqComposite,362 refSeqComposite,521 refSeqComposite,574 refSeqComposite,980 refSeqComposite,1124 refSeqComposite,1606 refSeqComposite,1648 refSeqComposite,1686 refSeqComposite,1711 refSeqComposite,1780 rmsk,74 xenoMrna,254 xenoMrna,303 xenoRefGene,348 once mrna,215 xenoMrna,288 one augustusGene,169 chainMm10,193 chainMm10,367 chainMm10,513 chainMm10,808 chainMm10,904 chainNetMm10,196 chainNetMm10,370 chainNetMm10,516 chainNetMm10,811 chainNetMm10,907 cpgIslandExt,233 cpgIslandExtUnmasked,236 cpgIslandSuper,233 mrna,122 mrna,233 mrna,266 netMm10,193 netMm10,367 netMm10,513 netMm10,808 netMm10,904 xenoMrna,195 xenoMrna,306 xenoMrna,339 only chainMm10,363 chainNetMm10,366 cpgIslandExt,196 cpgIslandExtUnmasked,199 cpgIslandSuper,196 microsat,61 mrna,106 mrna,246 mrna,319 mrna,421 netMm10,363 refSeqComposite,159 refSeqComposite,219 refSeqComposite,236 refSeqComposite,248 refSeqComposite,520 refSeqComposite,572 refSeqComposite,1271 refSeqComposite,1543 xenoMrna,179 xenoMrna,319 xenoMrna,392 xenoMrna,493 xenoRefGene,212 xenoRefGene,259 open-3.0 nestedRepeats,331 rmsk,354 opin nestedRepeats,385 nestedRepeats,407 rmsk,408 rmsk,430 opposite chainMm10,558 chainNetMm10,561 netMm10,558 option augustusGene,167 augustusGene,187 genscan,94 mrna,356 refSeqComposite,781 refSeqComposite,846 xenoMrna,429 xenoRefGene,116 xenoRefGene,168 optional refSeqComposite,824 xenoRefGene,146 options gc5BaseBw,70 genscan,85 mrna,387 xenoMrna,460 or blastHg18KG,200 chainMm10,30 chainMm10,131 chainMm10,154 chainMm10,188 chainMm10,497 chainMm10,876 chainMm10,905 chainNetMm10,33 chainNetMm10,134 chainNetMm10,157 chainNetMm10,191 chainNetMm10,500 chainNetMm10,879 chainNetMm10,908 cpgIslandExt,127 cpgIslandExt,266 cpgIslandExt,523 cpgIslandExtUnmasked,130 cpgIslandExtUnmasked,269 cpgIslandExtUnmasked,526 cpgIslandSuper,127 cpgIslandSuper,266 cpgIslandSuper,523 ensGene,68 ensGene,89 ensGene,110 mrna,123 mrna,258 mrna,277 mrna,286 ncbiRefSeqCurated,11 ncbiRefSeqPredicted,9 nestedRepeats,96 nestedRepeats,117 nestedRepeats,158 netMm10,30 netMm10,131 netMm10,154 netMm10,188 netMm10,497 netMm10,876 netMm10,905 refSeqComposite,87 refSeqComposite,123 refSeqComposite,229 refSeqComposite,281 refSeqComposite,356 refSeqComposite,402 refSeqComposite,411 refSeqComposite,417 refSeqComposite,426 refSeqComposite,627 refSeqComposite,648 refSeqComposite,696 refSeqComposite,787 refSeqComposite,797 refSeqComposite,812 refSeqComposite,956 refSeqComposite,978 refSeqComposite,1057 refSeqComposite,1320 refSeqComposite,1335 refSeqComposite,1502 refSeqComposite,1524 rmsk,251 rmsk,280 xenoMrna,96 xenoMrna,196 xenoMrna,331 xenoMrna,350 xenoMrna,359 xenoRefGene,134 order gap,44 gold,52 gold,112 ordered gap,131 organ mrna,147 mrna,153 xenoMrna,220 xenoMrna,226 organism chainMm10,342 chainMm10,372 chainNetMm10,345 chainNetMm10,375 netMm10,342 netMm10,372 organism-specific blastHg18KG,94 organisms chainMm10,921 chainNetMm10,924 nestedRepeats,295 netMm10,921 rmsk,302 xenoMrna,27 xenoRefGene,22 organized refSeqComposite,1383 organizes chainMm10,628 chainNetMm10,631 netMm10,628 orientation chainMm10,559 chainNetMm10,562 cytoBandIdeo,6 gap,46 gold,53 gold,114 netMm10,559 xenoMrna,77 xenoMrna,99 orientations xenoMrna,109 oriented gap,133 origin nestedRepeats,398 rmsk,421 original nestedRepeats,84 orthologs chainMm10,296 chainNetMm10,299 netMm10,296 ostell mrna,478 mrna,502 xenoMrna,551 xenoMrna,575 other augustusGene,208 chainMm10,24 chainMm10,424 chainMm10,517 chainNetMm10,27 chainNetMm10,427 chainNetMm10,520 cpgIslandExt,135 cpgIslandExtUnmasked,138 cpgIslandSuper,135 nestedRepeats,376 netMm10,24 netMm10,424 netMm10,517 refSeqComposite,276 refSeqComposite,380 refSeqComposite,383 refSeqComposite,1377 refSeqComposite,1403 rmsk,195 rmsk,399 xenoMrna,1 xenoMrna,28 xenoRefGene,1 xenoRefGene,23 others cpgIslandExt,247 cpgIslandExtUnmasked,250 cpgIslandSuper,247 nestedRepeats,214 otherwise cpgIslandExt,185 cpgIslandExtUnmasked,188 cpgIslandSuper,185 ouml augustusGene,269 our augustusGene,43 cpgIslandExt,536 cpgIslandExt,545 cpgIslandExt,552 cpgIslandExtUnmasked,539 cpgIslandExtUnmasked,548 cpgIslandExtUnmasked,555 cpgIslandSuper,536 cpgIslandSuper,545 cpgIslandSuper,552 ensGene,26 ensGene,84 ensGene,91 ensGene,113 ensGene,124 ensGene,130 ensGene,141 genscan,58 refSeqComposite,139 refSeqComposite,1331 refSeqComposite,1338 refSeqComposite,1354 refSeqComposite,1369 refSeqComposite,1493 refSeqComposite,1513 refSeqComposite,1634 refSeqComposite,1687 refSeqComposite,1694 refSeqComposite,1712 rmsk,124 rmsk,129 out chainMm10,650 chainNetMm10,653 netMm10,650 output cpgIslandExt,499 cpgIslandExtUnmasked,502 cpgIslandSuper,499 nestedRepeats,26 nestedRepeats,110 outputs rmsk,35 outside refSeqComposite,694 over blastHg18KG,108 blastHg18KG,122 chainMm10,201 chainMm10,665 chainNetMm10,204 chainNetMm10,668 cpgIslandExt,97 cpgIslandExtUnmasked,100 cpgIslandSuper,97 netMm10,201 netMm10,665 refSeqComposite,1039 overlapping chainMm10,116 chainMm10,181 chainNetMm10,119 chainNetMm10,184 gap,120 netMm10,116 netMm10,181 p genscan,205 nestedRepeats,329 rmsk,352 pac chainMm10,1049 chainNetMm10,1052 netMm10,1049 pack chainMm10,239 chainNetMm10,242 nestedRepeats,116 netMm10,239 page cpgIslandExt,223 cpgIslandExt,547 cpgIslandExtUnmasked,226 cpgIslandExtUnmasked,550 cpgIslandSuper,223 cpgIslandSuper,547 ensGene,127 ensGene,166 genscan,78 genscan,123 mrna,62 mrna,367 mrna,388 refSeqComposite,115 refSeqComposite,746 refSeqComposite,871 refSeqComposite,1131 refSeqComposite,1651 rmsk,77 xenoMrna,135 xenoMrna,440 xenoMrna,461 xenoRefGene,102 xenoRefGene,193 pages chainMm10,786 chainNetMm10,789 netMm10,786 pair gap,60 gap,151 paired-end gap,141 gold,65 pairwise chainMm10,1027 chainMm10,1045 chainNetMm10,1030 chainNetMm10,1048 netMm10,1027 netMm10,1045 paralogs chainMm10,232 chainNetMm10,235 netMm10,232 parent cpgIslandExt,83 cpgIslandExtUnmasked,86 cpgIslandSuper,83 part blastHg18KG,144 chainMm10,281 chainNetMm10,284 netMm10,281 refSeqComposite,531 particular augustusGene,234 chainMm10,203 chainNetMm10,206 netMm10,203 refSeqComposite,298 particularly cpgIslandExt,21 cpgIslandExtUnmasked,24 cpgIslandSuper,21 parts chainMm10,39 chainMm10,50 chainNetMm10,42 chainNetMm10,53 netMm10,39 netMm10,50 xenoMrna,72 patterns augustusGene,56 penalty blastHg18KG,101 pennsylvania chainMm10,932 chainMm10,1035 chainNetMm10,935 chainNetMm10,1038 netMm10,932 netMm10,1035 peptides blastHg18KG,21 percent gc5BaseBw,2 gc5BaseBw,4 gc5BaseBw,14 percentage cpgIslandExt,345 cpgIslandExtUnmasked,348 cpgIslandSuper,345 gc5BaseBw,18 perfect microsat,31 performed cpgIslandExt,405 cpgIslandExtUnmasked,408 cpgIslandSuper,405 perhaps cpgIslandExt,137 cpgIslandExtUnmasked,140 cpgIslandSuper,137 period microsat,65 permitted rmsk,314 ph.d chainMm10,1032 chainNetMm10,1035 netMm10,1032 pipeline refSeqComposite,1197 place chainMm10,805 chainNetMm10,808 netMm10,805 placed chainMm10,847 chainNetMm10,850 netMm10,847 placement refSeqComposite,972 places mrna,411 refSeqComposite,1261 xenoMrna,483 xenoRefGene,249 please ensGene,41 ensGene,160 refSeqComposite,104 refSeqComposite,1117 refSeqComposite,1691 plus refSeqComposite,906 pmc chainMm10,1094 chainMm10,1125 chainNetMm10,1097 chainNetMm10,1128 ensGene,206 microsat,136 mrna,494 mrna,520 mrna,538 netMm10,1094 netMm10,1125 refSeqComposite,1753 refSeqComposite,1795 refSeqComposite,1829 simpleRepeat,96 xenoMrna,567 xenoMrna,593 xenoMrna,611 xenoRefGene,321 xenoRefGene,363 xenoRefGene,397 pmc148217 microsat,137 simpleRepeat,97 pmc187518 mrna,539 refSeqComposite,1754 xenoMrna,612 xenoRefGene,322 pmc208784 chainMm10,1095 chainNetMm10,1098 netMm10,1095 pmc308779 mrna,521 xenoMrna,594 pmc3531190 mrna,495 xenoMrna,568 pmc3965018 refSeqComposite,1796 xenoRefGene,364 pmc430961 chainMm10,1126 chainNetMm10,1129 netMm10,1126 pmc539979 refSeqComposite,1830 xenoRefGene,398 pmc99161 ensGene,207 pmid augustusGene,314 augustusGene,339 chainMm10,1054 chainMm10,1092 chainMm10,1123 chainNetMm10,1057 chainNetMm10,1095 chainNetMm10,1126 cpgIslandExt,622 cpgIslandExtUnmasked,625 cpgIslandSuper,622 ensGene,204 genscan,229 microsat,134 mrna,492 mrna,518 mrna,536 nestedRepeats,360 nestedRepeats,393 nestedRepeats,415 netMm10,1054 netMm10,1092 netMm10,1123 refSeqComposite,1751 refSeqComposite,1793 refSeqComposite,1827 rmsk,383 rmsk,416 rmsk,438 simpleRepeat,94 xenoMrna,565 xenoMrna,591 xenoMrna,609 xenoRefGene,319 xenoRefGene,361 xenoRefGene,395 point rmsk,269 poly-a augustusGene,62 polymorphic microsat,41 simpleRepeat,46 population microsat,44 position chainMm10,721 chainNetMm10,724 netMm10,721 refSeqComposite,991 possible chainMm10,418 chainNetMm10,421 gold,39 netMm10,418 refSeqComposite,187 possibly chainMm10,295 chainNetMm10,298 netMm10,295 simpleRepeat,18 potential cpgIslandExt,175 cpgIslandExtUnmasked,178 cpgIslandSuper,175 pre-mrna genscan,185 precompiled refSeqComposite,1528 predicted blastHg18KG,24 blastHg18KG,38 cpgIslandExt,228 cpgIslandExtUnmasked,231 cpgIslandSuper,228 ncbiRefSeq,8 ncbiRefSeqPredicted,2 ncbiRefSeqPredicted,6 refSeqComposite,205 refSeqComposite,341 refSeqComposite,360 refSeqComposite,405 refSeqComposite,597 refSeqComposite,623 refSeqComposite,699 refSeqComposite,719 refSeqComposite,1421 refSeqComposite,1681 xenoMrna,116 xenoRefGene,72 prediction augustusGene,321 genscan,73 genscan,211 refSeqComposite,377 