0 nestedRepeats,237 0.01 cpgIslandExt,473 cpgIslandExtUnmasked,476 cpgIslandSuper,473 0.0f cpgIslandExt,449 cpgIslandExtUnmasked,452 cpgIslandSuper,449 0.1f cpgIslandExt,451 cpgIslandExtUnmasked,454 cpgIslandSuper,451 0.2 augustusGene,136 0.5 augustusGene,138 xenoRefGene,261 0.6 cpgIslandExt,276 cpgIslandExtUnmasked,279 cpgIslandSuper,276 1 augustusGene,310 chainHg19,385 chainHg19,516 chainHg19,706 chainHg19,1105 chainMm10,385 chainMm10,516 chainMm10,706 chainMm10,1105 chainNetHg19,388 chainNetHg19,519 chainNetHg19,709 chainNetHg19,1108 chainNetMm10,388 chainNetMm10,519 chainNetMm10,709 chainNetMm10,1108 cpgIslandExt,245 cpgIslandExt,429 cpgIslandExt,458 cpgIslandExt,485 cpgIslandExtUnmasked,248 cpgIslandExtUnmasked,432 cpgIslandExtUnmasked,461 cpgIslandExtUnmasked,488 cpgIslandSuper,245 cpgIslandSuper,429 cpgIslandSuper,458 cpgIslandSuper,485 ensGene,200 ensGene,202 ensemblGeneScaffold,139 ensemblGeneScaffold,141 genscan,227 netHg19,385 netHg19,516 netHg19,706 netHg19,1105 netMm10,385 netMm10,516 netMm10,706 netMm10,1105 xenoRefGene,384 100 augustusGene,134 chainHg19,1073 chainMm10,1073 chainNetHg19,1076 chainNetMm10,1076 microsat,70 nestedRepeats,230 netHg19,1073 netMm10,1073 100.0 cpgIslandExt,474 cpgIslandExtUnmasked,477 cpgIslandSuper,474 1000 chainHg19,745 chainMm10,745 chainNetHg19,748 chainNetMm10,748 nestedRepeats,238 netHg19,745 netMm10,745 1000-2000 augustusGene,161 103-7 chainHg19,1106 chainMm10,1106 chainNetHg19,1109 chainNetMm10,1109 netHg19,1106 netMm10,1106 10607616 nestedRepeats,394 rmsk,417 10973072 nestedRepeats,361 rmsk,384 11 chainHg19,702 chainHg19,709 chainMm10,702 chainMm10,709 chainNetHg19,705 chainNetHg19,712 chainNetMm10,705 chainNetMm10,712 netHg19,702 netHg19,709 netMm10,702 netMm10,709 111 chainHg19,704 chainHg19,710 chainMm10,704 chainMm10,710 chainNetHg19,707 chainNetHg19,713 chainNetMm10,707 chainNetMm10,713 netHg19,704 netHg19,710 netMm10,704 netMm10,710 11484-9 chainHg19,1075 chainMm10,1075 chainNetHg19,1078 chainNetMm10,1078 netHg19,1075 netMm10,1075 115-26 chainHg19,1037 chainMm10,1037 chainNetHg19,1040 chainNetMm10,1040 netHg19,1037 netMm10,1037 11752248 ensGene,205 ensemblGeneScaffold,144 117900 chainHg19,726 chainHg19,738 chainMm10,726 chainMm10,738 chainNetHg19,729 chainNetHg19,741 chainNetMm10,729 chainNetMm10,741 netHg19,726 netHg19,738 netMm10,726 netMm10,738 118300 chainHg19,750 chainMm10,750 chainNetHg19,753 chainNetMm10,753 netHg19,750 netMm10,750 11928468 chainHg19,1039 chainMm10,1039 chainNetHg19,1042 chainNetMm10,1042 netHg19,1039 netMm10,1039 11932250 xenoRefGene,314 12 xenoRefGene,310 12111 chainHg19,712 chainMm10,712 chainNetHg19,715 chainNetMm10,715 netHg19,712 netMm10,712 12529312 chainHg19,1108 chainMm10,1108 chainNetHg19,1111 chainNetMm10,1111 netHg19,1108 netMm10,1108 127-163 genscan,206 13 chainHg19,1104 chainMm10,1104 chainNetHg19,1107 chainNetMm10,1107 netHg19,1104 netMm10,1104 1300 chainHg19,746 chainMm10,746 chainNetHg19,749 chainNetMm10,749 netHg19,746 netMm10,746 134-41 windowmaskerSdust,112 14500911 chainHg19,1077 chainMm10,1077 chainNetHg19,1080 chainNetMm10,1080 netHg19,1077 netMm10,1077 14534192 augustusGene,340 15 microsat,30 microsat,79 microsat,130 simpleRepeat,90 windowmaskerSdust,109 xenoRefGene,233 152111 chainHg19,715 chainMm10,715 chainNetHg19,718 chainNetMm10,718 netHg19,715 netMm10,715 15608248 xenoRefGene,390 16 nestedRepeats,357 rmsk,380 16287941 windowmaskerSdust,114 17 cpgIslandExt,241 cpgIslandExtUnmasked,244 cpgIslandSuper,241 18218656 augustusGene,315 19 augustusGene,335 196 cpgIslandExt,619 cpgIslandExtUnmasked,622 cpgIslandSuper,619 1987 cpgIslandExt,379 cpgIslandExt,616 cpgIslandExtUnmasked,382 cpgIslandExtUnmasked,619 cpgIslandSuper,379 cpgIslandSuper,616 1996 nestedRepeats,410 rmsk,433 1996-2010 nestedRepeats,334 rmsk,357 1997 genscan,149 genscan,223 1998 genscan,167 genscan,204 1999 microsat,103 microsat,128 nestedRepeats,388 rmsk,411 simpleRepeat,65 simpleRepeat,88 2 augustusGene,142 augustusGene,337 chainHg19,419 chainHg19,424 chainHg19,707 chainMm10,419 chainMm10,424 chainMm10,707 chainNetHg19,422 chainNetHg19,427 chainNetHg19,710 chainNetMm10,422 chainNetMm10,427 chainNetMm10,710 cpgIslandExt,421 cpgIslandExt,426 cpgIslandExt,428 cpgIslandExt,434 cpgIslandExt,460 cpgIslandExt,475 cpgIslandExt,620 cpgIslandExtUnmasked,424 cpgIslandExtUnmasked,429 cpgIslandExtUnmasked,431 cpgIslandExtUnmasked,437 cpgIslandExtUnmasked,463 cpgIslandExtUnmasked,478 cpgIslandExtUnmasked,623 cpgIslandSuper,421 cpgIslandSuper,426 cpgIslandSuper,428 cpgIslandSuper,434 cpgIslandSuper,460 cpgIslandSuper,475 cpgIslandSuper,620 microsat,66 microsat,132 netHg19,419 netHg19,424 netHg19,707 netMm10,419 netMm10,424 netMm10,707 simpleRepeat,92 windowmaskerSdust,111 20 chainHg19,1074 chainMm10,1074 chainNetHg19,1077 chainNetMm10,1077 cpgIslandExt,618 cpgIslandExtUnmasked,621 cpgIslandSuper,618 netHg19,1074 netMm10,1074 200 cpgIslandExt,271 cpgIslandExtUnmasked,274 cpgIslandSuper,271 2000 nestedRepeats,63 nestedRepeats,355 rmsk,99 rmsk,378 2002 chainHg19,1036 chainMm10,1036 chainNetHg19,1039 chainNetMm10,1039 ensGene,47 ensGene,198 ensemblGeneScaffold,92 ensemblGeneScaffold,137 netHg19,1036 netMm10,1036 xenoRefGene,308 2003 augustusGene,333 chainHg19,1070 chainHg19,1102 chainMm10,1070 chainMm10,1102 chainNetHg19,1073 chainNetHg19,1105 chainNetMm10,1073 chainNetMm10,1105 netHg19,1070 netHg19,1102 netMm10,1070 netMm10,1102 2005 xenoRefGene,382 2006 windowmaskerSdust,107 2007 chainHg19,1009 chainMm10,1009 chainNetHg19,1012 chainNetMm10,1012 netHg19,1009 netMm10,1009 2008 augustusGene,308 2009 chainHg19,5 chainHg19,67 chainHg19,301 chainNetHg19,6 chainNetHg19,70 chainNetHg19,304 chainNetHg19Viewchain,4 chainNetHg19Viewnet,4 netHg19,5 netHg19,67 netHg19,301 2011 chainMm10,5 chainMm10,67 chainMm10,301 chainNetMm10,6 chainNetMm10,70 chainNetMm10,304 chainNetMm10Viewchain,4 chainNetMm10Viewnet,4 netMm10,5 netMm10,67 netMm10,301 2014 xenoRefGene,349 2111 chainHg19,711 chainMm10,711 chainNetHg19,714 chainNetMm10,714 netHg19,711 netMm10,711 217900 chainHg19,727 chainHg19,739 chainMm10,727 chainMm10,739 chainNetHg19,730 chainNetHg19,742 chainNetMm10,730 chainNetMm10,742 netHg19,727 netHg19,739 netMm10,727 netMm10,739 218300 chainHg19,751 chainMm10,751 chainNetHg19,754 chainNetMm10,754 netHg19,751 netMm10,751 22 windowmaskerSdust,110 22900 chainHg19,724 chainHg19,736 chainMm10,724 chainMm10,736 chainNetHg19,727 chainNetHg19,739 chainNetMm10,727 chainNetMm10,739 netHg19,724 netHg19,736 netMm10,724 netMm10,736 23300 chainHg19,748 chainMm10,748 chainNetHg19,751 chainNetMm10,751 netHg19,748 netMm10,748 24 augustusGene,311 24259432 xenoRefGene,356 25 genscan,225 xenoRefGene,268 252111 chainHg19,716 chainMm10,716 chainNetHg19,719 chainNetMm10,719 netHg19,716 netMm10,716 261-82 cpgIslandExt,621 cpgIslandExtUnmasked,624 cpgIslandSuper,621 268 genscan,226 27 microsat,131 simpleRepeat,91 2900 chainHg19,723 chainHg19,735 chainMm10,723 chainMm10,735 chainNetHg19,726 chainNetHg19,738 chainNetMm10,726 chainNetMm10,738 netHg19,723 netHg19,735 netMm10,723 netMm10,735 2n cpgIslandExt,487 cpgIslandExtUnmasked,490 cpgIslandSuper,487 3 augustusGene,140 chainHg19,431 chainHg19,708 chainMm10,431 chainMm10,708 chainNetHg19,434 chainNetHg19,711 chainNetMm10,434 chainNetMm10,711 cpgIslandExt,432 cpgIslandExt,462 cpgIslandExtUnmasked,435 cpgIslandExtUnmasked,465 cpgIslandSuper,432 cpgIslandSuper,462 microsat,68 netHg19,431 netHg19,708 netMm10,431 netMm10,708 3.1 augustusGene,24 30 chainHg19,1072 chainMm10,1072 chainNetHg19,1075 chainNetMm10,1075 ensGene,201 ensemblGeneScaffold,140 netHg19,1072 netMm10,1072 300 cpgIslandExt,6 cpgIslandExtUnmasked,9 cpgIslandSuper,6 3000 chainHg19,680 chainMm10,680 chainNetHg19,683 chainNetMm10,683 netHg19,680 netMm10,680 317900 chainHg19,728 chainHg19,740 chainMm10,728 chainMm10,740 chainNetHg19,731 chainNetHg19,743 chainNetMm10,731 chainNetMm10,743 netHg19,728 netHg19,740 netMm10,728 netMm10,740 318300 chainHg19,752 chainMm10,752 chainNetHg19,755 chainNetMm10,755 netHg19,752 netMm10,752 32111 chainHg19,713 chainMm10,713 chainNetHg19,716 chainNetMm10,716 netHg19,713 netMm10,713 33 xenoRefGene,385 3300 chainHg19,747 chainMm10,747 chainNetHg19,750 chainNetMm10,750 netHg19,747 netMm10,747 350 chainHg19,718 chainHg19,730 chainMm10,718 chainMm10,730 chainNetHg19,721 chainNetHg19,733 chainNetMm10,721 chainNetMm10,733 netHg19,718 netHg19,730 netMm10,718 netMm10,730 3656447 cpgIslandExt,623 cpgIslandExtUnmasked,626 cpgIslandSuper,623 38-41 ensGene,203 ensemblGeneScaffold,142 39s ensGene,163 4 xenoRefGene,311 418-420 nestedRepeats,359 rmsk,382 42 xenoRefGene,351 425 chainHg19,719 chainHg19,731 chainMm10,719 chainMm10,731 chainNetHg19,722 chainNetHg19,734 chainNetMm10,722 chainNetMm10,734 netHg19,719 netHg19,731 netMm10,719 netMm10,731 450 chainHg19,720 chainHg19,732 chainMm10,720 chainMm10,732 chainNetHg19,723 chainNetHg19,735 chainNetMm10,723 chainNetMm10,735 netHg19,720 netHg19,732 netMm10,720 netMm10,732 5 augustusGene,312 cpgIslandExt,464 cpgIslandExtUnmasked,467 cpgIslandSuper,464 5-base gc5BaseBw,6 gc5BaseBw,27 50 cpgIslandExt,265 cpgIslandExtUnmasked,268 cpgIslandSuper,265 nestedRepeats,229 573-80 microsat,133 simpleRepeat,93 57900 chainHg19,725 chainHg19,737 chainMm10,725 chainMm10,737 chainNetHg19,728 chainNetHg19,740 chainNetMm10,728 chainNetMm10,740 netHg19,725 netHg19,737 netMm10,725 netMm10,737 58300 chainHg19,749 chainMm10,749 chainNetHg19,752 chainNetMm10,752 netHg19,749 netMm10,749 6 cpgIslandExt,466 cpgIslandExt,469 cpgIslandExt,477 cpgIslandExtUnmasked,469 cpgIslandExtUnmasked,472 cpgIslandExtUnmasked,480 cpgIslandSuper,466 cpgIslandSuper,469 cpgIslandSuper,477 nestedRepeats,391 nestedRepeats,412 nestedRepeats,413 rmsk,414 rmsk,435 rmsk,436 600 chainHg19,721 chainHg19,733 chainMm10,721 chainMm10,733 chainNetHg19,724 chainNetHg19,736 chainNetMm10,724 chainNetMm10,736 netHg19,721 netHg19,733 netMm10,721 netMm10,733 637-44 augustusGene,313 656-64 xenoRefGene,312 657-63 nestedRepeats,392 rmsk,415 7 cpgIslandExt,472 cpgIslandExt,480 cpgIslandExtUnmasked,475 cpgIslandExtUnmasked,483 cpgIslandSuper,472 cpgIslandSuper,480 72111 chainHg19,714 chainMm10,714 chainNetHg19,717 chainNetMm10,717 netHg19,714 netMm10,714 743-8 nestedRepeats,414 rmsk,437 750 chainHg19,742 chainMm10,742 chainNetHg19,745 chainNetMm10,745 netHg19,742 netMm10,742 78-94 genscan,228 825 chainHg19,743 chainMm10,743 chainNetHg19,746 chainNetMm10,746 netHg19,743 netMm10,743 850 chainHg19,744 chainMm10,744 chainNetHg19,747 chainNetMm10,747 netHg19,744 netMm10,744 8994846 nestedRepeats,416 rmsk,439 9 cpgIslandExt,482 cpgIslandExtUnmasked,485 cpgIslandSuper,482 nestedRepeats,358 nestedRepeats,390 rmsk,381 rmsk,413 900 chainHg19,722 chainHg19,734 chainMm10,722 chainMm10,734 chainNetHg19,725 chainNetHg19,737 chainNetMm10,725 chainNetMm10,737 netHg19,722 netHg19,734 netMm10,722 netMm10,734 9149143 genscan,230 9862982 microsat,135 simpleRepeat,95 a augustusGene,116 augustusGene,128 augustusGene,152 augustusGene,215 augustusGene,218 augustusGene,233 augustusGene,323 augustusGene,328 chainHg19,75 chainHg19,144 chainHg19,196 chainHg19,451 chainHg19,461 chainHg19,465 chainHg19,532 chainHg19,549 chainHg19,552 chainHg19,618 chainHg19,623 chainHg19,628 chainHg19,632 chainHg19,643 chainHg19,675 chainHg19,794 chainHg19,808 chainHg19,814 chainHg19,820 chainHg19,824 chainHg19,827 chainHg19,855 chainHg19,1045 chainHg19,1069 chainHg19,1085 chainMm10,75 chainMm10,144 chainMm10,196 chainMm10,451 chainMm10,461 chainMm10,465 chainMm10,532 chainMm10,549 chainMm10,552 chainMm10,618 chainMm10,623 chainMm10,628 chainMm10,632 chainMm10,643 chainMm10,675 chainMm10,794 chainMm10,808 chainMm10,814 chainMm10,820 chainMm10,824 chainMm10,827 chainMm10,855 chainMm10,1045 chainMm10,1069 chainMm10,1085 chainNetHg19,78 chainNetHg19,147 chainNetHg19,199 chainNetHg19,454 chainNetHg19,464 chainNetHg19,468 chainNetHg19,535 chainNetHg19,552 chainNetHg19,555 chainNetHg19,621 chainNetHg19,626 chainNetHg19,631 chainNetHg19,635 chainNetHg19,646 chainNetHg19,678 chainNetHg19,797 chainNetHg19,811 chainNetHg19,817 chainNetHg19,823 chainNetHg19,827 chainNetHg19,830 chainNetHg19,858 chainNetHg19,1048 chainNetHg19,1072 chainNetHg19,1088 chainNetMm10,78 chainNetMm10,147 chainNetMm10,199 chainNetMm10,454 chainNetMm10,464 chainNetMm10,468 chainNetMm10,535 chainNetMm10,552 chainNetMm10,555 chainNetMm10,621 chainNetMm10,626 chainNetMm10,631 chainNetMm10,635 chainNetMm10,646 chainNetMm10,678 chainNetMm10,797 chainNetMm10,811 chainNetMm10,817 chainNetMm10,823 chainNetMm10,827 chainNetMm10,830 chainNetMm10,858 chainNetMm10,1048 chainNetMm10,1072 chainNetMm10,1088 cpgIslandExt,43 cpgIslandExt,50 cpgIslandExt,54 cpgIslandExt,128 cpgIslandExt,166 cpgIslandExt,236 cpgIslandExt,590 cpgIslandExt,593 cpgIslandExtUnmasked,46 cpgIslandExtUnmasked,53 cpgIslandExtUnmasked,57 cpgIslandExtUnmasked,131 cpgIslandExtUnmasked,169 cpgIslandExtUnmasked,239 cpgIslandExtUnmasked,593 cpgIslandExtUnmasked,596 cpgIslandSuper,43 cpgIslandSuper,50 cpgIslandSuper,54 cpgIslandSuper,128 cpgIslandSuper,166 cpgIslandSuper,236 cpgIslandSuper,590 cpgIslandSuper,593 ensGene,31 ensemblGeneScaffold,77 gap,59 gap,63 gap,90 gap,96 gap,99 gc5BaseBw,44 genscan,102 genscan,132 gold,49 gold,107 gold,113 microsat,53 microsat,119 nestedRepeats,177 nestedRepeats,226 nestedRepeats,344 nestedRepeats,363 netHg19,75 netHg19,144 netHg19,196 netHg19,451 netHg19,461 netHg19,465 netHg19,532 netHg19,549 netHg19,552 netHg19,618 netHg19,623 netHg19,628 netHg19,632 