(Photo courtesy of The Jackson Laboratory)
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Mus musculus (Photo courtesy of The Jackson Laboratory) |
The March 2005 mouse (Mus musculus) draft genome data was obtained from the Build 34 assembly by NCBI.
A genome position can be specified by the accession number of a sequenced genomic clone, an mRNA or EST or STS marker, or a cytological band, a chromosomal coordinate range, or keywords from the GenBank description of an mRNA. The following list provides examples of various types of position queries for the mouse genome. See the User's Guide for more information.
| Request: |
Genome Browser Response: |
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| chr16 | Displays all of chromosome 16 | |
| chr16:1-5000000 | Displays first 5 million bases of chr 16 | |
| AC072048.4 | Displays region of contig AC072048.4 | |
| D16Mit120 | Displays region around STS marker DMit16120 from the MGI consensus genetic map, including 100,000 bases on each side as well | |
| D16Mit120;D16Mit149 | Displays region between STS markers D16Mit120 and D16Mit149 | |
| BC012683 | Displays alignment location of mRNA with GenBank accession BC012683 | |
| AW045217 | Displays alignment location of EST with GenBank accession AW045217 | |
| Ncam2 | Displays region of genome with official MGI mouse genetic nomenclature Ncam2 | |
| pseudogene mRNA | Lists transcribed pseudogenes but not cDNAs | |
| zinc finger | Lists many zinc finger mRNAs | |
| kruppel zinc finger | Lists only kruppel-like zinc fingers | |
| huntington | Lists candidate genes associated with Huntington's disease | |
| Smith,D. | Lists mRNAs deposited by co-author D. Smith | |
| Use this last format for author queries. Although GenBank requires the search format Smith D, internally it uses the format Smith,D.. | ||
Build 34 includes approximately 2.6 Gb of sequence, of which about 1.9 Gb is finished sequence, contained in chromosomes 1-19, X, Y, M (mitochondrial DNA) and Un (unmapped clone contigs). Chromosomes 2, 4, 11 and X are finished in Build 34. More information about this version is available on the NCBI Build 34 Data web page.
NOTE: In the Genome Browser mm6 assembly, chrY_random erroneously contains a region duplicated from chrY. For more information about this issue, see the Genome Browser FAQ. Please also note that the UCSC mm6 database contains only the reference strain C57BL/6J.
The mm6 sequence and annotation data may be downloaded from the Genome Browser FTP server or Downloads web page. The mm6 annotation tracks were generated by UCSC and collaborators worldwide. See the credits page for a detailed list of the organizations and individuals who contributed to this release.