refSeqComposite,608 xenoRefGene,57 predictions augustusGene,6 augustusGene,11 augustusGene,18 augustusGene,26 augustusGene,191 blastHg18KG,12 ensGene,8 ensGene,12 ensGene,40 genscan,5 genscan,9 genscan,14 genscan,24 genscan,112 genscan,118 ncbiRefSeq,18 ncbiRefSeqCurated,16 ncbiRefSeqPredicted,14 ncbiRefSeqPsl,10 refSeqComposite,10 refSeqComposite,837 refSeqComposite,866 xenoRefGene,11 xenoRefGene,159 xenoRefGene,188 prepared gc5BaseBw,80 ucscToINSDC,49 ucscToRefSeq,43 present cpgIslandExt,154 cpgIslandExtUnmasked,157 cpgIslandSuper,154 rmsk,44 presentation gc5BaseBw,75 pressure cpgIslandExt,123 cpgIslandExtUnmasked,126 cpgIslandSuper,123 previous ensGene,132 refSeqComposite,1228 refSeqComposite,1345 refSeqComposite,1700 previously chainMm10,925 chainNetMm10,928 netMm10,925 refSeqComposite,508 principal gap,85 printf cpgIslandExt,435 cpgIslandExtUnmasked,438 cpgIslandSuper,435 proc chainMm10,1079 chainNetMm10,1082 netMm10,1079 process chainMm10,829 chainNetMm10,832 gap,139 netMm10,829 refSeqComposite,655 processed chainMm10,220 chainNetMm10,223 netMm10,220 processing refSeqComposite,1343 produce blastHg18KG,192 produced mrna,450 refSeqComposite,385 refSeqComposite,1720 xenoMrna,85 xenoMrna,523 xenoRefGene,287 produces refSeqComposite,50 program augustusGene,21 augustusGene,257 blastHg18KG,55 blastHg18KG,81 chainMm10,619 chainMm10,661 chainMm10,799 chainMm10,852 chainMm10,884 chainMm10,960 chainMm10,963 chainNetMm10,622 chainNetMm10,664 chainNetMm10,802 chainNetMm10,855 chainNetMm10,887 chainNetMm10,963 chainNetMm10,966 cpgIslandExt,559 cpgIslandExt,569 cpgIslandExt,594 cpgIslandExtUnmasked,562 cpgIslandExtUnmasked,572 cpgIslandExtUnmasked,597 cpgIslandSuper,559 cpgIslandSuper,569 cpgIslandSuper,594 genscan,18 genscan,137 genscan,178 microsat,100 microsat,120 mrna,403 nestedRepeats,30 netMm10,619 netMm10,661 netMm10,799 netMm10,852 netMm10,884 netMm10,960 netMm10,963 rmsk,20 rmsk,34 simpleRepeat,62 simpleRepeat,80 programmatic ensGene,99 programmatically refSeqComposite,1329 programs chainMm10,1009 chainNetMm10,1012 netMm10,1009 project ensGene,194 gap,21 gold,20 refSeqComposite,1166 refSeqComposite,1735 xenoRefGene,304 promoter cpgIslandExt,40 cpgIslandExtUnmasked,43 cpgIslandSuper,40 proofreading cpgIslandExt,93 cpgIslandExtUnmasked,96 cpgIslandSuper,93 properties refSeqComposite,726 protein blastHg18KG,115 blastHg18KG,134 refSeqComposite,270 refSeqComposite,363 xenoMrna,84 xenoMrna,117 protein-coding augustusGene,73 refSeqComposite,22 refSeqComposite,238 refSeqComposite,547 xenoRefGene,17 xenoRefGene,201 proteins blastHg18KG,2 blastHg18KG,4 blastHg18KG,39 refSeqComposite,1816 xenoRefGene,384 protocadherin refSeqComposite,418 provided refSeqComposite,39 refSeqComposite,70 refSeqComposite,207 refSeqComposite,447 providing augustusGene,254 ensGene,153 genscan,175 nestedRepeats,312 rmsk,335 provisional refSeqComposite,625 refSeqComposite,674 xenoRefGene,74 pruitt refSeqComposite,1755 refSeqComposite,1797 xenoRefGene,323 xenoRefGene,365 pseudogenes chainMm10,221 chainMm10,235 chainNetMm10,224 chainNetMm10,238 netMm10,221 netMm10,235 refSeqComposite,410 psl mrna,41 refSeqComposite,457 refSeqComposite,1183 refSeqComposite,1426 xenoMrna,44 public cpgIslandExt,537 cpgIslandExtUnmasked,540 cpgIslandSuper,537 ensGene,114 mrna,461 refSeqComposite,1332 refSeqComposite,1635 xenoMrna,534 publications refSeqComposite,255 refSeqComposite,425 publicly nestedRepeats,275 pull-down refSeqComposite,853 xenoRefGene,175 purpose simpleRepeat,32 putative blastHg18KG,84 qgap chainMm10,733 chainNetMm10,736 netMm10,733 quality mrna,59 xenoMrna,62 queried cpgIslandExt,533 cpgIslandExtUnmasked,536 cpgIslandSuper,533 ensGene,105 query blastHg18KG,114 blastHg18KG,126 rmsk,47 rmsk,61 xenoMrna,80 questions refSeqComposite,1699 quickly mrna,344 refSeqComposite,832 xenoMrna,417 xenoRefGene,154 quite simpleRepeat,45 quot chainMm10,26 chainMm10,28 chainMm10,33 chainMm10,35 chainMm10,105 chainMm10,107 chainMm10,238 chainMm10,240 chainMm10,242 chainMm10,244 chainMm10,350 chainMm10,352 chainMm10,695 chainMm10,697 chainNetMm10,29 chainNetMm10,31 chainNetMm10,36 chainNetMm10,38 chainNetMm10,108 chainNetMm10,110 chainNetMm10,241 chainNetMm10,243 chainNetMm10,245 chainNetMm10,247 chainNetMm10,353 chainNetMm10,355 chainNetMm10,698 chainNetMm10,700 gc5BaseBw,58 gc5BaseBw,62 gold,48 gold,50 gold,146 gold,148 mrna,190 mrna,192 mrna,241 mrna,243 mrna,257 mrna,259 mrna,293 mrna,295 mrna,310 mrna,312 netMm10,26 netMm10,28 netMm10,33 netMm10,35 netMm10,105 netMm10,107 netMm10,238 netMm10,240 netMm10,242 netMm10,244 netMm10,350 netMm10,352 netMm10,695 netMm10,697 refSeqComposite,512 refSeqComposite,515 refSeqComposite,1440 refSeqComposite,1442 rmsk,130 rmsk,133 rmsk,241 rmsk,242 rmsk,248 rmsk,250 rmsk,252 rmsk,254 rmsk,275 rmsk,276 xenoMrna,263 xenoMrna,265 xenoMrna,314 xenoMrna,316 xenoMrna,330 xenoMrna,332 xenoMrna,366 xenoMrna,368 xenoMrna,383 xenoMrna,385 r augustusGene,291 chainMm10,1059 chainMm10,1105 chainNetMm10,1062 chainNetMm10,1108 nestedRepeats,327 netMm10,1059 netMm10,1105 rmsk,350 r.s chainMm10,1024 chainNetMm10,1027 netMm10,1024 random augustusGene,119 raney blastHg18KG,202 range nestedRepeats,227 nestedRepeats,236 refSeqComposite,992 ranked chainMm10,796 chainNetMm10,799 netMm10,796 rare cpgIslandExt,57 cpgIslandExt,118 cpgIslandExtUnmasked,60 cpgIslandExtUnmasked,121 cpgIslandSuper,57 cpgIslandSuper,118 ratio cpgIslandExt,273 cpgIslandExt,349 cpgIslandExt,362 cpgIslandExtUnmasked,276 cpgIslandExtUnmasked,352 cpgIslandExtUnmasked,365 cpgIslandSuper,273 cpgIslandSuper,349 cpgIslandSuper,362 raw refSeqComposite,1298 rc chainMm10,1107 chainNetMm10,1110 netMm10,1107 rmsk,200 read gap,59 gap,150 gold,66 refSeqComposite,1467 reads gap,122 gap,142 gold,33 realigning refSeqComposite,52 realignment refSeqComposite,60 refSeqComposite,491 rearrangement chainMm10,301 chainMm10,504 chainMm10,1072 chainNetMm10,304 chainNetMm10,507 chainNetMm10,1075 netMm10,301 netMm10,504 netMm10,1072 rearrangements nestedRepeats,99 reason cpgIslandExt,136 cpgIslandExtUnmasked,139 cpgIslandSuper,136 record refSeqComposite,620 refSeqComposite,641 refSeqComposite,677 refSeqComposite,702 refSeqComposite,717 xenoRefGene,69 records refSeqComposite,129 refSeqComposite,666 refer ensGene,42 genscan,144 refSeqComposite,1692 reference refSeqComposite,31 refSeqComposite,112 refSeqComposite,469 refSeqComposite,884 refSeqComposite,1094 refSeqComposite,1782 refSeqComposite,1804 ucscToRefSeq,23 xenoRefGene,33 xenoRefGene,350 xenoRefGene,372 references augustusGene,285 chainMm10,1022 chainNetMm10,1025 cpgIslandExt,603 cpgIslandExtUnmasked,606 cpgIslandSuper,603 ensGene,52 ensGene,167 genscan,152 genscan,179 microsat,113 mrna,467 nestedRepeats,66 nestedRepeats,323 netMm10,1022 refSeqComposite,1736 rmsk,102 rmsk,346 simpleRepeat,73 xenoMrna,540 xenoRefGene,305 refgene refSeqComposite,1425 reflects rmsk,213 refseq ncbiRefSeq,1 ncbiRefSeq,4 ncbiRefSeqCurated,1 ncbiRefSeqCurated,4 ncbiRefSeqPredicted,1 ncbiRefSeqPredicted,4 ncbiRefSeqPsl,1 ncbiRefSeqPsl,3 refSeqComposite,2 refSeqComposite,3 refSeqComposite,14 refSeqComposite,34 refSeqComposite,41 refSeqComposite,46 refSeqComposite,54 refSeqComposite,85 refSeqComposite,88 refSeqComposite,114 refSeqComposite,128 refSeqComposite,190 refSeqComposite,197 refSeqComposite,199 refSeqComposite,209 refSeqComposite,210 refSeqComposite,215 refSeqComposite,315 refSeqComposite,336 refSeqComposite,340 refSeqComposite,345 refSeqComposite,379 refSeqComposite,388 refSeqComposite,400 refSeqComposite,404 refSeqComposite,434 refSeqComposite,439 refSeqComposite,450 refSeqComposite,459 refSeqComposite,473 refSeqComposite,484 refSeqComposite,513 refSeqComposite,517 refSeqComposite,526 refSeqComposite,534 refSeqComposite,551 refSeqComposite,553 refSeqComposite,559 refSeqComposite,586 refSeqComposite,592 refSeqComposite,594 refSeqComposite,596 refSeqComposite,600 refSeqComposite,619 refSeqComposite,633 refSeqComposite,640 refSeqComposite,665 refSeqComposite,676 refSeqComposite,701 refSeqComposite,716 refSeqComposite,873 refSeqComposite,889 refSeqComposite,1100 refSeqComposite,1120 refSeqComposite,1135 refSeqComposite,1149 refSeqComposite,1152 refSeqComposite,1165 refSeqComposite,1172 refSeqComposite,1203 refSeqComposite,1213 refSeqComposite,1218 refSeqComposite,1229 refSeqComposite,1232 refSeqComposite,1362 refSeqComposite,1376 refSeqComposite,1379 refSeqComposite,1414 refSeqComposite,1417 refSeqComposite,1420 refSeqComposite,1424 refSeqComposite,1428 refSeqComposite,1578 refSeqComposite,1675 refSeqComposite,1677 refSeqComposite,1680 refSeqComposite,1734 refSeqComposite,1777 refSeqComposite,1806 ucscToRefSeq,1 ucscToRefSeq,3 ucscToRefSeq,26 xenoRefGene,2 xenoRefGene,6 xenoRefGene,36 xenoRefGene,68 xenoRefGene,303 xenoRefGene,345 xenoRefGene,374 refseqdiffs refSeqComposite,1481 refseqother refSeqComposite,1479 region chainMm10,204 chainMm10,407 chainNetMm10,207 chainNetMm10,410 cpgIslandExt,129 cpgIslandExtUnmasked,132 cpgIslandSuper,129 netMm10,204 netMm10,407 refSeqComposite,995 refSeqComposite,1548 regions augustusGene,76 chainMm10,16 chainMm10,138 chainMm10,294 chainNetMm10,19 chainNetMm10,141 chainNetMm10,297 cpgIslandExt,41 cpgIslandExt,150 cpgIslandExt,182 cpgIslandExtUnmasked,44 cpgIslandExtUnmasked,153 cpgIslandExtUnmasked,185 cpgIslandSuper,41 cpgIslandSuper,150 