netHg19,643 netHg19,675 netHg19,794 netHg19,808 netHg19,814 netHg19,820 netHg19,824 netHg19,827 netHg19,855 netHg19,1045 netHg19,1069 netHg19,1085 netMm10,75 netMm10,144 netMm10,196 netMm10,451 netMm10,461 netMm10,465 netMm10,532 netMm10,549 netMm10,552 netMm10,618 netMm10,623 netMm10,628 netMm10,632 netMm10,643 netMm10,675 netMm10,794 netMm10,808 netMm10,814 netMm10,820 netMm10,824 netMm10,827 netMm10,855 netMm10,1045 netMm10,1069 netMm10,1085 quality,44 quality,59 rmsk,36 rmsk,56 rmsk,226 rmsk,240 rmsk,367 rmsk,386 simpleRepeat,79 windowmaskerSdust,91 xenoRefGene,237 xenoRefGene,256 xenoRefGene,326 xenoRefGene,369 a91-114-31-123 chainHg19,668 chainMm10,668 chainNetHg19,671 chainNetMm10,671 netHg19,668 netMm10,668 aa windowmaskerSdust,97 ab augustusGene,3 augustusGene,16 abbreviated chainHg19,581 chainMm10,581 chainNetHg19,584 chainNetMm10,584 netHg19,581 netMm10,581 about chainHg19,457 chainHg19,470 chainHg19,844 chainMm10,457 chainMm10,470 chainMm10,844 chainNetHg19,460 chainNetHg19,473 chainNetHg19,847 chainNetMm10,460 chainNetMm10,473 chainNetMm10,847 genscan,127 microsat,98 netHg19,457 netHg19,470 netHg19,844 netMm10,457 netMm10,470 netMm10,844 simpleRepeat,59 xenoRefGene,176 above chainHg19,529 chainHg19,541 chainHg19,561 chainMm10,529 chainMm10,541 chainMm10,561 chainNetHg19,532 chainNetHg19,544 chainNetHg19,564 chainNetMm10,532 chainNetMm10,544 chainNetMm10,564 nestedRepeats,218 netHg19,529 netHg19,541 netHg19,561 netMm10,529 netMm10,541 netMm10,561 abundance chainHg19,178 chainMm10,178 chainNetHg19,181 chainNetMm10,181 netHg19,178 netMm10,178 acad chainHg19,1065 chainMm10,1065 chainNetHg19,1068 chainNetMm10,1068 netHg19,1065 netMm10,1065 acceptor genscan,32 access cpgIslandExt,505 cpgIslandExtUnmasked,508 cpgIslandSuper,505 ensGene,56 ensGene,100 accession xenoRefGene,116 xenoRefGene,128 according augustusGene,114 cpgIslandExt,370 cpgIslandExtUnmasked,373 cpgIslandSuper,370 nestedRepeats,183 acgt chainHg19,667 chainMm10,667 chainNetHg19,670 chainNetMm10,670 netHg19,667 netMm10,667 acids ensGene,196 ensemblGeneScaffold,135 microsat,126 simpleRepeat,86 xenoRefGene,347 xenoRefGene,380 added chainHg19,591 chainMm10,591 chainNetHg19,594 chainNetMm10,594 nestedRepeats,147 netHg19,591 netMm10,591 additional nestedRepeats,288 rmsk,295 admin cpgIslandExt,577 cpgIslandExtUnmasked,580 cpgIslandSuper,577 advice chainHg19,930 chainHg19,962 chainMm10,930 chainMm10,962 chainNetHg19,933 chainNetHg19,965 chainNetMm10,933 chainNetMm10,965 netHg19,930 netHg19,962 netMm10,930 netMm10,962 af nestedRepeats,372 nestedRepeats,396 rmsk,395 rmsk,419 afa nestedRepeats,325 rmsk,348 affine chainHg19,85 chainMm10,85 chainNetHg19,88 chainNetMm10,88 netHg19,85 netMm10,85 after chainHg19,902 chainMm10,902 chainNetHg19,905 chainNetMm10,905 cpgIslandExt,94 cpgIslandExt,326 cpgIslandExtUnmasked,97 cpgIslandExtUnmasked,329 cpgIslandSuper,94 cpgIslandSuper,326 netHg19,902 netMm10,902 against xenoRefGene,220 agarwala windowmaskerSdust,98 aids cpgIslandExt,86 cpgIslandExtUnmasked,89 cpgIslandSuper,86 al cpgIslandExt,378 cpgIslandExtUnmasked,381 cpgIslandSuper,378 ensGene,46 ensGene,189 ensemblGeneScaffold,91 ensemblGeneScaffold,128 xenoRefGene,338 algorithm augustusGene,130 align chainHg19,194 chainMm10,194 chainNetHg19,197 chainNetMm10,197 netHg19,194 netMm10,194 alignable chainHg19,22 chainHg19,38 chainMm10,22 chainMm10,38 chainNetHg19,25 chainNetHg19,41 chainNetMm10,25 chainNetMm10,41 netHg19,22 netHg19,38 netMm10,22 netMm10,38 aligned chainHg19,584 chainMm10,584 chainNetHg19,587 chainNetMm10,587 netHg19,584 netMm10,584 xenoRefGene,219 xenoRefGene,240 aligning chainHg19,133 chainHg19,329 chainHg19,359 chainMm10,133 chainMm10,329 chainMm10,359 chainNetHg19,136 chainNetHg19,332 chainNetHg19,362 chainNetMm10,136 chainNetMm10,332 chainNetMm10,362 netHg19,133 netHg19,329 netHg19,359 netMm10,133 netMm10,329 netMm10,359 alignment chainHg19,257 chainHg19,1012 chainMm10,257 chainMm10,1012 chainNetHg19,260 chainNetHg19,1015 chainNetMm10,260 chainNetMm10,1015 netHg19,8 netHg19,257 netHg19,1012 netMm10,8 netMm10,257 netMm10,1012 xenoRefGene,229 xenoRefGene,245 xenoRefGene,304 alignments augustusGene,300 chainHg19,9 chainHg19,63 chainHg19,444 chainHg19,596 chainHg19,608 chainHg19,616 chainHg19,642 chainHg19,760 chainHg19,1032 chainHg19,1097 chainMm10,9 chainMm10,63 chainMm10,444 chainMm10,596 chainMm10,608 chainMm10,616 chainMm10,642 chainMm10,760 chainMm10,1032 chainMm10,1097 chainNetHg19,12 chainNetHg19,66 chainNetHg19,447 chainNetHg19,599 chainNetHg19,611 chainNetHg19,619 chainNetHg19,645 chainNetHg19,763 chainNetHg19,1035 chainNetHg19,1100 chainNetHg19Viewchain,10 chainNetHg19Viewnet,10 chainNetMm10,12 chainNetMm10,66 chainNetMm10,447 chainNetMm10,599 chainNetMm10,611 chainNetMm10,619 chainNetMm10,645 chainNetMm10,763 chainNetMm10,1035 chainNetMm10,1100 chainNetMm10Viewchain,10 chainNetMm10Viewnet,10 netHg19,63 netHg19,444 netHg19,596 netHg19,608 netHg19,616 netHg19,642 netHg19,760 netHg19,1032 netHg19,1097 netMm10,63 netMm10,444 netMm10,596 netMm10,608 netMm10,616 netMm10,642 netMm10,760 netMm10,1032 netMm10,1097 rmsk,306 xenoRefGene,254 all augustusGene,207 chainHg19,615 chainMm10,615 chainNetHg19,618 chainNetMm10,618 cpgIslandExt,327 cpgIslandExt,527 cpgIslandExtUnmasked,6 cpgIslandExtUnmasked,330 cpgIslandExtUnmasked,530 cpgIslandSuper,327 cpgIslandSuper,527 gold,125 nestedRepeats,138 nestedRepeats,170 netHg19,615 netMm10,615 rmsk,65 allows augustusGene,168 chainHg19,80 chainMm10,80 chainNetHg19,83 chainNetMm10,83 netHg19,80 netMm10,80 xenoRefGene,147 alone augustusGene,33 already chainHg19,805 chainMm10,805 chainNetHg19,808 chainNetMm10,808 netHg19,805 netMm10,805 also chainHg19,91 chainMm10,91 chainNetHg19,94 chainNetMm10,94 cpgIslandExt,531 cpgIslandExtUnmasked,534 cpgIslandSuper,531 ensGene,48 gold,34 netHg19,91 netMm10,91 alternating gold,79 alternative augustusGene,122 alternatives-from-sampling augustusGene,131 alus rmsk,160 always gold,110 amount rmsk,215 amsterdam genscan,201 an chainHg19,151 chainHg19,177 chainHg19,183 chainMm10,151 chainMm10,177 chainMm10,183 chainNetHg19,154 chainNetHg19,180 chainNetHg19,186 chainNetMm10,154 chainNetMm10,180 chainNetMm10,186 cpgIslandExt,66 cpgIslandExtUnmasked,69 cpgIslandSuper,66 gc5BaseBw,65 nestedRepeats,196 nestedRepeats,347 netHg19,151 netHg19,177 netHg19,183 netMm10,151 netMm10,177 netMm10,183 quality,78 rmsk,370 xenoRefGene,141 xenoRefGene,228 xenoRefGene,340 analyze microsat,122 simpleRepeat,82 and augustusGene,9 augustusGene,60 augustusGene,74 augustusGene,87 augustusGene,206 augustusGene,271 augustusGene,277 augustusGene,296 augustusGene,327 chainHg19,97 chainHg19,111 chainHg19,225 chainHg19,233 chainHg19,247 chainHg19,285 chainHg19,307 chainHg19,433 chainHg19,587 chainHg19,622 chainHg19,630 chainHg19,771 chainHg19,849 chainHg19,881 chainHg19,892 chainHg19,901 chainHg19,926 chainHg19,941 chainHg19,966 chainHg19,972 chainHg19,978 chainHg19,985 chainHg19,991 chainHg19,1055 chainHg19,1060 chainMm10,97 chainMm10,111 chainMm10,225 chainMm10,233 chainMm10,247 chainMm10,285 chainMm10,307 chainMm10,433 chainMm10,587 chainMm10,622 chainMm10,630 chainMm10,771 chainMm10,849 chainMm10,881 chainMm10,892 chainMm10,901 chainMm10,926 chainMm10,941 chainMm10,966 chainMm10,972 chainMm10,978 chainMm10,985 chainMm10,991 chainMm10,1055 chainMm10,1060 chainNetHg19,10 chainNetHg19,100 chainNetHg19,114 chainNetHg19,228 chainNetHg19,236 chainNetHg19,250 chainNetHg19,288 chainNetHg19,310 chainNetHg19,436 chainNetHg19,590 chainNetHg19,625 chainNetHg19,633 chainNetHg19,774 chainNetHg19,852 chainNetHg19,884 chainNetHg19,895 chainNetHg19,904 chainNetHg19,929 chainNetHg19,944 chainNetHg19,969 chainNetHg19,975 chainNetHg19,981 chainNetHg19,988 chainNetHg19,994 chainNetHg19,1058 chainNetHg19,1063 chainNetHg19Viewchain,8 chainNetHg19Viewnet,8 chainNetMm10,10 chainNetMm10,100 chainNetMm10,114 chainNetMm10,228 chainNetMm10,236 chainNetMm10,250 chainNetMm10,288 chainNetMm10,310 chainNetMm10,436 chainNetMm10,590 chainNetMm10,625 chainNetMm10,633 chainNetMm10,774 chainNetMm10,852 chainNetMm10,884 chainNetMm10,895 chainNetMm10,904 chainNetMm10,929 chainNetMm10,944 chainNetMm10,969 chainNetMm10,975 chainNetMm10,981 chainNetMm10,988 chainNetMm10,994 chainNetMm10,1058 chainNetMm10,1063 chainNetMm10Viewchain,8 chainNetMm10Viewnet,8 cpgIslandExt,12 cpgIslandExt,35 cpgIslandExt,183 cpgIslandExt,244 cpgIslandExt,248 cpgIslandExt,295 cpgIslandExt,508 cpgIslandExt,599 cpgIslandExtUnmasked,15 cpgIslandExtUnmasked,38 cpgIslandExtUnmasked,186 cpgIslandExtUnmasked,247 cpgIslandExtUnmasked,251 cpgIslandExtUnmasked,298 cpgIslandExtUnmasked,511 cpgIslandExtUnmasked,602 cpgIslandSuper,12 cpgIslandSuper,35 cpgIslandSuper,183 cpgIslandSuper,244 cpgIslandSuper,248 cpgIslandSuper,295 cpgIslandSuper,508 cpgIslandSuper,599 cytoBandIdeo,8 ensGene,6 ensGene,128 ensemblGeneScaffold,8 ensemblGeneScaffold,33 ensemblGeneScaffold,74 gap,5 gap,44 gap,62 gc5BaseBw,9 gc5BaseBw,22 gc5BaseBw,74 genscan,7 genscan,30 genscan,40 genscan,46 genscan,63 genscan,83 genscan,97 genscan,108 genscan,119 genscan,138 genscan,147 gold,6 gold,26 gold,43 gold,81 gold,95 gold,101 microsat,4 microsat,8 microsat,33 microsat,36 microsat,67 microsat,72 microsat,75 nestedRepeats,12 nestedRepeats,38 nestedRepeats,113 nestedRepeats,162 nestedRepeats,166 nestedRepeats,231 nestedRepeats,256 nestedRepeats,309 nestedRepeats,315 nestedRepeats,346 nestedRepeats,375 netHg19,97 netHg19,111 netHg19,225 netHg19,233 netHg19,247 netHg19,285 netHg19,307 netHg19,433 netHg19,587 netHg19,622 netHg19,630 netHg19,771 netHg19,849 netHg19,881 netHg19,892 netHg19,901 netHg19,926 netHg19,941 netHg19,966 netHg19,972 netHg19,978 netHg19,985 netHg19,991 netHg19,1055 netHg19,1060 netMm10,97 netMm10,111 netMm10,225 netMm10,233 netMm10,247 netMm10,285 netMm10,307 netMm10,433 netMm10,587 netMm10,622 netMm10,630 netMm10,771 netMm10,849 netMm10,881 netMm10,892 netMm10,901 netMm10,926 netMm10,941 netMm10,966 netMm10,972 netMm10,978 netMm10,985 netMm10,991 netMm10,1055 netMm10,1060 quality,8 quality,99 rmsk,7 rmsk,28 rmsk,137 rmsk,221 rmsk,332 rmsk,338 rmsk,369 rmsk,398 simpleRepeat,9 simpleRepeat,42 windowmaskerSdust,10 xenoRefGene,7 xenoRefGene,16 xenoRefGene,43 xenoRefGene,77 xenoRefGene,127 xenoRefGene,152 xenoRefGene,185 xenoRefGene,198 xenoRefGene,265 xenoRefGene,292 xenoRefGene,377 annotated rmsk,67 annotation chainHg19,296 chainMm10,296 chainNetHg19,299 chainNetMm10,299 ensGene,165 ensemblGeneScaffold,105 netHg19,296 netMm10,296 rmsk,38 annotations ensGene,156 genscan,120 nestedRepeats,71 xenoRefGene,186 api cpgIslandExt,519 cpgIslandExtUnmasked,522 cpgIslandSuper,519 ensGene,109 appropriate xenoRefGene,110 apr genscan,224 xenoRefGene,309 apsects gc5BaseBw,51 archive ensGene,142 are augustusGene,27 chainHg19,21 chainHg19,40 chainHg19,53 chainHg19,140 chainHg19,208 chainHg19,219 chainHg19,318 chainHg19,387 chainHg19,408 chainHg19,415 chainHg19,498 chainHg19,687 chainMm10,21 chainMm10,40 chainMm10,53 chainMm10,140 chainMm10,208 chainMm10,219 chainMm10,318 chainMm10,387 chainMm10,408 chainMm10,415 chainMm10,498 chainMm10,687 chainNetHg19,24 chainNetHg19,43 chainNetHg19,56 chainNetHg19,143 chainNetHg19,211 chainNetHg19,222 chainNetHg19,321 chainNetHg19,390 chainNetHg19,411 chainNetHg19,418 chainNetHg19,501 chainNetHg19,690 chainNetMm10,24 chainNetMm10,43 chainNetMm10,56 chainNetMm10,143 chainNetMm10,211 chainNetMm10,222 chainNetMm10,321 chainNetMm10,390 chainNetMm10,411 chainNetMm10,418 chainNetMm10,501 chainNetMm10,690 cpgIslandExt,8 cpgIslandExt,17 cpgIslandExt,28 cpgIslandExt,116 cpgIslandExt,149 cpgIslandExt,153 cpgIslandExtUnmasked,11 cpgIslandExtUnmasked,20 cpgIslandExtUnmasked,31 cpgIslandExtUnmasked,119 cpgIslandExtUnmasked,152 cpgIslandExtUnmasked,156 cpgIslandSuper,8 cpgIslandSuper,17 cpgIslandSuper,28 cpgIslandSuper,116 cpgIslandSuper,149 cpgIslandSuper,153 ensGene,81 ensGene,121 ensemblGeneScaffold,29 gap,32 gap,55 genscan,25 genscan,160 gold,51 gold,73 gold,90 gold,130 microsat,16 microsat,25 microsat,52 nestedRepeats,74 nestedRepeats,102 nestedRepeats,140 nestedRepeats,146 nestedRepeats,164 nestedRepeats,172 nestedRepeats,181 nestedRepeats,209 nestedRepeats,274 nestedRepeats,281 netHg19,21 netHg19,40 netHg19,53 netHg19,140 netHg19,208 netHg19,219 netHg19,318 netHg19,387 netHg19,408 netHg19,415 netHg19,498 netHg19,687 netMm10,21 netMm10,40 netMm10,53 netMm10,140 netMm10,208 netMm10,219 netMm10,318 netMm10,387 netMm10,408 netMm10,415 netMm10,498 netMm10,687 rmsk,43 rmsk,288 rmsk,304 rmsk,312 simpleRepeat,49 xenoRefGene,38 xenoRefGene,103 xenoRefGene,201 areas cpgIslandExt,305 cpgIslandExtUnmasked,308 cpgIslandSuper,305 gc5BaseBw,37 arian chainHg19,939 chainMm10,939 chainNetHg19,942 chainNetMm10,942 nestedRepeats,305 netHg19,939 netMm10,939 rmsk,16 rmsk,328 arrangement cpgIslandExt,67 cpgIslandExtUnmasked,70 cpgIslandSuper,67 arrows nestedRepeats,145 nestedRepeats,163 as augustusGene,77 augustusGene,79 chainHg19,460 chainHg19,500 chainHg19,523 chainHg19,538 chainHg19,798 chainHg19,853 chainHg19,911 chainMm10,460 chainMm10,500 chainMm10,523 chainMm10,538 chainMm10,798 chainMm10,853 chainMm10,911 chainNetHg19,463 chainNetHg19,503 chainNetHg19,526 chainNetHg19,541 chainNetHg19,801 chainNetHg19,856 chainNetHg19,914 chainNetMm10,463 chainNetMm10,503 chainNetMm10,526 chainNetMm10,541 chainNetMm10,801 chainNetMm10,856 chainNetMm10,914 cpgIslandExt,165 cpgIslandExt,548 cpgIslandExt,550 cpgIslandExtUnmasked,168 cpgIslandExtUnmasked,551 cpgIslandExtUnmasked,553 