cpgIslandSuper,182 genscan,48 microsat,14 netMm10,16 netMm10,138 netMm10,294 refSeqComposite,1501 simpleRepeat,39 regulation cpgIslandExt,13 cpgIslandExt,143 cpgIslandExtUnmasked,16 cpgIslandExtUnmasked,146 cpgIslandSuper,13 cpgIslandSuper,143 related augustusGene,242 relationship chainMm10,862 chainNetMm10,865 netMm10,862 relative chainMm10,878 chainNetMm10,881 gap,43 gold,111 netMm10,878 relatively cpgIslandExt,117 cpgIslandExtUnmasked,120 cpgIslandSuper,117 release refSeqComposite,1122 relevant mrna,109 xenoMrna,182 remaining blastHg18KG,188 chainMm10,701 chainNetMm10,704 netMm10,701 removed chainMm10,590 chainNetMm10,593 cpgIslandExt,331 cpgIslandExtUnmasked,334 cpgIslandSuper,331 netMm10,590 rmsk,279 repbase nestedRepeats,45 nestedRepeats,57 nestedRepeats,335 nestedRepeats,342 rmsk,81 rmsk,93 rmsk,114 rmsk,358 rmsk,365 repeat cpgIslandExt,181 cpgIslandExt,191 cpgIslandExtUnmasked,184 cpgIslandExtUnmasked,194 cpgIslandSuper,181 cpgIslandSuper,191 microsat,83 nestedRepeats,85 nestedRepeats,122 nestedRepeats,135 nestedRepeats,257 nestedRepeats,316 rmsk,168 rmsk,175 rmsk,227 rmsk,339 simpleRepeat,47 repeating rmsk,2 repeatmasker chainMm10,959 chainNetMm10,962 nestedRepeats,9 nestedRepeats,29 nestedRepeats,73 nestedRepeats,77 nestedRepeats,109 nestedRepeats,254 nestedRepeats,285 nestedRepeats,330 netMm10,959 rmsk,1 rmsk,5 rmsk,19 rmsk,78 rmsk,292 rmsk,353 repeats chainMm10,951 chainNetMm10,954 microsat,6 microsat,9 microsat,35 microsat,58 microsat,63 microsat,86 microsat,93 microsat,106 microsat,117 nestedRepeats,6 nestedRepeats,13 nestedRepeats,22 nestedRepeats,37 nestedRepeats,49 nestedRepeats,95 nestedRepeats,366 nestedRepeats,374 nestedRepeats,401 netMm10,951 rmsk,8 rmsk,27 rmsk,41 rmsk,68 rmsk,85 rmsk,152 rmsk,179 rmsk,183 rmsk,185 rmsk,187 rmsk,196 rmsk,303 rmsk,310 rmsk,389 rmsk,397 rmsk,424 simpleRepeat,2 simpleRepeat,5 simpleRepeat,10 simpleRepeat,17 simpleRepeat,20 simpleRepeat,24 simpleRepeat,34 simpleRepeat,77 repetitive nestedRepeats,351 refSeqComposite,985 refSeqComposite,1013 rmsk,374 reporting refSeqComposite,1097 represent chainMm10,136 chainMm10,165 chainMm10,454 chainMm10,459 chainNetMm10,139 chainNetMm10,168 chainNetMm10,457 chainNetMm10,462 netMm10,136 netMm10,165 netMm10,454 netMm10,459 representative refSeqComposite,544 represented gap,34 gap,102 rmsk,49 representing gap,77 required refSeqComposite,914 refSeqComposite,928 requirements refSeqComposite,395 res chainMm10,1117 chainNetMm10,1120 ensGene,197 microsat,127 mrna,485 mrna,510 mrna,530 netMm10,1117 refSeqComposite,1745 refSeqComposite,1786 refSeqComposite,1819 simpleRepeat,87 xenoMrna,558 xenoMrna,583 xenoMrna,603 xenoRefGene,313 xenoRefGene,354 xenoRefGene,387 research nestedRepeats,54 refSeqComposite,1108 rmsk,90 rest cpgIslandExt,518 cpgIslandExtUnmasked,521 cpgIslandSuper,518 ensGene,108 refSeqComposite,1316 restricted refSeqComposite,585 result chainMm10,178 chainNetMm10,181 cpgIslandExt,112 cpgIslandExtUnmasked,115 cpgIslandSuper,112 netMm10,178 refSeqComposite,62 resulting chainMm10,609 chainNetMm10,612 netMm10,609 refSeqComposite,286 results refSeqComposite,1106 retroposons rmsk,173 review refSeqComposite,617 refSeqComposite,637 refSeqComposite,654 refSeqComposite,685 refSeqComposite,710 xenoRefGene,66 reviewed refSeqComposite,628 refSeqComposite,638 refSeqComposite,644 xenoRefGene,76 reviews refSeqComposite,260 right refSeqComposite,979 rightmost refSeqComposite,1021 rna refSeqComposite,30 refSeqComposite,1093 refSeqComposite,1153 refSeqComposite,1214 refSeqComposite,1257 refSeqComposite,1665 rmsk,186 rmsk,189 xenoRefGene,32 xenoRefGene,245 xenoRefGene,291 rna-seq refSeqComposite,76 refSeqComposite,367 rnas ncbiRefSeqPsl,6 refSeqComposite,55 refSeqComposite,440 refSeqComposite,493 refSeqComposite,1233 xenoRefGene,221 robert chainMm10,999 chainNetMm10,1002 nestedRepeats,307 netMm10,999 rmsk,330 rolling rmsk,201 ross chainMm10,948 chainNetMm10,951 netMm10,948 row nestedRepeats,179 rpts nestedRepeats,2 rrna rmsk,191 run chainMm10,664 chainNetMm10,667 netMm10,664 refSeqComposite,1615 s augustusGene,104 augustusGene,221 augustusGene,319 blastHg18KG,135 chainMm10,1067 chainMm10,1084 chainMm10,1097 chainNetMm10,1070 chainNetMm10,1087 chainNetMm10,1100 cpgIslandExt,436 cpgIslandExt,440 cpgIslandExt,442 cpgIslandExt,443 cpgIslandExt,445 cpgIslandExt,447 cpgIslandExt,453 cpgIslandExt,455 cpgIslandExtUnmasked,439 cpgIslandExtUnmasked,443 cpgIslandExtUnmasked,445 cpgIslandExtUnmasked,446 cpgIslandExtUnmasked,448 cpgIslandExtUnmasked,450 cpgIslandExtUnmasked,456 cpgIslandExtUnmasked,458 cpgIslandSuper,436 cpgIslandSuper,440 cpgIslandSuper,442 cpgIslandSuper,443 cpgIslandSuper,445 cpgIslandSuper,447 cpgIslandSuper,453 cpgIslandSuper,455 genscan,190 genscan,194 genscan,210 nestedRepeats,286 netMm10,1067 netMm10,1084 netMm10,1097 refSeqComposite,107 refSeqComposite,320 refSeqComposite,471 refSeqComposite,490 refSeqComposite,1127 refSeqComposite,1212 rmsk,18 rmsk,293 saccharomyces augustusGene,223 safely refSeqComposite,1460 salzberg genscan,189 same chainMm10,533 chainMm10,548 chainNetMm10,536 chainNetMm10,551 nestedRepeats,143 netMm10,533 netMm10,548 refSeqComposite,1225 xenoMrna,126 xenoMrna,131 sample augustusGene,133 sampling augustusGene,129 santa chainMm10,972 chainMm10,1017 chainNetMm10,975 chainNetMm10,1020 netMm10,972 netMm10,1017 satellite rmsk,184 save cpgIslandExt,582 cpgIslandExtUnmasked,585 cpgIslandSuper,582 sayers mrna,480 xenoMrna,553 scaffold gold,61 gold,82 gold,120 scaffolds gold,44 schwartz chainMm10,939 chainMm10,1096 chainNetMm10,942 chainNetMm10,1099 netMm10,939 netMm10,1096 sci chainMm10,1082 chainNetMm10,1085 netMm10,1082 science genscan,203 scientific refSeqComposite,283 scientists mrna,465 refSeqComposite,1727 xenoMrna,538 xenoRefGene,296 score chainMm10,693 chainNetMm10,696 nestedRepeats,188 nestedRepeats,216 nestedRepeats,223 netMm10,693 scoring chainMm10,79 chainMm10,89 chainMm10,672 chainMm10,689 chainMm10,1044 chainNetMm10,82 chainNetMm10,92 chainNetMm10,675 chainNetMm10,692 chainNetMm10,1047 cpgIslandExt,238 cpgIslandExt,251 cpgIslandExtUnmasked,241 cpgIslandExtUnmasked,254 cpgIslandSuper,238 cpgIslandSuper,251 netMm10,79 netMm10,89 netMm10,672 netMm10,689 netMm10,1044 scott chainMm10,938 chainNetMm10,941 netMm10,938 screens nestedRepeats,32 rmsk,22 scrna rmsk,193 search blastHg18KG,170 searching cpgIslandExt,230 cpgIslandExtUnmasked,233 cpgIslandSuper,230 searls genscan,191 second xenoMrna,95 section ensGene,53 genscan,153 nestedRepeats,67 refSeqComposite,93 refSeqComposite,1660 rmsk,103 sections chainMm10,819 chainNetMm10,822 netMm10,819 see augustusGene,42 blastHg18KG,156 ensGene,25 ensGene,161 genscan,57 microsat,101 nestedRepeats,296 nestedRepeats,370 refSeqComposite,90 refSeqComposite,138 refSeqComposite,338 refSeqComposite,549 rmsk,319 rmsk,393 simpleRepeat,63 xenoRefGene,211 segment cpgIslandExt,254 cpgIslandExt,299 cpgIslandExtUnmasked,257 cpgIslandExtUnmasked,302 cpgIslandSuper,254 cpgIslandSuper,299 segments cpgIslandExt,252 cpgIslandExtUnmasked,255 cpgIslandSuper,252 select genscan,90 refSeqComposite,518 refSeqComposite,535 refSeqComposite,539 refSeqComposite,552 refSeqComposite,842 xenoRefGene,164 selected mrna,245 mrna,261 mrna,314 refSeqComposite,161 xenoMrna,318 xenoMrna,334 xenoMrna,387 selecting microsat,60 selective cpgIslandExt,122 cpgIslandExtUnmasked,125 cpgIslandSuper,122 semi-markov augustusGene,117 sep chainMm10,1087 chainNetMm10,1090 nestedRepeats,356 netMm10,1087 rmsk,379 separated mrna,216 xenoMrna,289 sequence augustusGene,32 augustusGene,70 blastHg18KG,77 chainMm10,172 chainMm10,304 chainMm10,1047 chainNetMm10,175 chainNetMm10,307 chainNetMm10,1050 cpgIslandExt,232 cpgIslandExt,303 cpgIslandExt,325 cpgIslandExt,329 cpgIslandExt,397 cpgIslandExt,410 cpgIslandExtUnmasked,7 cpgIslandExtUnmasked,235 cpgIslandExtUnmasked,306 cpgIslandExtUnmasked,328 cpgIslandExtUnmasked,332 cpgIslandExtUnmasked,400 cpgIslandExtUnmasked,413 cpgIslandSuper,232 cpgIslandSuper,303 cpgIslandSuper,325 cpgIslandSuper,329 cpgIslandSuper,397 cpgIslandSuper,410 gap,121 mrna,350 mrna,442 mrna,455 mrna,462 netMm10,172 netMm10,304 netMm10,1047 refSeqComposite,659 refSeqComposite,670 refSeqComposite,886 refSeqComposite,986 refSeqComposite,1014 refSeqComposite,1041 refSeqComposite,1053 refSeqComposite,1086 refSeqComposite,1090 refSeqComposite,1095 refSeqComposite,1292 refSeqComposite,1805 refSeqComposite,1810 rmsk,48 rmsk,62 ucscToINSDC,7 ucscToINSDC,29 ucscToRefSeq,24 xenoMrna,81 xenoMrna,105 xenoMrna,113 xenoMrna,423 xenoMrna,515 xenoMrna,528 xenoMrna,535 xenoRefGene,280 xenoRefGene,292 xenoRefGene,373 xenoRefGene,378 sequence-to-gene refSeqComposite,688 sequences blastHg18KG,64 microsat,26 microsat,124 nestedRepeats,34 nestedRepeats,42 refSeqComposite,32 refSeqComposite,113 refSeqComposite,271 refSeqComposite,287 refSeqComposite,891 refSeqComposite,1101 refSeqComposite,1666 refSeqComposite,1783 rmsk,24 rmsk,32 simpleRepeat,84 xenoMrna,118 xenoRefGene,34 xenoRefGene,351 sequencing chainMm10,901 chainNetMm10,904 cytoBandIdeo,9 gap,6 gc5BaseBw,10 gold,7 netMm10,901 ucscToINSDC,12 ucscToRefSeq,7 server ensGene,144 refSeqComposite,1334 refSeqComposite,1340 refSeqComposite,1356 refSeqComposite,1495 refSeqComposite,1610 refSeqComposite,1637 refSeqComposite,1689 refSeqComposite,1715 servers cpgIslandExt,539 