cpgIslandSuper,165 cpgIslandSuper,548 cpgIslandSuper,550 ensGene,87 gap,34 genscan,35 genscan,37 gold,36 microsat,21 nestedRepeats,125 netHg19,460 netHg19,500 netHg19,523 netHg19,538 netHg19,798 netHg19,853 netHg19,911 netMm10,460 netMm10,500 netMm10,523 netMm10,538 netMm10,798 netMm10,853 netMm10,911 quality,90 rmsk,53 rmsk,55 windowmaskerSdust,18 aspects quality,66 assembled gold,23 assemblies augustusGene,196 augustusGene,237 chainHg19,317 chainHg19,579 chainMm10,317 chainMm10,579 chainNetHg19,320 chainNetHg19,582 chainNetMm10,320 chainNetMm10,582 netHg19,317 netHg19,579 netMm10,317 netMm10,579 rmsk,107 assembly augustusGene,197 chainHg19,149 chainHg19,156 chainHg19,304 chainMm10,149 chainMm10,156 chainMm10,304 chainNetHg19,152 chainNetHg19,159 chainNetHg19,307 chainNetMm10,152 chainNetMm10,159 chainNetMm10,307 ensemblGeneScaffold,2 ensemblGeneScaffold,6 ensemblGeneScaffold,24 gap,14 gap,76 gold,1 gold,2 gold,14 netHg19,149 netHg19,156 netHg19,304 netMm10,149 netMm10,156 netMm10,304 quality,25 quality,95 assembly.2bit cpgIslandExt,412 cpgIslandExtUnmasked,415 cpgIslandSuper,412 assembly.txt ensemblGeneScaffold,73 associated cpgIslandExt,18 cpgIslandExt,38 cpgIslandExt,510 cpgIslandExtUnmasked,21 cpgIslandExtUnmasked,41 cpgIslandExtUnmasked,513 cpgIslandSuper,18 cpgIslandSuper,38 cpgIslandSuper,510 gc5BaseBw,34 rmsk,224 simpleRepeat,51 astashyn xenoRefGene,325 at chainHg19,417 chainHg19,793 chainHg19,915 chainHg19,950 chainHg19,955 chainHg19,996 chainMm10,417 chainMm10,793 chainMm10,915 chainMm10,950 chainMm10,955 chainMm10,996 chainNetHg19,420 chainNetHg19,796 chainNetHg19,918 chainNetHg19,953 chainNetHg19,958 chainNetHg19,999 chainNetMm10,420 chainNetMm10,796 chainNetMm10,918 chainNetMm10,953 chainNetMm10,958 chainNetMm10,999 cpgIslandExt,155 cpgIslandExt,218 cpgIslandExt,235 cpgIslandExtUnmasked,158 cpgIslandExtUnmasked,221 cpgIslandExtUnmasked,238 cpgIslandSuper,155 cpgIslandSuper,218 cpgIslandSuper,235 microsat,28 microsat,77 netHg19,417 netHg19,793 netHg19,915 netHg19,950 netHg19,955 netHg19,996 netMm10,417 netMm10,793 netMm10,915 netMm10,950 netMm10,955 netMm10,996 quality,28 rmsk,243 rmsk,267 xenoRefGene,91 xenoRefGene,266 xenoRefGene,282 augustus augustusGene,1 augustusGene,2 augustusGene,22 augustusGene,148 augustusGene,256 auml windowmaskerSdust,95 available augustusGene,239 cpgIslandExt,543 cpgIslandExtUnmasked,546 cpgIslandSuper,543 ensGene,82 ensGene,122 nestedRepeats,259 nestedRepeats,276 rmsk,73 windowmaskerSdust,40 average nestedRepeats,186 nestedRepeats,221 averaged quality,51 awk cpgIslandExt,424 cpgIslandExtUnmasked,427 cpgIslandSuper,424 axt chainHg19,600 chainHg19,607 chainMm10,600 chainMm10,607 chainNetHg19,603 chainNetHg19,610 chainNetMm10,603 chainNetMm10,610 netHg19,600 netHg19,607 netMm10,600 netMm10,607 axtchain chainHg19,612 chainHg19,698 chainHg19,946 chainMm10,612 chainMm10,698 chainMm10,946 chainNetHg19,615 chainNetHg19,701 chainNetHg19,949 chainNetMm10,615 chainNetMm10,701 chainNetMm10,949 netHg19,612 netHg19,698 netHg19,946 netMm10,612 netMm10,698 netMm10,946 back chainHg19,592 chainMm10,592 chainNetHg19,595 chainNetMm10,595 netHg19,592 netMm10,592 baertsch augustusGene,290 chainHg19,984 chainHg19,1042 chainHg19,1088 chainMm10,984 chainMm10,1042 chainMm10,1088 chainNetHg19,987 chainNetHg19,1045 chainNetHg19,1091 chainNetMm10,987 chainNetMm10,1045 chainNetMm10,1091 netHg19,984 netHg19,1042 netHg19,1088 netMm10,984 netMm10,1042 netMm10,1088 band cytoBandIdeo,2 barker ensGene,170 ensemblGeneScaffold,109 base cpgIslandExt,46 cpgIslandExt,53 cpgIslandExt,234 cpgIslandExtUnmasked,49 cpgIslandExtUnmasked,56 cpgIslandExtUnmasked,237 cpgIslandSuper,46 cpgIslandSuper,53 cpgIslandSuper,234 quality,22 quality,39 rmsk,217 rmsk,219 rmsk,222 xenoRefGene,249 xenoRefGene,257 xenoRefGene,269 based augustusGene,28 chainHg19,320 chainHg19,346 chainMm10,320 chainMm10,346 chainNetHg19,323 chainNetHg19,349 chainNetMm10,323 chainNetMm10,349 genscan,26 gold,52 netHg19,320 netHg19,346 netMm10,320 netMm10,346 bases cpgIslandExt,7 cpgIslandExt,353 cpgIslandExtUnmasked,10 cpgIslandExtUnmasked,356 cpgIslandSuper,7 cpgIslandSuper,353 gc5BaseBw,25 basis cpgIslandExt,289 cpgIslandExtUnmasked,292 cpgIslandSuper,289 be augustusGene,99 chainHg19,106 chainHg19,427 chainMm10,106 chainMm10,427 chainNetHg19,109 chainNetHg19,430 chainNetMm10,109 chainNetMm10,430 cpgIslandExt,37 cpgIslandExt,70 cpgIslandExt,187 cpgIslandExt,513 cpgIslandExt,532 cpgIslandExt,561 cpgIslandExt,572 cpgIslandExtUnmasked,40 cpgIslandExtUnmasked,73 cpgIslandExtUnmasked,190 cpgIslandExtUnmasked,516 cpgIslandExtUnmasked,535 cpgIslandExtUnmasked,564 cpgIslandExtUnmasked,575 cpgIslandSuper,37 cpgIslandSuper,70 cpgIslandSuper,187 cpgIslandSuper,513 cpgIslandSuper,532 cpgIslandSuper,561 cpgIslandSuper,572 ensGene,61 ensGene,104 ensGene,138 gap,25 gc5BaseBw,41 microsat,19 microsat,39 nestedRepeats,269 nestedRepeats,291 netHg19,106 netHg19,427 netMm10,106 netMm10,427 quality,56 rmsk,278 rmsk,284 rmsk,298 simpleRepeat,44 xenoRefGene,86 because cpgIslandExt,61 cpgIslandExt,107 cpgIslandExtUnmasked,64 cpgIslandExtUnmasked,110 cpgIslandSuper,61 cpgIslandSuper,107 bed3 windowmaskerSdust,76 been chainHg19,568 chainMm10,568 chainNetHg19,571 chainNetMm10,571 nestedRepeats,89 netHg19,568 netMm10,568 rmsk,70 rmsk,109 before chainHg19,900 chainMm10,900 chainNetHg19,903 chainNetMm10,903 netHg19,900 netMm10,900 below chainHg19,674 chainMm10,674 chainNetHg19,677 chainNetMm10,677 ensGene,54 ensemblGeneScaffold,97 genscan,154 genscan,168 nestedRepeats,68 netHg19,674 netMm10,674 rmsk,104 benson microsat,102 microsat,112 microsat,114 simpleRepeat,64 simpleRepeat,72 simpleRepeat,74 best chainHg19,265 chainHg19,510 chainMm10,265 chainMm10,510 chainNetHg19,268 chainNetHg19,513 chainNetMm10,268 chainNetMm10,513 netHg19,265 netHg19,510 netMm10,265 netMm10,510 xenoRefGene,264 between chainHg19,51 chainHg19,617 chainHg19,847 chainMm10,51 chainMm10,617 chainMm10,847 chainNetHg19,54 chainNetHg19,620 chainNetHg19,850 chainNetMm10,54 chainNetMm10,620 chainNetMm10,850 gap,86 gold,46 gold,87 gold,92 netHg19,51 netHg19,617 netHg19,847 netMm10,51 netMm10,617 netMm10,847 binary cpgIslandExt,570 cpgIslandExtUnmasked,573 cpgIslandSuper,570 biocomput chainHg19,1035 chainMm10,1035 chainNetHg19,1038 chainNetMm10,1038 netHg19,1035 netMm10,1035 bioinformatics augustusGene,307 augustusGene,332 windowmaskerSdust,106 biol cpgIslandExt,615 cpgIslandExtUnmasked,618 cpgIslandSuper,615 genscan,222 biology genscan,200 birds augustusGene,203 birney ensGene,172 ensemblGeneScaffold,111 black ensemblGeneScaffold,32 gap,35 gap,70 blast-like xenoRefGene,303 blastz chainHg19,912 chainHg19,1099 chainMm10,912 chainMm10,1099 chainNetHg19,915 chainNetHg19,1102 chainNetMm10,915 chainNetMm10,1102 netHg19,912 netHg19,1099 netMm10,912 netMm10,1099 blat xenoRefGene,225 blat--the xenoRefGene,302 blocks chainHg19,44 chainHg19,639 chainHg19,660 chainMm10,44 chainMm10,639 chainMm10,660 chainNetHg19,47 chainNetHg19,642 chainNetHg19,663 chainNetMm10,47 chainNetMm10,642 chainNetMm10,663 gold,97 gold,124 netHg19,44 netHg19,639 netHg19,660 netMm10,44 netMm10,639 netMm10,660 blog cpgIslandExt,553 cpgIslandExtUnmasked,556 cpgIslandSuper,553 ensGene,131 both chainHg19,95 chainHg19,115 chainHg19,168 chainHg19,890 chainMm10,95 chainMm10,115 chainMm10,168 chainMm10,890 chainNetHg19,98 chainNetHg19,118 chainNetHg19,171 chainNetHg19,893 chainNetMm10,98 chainNetMm10,118 chainNetMm10,171 chainNetMm10,893 netHg19,95 netHg19,115 netHg19,168 netHg19,890 netMm10,95 netMm10,115 netMm10,168 netMm10,890 xenoRefGene,124 xenoRefGene,195 bothgap chainHg19,741 chainMm10,741 chainNetHg19,744 chainNetMm10,744 netHg19,741 netMm10,741 boundaries gold,72 box chainHg19,370 chainHg19,452 chainMm10,370 chainMm10,452 chainNetHg19,373 chainNetHg19,455 chainNetMm10,373 chainNetMm10,455 gap,71 netHg19,370 netHg19,452 netMm10,370 netMm10,452 xenoRefGene,214 boxes chainHg19,121 chainHg19,131 chainHg19,441 chainMm10,121 chainMm10,131 chainMm10,441 chainNetHg19,124 chainNetHg19,134 chainNetHg19,444 chainNetMm10,124 chainNetMm10,134 chainNetMm10,444 gap,36 nestedRepeats,126 netHg19,121 netHg19,131 netHg19,441 netMm10,121 netMm10,131 netMm10,441 bp cpgIslandExt,272 cpgIslandExtUnmasked,275 cpgIslandSuper,272 branch-point augustusGene,55 bridge gold,122 bridged gap,60 brown gold,82 gold,96 xenoRefGene,319 browser chainHg19,970 chainMm10,970 chainNetHg19,973 chainNetMm10,973 cpgIslandExt,522 cpgIslandExtUnmasked,525 cpgIslandSuper,522 ensGene,67 nestedRepeats,243 netHg19,970 netMm10,970 built augustusGene,51 augustusGene,67 burge genscan,22 genscan,146 genscan,166 genscan,173 genscan,180 genscan,207 but chainHg19,543 chainMm10,543 chainNetHg19,546 chainNetMm10,546 netHg19,543 netMm10,543 rmsk,311 button chainHg19,341 chainMm10,341 chainNetHg19,344 chainNetMm10,344 netHg19,341 netMm10,341 by augustusGene,147 augustusGene,266 augustusGene,282 chainHg19,108 chainHg19,124 chainHg19,311 chainHg19,374 chainHg19,411 chainHg19,429 chainHg19,807 chainHg19,919 chainHg19,938 chainHg19,958 chainHg19,982 chainHg19,1003 chainMm10,108 chainMm10,124 chainMm10,311 chainMm10,374 chainMm10,411 chainMm10,429 chainMm10,807 chainMm10,919 chainMm10,938 chainMm10,958 chainMm10,982 chainMm10,1003 chainNetHg19,111 chainNetHg19,127 chainNetHg19,314 chainNetHg19,377 chainNetHg19,414 chainNetHg19,432 chainNetHg19,810 chainNetHg19,922 chainNetHg19,941 chainNetHg19,961 chainNetHg19,985 chainNetHg19,1006 chainNetMm10,111 chainNetMm10,127 chainNetMm10,314 chainNetMm10,377 chainNetMm10,414 chainNetMm10,432 chainNetMm10,810 chainNetMm10,922 chainNetMm10,941 chainNetMm10,961 chainNetMm10,985 chainNetMm10,1006 cpgIslandExt,49 cpgIslandExt,194 cpgIslandExt,229 cpgIslandExt,406 cpgIslandExt,596 cpgIslandExtUnmasked,52 cpgIslandExtUnmasked,197 cpgIslandExtUnmasked,232 cpgIslandExtUnmasked,409 cpgIslandExtUnmasked,599 cpgIslandSuper,49 cpgIslandSuper,194 cpgIslandSuper,229 cpgIslandSuper,406 cpgIslandSuper,596 ensGene,15 ensemblGeneScaffold,61 gc5BaseBw,81 genscan,20 genscan,88 genscan,121 gold,75 microsat,110 nestedRepeats,8 nestedRepeats,91 nestedRepeats,129 netHg19,108 netHg19,124 netHg19,311 netHg19,374 netHg19,411 netHg19,429 netHg19,807 netHg19,919 netHg19,938 netHg19,958 netHg19,982 netHg19,1003 netMm10,108 netMm10,124 netMm10,311 netMm10,374 netMm10,411 netMm10,429 netMm10,807 netMm10,919 netMm10,938 netMm10,958 netMm10,982 netMm10,1003 quality,105 rmsk,4 rmsk,14 rmsk,50 simpleRepeat,6 simpleRepeat,22 simpleRepeat,70 windowmaskerSdust,6 windowmaskerSdust,20 xenoRefGene,100 xenoRefGene,105 xenoRefGene,169 xenoRefGene,187 xenoRefGene,193 xenoRefGene,289 xenoRefGene,294 c cpgIslandExt,44 cpgIslandExt,389 cpgIslandExtUnmasked,47 cpgIslandExtUnmasked,392 cpgIslandSuper,44 cpgIslandSuper,389 gc5BaseBw,23 genscan,181 genscan,208 windowmaskerSdust,30 c-114100-125-31 chainHg19,669 chainMm10,669 chainNetHg19,672 chainNetMm10,672 netHg19,669 netMm10,669 caenorhabditis augustusGene,212 calculated cpgIslandExt,369 cpgIslandExtUnmasked,372 cpgIslandSuper,369 calculation cpgIslandExt,399 cpgIslandExtUnmasked,402 cpgIslandSuper,399 california chainHg19,954 chainHg19,1000 chainMm10,954 chainMm10,1000 chainNetHg19,957 chainNetHg19,1003 chainNetMm10,957 chainNetMm10,1003 netHg19,954 netHg19,1000 netMm10,954 netMm10,1000 cameron ensGene,174 ensemblGeneScaffold,113 can augustusGene,98 chainHg19,90 chainHg19,105 chainMm10,90 chainMm10,105 chainNetHg19,93 chainNetHg19,108 chainNetMm10,93 chainNetMm10,108 cpgIslandExt,512 cpgIslandExt,530 cpgIslandExt,560 cpgIslandExt,571 cpgIslandExtUnmasked,515 cpgIslandExtUnmasked,533 cpgIslandExtUnmasked,563 cpgIslandExtUnmasked,574 cpgIslandSuper,512 cpgIslandSuper,530 cpgIslandSuper,560 cpgIslandSuper,571 ensGene,60 ensGene,103 ensGene,137 netHg19,90 netHg19,105 netMm10,90 netMm10,105 rmsk,116 simpleRepeat,35 xenoRefGene,85 cases chainHg19,190 chainHg19,398 chainMm10,190 chainMm10,398 chainNetHg19,193 chainNetHg19,401 chainNetMm10,193 chainNetMm10,401 netHg19,190 netHg19,398 netMm10,190 netMm10,398 categorized chainHg19,499 chainMm10,499 chainNetHg19,502 chainNetMm10,502 netHg19,499 netMm10,499 cauldron chainHg19,1052 chainMm10,1052 chainNetHg19,1055 chainNetMm10,1055 netHg19,1052 netMm10,1052 cause chainHg19,481 chainMm10,481 chainNetHg19,484 chainNetMm10,484 netHg19,481 netMm10,481 caused chainHg19,107 chainMm10,107 chainNetHg19,110 chainNetMm10,110 netHg19,107 netMm10,107 cdna augustusGene,299 cerevisiae augustusGene,222 certain nestedRepeats,294 rmsk,301 cg cpgIslandExt,243 cpgIslandExt,281 cpgIslandExt,339 cpgIslandExtUnmasked,246 cpgIslandExtUnmasked,284 cpgIslandExtUnmasked,342 cpgIslandSuper,243 cpgIslandSuper,281 cpgIslandSuper,339 chain chainHg19,2 chainHg19,27 chainHg19,57 chainHg19,60 chainHg19,118 chainHg19,268 chainHg19,309 chainHg19,404 chainHg19,459 chainHg19,563 chainHg19,767 chainHg19,810 chainHg19,821 chainHg19,829 chainHg19,834 chainHg19,857 chainHg19,866 chainMm10,2 chainMm10,27 chainMm10,57 chainMm10,60 chainMm10,118 chainMm10,268 chainMm10,309 chainMm10,404 chainMm10,459 chainMm10,563 chainMm10,767 chainMm10,810 chainMm10,821 chainMm10,829 chainMm10,834 chainMm10,857 chainMm10,866 chainNetHg19,2 chainNetHg19,9 chainNetHg19,30 chainNetHg19,60 chainNetHg19,63 chainNetHg19,121 chainNetHg19,271 chainNetHg19,312 chainNetHg19,407 chainNetHg19,462 chainNetHg19,566 chainNetHg19,770 chainNetHg19,813 chainNetHg19,824 chainNetHg19,832 chainNetHg19,837 chainNetHg19,860 chainNetHg19,869 chainNetHg19Viewchain,1 chainNetHg19Viewchain,7 chainNetHg19Viewnet,7 chainNetMm10,2 chainNetMm10,9 chainNetMm10,30 chainNetMm10,60 chainNetMm10,63 chainNetMm10,121 chainNetMm10,271 chainNetMm10,312 chainNetMm10,407 chainNetMm10,462 chainNetMm10,566 chainNetMm10,770 chainNetMm10,813 chainNetMm10,824 chainNetMm10,832 chainNetMm10,837 chainNetMm10,860 chainNetMm10,869 chainNetMm10Viewchain,1 chainNetMm10Viewchain,7 chainNetMm10Viewnet,7 netHg19,27 netHg19,57 netHg19,60 netHg19,118 netHg19,268 netHg19,309 netHg19,404 netHg19,459 netHg19,563 netHg19,767 netHg19,810 netHg19,821 netHg19,829 netHg19,834 netHg19,857 netHg19,866 netMm10,27 netMm10,57 netMm10,60 netMm10,118 netMm10,268 netMm10,309 netMm10,404 netMm10,459 netMm10,563 netMm10,767 netMm10,810 netMm10,821 netMm10,829 netMm10,834 netMm10,857 netMm10,866 chained chainHg19,8 chainMm10,8 chainnet chainHg19,784 chainHg19,989 chainMm10,784 chainMm10,989 chainNetHg19,787 chainNetHg19,992 chainNetMm10,787 chainNetMm10,992 netHg19,784 netHg19,989 netMm10,784 netMm10,989 chains chainHg19,193 chainHg19,204 chainHg19,215 chainHg19,314 chainHg19,353 chainHg19,386 chainHg19,391 chainHg19,413 chainHg19,425 chainHg19,432 chainHg19,489 chainHg19,657 chainHg19,672 chainHg19,686 chainHg19,755 chainHg19,776 chainHg19,791 chainHg19,851 chainHg19,882 chainHg19,977 chainMm10,193 chainMm10,204 chainMm10,215 chainMm10,314 chainMm10,353 chainMm10,386 chainMm10,391 chainMm10,413 chainMm10,425 chainMm10,432 chainMm10,489 chainMm10,657 chainMm10,672 chainMm10,686 chainMm10,755 chainMm10,776 chainMm10,791 chainMm10,851 chainMm10,882 chainMm10,977 chainNetHg19,196 chainNetHg19,207 chainNetHg19,218 chainNetHg19,317 chainNetHg19,356 chainNetHg19,389 chainNetHg19,394 chainNetHg19,416 chainNetHg19,428 chainNetHg19,435 chainNetHg19,492 chainNetHg19,660 chainNetHg19,675 chainNetHg19,689 chainNetHg19,758 chainNetHg19,779 chainNetHg19,794 chainNetHg19,854 chainNetHg19,885 chainNetHg19,980 chainNetMm10,196 chainNetMm10,207 chainNetMm10,218 chainNetMm10,317 chainNetMm10,356 chainNetMm10,389 chainNetMm10,394 chainNetMm10,416 chainNetMm10,428 chainNetMm10,435 chainNetMm10,492 chainNetMm10,660 chainNetMm10,675 chainNetMm10,689 chainNetMm10,758 chainNetMm10,779 chainNetMm10,794 chainNetMm10,854 chainNetMm10,885 chainNetMm10,980 netHg19,193 netHg19,204 netHg19,215 netHg19,314 netHg19,353 netHg19,386 netHg19,391 netHg19,413 netHg19,425 netHg19,432 netHg19,489 netHg19,657 netHg19,672 netHg19,686 netHg19,755 netHg19,776 netHg19,791 netHg19,851 netHg19,882 netHg19,977 netMm10,193 netMm10,204 netMm10,215 netMm10,314 netMm10,353 netMm10,386 netMm10,391 netMm10,413 netMm10,425 netMm10,432 netMm10,489 netMm10,657 netMm10,672 netMm10,686 netMm10,755 netMm10,776 netMm10,791 netMm10,851 netMm10,882 netMm10,977 change cpgIslandExt,210 cpgIslandExtUnmasked,213 cpgIslandSuper,210 changed rmsk,285 check chainHg19,336 chainMm10,336 chainNetHg19,339 chainNetMm10,339 netHg19,336 netMm10,336 chen ensGene,176 ensemblGeneScaffold,115 chiaromonte chainHg19,1022 chainMm10,1022 chainNetHg19,1025 chainNetMm10,1025 netHg19,1022 netMm10,1022 chicken augustusGene,204 augustusGene,262 choose augustusGene,171 cpgIslandExt,581 cpgIslandExtUnmasked,584 cpgIslandSuper,581 chr4 chainHg19,368 chainMm10,368 chainNetHg19,371 chainNetMm10,371 netHg19,368 netMm10,368 chris genscan,21 genscan,172 chromosome chainHg19,245 chainHg19,323 chainHg19,348 chainHg19,356 chainHg19,366 chainHg19,375 chainHg19,522 chainHg19,537 chainHg19,553 chainHg19,621 chainHg19,626 chainMm10,245 chainMm10,323 chainMm10,348 chainMm10,356 chainMm10,366 chainMm10,375 chainMm10,522 chainMm10,537 chainMm10,553 chainMm10,621 chainMm10,626 chainNetHg19,248 chainNetHg19,326 chainNetHg19,351 chainNetHg19,359 chainNetHg19,369 chainNetHg19,378 chainNetHg19,525 chainNetHg19,540 chainNetHg19,556 chainNetHg19,624 chainNetHg19,629 chainNetMm10,248 chainNetMm10,326 chainNetMm10,351 chainNetMm10,359 chainNetMm10,369 chainNetMm10,378 chainNetMm10,525 chainNetMm10,540 chainNetMm10,556 chainNetMm10,624 chainNetMm10,629 cytoBandIdeo,1 netHg19,245 netHg19,323 netHg19,348 netHg19,356 netHg19,366 netHg19,375 netHg19,522 netHg19,537 netHg19,553 netHg19,621 netHg19,626 netMm10,245 netMm10,323 netMm10,348 netMm10,356 netMm10,366 netMm10,375 netMm10,522 netMm10,537 netMm10,553 netMm10,621 netMm10,626 chromosome-based chainHg19,316 chainMm10,316 chainNetHg19,319 chainNetMm10,319 netHg19,316 netMm10,316 circle rmsk,202 cited cpgIslandExt,374 cpgIslandExtUnmasked,377 cpgIslandSuper,374 clark ensGene,178 ensemblGeneScaffold,117 class rmsk,199 rmsk,253 classes rmsk,150 classification rmsk,266 rmsk,282 clawson gc5BaseBw,83 quality,107 click chainHg19,449 chainHg19,463 chainMm10,449 chainMm10,463 chainNetHg19,452 chainNetHg19,466 chainNetMm10,452 chainNetMm10,466 gc5BaseBw,56 netHg19,449 netHg19,463 netMm10,449 netMm10,463 quality,71 xenoRefGene,108 xenoRefGene,212 clipped nestedRepeats,224 clone gap,92 closed gap,26 closest augustusGene,241 cm xenoRefGene,330 code quality,102 windowmaskerSdust,34 coding simpleRepeat,38 xenoRefGene,210 codon genscan,100 genscan,122 xenoRefGene,136 xenoRefGene,143 xenoRefGene,158 xenoRefGene,188 codons genscan,89 genscan,93 xenoRefGene,163 xenoRefGene,170 collapsed nestedRepeats,173 collection xenoRefGene,31 color chainHg19,344 chainMm10,344 chainNetHg19,347 chainNetMm10,347 genscan,86 genscan,96 netHg19,344 netMm10,344 rmsk,207 xenoRefGene,56 xenoRefGene,167 coloration gold,83 colored chainHg19,319 chainMm10,319 chainNetHg19,322 chainNetMm10,322 netHg19,319 netMm10,319 coloring chainHg19,335 chainMm10,335 chainNetHg19,338 chainNetMm10,338 genscan,116 netHg19,335 netMm10,335 xenoRefGene,137 xenoRefGene,144 xenoRefGene,182 colors xenoRefGene,79 xenoRefGene,159 column nestedRepeats,107 combined rmsk,232 command cpgIslandExt,409 cpgIslandExt,503 cpgIslandExtUnmasked,412 cpgIslandExtUnmasked,506 cpgIslandSuper,409 cpgIslandSuper,503 common cpgIslandExt,30 cpgIslandExtUnmasked,33 cpgIslandSuper,30 comparative chainHg19,10 chainMm10,10 chainNetHg19,13 chainNetHg19Viewchain,11 chainNetHg19Viewnet,11 chainNetMm10,13 chainNetMm10Viewchain,11 chainNetMm10Viewnet,11 netHg19,10 netMm10,10 compare xenoRefGene,153 comparison genscan,109 complete genscan,213 completely xenoRefGene,135 complex chainHg19,161 chainMm10,161 chainNetHg19,164 chainNetMm10,164 netHg19,161 netMm10,161 complexity nestedRepeats,40 rmsk,30 rmsk,182 components gold,126 compositional genscan,41 computational genscan,196 conditional augustusGene,118 configuration chainHg19,308 chainMm10,308 chainNetHg19,311 chainNetMm10,311 gc5BaseBw,60 gc5BaseBw,69 genscan,64 genscan,84 nestedRepeats,114 netHg19,308 netMm10,308 quality,74 quality,82 rmsk,138 xenoRefGene,44 configured gc5BaseBw,42 quality,57 xenoRefGene,87 constructed cpgIslandExt,322 cpgIslandExt,495 cpgIslandExtUnmasked,325 cpgIslandExtUnmasked,498 cpgIslandSuper,322 cpgIslandSuper,495 construction cpgIslandExt,311 cpgIslandExtUnmasked,314 cpgIslandSuper,311 contained chainHg19,883 chainMm10,883 chainNetHg19,886 chainNetMm10,886 netHg19,883 netMm10,883 contains gap,77 xenoRefGene,140 content augustusGene,71 cpgIslandExt,263 cpgIslandExtUnmasked,266 cpgIslandSuper,263 gc5BaseBw,31 context gap,95 contig ensemblGeneScaffold,53 gap,97 gold,71 gold,140 contigs ensemblGeneScaffold,25 gap,48 gap,88 gold,25 gold,29 gold,47 gold,64 gold,88 gold,105 controls cpgIslandExt,217 cpgIslandExtUnmasked,220 cpgIslandSuper,217 xenoRefGene,90 conventions chainHg19,306 chainMm10,306 chainNetHg19,309 chainNetMm10,309 genscan,62 genscan,70 nestedRepeats,112 netHg19,306 netMm10,306 rmsk,136 xenoRefGene,42 xenoRefGene,50 converted chainHg19,598 chainMm10,598 chainNetHg19,601 chainNetMm10,601 netHg19,598 netMm10,598 coordinates ensemblGeneScaffold,20 copies microsat,80 count cpgIslandExt,334 cpgIslandExt,357 cpgIslandExtUnmasked,337 cpgIslandExtUnmasked,360 cpgIslandSuper,334 cpgIslandSuper,357 covered chainHg19,806 chainMm10,806 chainNetHg19,809 chainNetMm10,809 netHg19,806 netMm10,806 cox ensGene,180 ensemblGeneScaffold,119 cpg cpgIslandExt,1 cpgIslandExt,3 cpgIslandExt,15 cpgIslandExt,26 cpgIslandExt,55 cpgIslandExt,147 cpgIslandExt,176 cpgIslandExt,225 cpgIslandExt,316 cpgIslandExt,319 cpgIslandExt,333 cpgIslandExt,346 cpgIslandExt,351 cpgIslandExt,356 cpgIslandExt,367 cpgIslandExt,382 cpgIslandExt,385 cpgIslandExt,506 cpgIslandExt,608 cpgIslandExtUnmasked,2 cpgIslandExtUnmasked,3 cpgIslandExtUnmasked,18 cpgIslandExtUnmasked,29 cpgIslandExtUnmasked,58 cpgIslandExtUnmasked,150 cpgIslandExtUnmasked,179 cpgIslandExtUnmasked,228 cpgIslandExtUnmasked,319 cpgIslandExtUnmasked,322 cpgIslandExtUnmasked,336 cpgIslandExtUnmasked,349 cpgIslandExtUnmasked,354 cpgIslandExtUnmasked,359 cpgIslandExtUnmasked,370 cpgIslandExtUnmasked,385 cpgIslandExtUnmasked,388 cpgIslandExtUnmasked,509 cpgIslandExtUnmasked,611 cpgIslandSuper,1 cpgIslandSuper,3 cpgIslandSuper,15 cpgIslandSuper,26 cpgIslandSuper,55 cpgIslandSuper,147 cpgIslandSuper,176 cpgIslandSuper,225 cpgIslandSuper,316 cpgIslandSuper,319 cpgIslandSuper,333 cpgIslandSuper,346 cpgIslandSuper,351 cpgIslandSuper,356 cpgIslandSuper,367 cpgIslandSuper,382 cpgIslandSuper,385 cpgIslandSuper,506 cpgIslandSuper,608 cpg_lh cpgIslandExt,418 cpgIslandExt,558 cpgIslandExt,568 cpgIslandExt,580 cpgIslandExtUnmasked,421 cpgIslandExtUnmasked,561 cpgIslandExtUnmasked,571 cpgIslandExtUnmasked,583 cpgIslandSuper,418 cpgIslandSuper,558 cpgIslandSuper,568 cpgIslandSuper,580 cpg_lh.err cpgIslandExt,423 cpgIslandExtUnmasked,426 cpgIslandSuper,423 cpgisland.bed cpgIslandExt,489 cpgIslandExtUnmasked,492 cpgIslandSuper,489 cpgislandext cpgIslandExt,566 cpgIslandExtUnmasked,569 cpgIslandSuper,566 cpgs cpgIslandExt,115 cpgIslandExt,152 cpgIslandExtUnmasked,118 cpgIslandExtUnmasked,155 cpgIslandSuper,115 cpgIslandSuper,152 create windowmaskerSdust,48 created chainHg19,981 chainMm10,981 chainNetHg19,984 chainNetMm10,984 ensemblGeneScaffold,67 microsat,89 netHg19,981 netMm10,981 rmsk,13 creates chainHg19,631 chainMm10,631 chainNetHg19,634 chainNetMm10,634 netHg19,631 netMm10,631 credits augustusGene,247 chainHg19,907 chainMm10,907 chainNetHg19,910 chainNetMm10,910 cpgIslandExt,584 cpgIslandExtUnmasked,587 cpgIslandSuper,584 ensGene,145 ensemblGeneScaffold,98 gc5BaseBw,71 genscan,169 microsat,104 nestedRepeats,302 netHg19,907 netMm10,907 quality,84 rmsk,325 simpleRepeat,66 xenoRefGene,277 criteria cpgIslandExt,261 cpgIslandExtUnmasked,264 cpgIslandSuper,261 cruz chainHg19,957 chainHg19,1002 chainMm10,957 chainMm10,1002 chainNetHg19,960 chainNetHg19,1005 chainNetMm10,960 chainNetMm10,1005 netHg19,957 netHg19,1002 netMm10,957 netMm10,1002 cs cpgIslandExt,63 cpgIslandExt,101 cpgIslandExt,296 cpgIslandExtUnmasked,66 cpgIslandExtUnmasked,104 cpgIslandExtUnmasked,299 cpgIslandSuper,63 cpgIslandSuper,101 cpgIslandSuper,296 cuff ensGene,182 ensemblGeneScaffold,121 culex augustusGene,220 curated xenoRefGene,293 xenoRefGene,370 curator rmsk,261 curr nestedRepeats,384 nestedRepeats,406 rmsk,407 rmsk,429 current nestedRepeats,250 currently-viewed gold,69 curwen ensGene,184 ensemblGeneScaffold,123 cytosine cpgIslandExt,45 cpgIslandExtUnmasked,48 cpgIslandSuper,45 gc5BaseBw,24 d augustusGene,293 chainHg19,1049 chainHg19,1093 chainMm10,1049 chainMm10,1093 chainNetHg19,1052 chainNetHg19,1096 chainNetMm10,1052 chainNetMm10,1096 cpgIslandExt,438 cpgIslandExtUnmasked,441 cpgIslandSuper,438 ensGene,171 ensemblGeneScaffold,110 genscan,192 netHg19,1049 netHg19,1093 netMm10,1049 netMm10,1093 d501-4 xenoRefGene,388 d756-63 xenoRefGene,354 dark xenoRefGene,73 data cpgIslandExt,403 cpgIslandExt,493 cpgIslandExt,504 cpgIslandExt,525 cpgIslandExtUnmasked,406 cpgIslandExtUnmasked,496 cpgIslandExtUnmasked,507 cpgIslandExtUnmasked,528 cpgIslandSuper,403 cpgIslandSuper,493 cpgIslandSuper,504 cpgIslandSuper,525 ensGene,55 ensGene,59 ensGene,70 ensGene,102 gc5BaseBw,73 microsat,47 nestedRepeats,263 nestedRepeats,280 rmsk,126 rmsk,287 xenoRefGene,34 xenoRefGene,287 database chainHg19,973 chainMm10,973 chainNetHg19,976 chainNetMm10,976 ensGene,193 ensemblGeneScaffold,132 nestedRepeats,345 netHg19,973 netMm10,973 quality,97 rmsk,125 rmsk,368 xenoRefGene,352 xenoRefGene,373 xenoRefGene,386 david chainHg19,967 chainMm10,967 chainNetHg19,970 chainNetMm10,970 netHg19,967 netMm10,967 de augustusGene,303 deamination cpgIslandExt,110 cpgIslandExtUnmasked,113 cpgIslandSuper,110 dec chainMm10,4 chainMm10,66 chainMm10,300 chainNetMm10,5 chainNetMm10,69 chainNetMm10,303 chainNetMm10Viewchain,3 chainNetMm10Viewnet,3 nestedRepeats,389 nestedRepeats,411 netMm10,4 netMm10,66 netMm10,300 rmsk,412 rmsk,434 default chainHg19,312 chainMm10,312 chainNetHg19,315 chainNetMm10,315 cpgIslandExt,195 cpgIslandExtUnmasked,198 cpgIslandSuper,195 netHg19,312 netMm10,312 xenoRefGene,101 xenoRefGene,194 deletion chainHg19,145 chainHg19,1054 chainMm10,145 chainMm10,1054 chainNetHg19,148 chainNetHg19,1057 chainNetMm10,148 chainNetMm10,1057 netHg19,145 netHg19,1054 netMm10,145 netMm10,1054 rmsk,220 deletions chainHg19,113 chainHg19,176 chainMm10,113 chainMm10,176 chainNetHg19,116 chainNetHg19,179 chainNetMm10,116 chainNetMm10,179 netHg19,113 netHg19,176 netMm10,113 netMm10,176 dense gold,58 nestedRepeats,157 nestedRepeats,168 dependencies genscan,183 depicts gap,10 gold,62 windowmaskerSdust,15 derived chainHg19,757 chainMm10,757 chainNetHg19,760 chainNetMm10,760 netHg19,757 netMm10,757 described chainHg19,764 chainMm10,764 chainNetHg19,767 chainNetMm10,767 genscan,161 nestedRepeats,60 nestedRepeats,338 netHg19,764 netMm10,764 