cpgIslandExtUnmasked,542 cpgIslandSuper,539 ensGene,116 set blastHg18KG,150 gap,118 gap,128 refSeqComposite,162 refSeqComposite,1505 refSeqComposite,1642 refSeqComposite,1705 sets augustusGene,158 refSeqComposite,156 setting refSeqComposite,1045 refSeqComposite,1072 settings cpgIslandExt,213 cpgIslandExtUnmasked,216 cpgIslandSuper,213 refSeqComposite,750 several mrna,368 xenoMrna,441 sf blastHg18KG,158 shade nestedRepeats,194 shaded mrna,54 nestedRepeats,182 xenoMrna,57 shades nestedRepeats,202 shading nestedRepeats,240 refSeqComposite,612 rmsk,208 rmsk,239 xenoRefGene,61 shift refSeqComposite,966 shifted refSeqComposite,975 refSeqComposite,1022 short refSeqComposite,933 rmsk,153 shortgap refSeqComposite,969 shotgun gap,95 gap,138 gold,32 gold,151 should mrna,281 xenoMrna,354 show refSeqComposite,158 refSeqComposite,795 refSeqComposite,910 refSeqComposite,924 xenoRefGene,127 showing refSeqComposite,964 shown chainMm10,41 chainMm10,54 chainNetMm10,44 chainNetMm10,57 gold,103 microsat,48 mrna,99 netMm10,41 netMm10,54 xenoMrna,172 shows augustusGene,15 augustusGene,108 chainMm10,15 chainMm10,62 chainMm10,271 chainNetMm10,18 chainNetMm10,65 chainNetMm10,274 gc5BaseBw,16 genscan,13 gold,11 mrna,18 nestedRepeats,17 nestedRepeats,81 netMm10,15 netMm10,62 netMm10,271 refSeqComposite,18 refSeqComposite,1008 refSeqComposite,1019 xenoRefGene,15 side gap,52 signal augustusGene,48 augustusGene,63 signals genscan,34 genscan,187 significantly cpgIslandExt,156 cpgIslandExtUnmasked,159 cpgIslandSuper,156 signifies rmsk,258 similar nestedRepeats,199 simple microsat,57 microsat,85 rmsk,178 simpleRepeat,1 simpleRepeat,3 simpleRepeat,15 simultaneously chainMm10,103 chainNetMm10,106 netMm10,103 since chainMm10,582 chainNetMm10,585 netMm10,582 sine rmsk,157 single blastHg18KG,103 chainMm10,130 chainMm10,139 chainMm10,633 chainMm10,638 chainNetMm10,133 chainNetMm10,142 chainNetMm10,636 chainNetMm10,641 mrna,406 nestedRepeats,178 netMm10,130 netMm10,139 netMm10,633 netMm10,638 refSeqComposite,538 refSeqComposite,1256 xenoMrna,478 xenoRefGene,244 single-lined chainMm10,214 chainNetMm10,217 netMm10,214 site genscan,157 sites augustusGene,54 augustusGene,59 cpgIslandExt,34 cpgIslandExtUnmasked,37 cpgIslandSuper,34 refSeqComposite,273 size blastHg18KG,97 sizes gap,145 gold,56 skip refSeqComposite,1038 skipped refSeqComposite,1051 sm refSeqComposite,1760 xenoRefGene,328 small refSeqComposite,941 smallsize chainMm10,719 chainNetMm10,722 netMm10,719 smit chainMm10,956 chainMm10,1100 chainNetMm10,959 chainNetMm10,1103 nestedRepeats,306 nestedRepeats,324 nestedRepeats,371 nestedRepeats,395 netMm10,956 netMm10,1100 rmsk,17 rmsk,329 rmsk,347 rmsk,394 rmsk,418 snrna rmsk,192 so chainMm10,446 chainNetMm10,449 netMm10,446 refSeqComposite,303 refSeqComposite,1621 society refSeqComposite,1083 soft-masked rmsk,305 software nestedRepeats,255 refSeqComposite,378 some cpgIslandExt,134 cpgIslandExtUnmasked,137 cpgIslandSuper,134 mrna,107 nestedRepeats,207 refSeqComposite,664 refSeqComposite,712 rmsk,105 rmsk,268 xenoMrna,180 sometimes simpleRepeat,50 sort cpgIslandExt,483 cpgIslandExtUnmasked,486 cpgIslandSuper,483 sorted chainMm10,788 chainNetMm10,791 netMm10,788 source cpgIslandExt,555 cpgIslandExtUnmasked,558 cpgIslandSuper,555 refSeqComposite,1522 space mrna,219 xenoMrna,292 spaces gold,101 span chainMm10,405 chainNetMm10,408 netMm10,405 refSeqComposite,1010 specialized simpleRepeat,29 species augustusGene,166 augustusGene,173 augustusGene,181 augustusGene,186 augustusGene,200 augustusGene,229 augustusGene,244 chainMm10,120 chainMm10,175 chainMm10,194 chainMm10,907 chainNetMm10,123 chainNetMm10,178 chainNetMm10,197 chainNetMm10,910 netMm10,120 netMm10,175 netMm10,194 netMm10,907 species-specific augustusGene,156 specific mrna,146 simpleRepeat,53 xenoMrna,219 specify refSeqComposite,1118 speed refSeqComposite,1448 splice augustusGene,53 genscan,156 refSeqComposite,272 splicing augustusGene,123 genscan,33 genscan,186 split chainMm10,588 chainNetMm10,591 netMm10,588 spontaneous cpgIslandExt,109 cpgIslandExtUnmasked,112 cpgIslandSuper,109 squish nestedRepeats,159 src cpgIslandExt,564 cpgIslandExtUnmasked,567 cpgIslandSuper,564 srprna rmsk,194 staff refSeqComposite,647 refSeqComposite,698 stages cpgIslandExt,90 cpgIslandExtUnmasked,93 cpgIslandSuper,90 stanke augustusGene,103 augustusGene,251 augustusGene,284 augustusGene,286 augustusGene,316 start augustusGene,58 cpgIslandExt,33 cpgIslandExtUnmasked,36 cpgIslandSuper,33 refSeqComposite,1564 state chainMm10,933 chainMm10,1036 chainNetMm10,936 chainNetMm10,1039 netMm10,933 netMm10,1036 statistical augustusGene,47 stdin cpgIslandExt,415 cpgIslandExt,420 cpgIslandExtUnmasked,418 cpgIslandExtUnmasked,423 cpgIslandSuper,415 cpgIslandSuper,420 stdout cpgIslandExt,413 cpgIslandExt,417 cpgIslandExtUnmasked,416 cpgIslandExtUnmasked,420 cpgIslandSuper,413 cpgIslandSuper,417 refSeqComposite,1568 stefanie augustusGene,267 storage chainMm10,990 chainNetMm10,993 netMm10,990 stored refSeqComposite,1484 strand chainMm10,254 chainNetMm10,257 cpgIslandExt,80 cpgIslandExt,84 cpgIslandExtUnmasked,83 cpgIslandExtUnmasked,87 cpgIslandSuper,80 cpgIslandSuper,84 nestedRepeats,144 nestedRepeats,155 netMm10,254 xenoMrna,64 structure augustusGene,113 structures augustusGene,164 genscan,215 studying chainMm10,299 chainNetMm10,302 netMm10,299 subject refSeqComposite,682 refSeqComposite,707 submit refSeqComposite,119 submitted mrna,457 xenoMrna,530 submodel augustusGene,331 subsections chainMm10,654 chainNetMm10,657 netMm10,654 subset microsat,54 mrna,85 ncbiRefSeqCurated,7 ncbiRefSeqPredicted,7 refSeqComposite,213 refSeqComposite,343 refSeqComposite,519 refSeqComposite,524 refSeqComposite,555 refSeqComposite,557 refSeqComposite,587 refSeqComposite,799 xenoMrna,158 substantial chainMm10,171 chainNetMm10,174 netMm10,171 subtrack refSeqComposite,754 refSeqComposite,766 subtracks chainMm10,29 chainMm10,36 chainNetMm10,32 chainNetMm10,39 netMm10,29 netMm10,36 refSeqComposite,36 refSeqComposite,164 refSeqComposite,188 refSeqComposite,1404 subtracts refSeqComposite,180 such chainMm10,868 chainNetMm10,871 cpgIslandExt,65 cpgIslandExtUnmasked,68 cpgIslandSuper,65 netMm10,868 refSeqComposite,414 suggestions refSeqComposite,118 supercontig gap,99 gap,125 supercontigs gold,49 suppl augustusGene,336 supported gap,57 sure refSeqComposite,1104 symp chainMm10,1050 chainNetMm10,1053 netMm10,1050 syn chainMm10,529 chainNetMm10,532 netMm10,529 syntenic chainMm10,293 chainMm10,875 chainNetMm10,296 chainNetMm10,878 netMm10,293 netMm10,875 syntenically augustusGene,297 synteny chainMm10,32 chainNetMm10,35 netMm10,32 synthesized cpgIslandExt,78 cpgIslandExtUnmasked,81 cpgIslandSuper,78 system chainMm10,80 chainNetMm10,83 netMm10,80 refSeqComposite,1473 refSeqComposite,1532 systems chainMm10,90 chainNetMm10,93 netMm10,90 t cpgIslandExt,437 cpgIslandExt,439 cpgIslandExt,441 cpgIslandExt,444 cpgIslandExt,446 cpgIslandExt,448 cpgIslandExt,450 cpgIslandExt,452 cpgIslandExt,454 cpgIslandExtUnmasked,440 cpgIslandExtUnmasked,442 cpgIslandExtUnmasked,444 cpgIslandExtUnmasked,447 cpgIslandExtUnmasked,449 cpgIslandExtUnmasked,451 cpgIslandExtUnmasked,453 cpgIslandExtUnmasked,455 cpgIslandExtUnmasked,457 cpgIslandSuper,437 cpgIslandSuper,439 cpgIslandSuper,441 cpgIslandSuper,444 cpgIslandSuper,446 cpgIslandSuper,448 cpgIslandSuper,450 cpgIslandSuper,452 cpgIslandSuper,454 ensGene,169 ensGene,181 ensGene,187 refSeqComposite,1800 xenoRefGene,368 t-123-31-11491 chainMm10,687 chainNetMm10,690 netMm10,687 table augustusGene,225 cpgIslandExt,521 cpgIslandExtUnmasked,524 cpgIslandSuper,521 ensGene,66 mrna,171 mrna,174 mrna,193 refSeqComposite,1184 refSeqComposite,1318 refSeqComposite,1363 refSeqComposite,1580 xenoMrna,244 xenoMrna,247 xenoMrna,266 tables cpgIslandExt,511 cpgIslandExt,529 cpgIslandExtUnmasked,514 cpgIslandExtUnmasked,532 cpgIslandSuper,511 cpgIslandSuper,529 refSeqComposite,83 refSeqComposite,1324 refSeqComposite,1409 refSeqComposite,1438 tablesize chainMm10,717 chainNetMm10,720 netMm10,717 taken gap,148 refSeqComposite,26 xenoRefGene,28 tandem microsat,92 microsat,105 microsat,116 simpleRepeat,4 simpleRepeat,16 simpleRepeat,23 simpleRepeat,76 targeting refSeqComposite,588 task mrna,113 xenoMrna,186 tatusova refSeqComposite,1799 xenoRefGene,367 tblastn blastHg18KG,8 blastHg18KG,17 blastHg18KG,80 blastHg18KG,142 temperature augustusGene,141 ten rmsk,148 tend cpgIslandExt,68 cpgIslandExt,102 cpgIslandExtUnmasked,71 cpgIslandExtUnmasked,105 cpgIslandSuper,68 cpgIslandSuper,102 microsat,37 term mrna,120 xenoMrna,193 terminal rmsk,167 terminology refSeqComposite,1079 terms mrna,164 mrna,210 xenoMrna,237 xenoMrna,283 text mrna,127 mrna,167 mrna,207 xenoMrna,200 xenoMrna,240 xenoMrna,280 tgap chainMm10,745 chainNetMm10,748 netMm10,745 than blastHg18KG,110 chainMm10,85 chainMm10,518 chainNetMm10,88 chainNetMm10,521 cpgIslandExt,159 cpgIslandExt,270 cpgIslandExt,275 cpgIslandExtUnmasked,162 cpgIslandExtUnmasked,273 cpgIslandExtUnmasked,278 cpgIslandSuper,159 cpgIslandSuper,270 cpgIslandSuper,275 mrna,232 nestedRepeats,213 nestedRepeats,271 netMm10,85 netMm10,518 refSeqComposite,1250 xenoMrna,29 xenoMrna,305 xenoRefGene,24 xenoRefGene,238 thank ensGene,150 thanks augustusGene,248 genscan,170 nestedRepeats,303 rmsk,326 that blastHg18KG,65 blastHg18KG,120 