rmsk,96 rmsk,361 describes augustusGene,226 description augustusGene,12 chainHg19,12 chainHg19,769 chainMm10,12 chainMm10,769 chainNetHg19,15 chainNetHg19,772 chainNetMm10,15 chainNetMm10,772 cpgIslandExt,14 cpgIslandExtUnmasked,17 cpgIslandSuper,14 ensGene,9 ensGene,32 ensemblGeneScaffold,10 ensemblGeneScaffold,78 gap,7 gc5BaseBw,11 genscan,10 genscan,77 genscan,133 gold,8 microsat,10 nestedRepeats,14 netHg19,12 netHg19,769 netMm10,12 netMm10,769 quality,10 rmsk,9 simpleRepeat,11 windowmaskerSdust,12 xenoRefGene,10 xenoRefGene,97 descriptions augustusGene,91 detail genscan,164 detailed augustusGene,90 chainHg19,455 chainHg19,474 chainMm10,455 chainMm10,474 chainNetHg19,458 chainNetHg19,477 chainNetMm10,458 chainNetMm10,477 nestedRepeats,70 netHg19,455 netHg19,474 netMm10,455 netMm10,474 rmsk,37 details rmsk,119 determined windowmaskerSdust,19 determining chainHg19,479 chainMm10,479 chainNetHg19,482 chainNetMm10,482 netHg19,479 netMm10,479 dev cpgIslandExt,419 cpgIslandExtUnmasked,422 cpgIslandSuper,419 nestedRepeats,387 nestedRepeats,409 rmsk,410 rmsk,432 developed chainHg19,914 chainHg19,949 chainHg19,995 chainMm10,914 chainMm10,949 chainMm10,995 chainNetHg19,917 chainNetHg19,952 chainNetHg19,998 chainNetMm10,917 chainNetMm10,952 chainNetMm10,998 cpgIslandExt,595 cpgIslandExtUnmasked,598 cpgIslandSuper,595 netHg19,914 netHg19,949 netHg19,995 netMm10,914 netMm10,949 netMm10,995 dfam rmsk,112 di-nucleotide microsat,3 microsat,32 diekhans augustusGene,288 different augustusGene,39 augustusGene,85 augustusGene,96 augustusGene,144 augustusGene,155 augustusGene,179 augustusGene,193 chainHg19,554 chainMm10,554 chainNetHg19,557 chainNetMm10,557 ensGene,22 gc5BaseBw,50 genscan,54 netHg19,554 netMm10,554 quality,65 rmsk,149 dinucleotide cpgIslandExt,240 cpgIslandExtUnmasked,243 cpgIslandSuper,240 dinucleotides cpgIslandExt,282 cpgIslandExt,340 cpgIslandExtUnmasked,285 cpgIslandExtUnmasked,343 cpgIslandSuper,282 cpgIslandSuper,340 directly cpgIslandExt,534 cpgIslandExtUnmasked,537 cpgIslandSuper,534 ensGene,111 directory ensGene,86 ensGene,94 rmsk,134 discarded chainHg19,683 chainMm10,683 chainNetHg19,686 chainNetMm10,686 netHg19,683 netMm10,683 xenoRefGene,235 discussion nestedRepeats,364 rmsk,387 diseases simpleRepeat,54 display chainHg19,237 chainHg19,305 chainHg19,350 chainHg19,380 chainHg19,439 chainHg19,468 chainHg19,497 chainHg19,971 chainMm10,237 chainMm10,305 chainMm10,350 chainMm10,380 chainMm10,439 chainMm10,468 chainMm10,497 chainMm10,971 chainNetHg19,240 chainNetHg19,308 chainNetHg19,353 chainNetHg19,383 chainNetHg19,442 chainNetHg19,471 chainNetHg19,500 chainNetHg19,974 chainNetMm10,240 chainNetMm10,308 chainNetMm10,353 chainNetMm10,383 chainNetMm10,442 chainNetMm10,471 chainNetMm10,500 chainNetMm10,974 genscan,61 genscan,69 genscan,104 gold,120 nestedRepeats,111 netHg19,237 netHg19,305 netHg19,350 netHg19,380 netHg19,439 netHg19,468 netHg19,497 netHg19,971 netMm10,237 netMm10,305 netMm10,350 netMm10,380 netMm10,439 netMm10,468 netMm10,497 netMm10,971 quality,101 rmsk,135 rmsk,141 rmsk,212 xenoRefGene,41 xenoRefGene,49 xenoRefGene,78 xenoRefGene,114 xenoRefGene,157 displayed chainHg19,416 chainHg19,513 chainHg19,688 chainMm10,416 chainMm10,513 chainMm10,688 chainNetHg19,419 chainNetHg19,516 chainNetHg19,691 chainNetMm10,419 chainNetMm10,516 chainNetMm10,691 cpgIslandExt,204 cpgIslandExtUnmasked,207 cpgIslandSuper,204 ensemblGeneScaffold,30 gc5BaseBw,54 nestedRepeats,124 nestedRepeats,217 netHg19,416 netHg19,513 netHg19,688 netMm10,416 netMm10,513 netMm10,688 quality,69 xenoRefGene,202 displays chainHg19,120 chainMm10,120 chainNetHg19,123 chainNetMm10,123 cpgIslandExt,174 cpgIslandExtUnmasked,177 cpgIslandSuper,174 microsat,13 netHg19,120 netMm10,120 rmsk,145 simpleRepeat,14 dissertation augustusGene,105 distinguish cpgIslandExt,75 cpgIslandExtUnmasked,78 cpgIslandSuper,75 distinguished gold,74 distributions augustusGene,83 genscan,42 diverged chainHg19,906 chainMm10,906 chainNetHg19,909 chainNetMm10,909 nestedRepeats,212 netHg19,906 netMm10,906 dna chainHg19,1015 chainMm10,1015 chainNetHg19,1018 chainNetMm10,1018 cpgIslandExt,60 cpgIslandExt,79 cpgIslandExt,92 cpgIslandExtUnmasked,63 cpgIslandExtUnmasked,82 cpgIslandExtUnmasked,95 cpgIslandSuper,60 cpgIslandSuper,79 cpgIslandSuper,92 genscan,219 microsat,123 nestedRepeats,33 nestedRepeats,41 netHg19,1015 netMm10,1015 rmsk,23 rmsk,31 rmsk,174 rmsk,177 rmsk,257 simpleRepeat,83 do cpgIslandExt,140 cpgIslandExtUnmasked,143 cpgIslandSuper,140 ensemblGeneScaffold,44 doc rmsk,132 dollar cpgIslandExt,425 cpgIslandExt,427 cpgIslandExt,431 cpgIslandExt,433 cpgIslandExt,457 cpgIslandExt,459 cpgIslandExt,461 cpgIslandExt,463 cpgIslandExt,465 cpgIslandExt,468 cpgIslandExt,471 cpgIslandExt,476 cpgIslandExt,479 cpgIslandExt,481 cpgIslandExtUnmasked,428 cpgIslandExtUnmasked,430 cpgIslandExtUnmasked,434 cpgIslandExtUnmasked,436 cpgIslandExtUnmasked,460 cpgIslandExtUnmasked,462 cpgIslandExtUnmasked,464 cpgIslandExtUnmasked,466 cpgIslandExtUnmasked,468 cpgIslandExtUnmasked,471 cpgIslandExtUnmasked,474 cpgIslandExtUnmasked,479 cpgIslandExtUnmasked,482 cpgIslandExtUnmasked,484 cpgIslandSuper,425 cpgIslandSuper,427 cpgIslandSuper,431 cpgIslandSuper,433 cpgIslandSuper,457 cpgIslandSuper,459 cpgIslandSuper,461 cpgIslandSuper,463 cpgIslandSuper,465 cpgIslandSuper,468 cpgIslandSuper,471 cpgIslandSuper,476 cpgIslandSuper,479 cpgIslandSuper,481 done augustusGene,265 augustusGene,281 donor genscan,31 double chainHg19,128 chainHg19,157 chainMm10,128 chainMm10,157 chainNetHg19,131 chainNetHg19,160 chainNetMm10,131 chainNetMm10,160 netHg19,128 netHg19,157 netMm10,128 netMm10,157 double-lined chainHg19,217 chainMm10,217 chainNetHg19,220 chainNetMm10,220 netHg19,217 netMm10,217 double-sided chainHg19,102 chainMm10,102 chainNetHg19,105 chainNetMm10,105 netHg19,102 netMm10,102 down ensGene,186 ensemblGeneScaffold,125 download ensGene,93 ensGene,143 downloads ensGene,74 ensGene,85 rmsk,76 dr xenoRefGene,364 draft gap,91 gold,13 drawn gap,67 gold,116 drosophila augustusGene,213 due chainHg19,142 chainHg19,210 chainHg19,222 chainMm10,142 chainMm10,210 chainMm10,222 chainNetHg19,145 chainNetHg19,213 chainNetHg19,225 chainNetMm10,145 chainNetMm10,213 chainNetMm10,225 netHg19,142 netHg19,210 netHg19,222 netMm10,142 netMm10,210 netMm10,222 duplication chainHg19,1053 chainMm10,1053 chainNetHg19,1056 chainNetMm10,1056 cpgIslandExt,95 cpgIslandExtUnmasked,98 cpgIslandSuper,95 netHg19,1053 netMm10,1053 during chainHg19,811 chainMm10,811 chainNetHg19,814 chainNetMm10,814 gap,27 netHg19,811 netMm10,811 dynamic chainHg19,644 chainMm10,644 chainNetHg19,647 chainNetMm10,647 netHg19,644 netMm10,644 e ensGene,173 ensemblGeneScaffold,112 e.g chainHg19,367 chainMm10,367 chainNetHg19,370 chainNetMm10,370 netHg19,367 netMm10,367 each chainHg19,255 chainMm10,255 chainNetHg19,258 chainNetMm10,258 cpgIslandExt,239 cpgIslandExt,253 cpgIslandExtUnmasked,242 cpgIslandExtUnmasked,256 cpgIslandSuper,239 cpgIslandSuper,253 genscan,99 nestedRepeats,120 netHg19,255 netMm10,255 quality,21 quality,29 echtel1 ensGene,80 echtel1.fa windowmaskerSdust,62 windowmaskerSdust,71 editors genscan,195 either chainHg19,125 chainMm10,125 chainNetHg19,128 chainNetMm10,128 gap,50 netHg19,125 netMm10,125 rmsk,273 electronic nestedRepeats,348 rmsk,371 element rmsk,228 elements nestedRepeats,352 nestedRepeats,380 rmsk,3 rmsk,156 rmsk,164 rmsk,169 rmsk,176 rmsk,375 rmsk,403 elsevier genscan,202 em windowmaskerSdust,93 emerged chainHg19,817 chainMm10,817 chainNetHg19,820 chainNetMm10,820 netHg19,817 netMm10,817 end rmsk,245 ensembl ensGene,1 ensGene,3 ensGene,16 ensGene,38 ensGene,57 ensGene,151 ensGene,162 ensGene,191 ensemblGeneScaffold,1 ensemblGeneScaffold,3 ensemblGeneScaffold,17 ensemblGeneScaffold,62 ensemblGeneScaffold,70 ensemblGeneScaffold,84 ensemblGeneScaffold,101 ensemblGeneScaffold,130 ensgene.txt.gz ensGene,88 enter chainHg19,361 chainMm10,361 chainNetHg19,364 chainNetMm10,364 netHg19,361 netMm10,361 entire cpgIslandExt,301 cpgIslandExtUnmasked,304 cpgIslandSuper,301 windowmaskerSdust,37 ermolaeva xenoRefGene,327 et cpgIslandExt,377 cpgIslandExtUnmasked,380 cpgIslandSuper,377 ensGene,45 ensGene,188 ensemblGeneScaffold,90 ensemblGeneScaffold,127 xenoRefGene,337 evaluated cpgIslandExt,257 cpgIslandExtUnmasked,260 cpgIslandSuper,257 every chainHg19,270 chainMm10,270 chainNetHg19,273 chainNetMm10,273 netHg19,270 netMm10,270 evidence gold,56 evolution chainHg19,1050 chainMm10,1050 chainNetHg19,1053 chainNetMm10,1053 netHg19,1050 netMm10,1050 evolutionary cpgIslandExt,98 cpgIslandExtUnmasked,101 cpgIslandSuper,98 example rmsk,256 exception gap,19 exe cpgIslandExt,578 cpgIslandExtUnmasked,581 cpgIslandSuper,578 exist chainHg19,400 chainMm10,400 chainNetHg19,403 chainNetMm10,403 cpgIslandExt,179 cpgIslandExtUnmasked,182 cpgIslandSuper,179 gold,86 netHg19,400 netMm10,400 exon augustusGene,86 exons chainHg19,48 chainMm10,48 chainNetHg19,51 chainNetMm10,51 genscan,44 netHg19,48 netMm10,48 exp cpgIslandExt,381 cpgIslandExtUnmasked,384 cpgIslandSuper,381 expansions simpleRepeat,48 expected cpgIslandExt,285 cpgIslandExt,366 cpgIslandExtUnmasked,288 cpgIslandExtUnmasked,369 cpgIslandSuper,285 cpgIslandSuper,366 explanation gc5BaseBw,66 quality,79 explored cpgIslandExt,514 cpgIslandExtUnmasked,517 cpgIslandSuper,514 ensGene,62 expression cpgIslandExt,11 cpgIslandExt,146 cpgIslandExtUnmasked,14 cpgIslandExtUnmasked,149 cpgIslandSuper,11 cpgIslandSuper,146 extend rmsk,308 extracted nestedRepeats,23 f chainHg19,1023 chainMm10,1023 chainNetHg19,1026 chainNetMm10,1026 netHg19,1023 netMm10,1023 xenoRefGene,324 facilitate genscan,106 family rmsk,249 faq augustusGene,45 ensGene,28 genscan,60 nestedRepeats,298 rmsk,321 farrell xenoRefGene,329 feature chainHg19,241 chainMm10,241 chainNetHg19,244 chainNetMm10,244 genscan,129 netHg19,241 netMm10,241 xenoRefGene,145 xenoRefGene,178 features xenoRefGene,81 feb chainHg19,4 chainHg19,66 chainHg19,300 chainNetHg19,5 chainNetHg19,69 chainNetHg19,303 chainNetHg19Viewchain,3 chainNetHg19Viewnet,3 netHg19,4 netHg19,66 netHg19,300 fed chainHg19,610 chainMm10,610 chainNetHg19,613 chainNetMm10,613 netHg19,610 netMm10,610 ffer windowmaskerSdust,96 field augustusGene,120 file cpgIslandExt,583 cpgIslandExtUnmasked,586 cpgIslandSuper,583 windowmaskerSdust,77 files ensGene,78 fill chainHg19,841 chainHg19,874 chainMm10,841 chainMm10,874 chainNetHg19,844 chainNetHg19,877 chainNetMm10,844 chainNetMm10,877 netHg19,841 netHg19,874 netMm10,841 netMm10,874 filled chainHg19,409 chainHg19,428 chainHg19,823 chainHg19,896 chainMm10,409 chainMm10,428 chainMm10,823 chainMm10,896 chainNetHg19,412 chainNetHg19,431 chainNetHg19,826 chainNetHg19,899 chainNetMm10,412 chainNetMm10,431 chainNetMm10,826 chainNetMm10,899 netHg19,409 netHg19,428 netHg19,823 netHg19,896 netMm10,409 netMm10,428 netMm10,823 netMm10,896 filter chainHg19,373 chainMm10,373 chainNetHg19,376 chainNetMm10,376 genscan,82 netHg19,373 netMm10,373 final cpgIslandExt,89 cpgIslandExtUnmasked,92 cpgIslandSuper,89 find chainHg19,653 chainMm10,653 chainNetHg19,656 chainNetMm10,656 netHg19,653 netMm10,653 rmsk,117 finder microsat,94 microsat,107 microsat,118 simpleRepeat,25 simpleRepeat,78 finding augustusGene,306 chainHg19,280 chainMm10,280 chainNetHg19,283 chainNetMm10,283 netHg19,280 netMm10,280 finishing gap,29 first chainHg19,781 chainMm10,781 chainNetHg19,784 chainNetMm10,784 netHg19,781 netMm10,781 fish augustusGene,201 fit chainHg19,801 chainMm10,801 chainNetHg19,804 chainNetMm10,804 nestedRepeats,175 netHg19,801 netMm10,801 flag nestedRepeats,287 rmsk,294 flags nestedRepeats,289 rmsk,296 fly augustusGene,214 followed cpgIslandExt,47 cpgIslandExtUnmasked,50 cpgIslandSuper,47 following chainHg19,662 chainMm10,662 chainNetHg19,665 chainNetMm10,665 cpgIslandExt,260 cpgIslandExt,408 cpgIslandExtUnmasked,263 cpgIslandExtUnmasked,411 cpgIslandSuper,260 cpgIslandSuper,408 gap,79 genscan,81 netHg19,662 netMm10,662 windowmaskerSdust,56 follows genscan,67 xenoRefGene,47 for augustusGene,34 augustusGene,52 augustusGene,68 augustusGene,80 augustusGene,175 augustusGene,184 augustusGene,192 augustusGene,232 augustusGene,253 augustusGene,260 augustusGene,274 chainHg19,254 chainHg19,269 chainHg19,279 chainHg19,286 chainHg19,486 chainMm10,254 chainMm10,269 chainMm10,279 chainMm10,286 chainMm10,486 chainNetHg19,257 chainNetHg19,272 chainNetHg19,282 chainNetHg19,289 chainNetHg19,489 chainNetMm10,257 chainNetMm10,272 chainNetMm10,282 chainNetMm10,289 chainNetMm10,489 cpgIslandExt,133 cpgIslandExt,162 cpgIslandExt,242 cpgIslandExt,246 cpgIslandExt,258 cpgIslandExt,309 cpgIslandExt,500 cpgIslandExt,556 cpgIslandExtUnmasked,136 cpgIslandExtUnmasked,165 cpgIslandExtUnmasked,245 cpgIslandExtUnmasked,249 cpgIslandExtUnmasked,261 cpgIslandExtUnmasked,312 cpgIslandExtUnmasked,503 cpgIslandExtUnmasked,559 cpgIslandSuper,133 cpgIslandSuper,162 cpgIslandSuper,242 cpgIslandSuper,246 cpgIslandSuper,258 cpgIslandSuper,309 cpgIslandSuper,500 cpgIslandSuper,556 cytoBandIdeo,5 ensGene,17 ensGene,30 ensGene,72 ensGene,79 ensGene,98 ensGene,152 ensGene,157 ensemblGeneScaffold,76 ensemblGeneScaffold,102 gc5BaseBw,64 genscan,49 genscan,71 genscan,124 genscan,131 genscan,174 microsat,95 nestedRepeats,35 nestedRepeats,239 nestedRepeats,293 nestedRepeats,299 nestedRepeats,311 nestedRepeats,362 netHg19,254 netHg19,269 netHg19,279 netHg19,286 netHg19,486 netMm10,254 netMm10,269 netMm10,279 netMm10,286 netMm10,486 quality,77 rmsk,25 rmsk,120 rmsk,255 rmsk,300 rmsk,322 rmsk,334 