chainMm10,20 chainMm10,45 chainMm10,81 chainMm10,143 chainMm10,169 chainMm10,377 chainMm10,404 chainMm10,426 chainMm10,578 chainMm10,838 chainMm10,849 chainNetMm10,23 chainNetMm10,48 chainNetMm10,84 chainNetMm10,146 chainNetMm10,172 chainNetMm10,380 chainNetMm10,407 chainNetMm10,429 chainNetMm10,581 chainNetMm10,841 chainNetMm10,852 cpgIslandExt,114 cpgIslandExt,178 cpgIslandExtUnmasked,117 cpgIslandExtUnmasked,181 cpgIslandSuper,114 cpgIslandSuper,178 genscan,141 gold,76 microsat,15 mrna,50 mrna,69 mrna,176 mrna,200 mrna,248 mrna,263 mrna,280 mrna,304 mrna,322 mrna,339 nestedRepeats,265 nestedRepeats,273 netMm10,20 netMm10,45 netMm10,81 netMm10,143 netMm10,169 netMm10,377 netMm10,404 netMm10,426 netMm10,578 netMm10,838 netMm10,849 refSeqComposite,152 refSeqComposite,172 refSeqComposite,217 refSeqComposite,347 refSeqComposite,390 refSeqComposite,828 refSeqComposite,938 refSeqComposite,1029 refSeqComposite,1037 refSeqComposite,1062 refSeqComposite,1105 refSeqComposite,1627 rmsk,42 rmsk,259 xenoMrna,53 xenoMrna,142 xenoMrna,249 xenoMrna,273 xenoMrna,321 xenoMrna,336 xenoMrna,353 xenoMrna,377 xenoMrna,395 xenoMrna,412 xenoRefGene,150 the augustusGene,20 augustusGene,25 augustusGene,30 augustusGene,38 augustusGene,61 augustusGene,69 augustusGene,81 augustusGene,109 augustusGene,143 augustusGene,165 augustusGene,172 augustusGene,177 augustusGene,185 augustusGene,240 augustusGene,250 augustusGene,255 augustusGene,258 augustusGene,261 augustusGene,272 augustusGene,275 blastHg18KG,20 blastHg18KG,23 blastHg18KG,30 blastHg18KG,37 blastHg18KG,41 blastHg18KG,49 blastHg18KG,53 blastHg18KG,61 blastHg18KG,73 blastHg18KG,79 blastHg18KG,83 blastHg18KG,102 blastHg18KG,113 blastHg18KG,125 blastHg18KG,133 blastHg18KG,146 blastHg18KG,187 chainMm10,18 chainMm10,37 chainMm10,59 chainMm10,71 chainMm10,121 chainMm10,134 chainMm10,151 chainMm10,158 chainMm10,206 chainMm10,211 chainMm10,237 chainMm10,247 chainMm10,252 chainMm10,260 chainMm10,268 chainMm10,272 chainMm10,283 chainMm10,302 chainMm10,311 chainMm10,325 chainMm10,340 chainMm10,346 chainMm10,349 chainMm10,364 chainMm10,370 chainMm10,374 chainMm10,394 chainMm10,400 chainMm10,414 chainMm10,432 chainMm10,449 chainMm10,452 chainMm10,457 chainMm10,470 chainMm10,483 chainMm10,485 chainMm10,492 chainMm10,495 chainMm10,502 chainMm10,508 chainMm10,521 chainMm10,532 chainMm10,536 chainMm10,539 chainMm10,547 chainMm10,551 chainMm10,557 chainMm10,568 chainMm10,571 chainMm10,583 chainMm10,592 chainMm10,594 chainMm10,602 chainMm10,608 chainMm10,617 chainMm10,620 chainMm10,652 chainMm10,657 chainMm10,666 chainMm10,670 chainMm10,677 chainMm10,700 chainMm10,708 chainMm10,778 chainMm10,782 chainMm10,790 chainMm10,794 chainMm10,798 chainMm10,806 chainMm10,851 chainMm10,861 chainMm10,880 chainMm10,883 chainMm10,895 chainMm10,919 chainMm10,961 chainMm10,967 chainMm10,985 chainMm10,992 chainMm10,1004 chainMm10,1013 chainMm10,1034 chainMm10,1074 chainNetMm10,21 chainNetMm10,40 chainNetMm10,62 chainNetMm10,74 chainNetMm10,124 chainNetMm10,137 chainNetMm10,154 chainNetMm10,161 chainNetMm10,209 chainNetMm10,214 chainNetMm10,240 chainNetMm10,250 chainNetMm10,255 chainNetMm10,263 chainNetMm10,271 chainNetMm10,275 chainNetMm10,286 chainNetMm10,305 chainNetMm10,314 chainNetMm10,328 chainNetMm10,343 chainNetMm10,349 chainNetMm10,352 chainNetMm10,367 chainNetMm10,373 chainNetMm10,377 chainNetMm10,397 chainNetMm10,403 chainNetMm10,417 chainNetMm10,435 chainNetMm10,452 chainNetMm10,455 chainNetMm10,460 chainNetMm10,473 chainNetMm10,486 chainNetMm10,488 chainNetMm10,495 chainNetMm10,498 chainNetMm10,505 chainNetMm10,511 chainNetMm10,524 chainNetMm10,535 chainNetMm10,539 chainNetMm10,542 chainNetMm10,550 chainNetMm10,554 chainNetMm10,560 chainNetMm10,571 chainNetMm10,574 chainNetMm10,586 chainNetMm10,595 chainNetMm10,597 chainNetMm10,605 chainNetMm10,611 chainNetMm10,620 chainNetMm10,623 chainNetMm10,655 chainNetMm10,660 chainNetMm10,669 chainNetMm10,673 chainNetMm10,680 chainNetMm10,703 chainNetMm10,711 chainNetMm10,781 chainNetMm10,785 chainNetMm10,793 chainNetMm10,797 chainNetMm10,801 chainNetMm10,809 chainNetMm10,854 chainNetMm10,864 chainNetMm10,883 chainNetMm10,886 chainNetMm10,898 chainNetMm10,922 chainNetMm10,964 chainNetMm10,970 chainNetMm10,988 chainNetMm10,995 chainNetMm10,1007 chainNetMm10,1016 chainNetMm10,1037 chainNetMm10,1077 cpgIslandExt,62 cpgIslandExt,76 cpgIslandExt,82 cpgIslandExt,88 cpgIslandExt,111 cpgIslandExt,142 cpgIslandExt,163 cpgIslandExt,168 cpgIslandExt,172 cpgIslandExt,190 cpgIslandExt,197 cpgIslandExt,201 cpgIslandExt,207 cpgIslandExt,211 cpgIslandExt,215 cpgIslandExt,219 cpgIslandExt,231 cpgIslandExt,259 cpgIslandExt,284 cpgIslandExt,288 cpgIslandExt,291 cpgIslandExt,298 cpgIslandExt,300 cpgIslandExt,310 cpgIslandExt,313 cpgIslandExt,317 cpgIslandExt,324 cpgIslandExt,332 cpgIslandExt,336 cpgIslandExt,342 cpgIslandExt,344 cpgIslandExt,348 cpgIslandExt,355 cpgIslandExt,359 cpgIslandExt,361 cpgIslandExt,372 cpgIslandExt,398 cpgIslandExt,401 cpgIslandExt,407 cpgIslandExt,490 cpgIslandExt,501 cpgIslandExt,517 cpgIslandExt,520 cpgIslandExt,524 cpgIslandExt,528 cpgIslandExt,554 cpgIslandExt,557 cpgIslandExt,567 cpgIslandExtUnmasked,65 cpgIslandExtUnmasked,79 cpgIslandExtUnmasked,85 cpgIslandExtUnmasked,91 cpgIslandExtUnmasked,114 cpgIslandExtUnmasked,145 cpgIslandExtUnmasked,166 cpgIslandExtUnmasked,171 cpgIslandExtUnmasked,175 cpgIslandExtUnmasked,193 cpgIslandExtUnmasked,200 cpgIslandExtUnmasked,204 cpgIslandExtUnmasked,210 cpgIslandExtUnmasked,214 cpgIslandExtUnmasked,218 cpgIslandExtUnmasked,222 cpgIslandExtUnmasked,234 cpgIslandExtUnmasked,262 cpgIslandExtUnmasked,287 cpgIslandExtUnmasked,291 cpgIslandExtUnmasked,294 cpgIslandExtUnmasked,301 cpgIslandExtUnmasked,303 cpgIslandExtUnmasked,313 cpgIslandExtUnmasked,316 cpgIslandExtUnmasked,320 cpgIslandExtUnmasked,327 cpgIslandExtUnmasked,335 cpgIslandExtUnmasked,339 cpgIslandExtUnmasked,345 cpgIslandExtUnmasked,347 cpgIslandExtUnmasked,351 cpgIslandExtUnmasked,358 cpgIslandExtUnmasked,362 cpgIslandExtUnmasked,364 cpgIslandExtUnmasked,375 cpgIslandExtUnmasked,401 cpgIslandExtUnmasked,404 cpgIslandExtUnmasked,410 cpgIslandExtUnmasked,493 cpgIslandExtUnmasked,504 cpgIslandExtUnmasked,520 cpgIslandExtUnmasked,523 cpgIslandExtUnmasked,527 cpgIslandExtUnmasked,531 cpgIslandExtUnmasked,557 cpgIslandExtUnmasked,560 cpgIslandExtUnmasked,570 cpgIslandSuper,62 cpgIslandSuper,76 cpgIslandSuper,82 cpgIslandSuper,88 cpgIslandSuper,111 cpgIslandSuper,142 cpgIslandSuper,163 cpgIslandSuper,168 cpgIslandSuper,172 cpgIslandSuper,190 cpgIslandSuper,197 cpgIslandSuper,201 cpgIslandSuper,207 cpgIslandSuper,211 cpgIslandSuper,215 cpgIslandSuper,219 cpgIslandSuper,231 cpgIslandSuper,259 cpgIslandSuper,284 cpgIslandSuper,288 cpgIslandSuper,291 cpgIslandSuper,298 cpgIslandSuper,300 cpgIslandSuper,310 cpgIslandSuper,313 cpgIslandSuper,317 cpgIslandSuper,324 cpgIslandSuper,332 cpgIslandSuper,336 cpgIslandSuper,342 cpgIslandSuper,344 cpgIslandSuper,348 cpgIslandSuper,355 cpgIslandSuper,359 cpgIslandSuper,361 cpgIslandSuper,372 cpgIslandSuper,398 cpgIslandSuper,401 cpgIslandSuper,407 cpgIslandSuper,490 cpgIslandSuper,501 cpgIslandSuper,517 cpgIslandSuper,520 cpgIslandSuper,524 cpgIslandSuper,528 cpgIslandSuper,554 cpgIslandSuper,557 cpgIslandSuper,567 ensGene,21 ensGene,34 ensGene,51 ensGene,65 ensGene,69 ensGene,75 ensGene,101 ensGene,107 ensGene,190 gap,13 gap,27 gap,42 gap,48 gap,54 gap,74 gap,78 gap,83 gap,92 gap,109 gap,135 gc5BaseBw,12 gc5BaseBw,17 gc5BaseBw,53 gc5BaseBw,57 gc5BaseBw,68 gc5BaseBw,72 genscan,16 genscan,23 genscan,38 genscan,53 genscan,68 genscan,75 genscan,80 genscan,91 genscan,115 genscan,135 genscan,139 genscan,151 genscan,155 genscan,176 gold,12 gold,26 gold,51 gold,74 gold,79 gold,88 gold,105 gold,110 gold,116 gold,130 gold,135 microsat,43 microsat,46 microsat,56 microsat,82 microsat,84 microsat,91 mrna,15 mrna,28 mrna,37 mrna,48 mrna,60 mrna,75 mrna,79 mrna,89 mrna,101 mrna,111 mrna,116 mrna,126 mrna,131 mrna,138 mrna,149 mrna,152 mrna,155 mrna,160 mrna,170 mrna,173 mrna,179 mrna,189 mrna,196 mrna,205 mrna,226 mrna,236 mrna,268 mrna,275 mrna,289 mrna,298 mrna,306 mrna,315 mrna,324 mrna,341 mrna,348 mrna,359 mrna,382 mrna,398 mrna,401 mrna,412 mrna,415 mrna,431 mrna,440 mrna,446 mrna,459 mrna,525 nestedRepeats,25 nestedRepeats,28 nestedRepeats,44 nestedRepeats,51 nestedRepeats,65 nestedRepeats,69 nestedRepeats,76 nestedRepeats,100 nestedRepeats,105 nestedRepeats,134 nestedRepeats,142 nestedRepeats,149 nestedRepeats,154 nestedRepeats,185 nestedRepeats,193 nestedRepeats,201 nestedRepeats,215 nestedRepeats,220 nestedRepeats,235 nestedRepeats,242 nestedRepeats,248 nestedRepeats,253 nestedRepeats,278 nestedRepeats,284 nestedRepeats,297 nestedRepeats,313 nestedRepeats,397 nestedRepeats,403 netMm10,18 netMm10,37 netMm10,59 netMm10,71 netMm10,121 netMm10,134 netMm10,151 netMm10,158 netMm10,206 netMm10,211 netMm10,237 netMm10,247 netMm10,252 netMm10,260 netMm10,268 netMm10,272 netMm10,283 netMm10,302 netMm10,311 netMm10,325 netMm10,340 netMm10,346 netMm10,349 netMm10,364 netMm10,370 netMm10,374 netMm10,394 netMm10,400 netMm10,414 netMm10,432 netMm10,449 netMm10,452 netMm10,457 netMm10,470 netMm10,483 netMm10,485 netMm10,492 netMm10,495 netMm10,502 netMm10,508 netMm10,521 netMm10,532 netMm10,536 netMm10,539 netMm10,547 netMm10,551 