rmsk,385 simpleRepeat,30 simpleRepeat,56 windowmaskerSdust,35 windowmaskerSdust,86 windowmaskerSdust,103 xenoRefGene,19 xenoRefGene,51 xenoRefGene,173 format chainHg19,601 chainMm10,601 chainNetHg19,604 chainNetMm10,604 ensGene,77 ensGene,97 netHg19,601 netMm10,601 formula cpgIslandExt,373 cpgIslandExtUnmasked,376 cpgIslandSuper,373 forth chainHg19,435 chainMm10,435 chainNetHg19,438 chainNetMm10,438 netHg19,435 netMm10,435 found augustusGene,100 ensGene,139 four chainHg19,503 chainMm10,503 chainNetHg19,506 chainNetMm10,506 netHg19,503 netMm10,503 fragment gap,84 gold,132 fragments gold,4 nestedRepeats,3 nestedRepeats,19 nestedRepeats,82 nestedRepeats,101 nestedRepeats,127 nestedRepeats,139 nestedRepeats,191 nestedRepeats,205 nestedRepeats,208 from augustusGene,19 chainHg19,173 chainHg19,298 chainHg19,555 chainHg19,577 chainHg19,758 chainHg19,931 chainHg19,963 chainMm10,173 chainMm10,298 chainMm10,555 chainMm10,577 chainMm10,758 chainMm10,931 chainMm10,963 chainNetHg19,176 chainNetHg19,301 chainNetHg19,558 chainNetHg19,580 chainNetHg19,761 chainNetHg19,934 chainNetHg19,966 chainNetMm10,176 chainNetMm10,301 chainNetMm10,558 chainNetMm10,580 chainNetMm10,761 chainNetMm10,934 chainNetMm10,966 cpgIslandExt,81 cpgIslandExt,496 cpgIslandExt,535 cpgIslandExt,563 cpgIslandExt,574 cpgIslandExtUnmasked,84 cpgIslandExtUnmasked,499 cpgIslandExtUnmasked,538 cpgIslandExtUnmasked,566 cpgIslandExtUnmasked,577 cpgIslandSuper,81 cpgIslandSuper,496 cpgIslandSuper,535 cpgIslandSuper,563 cpgIslandSuper,574 ensGene,106 ensGene,112 ensemblGeneScaffold,68 genscan,15 gold,3 nestedRepeats,24 nestedRepeats,50 nestedRepeats,72 netHg19,173 netHg19,298 netHg19,555 netHg19,577 netHg19,758 netHg19,931 netHg19,963 netMm10,173 netMm10,298 netMm10,555 netMm10,577 netMm10,758 netMm10,931 netMm10,963 rmsk,86 windowmaskerSdust,41 xenoRefGene,25 xenoRefGene,165 xenoRefGene,284 frommer cpgIslandExt,606 cpgIslandExtUnmasked,609 cpgIslandSuper,606 ftp windowmaskerSdust,44 full chainHg19,235 chainHg19,379 chainMm10,235 chainMm10,379 chainNetHg19,238 chainNetHg19,382 chainNetMm10,238 chainNetMm10,382 nestedRepeats,118 netHg19,235 netHg19,379 netMm10,235 netMm10,379 rmsk,140 furthermore augustusGene,64 future rmsk,272 g cpgIslandExt,51 cpgIslandExt,392 cpgIslandExt,597 cpgIslandExtUnmasked,54 cpgIslandExtUnmasked,395 cpgIslandExtUnmasked,600 cpgIslandSuper,51 cpgIslandSuper,392 cpgIslandSuper,597 ensGene,175 ensemblGeneScaffold,114 gc5BaseBw,20 microsat,115 simpleRepeat,75 g-31-125100-114 chainHg19,670 chainMm10,670 chainNetHg19,673 chainNetMm10,673 netHg19,670 netMm10,670 gambiae augustusGene,219 gap chainHg19,76 chainHg19,86 chainHg19,185 chainHg19,472 chainHg19,484 chainHg19,507 chainHg19,525 chainHg19,540 chainHg19,557 chainHg19,694 chainHg19,825 chainMm10,76 chainMm10,86 chainMm10,185 chainMm10,472 chainMm10,484 chainMm10,507 chainMm10,525 chainMm10,540 chainMm10,557 chainMm10,694 chainMm10,825 chainNetHg19,79 chainNetHg19,89 chainNetHg19,188 chainNetHg19,475 chainNetHg19,487 chainNetHg19,510 chainNetHg19,528 chainNetHg19,543 chainNetHg19,560 chainNetHg19,697 chainNetHg19,828 chainNetMm10,79 chainNetMm10,89 chainNetMm10,188 chainNetMm10,475 chainNetMm10,487 chainNetMm10,510 chainNetMm10,528 chainNetMm10,543 chainNetMm10,560 chainNetMm10,697 chainNetMm10,828 gap,1 gap,2 gap,54 gap,61 gap,74 gold,44 netHg19,76 netHg19,86 netHg19,185 netHg19,472 netHg19,484 netHg19,507 netHg19,525 netHg19,540 netHg19,557 netHg19,694 netHg19,825 netMm10,76 netMm10,86 netMm10,185 netMm10,472 netMm10,484 netMm10,507 netMm10,525 netMm10,540 netMm10,557 netMm10,694 netMm10,825 gapless chainHg19,637 chainMm10,637 chainNetHg19,640 chainNetMm10,640 netHg19,637 netMm10,637 gaps chainHg19,82 chainHg19,93 chainHg19,104 chainHg19,138 chainHg19,162 chainHg19,207 chainHg19,218 chainHg19,399 chainHg19,421 chainHg19,448 chainHg19,880 chainHg19,886 chainMm10,82 chainMm10,93 chainMm10,104 chainMm10,138 chainMm10,162 chainMm10,207 chainMm10,218 chainMm10,399 chainMm10,421 chainMm10,448 chainMm10,880 chainMm10,886 chainNetHg19,85 chainNetHg19,96 chainNetHg19,107 chainNetHg19,141 chainNetHg19,165 chainNetHg19,210 chainNetHg19,221 chainNetHg19,402 chainNetHg19,424 chainNetHg19,451 chainNetHg19,883 chainNetHg19,889 chainNetMm10,85 chainNetMm10,96 chainNetMm10,107 chainNetMm10,141 chainNetMm10,165 chainNetMm10,210 chainNetMm10,221 chainNetMm10,402 chainNetMm10,424 chainNetMm10,451 chainNetMm10,883 chainNetMm10,889 gap,11 gap,16 gap,23 gap,31 gap,83 gap,85 gold,85 netHg19,82 netHg19,93 netHg19,104 netHg19,138 netHg19,162 netHg19,207 netHg19,218 netHg19,399 netHg19,421 netHg19,448 netHg19,880 netHg19,886 netMm10,82 netMm10,93 netMm10,104 netMm10,138 netMm10,162 netMm10,207 netMm10,218 netMm10,399 netMm10,421 netMm10,448 netMm10,880 netMm10,886 gardiner-garden cpgIslandExt,376 cpgIslandExt,604 cpgIslandExtUnmasked,379 cpgIslandExtUnmasked,607 cpgIslandSuper,376 cpgIslandSuper,604 gary microsat,111 simpleRepeat,71 gc cpgIslandExt,262 cpgIslandExtUnmasked,265 cpgIslandSuper,262 gc5BaseBw,1 gc5BaseBw,3 gc5BaseBw,13 gc5BaseBw,30 gene augustusGene,5 augustusGene,10 augustusGene,40 augustusGene,112 augustusGene,157 augustusGene,163 augustusGene,305 augustusGene,320 cpgIslandExt,145 cpgIslandExtUnmasked,148 cpgIslandSuper,145 ensGene,7 ensGene,11 ensGene,23 ensGene,39 ensGene,58 ensGene,155 ensemblGeneScaffold,4 ensemblGeneScaffold,18 ensemblGeneScaffold,41 ensemblGeneScaffold,57 ensemblGeneScaffold,85 genscan,4 genscan,8 genscan,55 genscan,72 genscan,111 genscan,117 genscan,214 xenoRefGene,8 xenoRefGene,52 xenoRefGene,106 xenoRefGene,121 xenoRefGene,126 xenoRefGene,154 xenoRefGene,183 gene-rich gc5BaseBw,36 genepred ensGene,76 generally rmsk,72 generate nestedRepeats,261 nestedRepeats,320 rmsk,343 generated cpgIslandExt,588 cpgIslandExtUnmasked,591 cpgIslandSuper,588 ensGene,14 ensemblGeneScaffold,60 nestedRepeats,282 rmsk,289 xenoRefGene,288 generating augustusGene,189 genes augustusGene,8 augustusGene,44 cpgIslandExt,20 cpgIslandExt,23 cpgIslandExtUnmasked,23 cpgIslandExtUnmasked,26 cpgIslandSuper,20 cpgIslandSuper,23 ensGene,2 ensGene,4 ensGene,5 ensGene,27 ensGene,92 genscan,2 genscan,6 genscan,59 simpleRepeat,41 xenoRefGene,5 xenoRefGene,6 xenoRefGene,18 xenoRefGene,192 xenoRefGene,200 xenoRefGene,211 genet nestedRepeats,354 nestedRepeats,386 nestedRepeats,408 rmsk,377 rmsk,409 rmsk,431 genetic nestedRepeats,52 rmsk,88 genome augustusGene,31 chainHg19,19 chainHg19,73 chainHg19,202 chainHg19,275 chainHg19,288 chainHg19,779 chainHg19,1100 chainMm10,19 chainMm10,73 chainMm10,202 chainMm10,275 chainMm10,288 chainMm10,779 chainMm10,1100 chainNetHg19,22 chainNetHg19,76 chainNetHg19,205 chainNetHg19,278 chainNetHg19,291 chainNetHg19,782 chainNetHg19,1103 chainNetMm10,22 chainNetMm10,76 chainNetMm10,205 chainNetMm10,278 chainNetMm10,291 chainNetMm10,782 chainNetMm10,1103 cpgIslandExt,164 cpgIslandExt,302 cpgIslandExtUnmasked,167 cpgIslandExtUnmasked,305 cpgIslandSuper,164 cpgIslandSuper,302 ensGene,164 ensGene,192 ensemblGeneScaffold,131 gold,18 gold,138 nestedRepeats,405 netHg19,19 netHg19,73 netHg19,202 netHg19,275 netHg19,288 netHg19,779 netHg19,1100 netMm10,19 netMm10,73 netMm10,202 netMm10,275 netMm10,288 netMm10,779 netMm10,1100 rmsk,428 xenoRefGene,223 xenoRefGene,306 genomes chainHg19,25 chainHg19,582 chainHg19,1062 chainMm10,25 chainMm10,582 chainMm10,1062 chainNetHg19,28 chainNetHg19,585 chainNetHg19,1065 chainNetMm10,28 chainNetMm10,585 chainNetMm10,1065 cpgIslandExt,612 cpgIslandExtUnmasked,615 cpgIslandSuper,612 nestedRepeats,369 nestedRepeats,383 netHg19,25 netHg19,582 netHg19,1062 netMm10,25 netMm10,582 netMm10,1062 rmsk,392 rmsk,406 windowmaskerSdust,105 xenoRefGene,375 genomic chainHg19,491 chainHg19,1014 chainHg19,1030 chainMm10,491 chainMm10,1014 chainMm10,1030 chainNetHg19,494 chainNetHg19,1017 chainNetHg19,1033 chainNetMm10,494 chainNetMm10,1017 chainNetMm10,1033 genscan,92 genscan,218 netHg19,491 netHg19,1014 netHg19,1030 netMm10,491 netMm10,1014 netMm10,1030 windowmaskerSdust,3 xenoRefGene,162 xenoRefGene,273 genomics chainHg19,11 chainMm10,11 chainNetHg19,14 chainNetHg19Viewchain,12 chainNetHg19Viewnet,12 chainNetMm10,14 chainNetMm10Viewchain,12 chainNetMm10Viewnet,12 netHg19,11 netMm10,11 genscan genscan,1 genscan,3 genscan,17 genscan,136 genscan,177 gertz windowmaskerSdust,92 giri nestedRepeats,56 nestedRepeats,310 rmsk,92 rmsk,333 go genscan,113 xenoRefGene,179 gold gold,80 gold,94 gr xenoRefGene,320 graph gc5BaseBw,59 gc5BaseBw,78 quality,73 graphical chainHg19,438 chainMm10,438 chainNetHg19,441 chainNetMm10,441 gold,119 netHg19,438 netMm10,438 quality,100 rmsk,211 gray ensemblGeneScaffold,34 ensemblGeneScaffold,35 grch37 chainHg19,6 chainHg19,68 chainHg19,302 chainNetHg19,7 chainNetHg19,71 chainNetHg19,305 chainNetHg19Viewchain,5 chainNetHg19Viewnet,5 netHg19,6 netHg19,68 netHg19,302 grcm38 chainMm10,6 chainMm10,68 chainMm10,302 chainNetMm10,7 chainNetMm10,71 chainNetMm10,305 chainNetMm10Viewchain,5 chainNetMm10Viewnet,5 netMm10,6 netMm10,68 netMm10,302 greater cpgIslandExt,267 cpgIslandExt,269 cpgIslandExt,274 cpgIslandExtUnmasked,270 cpgIslandExtUnmasked,272 cpgIslandExtUnmasked,277 cpgIslandSuper,267 cpgIslandSuper,269 cpgIslandSuper,274 green cpgIslandExt,10 cpgIslandExtUnmasked,13 cpgIslandSuper,10 nestedRepeats,328 rmsk,351 group augustusGene,198 augustusGene,235 chainHg19,629 chainMm10,629 chainNetHg19,632 chainNetMm10,632 netHg19,629 netMm10,629 grouped gold,31 groups augustusGene,194 gs cpgIslandExt,294 cpgIslandExtUnmasked,297 cpgIslandSuper,294 gt cpgIslandExt,422 cpgIslandExt,488 cpgIslandExtUnmasked,425 cpgIslandExtUnmasked,491 cpgIslandSuper,422 cpgIslandSuper,488 gtf ensGene,96 guanine cpgIslandExt,52 cpgIslandExtUnmasked,55 cpgIslandSuper,52 gc5BaseBw,21 hard cpgIslandExt,416 cpgIslandExtUnmasked,419 cpgIslandSuper,416 hardison chainHg19,933 chainHg19,1090 chainMm10,933 chainMm10,1090 chainNetHg19,936 chainNetHg19,1093 chainNetMm10,936 chainNetMm10,1093 netHg19,933 netHg19,1090 netMm10,933 netMm10,1090 harris chainHg19,1007 chainMm10,1007 chainNetHg19,1010 chainNetMm10,1010 netHg19,1007 netMm10,1007 hart xenoRefGene,331 has nestedRepeats,246 xenoRefGene,66 haussler augustusGene,292 chainHg19,968 chainHg19,1048 chainHg19,1092 chainMm10,968 chainMm10,1048 chainMm10,1092 chainNetHg19,971 chainNetHg19,1051 chainNetHg19,1095 chainNetMm10,971 chainNetMm10,1051 chainNetMm10,1095 netHg19,968 netHg19,1048 netHg19,1092 netMm10,968 netMm10,1048 netMm10,1092 have chainHg19,567 chainMm10,567 chainNetHg19,570 chainNetMm10,570 nestedRepeats,88 netHg19,567 netMm10,567 rmsk,69 rmsk,108 having cpgIslandExt,138 cpgIslandExtUnmasked,141 cpgIslandSuper,138 xenoRefGene,246 xenoRefGene,255 height quality,27 heights quality,48 help cpgIslandExt,546 cpgIslandExtUnmasked,549 cpgIslandSuper,546 ensGene,126 gc5BaseBw,61 quality,75 helps cpgIslandExt,74 cpgIslandExtUnmasked,77 cpgIslandSuper,74 here rmsk,127 heterochromatic gap,22 hg19 chainHg19,7 chainHg19,69 chainHg19,303 chainNetHg19,8 chainNetHg19,72 chainNetHg19,306 chainNetHg19Viewchain,6 chainNetHg19Viewnet,6 netHg19,7 netHg19,69 netHg19,303 hgdownload.soe.ucsc.edu cpgIslandExt,576 cpgIslandExtUnmasked,579 cpgIslandSuper,576 hiatt xenoRefGene,321 hidden augustusGene,324 hide xenoRefGene,190 hierarchy chainHg19,816 chainMm10,816 chainNetHg19,819 chainNetMm10,819 netHg19,816 netMm10,816 high gc5BaseBw,29 higher chainHg19,848 chainMm10,848 chainNetHg19,851 chainNetMm10,851 cpgIslandExt,157 cpgIslandExtUnmasked,160 cpgIslandSuper,157 netHg19,848 netMm10,848 rmsk,230 higher-level chainHg19,865 chainMm10,865 chainNetHg19,868 chainNetMm10,868 netHg19,865 netMm10,865 higher-scoring chainHg19,809 chainHg19,828 chainMm10,809 chainMm10,828 chainNetHg19,812 chainNetHg19,831 chainNetMm10,812 chainNetMm10,831 netHg19,809 netHg19,828 netMm10,809 netMm10,828 highest xenoRefGene,248 highest-scoring chainHg19,390 chainHg19,775 chainMm10,390 chainMm10,775 chainNetHg19,393 chainNetHg19,778 chainNetMm10,393 chainNetMm10,778 netHg19,390 netHg19,775 netMm10,390 netMm10,775 highlight gc5BaseBw,49 quality,64 highly microsat,40 hillier cpgIslandExt,601 cpgIslandExtUnmasked,604 cpgIslandSuper,601 hinrichs chainHg19,1044 chainMm10,1044 chainNetHg19,1047 chainNetMm10,1047 netHg19,1044 netMm10,1044 hiram gc5BaseBw,82 quality,106 his chainHg19,942 chainMm10,942 chainNetHg19,945 chainNetMm10,945 netHg19,942 netMm10,942 honeybee1 augustusGene,217 horizontal nestedRepeats,130 nestedRepeats,150 hou chainHg19,921 chainMm10,921 chainNetHg19,924 chainNetMm10,924 netHg19,921 netMm10,921 housekeeping cpgIslandExt,22 cpgIslandExtUnmasked,25 cpgIslandSuper,22 how chainHg19,876 chainHg19,893 chainMm10,876 chainMm10,893 chainNetHg19,879 chainNetHg19,896 chainNetMm10,879 chainNetMm10,896 netHg19,876 netHg19,893 netMm10,876 netMm10,893 rmsk,121 however cpgIslandExt,96 cpgIslandExtUnmasked,99 cpgIslandSuper,96 http cpgIslandExt,575 cpgIslandExtUnmasked,578 cpgIslandSuper,575 nestedRepeats,332 rmsk,355 hubbard ensGene,44 ensGene,168 ensemblGeneScaffold,89 ensemblGeneScaffold,107 hubley nestedRepeats,308 nestedRepeats,326 rmsk,331 rmsk,349 human augustusGene,205 augustusGene,210 augustusGene,276 chainHg19,1 chainHg19,3 chainHg19,65 chainHg19,96 chainHg19,148 chainHg19,266 chainHg19,291 chainHg19,572 chainHg19,620 chainHg19,1061 chainMm10,1061 chainNetHg19,1 chainNetHg19,4 chainNetHg19,68 chainNetHg19,99 chainNetHg19,151 chainNetHg19,269 chainNetHg19,294 chainNetHg19,575 chainNetHg19,623 chainNetHg19,1064 chainNetHg19Viewchain,2 