netMm10,557 netMm10,568 netMm10,571 netMm10,583 netMm10,592 netMm10,594 netMm10,602 netMm10,608 netMm10,617 netMm10,620 netMm10,652 netMm10,657 netMm10,666 netMm10,670 netMm10,677 netMm10,700 netMm10,708 netMm10,778 netMm10,782 netMm10,790 netMm10,794 netMm10,798 netMm10,806 netMm10,851 netMm10,861 netMm10,880 netMm10,883 netMm10,895 netMm10,919 netMm10,961 netMm10,967 netMm10,985 netMm10,992 netMm10,1004 netMm10,1013 netMm10,1034 netMm10,1074 refSeqComposite,12 refSeqComposite,28 refSeqComposite,44 refSeqComposite,53 refSeqComposite,57 refSeqComposite,67 refSeqComposite,91 refSeqComposite,99 refSeqComposite,134 refSeqComposite,166 refSeqComposite,170 refSeqComposite,186 refSeqComposite,241 refSeqComposite,282 refSeqComposite,285 refSeqComposite,291 refSeqComposite,308 refSeqComposite,314 refSeqComposite,326 refSeqComposite,334 refSeqComposite,370 refSeqComposite,374 refSeqComposite,387 refSeqComposite,394 refSeqComposite,399 refSeqComposite,403 refSeqComposite,442 refSeqComposite,449 refSeqComposite,453 refSeqComposite,465 refSeqComposite,500 refSeqComposite,511 refSeqComposite,533 refSeqComposite,564 refSeqComposite,575 refSeqComposite,583 refSeqComposite,591 refSeqComposite,603 refSeqComposite,610 refSeqComposite,614 refSeqComposite,618 refSeqComposite,639 refSeqComposite,652 refSeqComposite,662 refSeqComposite,675 refSeqComposite,686 refSeqComposite,700 refSeqComposite,715 refSeqComposite,720 refSeqComposite,736 refSeqComposite,740 refSeqComposite,743 refSeqComposite,749 refSeqComposite,756 refSeqComposite,761 refSeqComposite,765 refSeqComposite,778 refSeqComposite,784 refSeqComposite,792 refSeqComposite,804 refSeqComposite,815 refSeqComposite,843 refSeqComposite,848 refSeqComposite,863 refSeqComposite,872 refSeqComposite,883 refSeqComposite,888 refSeqComposite,892 refSeqComposite,911 refSeqComposite,917 refSeqComposite,925 refSeqComposite,931 refSeqComposite,981 refSeqComposite,1005 refSeqComposite,1009 refSeqComposite,1012 refSeqComposite,1016 refSeqComposite,1020 refSeqComposite,1055 refSeqComposite,1067 refSeqComposite,1114 refSeqComposite,1119 refSeqComposite,1125 refSeqComposite,1134 refSeqComposite,1148 refSeqComposite,1163 refSeqComposite,1180 refSeqComposite,1189 refSeqComposite,1194 refSeqComposite,1202 refSeqComposite,1216 refSeqComposite,1224 refSeqComposite,1237 refSeqComposite,1262 refSeqComposite,1265 refSeqComposite,1281 refSeqComposite,1290 refSeqComposite,1297 refSeqComposite,1315 refSeqComposite,1323 refSeqComposite,1344 refSeqComposite,1351 refSeqComposite,1372 refSeqComposite,1375 refSeqComposite,1392 refSeqComposite,1402 refSeqComposite,1431 refSeqComposite,1454 refSeqComposite,1470 refSeqComposite,1475 refSeqComposite,1478 refSeqComposite,1503 refSeqComposite,1521 refSeqComposite,1534 refSeqComposite,1552 refSeqComposite,1577 refSeqComposite,1582 refSeqComposite,1586 refSeqComposite,1598 refSeqComposite,1603 refSeqComposite,1607 refSeqComposite,1611 refSeqComposite,1617 refSeqComposite,1649 refSeqComposite,1654 refSeqComposite,1657 refSeqComposite,1664 refSeqComposite,1674 refSeqComposite,1703 refSeqComposite,1732 refSeqComposite,1740 rmsk,33 rmsk,40 rmsk,46 rmsk,60 rmsk,66 rmsk,75 rmsk,80 rmsk,87 rmsk,101 rmsk,118 rmsk,204 rmsk,210 rmsk,214 rmsk,229 rmsk,231 rmsk,236 rmsk,238 rmsk,244 rmsk,247 rmsk,260 rmsk,265 rmsk,271 rmsk,274 rmsk,281 rmsk,291 rmsk,320 rmsk,336 rmsk,420 rmsk,426 simpleRepeat,60 ucscToINSDC,26 ucscToINSDC,33 ucscToINSDC,38 ucscToINSDC,43 ucscToRefSeq,21 ucscToRefSeq,27 ucscToRefSeq,32 ucscToRefSeq,37 xenoMrna,40 xenoMrna,51 xenoMrna,63 xenoMrna,73 xenoMrna,76 xenoMrna,79 xenoMrna,86 xenoMrna,94 xenoMrna,98 xenoMrna,101 xenoMrna,107 xenoMrna,125 xenoMrna,130 xenoMrna,133 xenoMrna,148 xenoMrna,152 xenoMrna,162 xenoMrna,174 xenoMrna,184 xenoMrna,189 xenoMrna,199 xenoMrna,204 xenoMrna,211 xenoMrna,222 xenoMrna,225 xenoMrna,228 xenoMrna,233 xenoMrna,243 xenoMrna,246 xenoMrna,252 xenoMrna,262 xenoMrna,269 xenoMrna,278 xenoMrna,299 xenoMrna,309 xenoMrna,341 xenoMrna,348 xenoMrna,362 xenoMrna,371 xenoMrna,379 xenoMrna,388 xenoMrna,397 xenoMrna,414 xenoMrna,421 xenoMrna,432 xenoMrna,455 xenoMrna,463 xenoMrna,468 xenoMrna,484 xenoMrna,487 xenoMrna,504 xenoMrna,513 xenoMrna,519 xenoMrna,532 xenoMrna,598 xenoRefGene,30 xenoRefGene,37 xenoRefGene,52 xenoRefGene,59 xenoRefGene,63 xenoRefGene,67 xenoRefGene,78 xenoRefGene,93 xenoRefGene,96 xenoRefGene,99 xenoRefGene,113 xenoRefGene,119 xenoRefGene,124 xenoRefGene,129 xenoRefGene,137 xenoRefGene,165 xenoRefGene,170 xenoRefGene,185 xenoRefGene,200 xenoRefGene,213 xenoRefGene,220 xenoRefGene,225 xenoRefGene,250 xenoRefGene,253 xenoRefGene,269 xenoRefGene,278 xenoRefGene,301 their nestedRepeats,190 them chainMm10,813 chainNetMm10,816 cpgIslandExt,126 cpgIslandExtUnmasked,129 cpgIslandSuper,126 netMm10,813 rmsk,318 then chainMm10,663 chainMm10,802 chainMm10,887 chainNetMm10,666 chainNetMm10,805 chainNetMm10,890 cpgIslandExt,256 cpgIslandExtUnmasked,259 cpgIslandSuper,256 nestedRepeats,232 netMm10,663 netMm10,802 netMm10,887 there cpgIslandExt,120 cpgIslandExtUnmasked,123 cpgIslandSuper,120 xenoMrna,119 therefore gold,124 refSeqComposite,1640 these augustusGene,95 augustusGene,190 chainMm10,52 chainMm10,104 chainMm10,419 chainMm10,675 chainNetMm10,55 chainNetMm10,107 chainNetMm10,422 chainNetMm10,678 ensGene,10 ensGene,154 gap,100 microsat,24 nestedRepeats,262 nestedRepeats,266 netMm10,52 netMm10,104 netMm10,419 netMm10,675 refSeqComposite,323 refSeqComposite,333 refSeqComposite,801 refSeqComposite,1301 refSeqComposite,1437 rmsk,235 simpleRepeat,33 thesis chainMm10,1033 chainNetMm10,1036 netMm10,1033 they chainMm10,336 chainNetMm10,339 netMm10,336 refSeqComposite,249 refSeqComposite,293 refSeqComposite,358 refSeqComposite,420 thibaud-nissen refSeqComposite,1761 xenoRefGene,329 thick chainMm10,43 chainNetMm10,46 netMm10,43 refSeqComposite,1001 refSeqComposite,1017 thin refSeqComposite,999 refSeqComposite,1006 this augustusGene,13 augustusGene,106 augustusGene,224 blastHg18KG,14 blastHg18KG,193 chainMm10,13 chainMm10,176 chainMm10,307 chainMm10,406 chainMm10,706 chainMm10,828 chainNetMm10,16 chainNetMm10,179 chainNetMm10,310 chainNetMm10,409 chainNetMm10,709 chainNetMm10,831 cpgIslandExt,72 cpgIslandExt,222 cpgIslandExt,585 cpgIslandExtUnmasked,75 cpgIslandExtUnmasked,225 cpgIslandExtUnmasked,588 cpgIslandSuper,72 cpgIslandSuper,222 cpgIslandSuper,585 ensGene,119 ensGene,135 gap,8 gap,39 gap,80 gap,112 gc5BaseBw,38 gc5BaseBw,77 genscan,11 genscan,65 genscan,128 gold,9 gold,71 gold,140 microsat,11 microsat,50 microsat,99 mrna,34 mrna,64 mrna,91 mrna,327 mrna,355 nestedRepeats,15 nestedRepeats,79 nestedRepeats,321 netMm10,13 netMm10,176 netMm10,307 netMm10,406 netMm10,706 netMm10,828 refSeqComposite,59 refSeqComposite,146 refSeqComposite,505 refSeqComposite,569 refSeqComposite,730 refSeqComposite,820 refSeqComposite,859 refSeqComposite,1395 refSeqComposite,1443 refSeqComposite,1631 refSeqComposite,1717 rmsk,10 rmsk,51 rmsk,143 rmsk,344 simpleRepeat,12 simpleRepeat,31 ucscToINSDC,14 ucscToINSDC,46 ucscToRefSeq,9 ucscToRefSeq,40 xenoMrna,13 xenoMrna,37 xenoMrna,67 xenoMrna,137 xenoMrna,164 xenoMrna,400 xenoMrna,428 xenoRefGene,13 xenoRefGene,40 xenoRefGene,49 xenoRefGene,87 xenoRefGene,142 xenoRefGene,181 xenoRefGene,217 xenoRefGene,284 those microsat,62 mrna,320 nestedRepeats,272 refSeqComposite,220 refSeqComposite,349 refSeqComposite,1244 xenoMrna,393 xenoMrna,494 xenoRefGene,232 thousands chainMm10,258 chainNetMm10,261 netMm10,258 through gap,73 nestedRepeats,97 refSeqComposite,735 refSeqComposite,1330 refSeqComposite,1368 rmsk,309 xenoRefGene,92 time chainMm10,811 chainNetMm10,814 cpgIslandExt,99 cpgIslandExt,237 cpgIslandExtUnmasked,102 cpgIslandExtUnmasked,240 cpgIslandSuper,99 cpgIslandSuper,237 netMm10,811 tissue mrna,156 mrna,191 mrna,206 xenoMrna,229 xenoMrna,264 xenoMrna,279 tissues mrna,199 xenoMrna,272 to augustusGene,115 augustusGene,170 augustusGene,249 augustusGene,301 blastHg18KG,56 blastHg18KG,191 chainMm10,23 chainMm10,70 chainMm10,147 chainMm10,219 chainMm10,231 chainMm10,327 chainMm10,338 chainMm10,343 chainMm10,355 chainMm10,361 chainMm10,384 chainMm10,465 chainMm10,479 chainMm10,563 chainMm10,668 chainMm10,804 chainMm10,816 chainMm10,856 chainMm10,879 chainMm10,889 chainNetMm10,26 chainNetMm10,73 chainNetMm10,150 chainNetMm10,222 chainNetMm10,234 chainNetMm10,330 chainNetMm10,341 chainNetMm10,346 chainNetMm10,358 chainNetMm10,364 chainNetMm10,387 chainNetMm10,468 chainNetMm10,482 chainNetMm10,566 chainNetMm10,671 chainNetMm10,807 chainNetMm10,819 chainNetMm10,859 chainNetMm10,882 chainNetMm10,892 cpgIslandExt,69 cpgIslandExt,103 cpgIslandExt,124 cpgIslandExt,139 cpgIslandExt,205 cpgIslandExt,283 cpgIslandExt,358 cpgIslandExt,365 cpgIslandExt,371 cpgIslandExtUnmasked,72 cpgIslandExtUnmasked,106 cpgIslandExtUnmasked,127 cpgIslandExtUnmasked,142 cpgIslandExtUnmasked,208 cpgIslandExtUnmasked,286 cpgIslandExtUnmasked,361 cpgIslandExtUnmasked,368 cpgIslandExtUnmasked,374 cpgIslandSuper,69 cpgIslandSuper,103 cpgIslandSuper,124 cpgIslandSuper,139 cpgIslandSuper,205 cpgIslandSuper,283 cpgIslandSuper,358 cpgIslandSuper,365 cpgIslandSuper,371 ensGene,43 ensGene,149 gc5BaseBw,48 genscan,95 genscan,105 genscan,114 genscan,145 genscan,171 gold,133 microsat,18 microsat,38 microsat,121 mrna,73 mrna,110 mrna,114 mrna,129 mrna,136 mrna,140 mrna,158 mrna,178 mrna,185 mrna,284 mrna,333 mrna,343 mrna,358 mrna,381 mrna,458 nestedRepeats,148 nestedRepeats,152 nestedRepeats,174 nestedRepeats,184 nestedRepeats,200 nestedRepeats,225 nestedRepeats,234 nestedRepeats,260 nestedRepeats,304 nestedRepeats,319 netMm10,23 netMm10,70 netMm10,147 netMm10,219 netMm10,231 netMm10,327 netMm10,338 netMm10,343 netMm10,355 netMm10,361 netMm10,384 netMm10,465 netMm10,479 netMm10,563 netMm10,668 netMm10,804 netMm10,816 netMm10,856 netMm10,879 netMm10,889 refSeqComposite,56 refSeqComposite,116 refSeqComposite,157 refSeqComposite,169 refSeqComposite,175 refSeqComposite,307 refSeqComposite,310 refSeqComposite,325 refSeqComposite,369 refSeqComposite,441 refSeqComposite,499 refSeqComposite,683 refSeqComposite,708 refSeqComposite,747 refSeqComposite,760 refSeqComposite,782 refSeqComposite,831 refSeqComposite,838 refSeqComposite,862 refSeqComposite,909 refSeqComposite,915 refSeqComposite,923 refSeqComposite,929 refSeqComposite,942 refSeqComposite,984 refSeqComposite,1033 refSeqComposite,1066 refSeqComposite,1102 refSeqComposite,1113 refSeqComposite,1179 refSeqComposite,1447 refSeqComposite,1541 refSeqComposite,1594 refSeqComposite,1693 rmsk,147 rmsk,315 rmsk,327 rmsk,342 simpleRepeat,81 ucscToINSDC,22 ucscToRefSeq,17 xenoMrna,91 xenoMrna,146 xenoMrna,183 xenoMrna,187 xenoMrna,202 xenoMrna,209 xenoMrna,213 xenoMrna,231 xenoMrna,251 xenoMrna,258 xenoMrna,357 xenoMrna,406 xenoMrna,416 xenoMrna,431 xenoMrna,454 xenoMrna,531 xenoRefGene,117 xenoRefGene,153 xenoRefGene,160 xenoRefGene,184 xenoRefGene,210 together blastHg18KG,91 chainMm10,127 chainNetMm10,130 netMm10,127 tolerate chainMm10,94 chainNetMm10,97 netMm10,94 too refSeqComposite,940 tool blastHg18KG,149 blastHg18KG,171 mrna,528 refSeqComposite,1514 refSeqComposite,1743 xenoMrna,601 xenoRefGene,311 tools nestedRepeats,314 rmsk,337 top chainMm10,520 chainNetMm10,523 cpgIslandExt,220 cpgIslandExtUnmasked,223 cpgIslandSuper,220 netMm10,520 refSeqComposite,741 xenoRefGene,97 top-level chainMm10,395 chainMm10,415 chainNetMm10,398 chainNetMm10,418 netMm10,395 netMm10,415 track augustusGene,14 augustusGene,107 blastHg18KG,15 blastHg18KG,34 blastHg18KG,45 blastHg18KG,194 chainMm10,14 chainMm10,58 chainMm10,61 chainMm10,123 chainMm10,267 chainMm10,270 chainMm10,322 chainMm10,357 chainMm10,389 chainMm10,576 chainMm10,707 chainMm10,770 chainNetMm10,17 chainNetMm10,61 chainNetMm10,64 chainNetMm10,126 chainNetMm10,270 chainNetMm10,273 chainNetMm10,325 chainNetMm10,360 chainNetMm10,392 chainNetMm10,579 chainNetMm10,710 chainNetMm10,773 cpgIslandExt,173 cpgIslandExt,202 cpgIslandExt,216 cpgIslandExt,314 cpgIslandExt,318 cpgIslandExt,402 cpgIslandExt,492 cpgIslandExt,586 cpgIslandExtUnmasked,176 cpgIslandExtUnmasked,205 cpgIslandExtUnmasked,219 cpgIslandExtUnmasked,317 cpgIslandExtUnmasked,321 cpgIslandExtUnmasked,405 cpgIslandExtUnmasked,495 cpgIslandExtUnmasked,589 cpgIslandSuper,173 cpgIslandSuper,202 cpgIslandSuper,216 cpgIslandSuper,314 cpgIslandSuper,318 cpgIslandSuper,402 cpgIslandSuper,492 cpgIslandSuper,586 ensGene,136 gap,9 gap,40 gc5BaseBw,15 gc5BaseBw,39 genscan,12 genscan,66 genscan,76 genscan,87 gold,10 gold,72 gold,141 microsat,12 microsat,51 microsat,59 microsat,87 mrna,17 mrna,35 mrna,65 mrna,90 mrna,102 mrna,328 mrna,448 nestedRepeats,16 nestedRepeats,78 nestedRepeats,80 nestedRepeats,322 netMm10,14 netMm10,58 netMm10,61 netMm10,123 netMm10,267 netMm10,270 netMm10,322 netMm10,357 netMm10,389 netMm10,576 netMm10,707 netMm10,770 refSeqComposite,17 refSeqComposite,47 refSeqComposite,147 refSeqComposite,151 refSeqComposite,313 refSeqComposite,317 refSeqComposite,330 refSeqComposite,337 refSeqComposite,476 refSeqComposite,506 refSeqComposite,516 refSeqComposite,570 refSeqComposite,731 refSeqComposite,744 refSeqComposite,762 refSeqComposite,821 refSeqComposite,850 refSeqComposite,875 refSeqComposite,1205 refSeqComposite,1220 refSeqComposite,1346 refSeqComposite,1718 rmsk,11 rmsk,52 rmsk,144 rmsk,345 simpleRepeat,13 ucscToINSDC,15 ucscToINSDC,47 ucscToRefSeq,10 ucscToRefSeq,41 xenoMrna,14 xenoMrna,38 xenoMrna,68 xenoMrna,138 xenoMrna,163 xenoMrna,175 xenoMrna,401 xenoMrna,521 xenoRefGene,14 xenoRefGene,41 xenoRefGene,50 xenoRefGene,88 xenoRefGene,100 xenoRefGene,143 xenoRefGene,172 xenoRefGene,285 tracks augustusGene,41 chainMm10,784 chainNetMm10,787 ensGene,24 genscan,56 genscan,74 mrna,43 mrna,366 netMm10,784 refSeqComposite,101 refSeqComposite,137 refSeqComposite,171 refSeqComposite,406 refSeqComposite,458 refSeqComposite,601 refSeqComposite,609 refSeqComposite,1145 refSeqComposite,1155 refSeqComposite,1231 refSeqComposite,1302 refSeqComposite,1381 refSeqComposite,1482 refSeqComposite,1589 refSeqComposite,1682 refSeqComposite,1707 xenoMrna,46 xenoMrna,439 xenoRefGene,58 traditional chainMm10,86 chainNetMm10,89 netMm10,86 trained augustusGene,150 training augustusGene,162 augustusGene,176 augustusGene,180 augustusGene,199 augustusGene,228 augustusGene,243 augustusGene,259 augustusGene,273 transcribed refSeqComposite,432 transcript refSeqComposite,540 refSeqComposite,890 refSeqComposite,918 refSeqComposite,926 refSeqComposite,997 refSeqComposite,1040 refSeqComposite,1061 refSeqComposite,1126 refSeqComposite,1136 transcription cpgIslandExt,32 cpgIslandExtUnmasked,35 cpgIslandSuper,32 transcriptional genscan,28 transcripts augustusGene,124 refSeqComposite,257 refSeqComposite,324 refSeqComposite,475 refSeqComposite,528 refSeqComposite,561 refSeqComposite,1814 xenoRefGene,382 translated xenoMrna,16 xenoMrna,83 xenoMrna,103 xenoMrna,474 translation augustusGene,57 translational genscan,29 transposable nestedRepeats,379 rmsk,402 transposons chainMm10,577 chainMm10,603 chainMm10,914 chainNetMm10,580 chainNetMm10,606 chainNetMm10,917 netMm10,577 netMm10,603 netMm10,914 trends nestedRepeats,353 rmsk,376 trf simpleRepeat,7 simpleRepeat,26 simpleRepeat,61 simpleRepeat,67 tri-nucleotide microsat,5 microsat,34 trimming chainMm10,812 chainNetMm10,815 netMm10,812 trna rmsk,190 true augustusGene,132 ts cpgIslandExt,106 cpgIslandExtUnmasked,109 cpgIslandSuper,106 turn chainMm10,344 chainNetMm10,347 cpgIslandExt,104 cpgIslandExtUnmasked,107 cpgIslandSuper,104 netMm10,344 refSeqComposite,813 xenoRefGene,135 twice cpgIslandExt,354 cpgIslandExtUnmasked,357 cpgIslandSuper,354 two chainMm10,920 chainNetMm10,923 netMm10,920 xenoMrna,71 xenoMrna,108 twobittofa cpgIslandExt,411 cpgIslandExt,497 cpgIslandExt,502 cpgIslandExtUnmasked,414 cpgIslandExtUnmasked,500 cpgIslandExtUnmasked,505 cpgIslandSuper,411 cpgIslandSuper,497 cpgIslandSuper,502 type gold,145 mrna,118 mrna,148 xenoMrna,191 xenoMrna,221 types augustusGene,89 chainMm10,516 chainNetMm10,519 gap,86 mrna,197 mrna,369 netMm10,516 refSeqComposite,879 refSeqComposite,894 xenoMrna,270 xenoMrna,442 typical cpgIslandExt,161 cpgIslandExtUnmasked,164 cpgIslandSuper,161 refSeqComposite,431 typically cpgIslandExt,29 cpgIslandExtUnmasked,32 cpgIslandSuper,29 gc5BaseBw,33 u chainMm10,1083 chainNetMm10,1086 netMm10,1083 ucsc blastHg18KG,32 blastHg18KG,43 mrna,452 nestedRepeats,245 refSeqComposite,45 refSeqComposite,49 refSeqComposite,72 refSeqComposite,194 refSeqComposite,335 refSeqComposite,483 refSeqComposite,489 refSeqComposite,599 refSeqComposite,1159 refSeqComposite,1209 refSeqComposite,1217 refSeqComposite,1423 refSeqComposite,1608 refSeqComposite,1722 ucscToINSDC,17 ucscToRefSeq,12 xenoMrna,525 xenoRefGene,289 unambiguously refSeqComposite,1116 uncheck refSeqComposite,165 undergone refSeqComposite,622 xenoRefGene,71 underlies genscan,142 underlying xenoRefGene,39 underneath chainMm10,848 chainNetMm10,851 netMm10,848 ungapped chainMm10,455 chainNetMm10,458 netMm10,455 university chainMm10,934 chainMm10,968 chainMm10,1014 chainMm10,1037 chainNetMm10,937 chainNetMm10,971 chainNetMm10,1017 chainNetMm10,1040 netMm10,934 netMm10,968 netMm10,1014 netMm10,1037 unknown rmsk,203 unless cpgIslandExt,119 cpgIslandExtUnmasked,122 cpgIslandSuper,119 nestedRepeats,206 unmasked cpgIslandExt,169 cpgIslandExt,208 cpgIslandExt,315 cpgIslandExt,491 cpgIslandExtUnmasked,1 cpgIslandExtUnmasked,172 cpgIslandExtUnmasked,211 cpgIslandExtUnmasked,318 cpgIslandExtUnmasked,494 cpgIslandSuper,169 cpgIslandSuper,208 cpgIslandSuper,315 cpgIslandSuper,491 unprocessed chainMm10,234 chainNetMm10,237 netMm10,234 unpublished cpgIslandExt,602 cpgIslandExtUnmasked,605 cpgIslandSuper,602 unsequenced chainMm10,190 chainNetMm10,193 netMm10,190 unsure rmsk,263 untranscribed refSeqComposite,409 up blastHg18KG,67 gold,78 refSeqComposite,1449 refSeqComposite,1643 rmsk,146 update mrna,507 nestedRepeats,46 nestedRepeats,58 nestedRepeats,336 nestedRepeats,343 refSeqComposite,1779 rmsk,82 rmsk,94 rmsk,359 rmsk,366 xenoMrna,580 xenoRefGene,347 updated xenoRefGene,43 use gold,89 mrna,115 refSeqComposite,37 refSeqComposite,1551 xenoMrna,188 used augustusGene,146 augustusGene,174 augustusGene,183 augustusGene,231 augustusGene,246 blastHg18KG,190 chainMm10,305 chainMm10,681 chainMm10,712 chainMm10,803 chainMm10,855 chainMm10,888 chainNetMm10,308 chainNetMm10,684 chainNetMm10,715 chainNetMm10,806 chainNetMm10,858 chainNetMm10,891 cpgIslandExt,308 cpgIslandExtUnmasked,311 cpgIslandSuper,308 ensGene,36 genscan,159 mrna,72 mrna,224 mrna,283 nestedRepeats,247 nestedRepeats,292 nestedRepeats,318 netMm10,305 netMm10,681 netMm10,712 