chainNetHg19Viewnet,2 chainNetMm10,1064 genscan,217 nestedRepeats,404 netHg19,1 netHg19,3 netHg19,65 netHg19,96 netHg19,148 netHg19,266 netHg19,291 netHg19,572 netHg19,620 netHg19,1061 netMm10,1061 rmsk,427 human-mouse chainHg19,1096 chainMm10,1096 chainNetHg19,1099 chainNetMm10,1099 netHg19,1096 netMm10,1096 id nestedRepeats,10 nestedRepeats,106 identified chainHg19,937 chainMm10,937 chainNetHg19,940 chainNetMm10,940 netHg19,937 netMm10,937 xenoRefGene,252 identifying cpgIslandExt,249 cpgIslandExtUnmasked,252 cpgIslandSuper,249 identity microsat,71 nestedRepeats,187 nestedRepeats,222 xenoRefGene,250 xenoRefGene,258 xenoRefGene,270 ideogram cytoBandIdeo,3 cytoBandIdeo,4 if gap,40 nestedRepeats,137 xenoRefGene,203 ii215-25 augustusGene,338 immediately cpgIslandExt,48 cpgIslandExtUnmasked,51 cpgIslandSuper,48 imperfect simpleRepeat,19 improve augustusGene,302 improved chainHg19,1010 chainMm10,1010 chainNetHg19,1013 chainNetMm10,1013 netHg19,1010 netMm10,1010 in augustusGene,101 chainHg19,31 chainHg19,94 chainHg19,114 chainHg19,146 chainHg19,153 chainHg19,167 chainHg19,186 chainHg19,189 chainHg19,228 chainHg19,249 chainHg19,294 chainHg19,327 chainHg19,357 chainHg19,369 chainHg19,378 chainHg19,396 chainHg19,401 chainHg19,410 chainHg19,422 chainHg19,436 chainHg19,478 chainHg19,495 chainHg19,526 chainHg19,544 chainHg19,558 chainHg19,593 chainHg19,689 chainHg19,777 chainHg19,818 chainHg19,826 chainHg19,842 chainHg19,875 chainHg19,887 chainHg19,1057 chainMm10,31 chainMm10,94 chainMm10,114 chainMm10,146 chainMm10,153 chainMm10,167 chainMm10,186 chainMm10,189 chainMm10,228 chainMm10,249 chainMm10,294 chainMm10,327 chainMm10,357 chainMm10,369 chainMm10,378 chainMm10,396 chainMm10,401 chainMm10,410 chainMm10,422 chainMm10,436 chainMm10,478 chainMm10,495 chainMm10,526 chainMm10,544 chainMm10,558 chainMm10,593 chainMm10,689 chainMm10,777 chainMm10,818 chainMm10,826 chainMm10,842 chainMm10,875 chainMm10,887 chainMm10,1057 chainNetHg19,34 chainNetHg19,97 chainNetHg19,117 chainNetHg19,149 chainNetHg19,156 chainNetHg19,170 chainNetHg19,189 chainNetHg19,192 chainNetHg19,231 chainNetHg19,252 chainNetHg19,297 chainNetHg19,330 chainNetHg19,360 chainNetHg19,372 chainNetHg19,381 chainNetHg19,399 chainNetHg19,404 chainNetHg19,413 chainNetHg19,425 chainNetHg19,439 chainNetHg19,481 chainNetHg19,498 chainNetHg19,529 chainNetHg19,547 chainNetHg19,561 chainNetHg19,596 chainNetHg19,692 chainNetHg19,780 chainNetHg19,821 chainNetHg19,829 chainNetHg19,845 chainNetHg19,878 chainNetHg19,890 chainNetHg19,1060 chainNetMm10,34 chainNetMm10,97 chainNetMm10,117 chainNetMm10,149 chainNetMm10,156 chainNetMm10,170 chainNetMm10,189 chainNetMm10,192 chainNetMm10,231 chainNetMm10,252 chainNetMm10,297 chainNetMm10,330 chainNetMm10,360 chainNetMm10,372 chainNetMm10,381 chainNetMm10,399 chainNetMm10,404 chainNetMm10,413 chainNetMm10,425 chainNetMm10,439 chainNetMm10,481 chainNetMm10,498 chainNetMm10,529 chainNetMm10,547 chainNetMm10,561 chainNetMm10,596 chainNetMm10,692 chainNetMm10,780 chainNetMm10,821 chainNetMm10,829 chainNetMm10,845 chainNetMm10,878 chainNetMm10,890 chainNetMm10,1060 cpgIslandExt,24 cpgIslandExt,58 cpgIslandExt,64 cpgIslandExt,87 cpgIslandExt,180 cpgIslandExt,189 cpgIslandExt,214 cpgIslandExt,297 cpgIslandExt,341 cpgIslandExt,375 cpgIslandExt,610 cpgIslandExtUnmasked,27 cpgIslandExtUnmasked,61 cpgIslandExtUnmasked,67 cpgIslandExtUnmasked,90 cpgIslandExtUnmasked,183 cpgIslandExtUnmasked,192 cpgIslandExtUnmasked,217 cpgIslandExtUnmasked,300 cpgIslandExtUnmasked,344 cpgIslandExtUnmasked,378 cpgIslandExtUnmasked,613 cpgIslandSuper,24 cpgIslandSuper,58 cpgIslandSuper,64 cpgIslandSuper,87 cpgIslandSuper,180 cpgIslandSuper,189 cpgIslandSuper,214 cpgIslandSuper,297 cpgIslandSuper,341 cpgIslandSuper,375 cpgIslandSuper,610 ensGene,37 ensGene,50 ensGene,83 ensGene,90 ensGene,95 ensemblGeneScaffold,31 ensemblGeneScaffold,47 ensemblGeneScaffold,83 ensemblGeneScaffold,93 gap,12 gap,37 gap,93 gc5BaseBw,5 gc5BaseBw,26 gc5BaseBw,43 genscan,101 genscan,150 genscan,162 genscan,165 genscan,184 genscan,188 genscan,198 genscan,216 gold,57 gold,117 microsat,42 microsat,49 nestedRepeats,61 nestedRepeats,64 nestedRepeats,75 nestedRepeats,115 nestedRepeats,156 nestedRepeats,167 nestedRepeats,241 nestedRepeats,339 nestedRepeats,367 nestedRepeats,381 nestedRepeats,402 netHg19,31 netHg19,94 netHg19,114 netHg19,146 netHg19,153 netHg19,167 netHg19,186 netHg19,189 netHg19,228 netHg19,249 netHg19,294 netHg19,327 netHg19,357 netHg19,369 netHg19,378 netHg19,396 netHg19,401 netHg19,410 netHg19,422 netHg19,436 netHg19,478 netHg19,495 netHg19,526 netHg19,544 netHg19,558 netHg19,593 netHg19,689 netHg19,777 netHg19,818 netHg19,826 netHg19,842 netHg19,875 netHg19,887 netHg19,1057 netMm10,31 netMm10,94 netMm10,114 netMm10,146 netMm10,153 netMm10,167 netMm10,186 netMm10,189 netMm10,228 netMm10,249 netMm10,294 netMm10,327 netMm10,357 netMm10,369 netMm10,378 netMm10,396 netMm10,401 netMm10,410 netMm10,422 netMm10,436 netMm10,478 netMm10,495 netMm10,526 netMm10,544 netMm10,558 netMm10,593 netMm10,689 netMm10,777 netMm10,818 netMm10,826 netMm10,842 netMm10,875 netMm10,887 netMm10,1057 quality,23 quality,58 rmsk,45 rmsk,63 rmsk,97 rmsk,100 rmsk,128 rmsk,139 rmsk,209 rmsk,270 rmsk,317 rmsk,362 rmsk,390 rmsk,404 rmsk,425 windowmaskerSdust,27 xenoRefGene,241 include rmsk,159 rmsk,172 included augustusGene,160 cpgIslandExt,306 cpgIslandExtUnmasked,309 cpgIslandSuper,306 windowmaskerSdust,26 includes rmsk,198 including rmsk,188 indels microsat,74 indicate chainHg19,137 chainHg19,243 chainMm10,137 chainMm10,243 chainNetHg19,140 chainNetHg19,246 chainNetMm10,140 chainNetMm10,246 ensemblGeneScaffold,37 nestedRepeats,153 netHg19,137 netHg19,243 netMm10,137 netMm10,243 indicates quality,34 xenoRefGene,58 individual chainHg19,240 chainHg19,493 chainMm10,240 chainMm10,493 chainNetHg19,243 chainNetHg19,496 chainNetMm10,243 chainNetMm10,496 netHg19,240 netHg19,493 netMm10,240 netMm10,493 information augustusGene,36 chainHg19,456 chainHg19,469 chainHg19,475 chainHg19,843 chainMm10,456 chainMm10,469 chainMm10,475 chainMm10,843 chainNetHg19,459 chainNetHg19,472 chainNetHg19,478 chainNetHg19,846 chainNetMm10,459 chainNetMm10,472 chainNetMm10,478 chainNetMm10,846 cpgIslandExt,542 cpgIslandExtUnmasked,545 cpgIslandSuper,542 ensGene,19 ensGene,159 gc5BaseBw,55 genscan,51 genscan,126 microsat,97 nestedRepeats,53 nestedRepeats,301 netHg19,456 netHg19,469 netHg19,475 netHg19,843 netMm10,456 netMm10,469 netMm10,475 netMm10,843 quality,70 rmsk,89 rmsk,324 simpleRepeat,58 xenoRefGene,175 initiate rmsk,316 initio augustusGene,4 augustusGene,17 input windowmaskerSdust,61 windowmaskerSdust,70 inserted chainHg19,569 chainHg19,899 chainMm10,569 chainMm10,899 chainNetHg19,572 chainNetHg19,902 chainNetMm10,572 chainNetMm10,902 netHg19,569 netHg19,899 netMm10,569 netMm10,899 insertion chainHg19,152 chainMm10,152 chainNetHg19,155 chainNetMm10,155 netHg19,152 netMm10,152 rmsk,223 insertions nestedRepeats,86 nestedRepeats,92 instead xenoRefGene,118 institute nestedRepeats,55 rmsk,91 instructions ensGene,117 integrator cpgIslandExt,526 cpgIslandExtUnmasked,529 cpgIslandSuper,526 ensGene,71 interactively cpgIslandExt,515 cpgIslandExtUnmasked,518 cpgIslandSuper,515 ensGene,63 intergenic genscan,47 internet nestedRepeats,279 interrupted nestedRepeats,1 nestedRepeats,5 nestedRepeats,21 nestedRepeats,90 nestedRepeats,121 interspersed nestedRepeats,36 nestedRepeats,373 nestedRepeats,400 rmsk,26 rmsk,154 rmsk,162 rmsk,396 rmsk,423 intervals windowmaskerSdust,4 into chainHg19,599 chainHg19,611 chainHg19,627 chainHg19,802 chainMm10,599 chainMm10,611 chainMm10,627 chainMm10,802 chainNetHg19,602 chainNetHg19,614 chainNetHg19,630 chainNetHg19,805 chainNetMm10,602 chainNetMm10,614 chainNetMm10,630 chainNetMm10,805 cpgIslandExt,105 cpgIslandExtUnmasked,108 cpgIslandSuper,105 gold,24 gold,32 netHg19,599 netHg19,611 netHg19,627 netHg19,802 netMm10,599 netMm10,611 netMm10,627 netMm10,802 windowmaskerSdust,80 intractable gap,21 intron augustusGene,88 augustusGene,330 introns chainHg19,56 chainMm10,56 chainNetHg19,59 chainNetMm10,59 genscan,45 netHg19,56 netMm10,56 inv chainHg19,531 chainMm10,531 chainNetHg19,534 chainNetMm10,534 netHg19,531 netMm10,531 inversions chainHg19,110 chainHg19,174 chainMm10,110 chainMm10,174 chainNetHg19,113 chainNetHg19,177 chainNetMm10,113 chainNetMm10,177 netHg19,110 netHg19,174 netMm10,110 netMm10,174 inverted chainHg19,861 chainMm10,861 chainNetHg19,864 chainNetMm10,864 netHg19,861 netMm10,861 involve chainHg19,164 chainMm10,164 chainNetHg19,167 chainNetMm10,167 netHg19,164 netMm10,164 is chainHg19,277 chainHg19,297 chainHg19,476 chainMm10,277 chainMm10,297 chainMm10,476 chainNetHg19,280 chainNetHg19,300 chainNetHg19,479 chainNetMm10,280 chainNetMm10,300 chainNetMm10,479 cpgIslandExt,56 cpgIslandExt,113 cpgIslandExt,121 cpgIslandExt,130 cpgIslandExt,160 cpgIslandExt,203 cpgIslandExt,321 cpgIslandExt,330 cpgIslandExt,335 cpgIslandExt,347 cpgIslandExt,368 cpgIslandExt,404 cpgIslandExt,494 cpgIslandExtUnmasked,59 cpgIslandExtUnmasked,116 cpgIslandExtUnmasked,124 cpgIslandExtUnmasked,133 cpgIslandExtUnmasked,163 cpgIslandExtUnmasked,206 cpgIslandExtUnmasked,324 cpgIslandExtUnmasked,333 cpgIslandExtUnmasked,338 cpgIslandExtUnmasked,350 cpgIslandExtUnmasked,371 cpgIslandExtUnmasked,407 cpgIslandExtUnmasked,497 cpgIslandSuper,56 cpgIslandSuper,113 cpgIslandSuper,121 cpgIslandSuper,130 cpgIslandSuper,160 cpgIslandSuper,203 cpgIslandSuper,321 cpgIslandSuper,330 cpgIslandSuper,335 cpgIslandSuper,347 cpgIslandSuper,368 cpgIslandSuper,404 cpgIslandSuper,494 ensemblGeneScaffold,66 gap,58 gap,66 gap,98 gc5BaseBw,32 gold,109 gold,115 microsat,88 nestedRepeats,59 nestedRepeats,123 nestedRepeats,198 nestedRepeats,219 nestedRepeats,337 netHg19,277 netHg19,297 netHg19,476 netMm10,277 netMm10,297 netMm10,476 rmsk,95 rmsk,360 simpleRepeat,28 windowmaskerSdust,25 windowmaskerSdust,39 island cpgIslandExt,343 cpgIslandExtUnmasked,346 cpgIslandSuper,343 islands cpgIslandExt,2 cpgIslandExt,4 cpgIslandExt,5 cpgIslandExt,16 cpgIslandExt,27 cpgIslandExt,148 cpgIslandExt,177 cpgIslandExt,226 cpgIslandExt,320 cpgIslandExt,507 cpgIslandExt,609 cpgIslandExtUnmasked,4 cpgIslandExtUnmasked,8 cpgIslandExtUnmasked,19 cpgIslandExtUnmasked,30 cpgIslandExtUnmasked,151 cpgIslandExtUnmasked,180 cpgIslandExtUnmasked,229 cpgIslandExtUnmasked,323 cpgIslandExtUnmasked,510 cpgIslandExtUnmasked,612 cpgIslandSuper,2 cpgIslandSuper,4 cpgIslandSuper,5 cpgIslandSuper,16 cpgIslandSuper,27 cpgIslandSuper,148 cpgIslandSuper,177 cpgIslandSuper,226 cpgIslandSuper,320 cpgIslandSuper,507 cpgIslandSuper,609 issue xenoRefGene,353 xenoRefGene,387 it chainHg19,89 chainHg19,276 chainHg19,530 chainHg19,542 chainMm10,89 chainMm10,276 chainMm10,530 chainMm10,542 chainNetHg19,92 chainNetHg19,279 chainNetHg19,533 chainNetHg19,545 chainNetMm10,92 chainNetMm10,279 chainNetMm10,533 chainNetMm10,545 gap,57 genscan,143 netHg19,89 netHg19,276 netHg19,530 netHg19,542 netMm10,89 netMm10,276 netMm10,530 netMm10,542 item nestedRepeats,197 xenoRefGene,75 items chainHg19,494 chainMm10,494 chainNetHg19,497 chainNetMm10,497 ensemblGeneScaffold,28 ensemblGeneScaffold,36 nestedRepeats,171 nestedRepeats,180 netHg19,494 netMm10,494 xenoRefGene,102 its cpgIslandExt,509 cpgIslandExtUnmasked,512 cpgIslandSuper,509 nestedRepeats,204 j cpgIslandExt,613 cpgIslandExtUnmasked,616 cpgIslandSuper,613 ensGene,183 ensemblGeneScaffold,122 genscan,220 nestedRepeats,341 rmsk,364 xenoRefGene,332 jan chainHg19,1103 chainMm10,1103 chainNetHg19,1106 chainNetMm10,1106 ensGene,199 ensemblGeneScaffold,138 microsat,129 netHg19,1103 netMm10,1103 simpleRepeat,89 windowmaskerSdust,108 xenoRefGene,350 xenoRefGene,383 jim chainHg19,959 chainHg19,986 chainHg19,1004 chainMm10,959 chainMm10,986 chainMm10,1004 chainNetHg19,962 chainNetHg19,989 chainNetHg19,1007 chainNetMm10,962 chainNetMm10,989 chainNetMm10,1007 netHg19,959 netHg19,986 netHg19,1004 netMm10,959 netMm10,986 netMm10,1004 joined chainHg19,122 chainMm10,122 chainNetHg19,125 chainNetMm10,125 nestedRepeats,7 nestedRepeats,18 nestedRepeats,103 nestedRepeats,128 netHg19,122 netMm10,122 journal nestedRepeats,349 rmsk,372 jul cpgIslandExt,617 cpgIslandExtUnmasked,620 cpgIslandSuper,617 jurka nestedRepeats,62 nestedRepeats,340 rmsk,98 rmsk,363 k augustusGene,268 k1 cpgIslandExt,484 cpgIslandExtUnmasked,487 cpgIslandSuper,484 k2 cpgIslandExt,486 cpgIslandExtUnmasked,489 cpgIslandSuper,486 karlin genscan,148 genscan,209 kasif genscan,193 kd xenoRefGene,318 xenoRefGene,360 kd-tree chainHg19,633 chainMm10,633 chainNetHg19,636 chainNetMm10,636 netHg19,633 netMm10,633 kd-trees chainHg19,651 chainMm10,651 chainNetHg19,654 chainNetMm10,654 netHg19,651 netMm10,651 keep cpgIslandExt,125 cpgIslandExtUnmasked,128 cpgIslandSuper,125 kent chainHg19,960 chainHg19,987 chainHg19,1005 chainHg19,1040 chainHg19,1082 chainMm10,960 chainMm10,987 chainMm10,1005 chainMm10,1040 chainMm10,1082 chainNetHg19,963 chainNetHg19,990 chainNetHg19,1008 chainNetHg19,1043 chainNetHg19,1085 chainNetMm10,963 chainNetMm10,990 chainNetMm10,1008 chainNetMm10,1043 chainNetMm10,1085 netHg19,960 netHg19,987 netHg19,1005 netHg19,1040 netHg19,1082 netMm10,960 netMm10,987 netMm10,1005 netMm10,1040 netMm10,1082 xenoRefGene,300 kept xenoRefGene,276 km xenoRefGene,336 known chainHg19,910 chainMm10,910 chainNetHg19,913 chainNetMm10,913 gap,56 gold,35 gold,111 netHg19,910 netMm10,910 xenoRefGene,14 l cpgIslandExt,600 cpgIslandExtUnmasked,603 cpgIslandSuper,600 ensGene,179 