netMm10,803 netMm10,855 netMm10,888 refSeqComposite,235 refSeqComposite,245 refSeqComposite,1004 rmsk,299 rmsk,341 xenoMrna,145 xenoMrna,297 xenoMrna,356 useful chainMm10,290 chainMm10,489 chainNetMm10,293 chainNetMm10,492 microsat,20 netMm10,290 netMm10,489 user mrna,342 xenoMrna,415 users refSeqComposite,830 xenoRefGene,152 uses rmsk,79 using augustusGene,294 blastHg18KG,52 blastHg18KG,78 blastHg18KG,92 chainMm10,76 chainMm10,616 chainMm10,777 chainNetMm10,79 chainNetMm10,619 chainNetMm10,780 cpgIslandExt,516 cpgIslandExt,589 cpgIslandExtUnmasked,519 cpgIslandExtUnmasked,592 cpgIslandSuper,516 cpgIslandSuper,589 ensGene,64 gap,140 microsat,90 mrna,400 nestedRepeats,43 nestedRepeats,104 nestedRepeats,283 netMm10,76 netMm10,616 netMm10,777 refSeqComposite,80 refSeqComposite,1160 refSeqComposite,1210 refSeqComposite,1223 refSeqComposite,1242 refSeqComposite,1314 refSeqComposite,1512 refSeqComposite,1597 refSeqComposite,1628 rmsk,15 rmsk,290 xenoMrna,473 xenoRefGene,230 usually gap,147 nestedRepeats,192 utilities blastHg18KG,189 refSeqComposite,1535 refSeqComposite,1604 utility refSeqComposite,1600 refSeqComposite,1612 utils cpgIslandExt,565 cpgIslandExtUnmasked,568 cpgIslandSuper,565 v ensGene,185 v3.1 augustusGene,7 valid mrna,163 xenoMrna,236 validate refSeqComposite,833 xenoRefGene,155 validation genscan,107 value mrna,234 xenoMrna,307 variants refSeqComposite,955 variation microsat,7 nestedRepeats,11 refSeqComposite,1082 rmsk,6 simpleRepeat,8 variety gc5BaseBw,45 varying gap,104 vb chainMm10,1041 chainNetMm10,1044 netMm10,1041 version augustusGene,23 augustusGene,263 cpgIslandExt,170 cpgIslandExt,193 cpgIslandExt,199 cpgIslandExt,209 cpgIslandExtUnmasked,173 cpgIslandExtUnmasked,196 cpgIslandExtUnmasked,202 cpgIslandExtUnmasked,212 cpgIslandSuper,170 cpgIslandSuper,193 cpgIslandSuper,199 cpgIslandSuper,209 refSeqComposite,1139 refSeqComposite,1575 rmsk,58 versions augustusGene,279 ensGene,133 nestedRepeats,251 nestedRepeats,267 refSeqComposite,1347 refSeqComposite,1701 vertebrate cpgIslandExt,59 cpgIslandExt,611 cpgIslandExtUnmasked,62 cpgIslandExtUnmasked,614 cpgIslandSuper,59 cpgIslandSuper,611 xenoMrna,20 vertebrates augustusGene,209 cpgIslandExt,25 cpgIslandExtUnmasked,28 cpgIslandSuper,25 view chainMm10,466 chainNetMm10,469 cpgIslandExt,206 cpgIslandExtUnmasked,209 cpgIslandSuper,206 mrna,159 netMm10,466 xenoMrna,232 viewed gold,81 visibility cpgIslandExt,212 cpgIslandExtUnmasked,215 cpgIslandSuper,212 visible cpgIslandExt,188 cpgIslandExtUnmasked,191 cpgIslandSuper,188 visit refSeqComposite,105 w blastHg18KG,160 blastHg18KG,162 chainMm10,1043 chainMm10,1063 chainMm10,1111 chainNetMm10,1046 chainNetMm10,1066 chainNetMm10,1114 gold,147 netMm10,1043 netMm10,1063 netMm10,1111 waack augustusGene,318 was augustusGene,230 augustusGene,245 augustusGene,264 augustusGene,280 blastHg18KG,182 chainMm10,662 chainMm10,680 chainMm10,801 chainMm10,846 chainMm10,854 chainMm10,874 chainMm10,886 chainMm10,911 chainMm10,929 chainMm10,964 chainNetMm10,665 chainNetMm10,683 chainNetMm10,804 chainNetMm10,849 chainNetMm10,857 chainNetMm10,877 chainNetMm10,889 chainNetMm10,914 chainNetMm10,932 chainNetMm10,967 cpgIslandExt,255 cpgIslandExt,307 cpgIslandExt,587 cpgIslandExtUnmasked,258 cpgIslandExtUnmasked,310 cpgIslandExtUnmasked,590 cpgIslandSuper,255 cpgIslandSuper,307 cpgIslandSuper,587 microsat,108 mrna,419 mrna,449 netMm10,662 netMm10,680 netMm10,801 netMm10,846 netMm10,854 netMm10,874 netMm10,886 netMm10,911 netMm10,929 netMm10,964 refSeqComposite,507 refSeqComposite,1269 refSeqComposite,1719 rmsk,12 rmsk,262 simpleRepeat,68 ucscToINSDC,48 ucscToRefSeq,42 xenoMrna,491 xenoMrna,522 xenoRefGene,257 xenoRefGene,286 ways gc5BaseBw,47 refSeqComposite,1308 we ensGene,146 refSeqComposite,78 rmsk,122 webb chainMm10,943 chainMm10,980 chainNetMm10,946 chainNetMm10,983 netMm10,943 netMm10,980 weekly xenoRefGene,44 well augustusGene,78 cpgIslandExt,549 cpgIslandExtUnmasked,552 cpgIslandSuper,549 genscan,36 rmsk,54 were augustusGene,50 augustusGene,66 augustusGene,125 augustusGene,149 augustusGene,182 blastHg18KG,46 blastHg18KG,70 blastHg18KG,89 blastHg18KG,116 blastHg18KG,138 blastHg18KG,195 chainMm10,589 chainMm10,597 chainMm10,604 chainMm10,611 chainMm10,623 chainMm10,698 chainMm10,772 chainMm10,952 chainMm10,996 chainMm10,1010 chainNetMm10,592 chainNetMm10,600 chainNetMm10,607 chainNetMm10,614 chainNetMm10,626 chainNetMm10,701 chainNetMm10,775 chainNetMm10,955 chainNetMm10,999 chainNetMm10,1013 cpgIslandExt,227 cpgIslandExtUnmasked,230 cpgIslandSuper,227 ensGene,13 gc5BaseBw,79 gold,34 gold,41 mrna,395 mrna,443 netMm10,589 netMm10,597 netMm10,604 netMm10,611 netMm10,623 netMm10,698 netMm10,772 netMm10,952 netMm10,996 netMm10,1010 refSeqComposite,102 refSeqComposite,250 refSeqComposite,359 refSeqComposite,421 refSeqComposite,1156 refSeqComposite,1169 refSeqComposite,1234 refSeqComposite,1252 refSeqComposite,1293 ucscToINSDC,35 ucscToRefSeq,29 xenoMrna,465 xenoMrna,516 xenoRefGene,222 xenoRefGene,240 xenoRefGene,281 wheeler mrna,504 xenoMrna,577 when augustusGene,188 augustusGene,238 chainMm10,417 chainNetMm10,420 gold,38 mrna,95 mrna,105 mrna,404 netMm10,417 refSeqComposite,1096 refSeqComposite,1254 xenoMrna,168 xenoMrna,178 xenoMrna,476 xenoRefGene,242 where chainMm10,197 chainNetMm10,200 cpgIslandExt,151 cpgIslandExt,393 cpgIslandExtUnmasked,154 cpgIslandExtUnmasked,396 cpgIslandSuper,151 cpgIslandSuper,393 gold,96 netMm10,197 whether chainMm10,870 chainNetMm10,873 netMm10,870 which augustusGene,159 augustusGene,227 chainMm10,334 chainMm10,627 chainMm10,835 chainNetMm10,337 chainNetMm10,630 chainNetMm10,838 cpgIslandExt,85 cpgIslandExtUnmasked,88 cpgIslandSuper,85 mrna,182 nestedRepeats,31 nestedRepeats,87 netMm10,334 netMm10,627 netMm10,835 refSeqComposite,48 refSeqComposite,263 refSeqComposite,1488 refSeqComposite,1516 rmsk,21 rmsk,64 rmsk,158 rmsk,171 rmsk,197 simpleRepeat,27 xenoMrna,255 while chainMm10,222 chainNetMm10,225 netMm10,222 white gap,69 whole chainMm10,474 chainNetMm10,477 cpgIslandExt,167 cpgIslandExtUnmasked,170 cpgIslandSuper,167 gap,93 gap,136 gold,149 netMm10,474 refSeqComposite,1504 whole-genome gold,31 whose refSeqComposite,222 refSeqComposite,351 refSeqComposite,971 xenoMrna,82 width cpgIslandExt,430 cpgIslandExt,467 cpgIslandExt,470 cpgIslandExt,478 cpgIslandExtUnmasked,433 cpgIslandExtUnmasked,470 cpgIslandExtUnmasked,473 cpgIslandExtUnmasked,481 cpgIslandSuper,430 cpgIslandSuper,467 cpgIslandSuper,470 cpgIslandSuper,478 wildcards mrna,220 xenoMrna,293 will mrna,253 mrna,271 mrna,300 mrna,317 rmsk,277 rmsk,283 xenoMrna,326 xenoMrna,344 xenoMrna,373 xenoMrna,390 windows gc5BaseBw,7 gc5BaseBw,28 wish mrna,184 refSeqComposite,174 xenoMrna,257 xenoRefGene,209 with augustusGene,127 augustusGene,322 blastHg18KG,48 blastHg18KG,72 chainMm10,42 chainMm10,213 chainMm10,224 chainMm10,599 chainMm10,713 chainMm10,789 chainMm10,913 chainMm10,945 chainMm10,977 chainMm10,1114 chainNetMm10,45 chainNetMm10,216 chainNetMm10,227 chainNetMm10,602 chainNetMm10,716 chainNetMm10,792 chainNetMm10,916 chainNetMm10,948 chainNetMm10,980 chainNetMm10,1117 cpgIslandExt,19 cpgIslandExt,39 cpgIslandExt,141 cpgIslandExt,540 cpgIslandExtUnmasked,22 cpgIslandExtUnmasked,42 cpgIslandExtUnmasked,144 cpgIslandExtUnmasked,543 cpgIslandSuper,19 cpgIslandSuper,39 cpgIslandSuper,141 cpgIslandSuper,540 gc5BaseBw,35 microsat,69 microsat,76 mrna,439 nestedRepeats,133 netMm10,42 netMm10,213 netMm10,224 netMm10,599 netMm10,713 netMm10,789 netMm10,913 netMm10,945 netMm10,977 netMm10,1114 refSeqComposite,225 refSeqComposite,354 refSeqComposite,494 refSeqComposite,958 refSeqComposite,987 refSeqComposite,1046 refSeqComposite,1073 refSeqComposite,1099 refSeqComposite,1138 refSeqComposite,1245 refSeqComposite,1289 refSeqComposite,1407 rmsk,111 rmsk,225 simpleRepeat,52 xenoMrna,512 xenoRefGene,233 xenoRefGene,277 within gold,59 gold,118 gold,139 mrna,88 mrna,428 refSeqComposite,729 refSeqComposite,1278 simpleRepeat,37 xenoMrna,161 xenoMrna,501 xenoRefGene,86 xenoRefGene,266 wj chainMm10,1057 chainMm10,1099 chainNetMm10,1060 chainNetMm10,1102 mrna,523 netMm10,1057 netMm10,1099 refSeqComposite,1738 xenoMrna,596 xenoRefGene,307 worldwide mrna,466 refSeqComposite,1728 xenoMrna,539 xenoRefGene,297 would cpgIslandExt,184 cpgIslandExtUnmasked,187 cpgIslandSuper,184 ensGene,147 wrench refSeqComposite,757 written blastHg18KG,183 blastHg18KG,196 genscan,19 microsat,109 simpleRepeat,69 www.repeatmasker.org nestedRepeats,333 rmsk,356 xm refSeqComposite,355 xm_ ncbiRefSeq,10 ncbiRefSeqPredicted,8 xr refSeqComposite,357 xr_ ncbiRefSeq,12 ncbiRefSeqPredicted,10 y ensGene,177 yap chainMm10,1040 chainNetMm10,1043 netMm10,1040 yet refSeqComposite,680 refSeqComposite,705 you mrna,183 refSeqComposite,173 refSeqComposite,1357 refSeqComposite,1465 refSeqComposite,1549 refSeqComposite,1569 refSeqComposite,1639 rmsk,115 xenoMrna,256 xenoRefGene,208 younger nestedRepeats,94 your refSeqComposite,1531 refSeqComposite,1644 yp refSeqComposite,230 refSeqComposite,233 refSeqComposite,243 yp_ ncbiRefSeq,14 ncbiRefSeqCurated,12 z chainMm10,1103 chainNetMm10,1106 netMm10,1103 zebrafish augustusGene,202 augustusGene,278 zhang chainMm10,941 chainMm10,1102 chainNetMm10,944 chainNetMm10,1105 netMm10,941 netMm10,1102 zheng chainMm10,940 chainNetMm10,943 netMm10,940 zoomed-in genscan,103