ensemblGeneScaffold,118 lab augustusGene,252 label genscan,98 xenoRefGene,99 xenoRefGene,111 xenoRefGene,134 labeled nestedRepeats,132 xenoRefGene,104 labels nestedRepeats,161 xenoRefGene,76 landrum xenoRefGene,333 large quality,45 largely chainHg19,141 chainMm10,141 chainNetHg19,144 chainNetMm10,144 netHg19,141 netMm10,141 largest chainHg19,389 chainMm10,389 chainNetHg19,392 chainNetMm10,392 netHg19,389 netMm10,389 lastz chainHg19,586 chainHg19,759 chainHg19,908 chainMm10,586 chainMm10,759 chainMm10,908 chainNetHg19,589 chainNetHg19,762 chainNetHg19,911 chainNetMm10,589 chainNetMm10,762 chainNetMm10,911 netHg19,586 netHg19,759 netHg19,908 netMm10,586 netMm10,759 netMm10,908 lavtoaxt chainHg19,604 chainMm10,604 chainNetHg19,607 chainNetMm10,607 netHg19,604 netMm10,604 least microsat,29 microsat,78 xenoRefGene,267 length augustusGene,82 cpgIslandExt,268 cpgIslandExt,360 cpgIslandExt,395 cpgIslandExtUnmasked,271 cpgIslandExtUnmasked,363 cpgIslandExtUnmasked,398 cpgIslandSuper,268 cpgIslandSuper,360 cpgIslandSuper,395 genscan,39 less xenoRefGene,231 level chainHg19,384 chainHg19,418 chainHg19,423 chainHg19,430 chainHg19,488 chainHg19,515 chainHg19,528 chainHg19,560 chainMm10,384 chainMm10,418 chainMm10,423 chainMm10,430 chainMm10,488 chainMm10,515 chainMm10,528 chainMm10,560 chainNetHg19,387 chainNetHg19,421 chainNetHg19,426 chainNetHg19,433 chainNetHg19,491 chainNetHg19,518 chainNetHg19,531 chainNetHg19,563 chainNetMm10,387 chainNetMm10,421 chainNetMm10,426 chainNetMm10,433 chainNetMm10,491 chainNetMm10,518 chainNetMm10,531 chainNetMm10,563 netHg19,384 netHg19,418 netHg19,423 netHg19,430 netHg19,488 netHg19,515 netHg19,528 netHg19,560 netMm10,384 netMm10,418 netMm10,423 netMm10,430 netMm10,488 netMm10,515 netMm10,528 netMm10,560 rmsk,205 xenoRefGene,60 xenoRefGene,259 levels cpgIslandExt,158 cpgIslandExtUnmasked,161 cpgIslandSuper,158 libraries nestedRepeats,258 nestedRepeats,317 rmsk,340 library nestedRepeats,47 rmsk,83 light cpgIslandExt,9 cpgIslandExtUnmasked,12 cpgIslandSuper,9 xenoRefGene,69 lighter rmsk,237 like chainHg19,47 chainHg19,55 chainMm10,47 chainMm10,55 chainNetHg19,50 chainNetHg19,58 chainNetMm10,50 chainNetMm10,58 ensGene,148 netHg19,47 netHg19,55 netMm10,47 netMm10,55 likely augustusGene,111 microsat,17 line chainHg19,466 chainMm10,466 chainNetHg19,469 chainNetMm10,469 gap,65 gold,114 nestedRepeats,151 netHg19,466 netMm10,466 rmsk,165 line-up chainHg19,533 chainMm10,533 chainNetHg19,536 chainNetMm10,536 netHg19,533 netMm10,533 line-ups chainHg19,518 chainMm10,518 chainNetHg19,521 chainNetMm10,521 netHg19,518 netMm10,518 lineage-specific chainHg19,934 chainMm10,934 chainNetHg19,937 chainNetMm10,937 netHg19,934 netMm10,934 linear chainHg19,693 chainMm10,693 chainNetHg19,696 chainNetMm10,696 ensemblGeneScaffold,48 netHg19,693 netMm10,693 lineargap chainHg19,699 chainMm10,699 chainNetHg19,702 chainNetMm10,702 netHg19,699 netMm10,699 lines chainHg19,129 chainHg19,136 chainHg19,158 chainHg19,446 chainMm10,129 chainMm10,136 chainMm10,158 chainMm10,446 chainNetHg19,132 chainNetHg19,139 chainNetHg19,161 chainNetHg19,449 chainNetMm10,132 chainNetMm10,139 chainNetMm10,161 chainNetMm10,449 nestedRepeats,131 netHg19,129 netHg19,136 netHg19,158 netHg19,446 netMm10,129 netMm10,136 netMm10,158 netMm10,446 link gc5BaseBw,63 quality,76 linux.x86_64 cpgIslandExt,579 cpgIslandExtUnmasked,582 cpgIslandSuper,579 listed ensGene,49 loaded windowmaskerSdust,79 local chainHg19,109 chainHg19,180 chainMm10,109 chainMm10,180 chainNetHg19,112 chainNetHg19,183 chainNetMm10,112 chainNetMm10,183 ensGene,73 nestedRepeats,98 netHg19,109 netHg19,180 netMm10,109 netMm10,180 located simpleRepeat,21 location chainHg19,248 chainMm10,248 chainNetHg19,251 chainNetMm10,251 netHg19,248 netMm10,248 locations gap,3 long rmsk,161 rmsk,166 longer chainHg19,81 chainMm10,81 chainNetHg19,84 chainNetMm10,84 netHg19,81 netMm10,81 longest chainHg19,511 chainMm10,511 chainNetHg19,514 chainNetMm10,514 netHg19,511 netMm10,511 look chainHg19,46 chainMm10,46 chainNetHg19,49 chainNetMm10,49 netHg19,46 netMm10,46 low nestedRepeats,39 rmsk,29 rmsk,181 lower chainHg19,487 chainMm10,487 chainNetHg19,490 chainNetMm10,490 netHg19,487 netMm10,487 lower-level chainHg19,850 chainHg19,856 chainMm10,850 chainMm10,856 chainNetHg19,853 chainNetHg19,859 chainNetMm10,853 chainNetMm10,859 netHg19,850 netHg19,856 netMm10,850 netMm10,856 ltr rmsk,170 m augustusGene,287 augustusGene,289 augustusGene,317 cpgIslandExt,605 cpgIslandExt,607 cpgIslandExtUnmasked,608 cpgIslandExtUnmasked,610 cpgIslandSuper,605 cpgIslandSuper,607 made rmsk,110 maglott xenoRefGene,363 make gold,66 rmsk,123 makedb rmsk,131 mammalian nestedRepeats,368 nestedRepeats,382 rmsk,391 rmsk,405 xenoRefGene,343 many chainHg19,397 chainMm10,397 chainNetHg19,400 chainNetMm10,400 netHg19,397 netMm10,397 map chainHg19,325 chainMm10,325 chainNetHg19,328 chainNetMm10,328 ensemblGeneScaffold,46 netHg19,325 netMm10,325 mapped augustusGene,298 nestedRepeats,233 mapping cytoBandIdeo,7 ensemblGeneScaffold,7 ensemblGeneScaffold,15 gap,4 gc5BaseBw,8 gold,5 quality,7 mar augustusGene,309 mario augustusGene,102 augustusGene,283 markers microsat,23 markov augustusGene,325 masked cpgIslandExt,192 cpgIslandExt,198 cpgIslandExt,328 cpgIslandExtUnmasked,195 cpgIslandExtUnmasked,201 cpgIslandExtUnmasked,331 cpgIslandSuper,192 cpgIslandSuper,198 cpgIslandSuper,328 rmsk,71 windowmaskerSdust,5 windowmaskerSdust,16 masker windowmaskerSdust,102 masking cpgIslandExt,304 cpgIslandExtUnmasked,307 cpgIslandSuper,304 maskoutfa cpgIslandExt,414 cpgIslandExtUnmasked,417 cpgIslandSuper,414 match chainHg19,253 chainHg19,512 chainHg19,550 chainMm10,253 chainMm10,512 chainMm10,550 chainNetHg19,256 chainNetHg19,515 chainNetHg19,553 chainNetMm10,256 chainNetMm10,515 chainNetMm10,553 netHg19,253 netHg19,512 netHg19,550 netMm10,253 netMm10,512 netMm10,550 matching chainHg19,256 chainMm10,256 chainNetHg19,259 chainNetMm10,259 netHg19,256 netMm10,256 matrix chainHg19,663 chainHg19,695 chainMm10,663 chainMm10,695 chainNetHg19,666 chainNetHg19,698 chainNetMm10,666 chainNetMm10,698 netHg19,663 netHg19,695 netMm10,663 netMm10,695 maximally chainHg19,655 chainMm10,655 chainNetHg19,658 chainNetMm10,658 cpgIslandExt,250 cpgIslandExtUnmasked,253 cpgIslandSuper,250 netHg19,655 netMm10,655 maxtracks augustusGene,139 may chainHg19,171 chainHg19,426 chainMm10,171 chainMm10,426 chainNetHg19,174 chainNetHg19,429 chainNetMm10,174 chainNetMm10,429 cpgIslandExt,36 cpgIslandExtUnmasked,39 cpgIslandSuper,36 gc5BaseBw,40 nestedRepeats,268 nestedRepeats,290 netHg19,171 netHg19,426 netMm10,171 netMm10,426 quality,55 rmsk,297 rmsk,307 simpleRepeat,43 mcgarvey xenoRefGene,335 medium chainHg19,700 chainMm10,700 chainNetHg19,703 chainNetMm10,703 netHg19,700 netMm10,700 xenoRefGene,71 mellifera augustusGene,216 mementos nestedRepeats,377 rmsk,400 menu xenoRefGene,172 method ensGene,120 methods augustusGene,46 chainHg19,562 chainHg19,763 chainMm10,562 chainMm10,763 chainNetHg19,565 chainNetHg19,766 chainNetMm10,565 chainNetMm10,766 cpgIslandExt,224 cpgIslandExtUnmasked,227 cpgIslandSuper,224 ensGene,29 ensGene,35 ensemblGeneScaffold,63 ensemblGeneScaffold,81 genscan,130 genscan,197 microsat,45 nestedRepeats,244 netHg19,562 netHg19,763 netMm10,562 netMm10,763 rmsk,286 simpleRepeat,55 windowmaskerSdust,46 xenoRefGene,215 methylated cpgIslandExt,71 cpgIslandExt,100 cpgIslandExt,132 cpgIslandExtUnmasked,74 cpgIslandExtUnmasked,103 cpgIslandExtUnmasked,135 cpgIslandSuper,71 cpgIslandSuper,100 cpgIslandSuper,132 methylation cpgIslandExt,73 cpgIslandExtUnmasked,76 cpgIslandSuper,73 micro-satellites rmsk,180 microsatellite microsat,1 microsat,22 microsatellites microsat,2 miklem cpgIslandExt,598 cpgIslandExtUnmasked,601 cpgIslandSuper,598 miller chainHg19,928 chainHg19,965 chainHg19,1026 chainHg19,1046 chainHg19,1094 chainMm10,928 chainMm10,965 chainMm10,1026 chainMm10,1046 chainMm10,1094 chainNetHg19,931 chainNetHg19,968 chainNetHg19,1029 chainNetHg19,1049 chainNetHg19,1097 chainNetMm10,931 chainNetMm10,968 chainNetMm10,1029 chainNetMm10,1049 chainNetMm10,1097 netHg19,928 netHg19,965 netHg19,1026 netHg19,1046 netHg19,1094 netMm10,928 netMm10,965 netMm10,1026 netMm10,1046 netMm10,1094 minexonintronprob augustusGene,135 minimum chainHg19,676 chainMm10,676 chainNetHg19,679 chainNetMm10,679 netHg19,676 netMm10,676 minmeanexonintronprob augustusGene,137 minmei chainHg19,920 chainMm10,920 chainNetHg19,923 chainNetMm10,923 netHg19,920 netMm10,920 mismatch rmsk,218 mj xenoRefGene,334 mk_counts windowmaskerSdust,59 mm10 chainMm10,7 chainMm10,69 chainMm10,303 chainNetMm10,8 chainNetMm10,72 chainNetMm10,306 chainNetMm10Viewchain,6 chainNetMm10Viewnet,6 netMm10,7 netMm10,69 netMm10,303 mode chainHg19,381 chainMm10,381 chainNetHg19,384 chainNetMm10,384 gold,59 nestedRepeats,119 nestedRepeats,160 nestedRepeats,169 netHg19,381 netMm10,381 rmsk,142 model augustusGene,121 augustusGene,326 genscan,140 modeling genscan,182 models augustusGene,49 augustusGene,65 augustusGene,97 augustusGene,145 augustusGene,178 genscan,158 modes chainHg19,238 chainMm10,238 chainNetHg19,241 chainNetMm10,241 netHg19,238 netMm10,238 modification cpgIslandExt,591 cpgIslandExtUnmasked,594 cpgIslandSuper,591 modified rmsk,57 mol cpgIslandExt,614 cpgIslandExtUnmasked,617 cpgIslandSuper,614 genscan,221 molecular genscan,199 more augustusGene,35 chainHg19,160 chainHg19,220 chainMm10,160 chainMm10,220 chainNetHg19,163 chainNetHg19,223 chainNetMm10,163 chainNetMm10,223 cpgIslandExt,541 cpgIslandExtUnmasked,544 cpgIslandSuper,541 ensGene,18 ensGene,158 genscan,50 genscan,125 genscan,163 microsat,96 nestedRepeats,211 nestedRepeats,300 netHg19,160 netHg19,220 netMm10,160 netMm10,220 rmsk,323 simpleRepeat,57 xenoRefGene,174 morgulis windowmaskerSdust,90 most augustusGene,93 augustusGene,110 nestedRepeats,249 mouse chainHg19,1059 chainMm10,1 chainMm10,3 chainMm10,65 chainMm10,96 chainMm10,148 chainMm10,266 chainMm10,291 chainMm10,572 chainMm10,620 chainMm10,1059 chainNetHg19,1062 chainNetMm10,1 chainNetMm10,4 chainNetMm10,68 chainNetMm10,99 chainNetMm10,151 chainNetMm10,269 chainNetMm10,294 chainNetMm10,575 chainNetMm10,623 chainNetMm10,1062 chainNetMm10Viewchain,2 chainNetMm10Viewnet,2 netHg19,1059 netMm10,1 netMm10,3 netMm10,65 netMm10,96 netMm10,148 netMm10,266 netMm10,291 netMm10,572 netMm10,620 netMm10,1059 much chainHg19,877 chainHg19,894 chainMm10,877 chainMm10,894 chainNetHg19,880 chainNetHg19,897 chainNetMm10,880 chainNetMm10,897 nestedRepeats,210 netHg19,877 netHg19,894 netMm10,877 netMm10,894 multiple chainHg19,192 chainMm10,192 chainNetHg19,195 chainNetMm10,195 netHg19,192 netMm10,192 xenoRefGene,242 mutation chainHg19,181 chainMm10,181 chainNetHg19,184 chainNetMm10,184 netHg19,181 netMm10,181 mysql cpgIslandExt,538 cpgIslandExtUnmasked,541 cpgIslandSuper,538 ensGene,115 ensGene,125 ensemblGeneScaffold,71 n cpgIslandExt,386 cpgIslandExt,394 cpgIslandExt,456 cpgIslandExtUnmasked,389 cpgIslandExtUnmasked,397 cpgIslandExtUnmasked,459 cpgIslandSuper,386 cpgIslandSuper,394 cpgIslandSuper,456 name chainHg19,363 chainMm10,363 chainNetHg19,366 chainNetMm10,366 nestedRepeats,136 netHg19,363 netMm10,363 xenoRefGene,107 xenoRefGene,117 xenoRefGene,122 names chainHg19,242 chainMm10,242 chainNetHg19,245 chainNetMm10,245 netHg19,242 netMm10,242 xenoRefGene,129 native augustusGene,295 natl chainHg19,1064 chainMm10,1064 chainNetHg19,1067 chainNetMm10,1067 netHg19,1064 netMm10,1064 natural chainHg19,815 chainMm10,815 chainNetHg19,818 chainNetMm10,818 netHg19,815 netMm10,815 nbsp chainHg19,666 chainMm10,666 chainNetHg19,669 chainNetMm10,669 netHg19,666 netMm10,666 ncbi windowmaskerSdust,29 windowmaskerSdust,43 xenoRefGene,27 xenoRefGene,296 xenoRefGene,365 near cpgIslandExt,31 cpgIslandExtUnmasked,34 cpgIslandSuper,31 necessary chainHg19,799 chainMm10,799 chainNetHg19,802 chainNetMm10,802 netHg19,799 netMm10,799 nematodes augustusGene,211 net chainHg19,34 chainHg19,258 chainHg19,261 chainHg19,376 chainHg19,753 chainMm10,34 chainMm10,258 chainMm10,261 chainMm10,376 chainMm10,753 chainNetHg19,3 chainNetHg19,11 chainNetHg19,37 chainNetHg19,261 chainNetHg19,264 chainNetHg19,379 chainNetHg19,756 chainNetHg19Viewchain,9 chainNetHg19Viewnet,1 chainNetHg19Viewnet,9 chainNetMm10,3 chainNetMm10,11 chainNetMm10,37 chainNetMm10,261 chainNetMm10,264 chainNetMm10,379 chainNetMm10,756 chainNetMm10Viewchain,9 chainNetMm10Viewnet,1 chainNetMm10Viewnet,9 netHg19,2 netHg19,9 netHg19,34 netHg19,258 netHg19,261 netHg19,376 netHg19,753 netMm10,2 netMm10,9 netMm10,34 netMm10,258 netMm10,261 netMm10,376 netMm10,753 netclass chainHg19,869 chainHg19,992 chainMm10,869 chainMm10,992 chainNetHg19,872 chainNetHg19,995 chainNetMm10,872 chainNetMm10,995 netHg19,869 netHg19,992 netMm10,869 netMm10,992 nets chainHg19,979 chainMm10,979 chainNetHg19,982 chainNetMm10,982 netHg19,979 netMm10,979 netsyntenic chainHg19,837 chainHg19,990 chainMm10,837 chainMm10,990 chainNetHg19,840 chainNetHg19,993 chainNetMm10,840 chainNetMm10,993 netHg19,837 netHg19,990 netMm10,837 netMm10,990 new augustusGene,329 newer nestedRepeats,270 rmsk,106 newly cpgIslandExt,77 cpgIslandExtUnmasked,80 cpgIslandSuper,77 next chainHg19,342 chainHg19,371 chainMm10,342 chainMm10,371 chainNetHg19,345 chainNetHg19,374 chainNetMm10,345 chainNetMm10,374 netHg19,342 netHg19,371 netMm10,342 netMm10,371 nig augustusGene,270 no microsat,73 nomask cpgIslandExt,498 cpgIslandExtUnmasked,501 cpgIslandSuper,498 non-alignable chainHg19,49 chainMm10,49 chainNetHg19,52 chainNetMm10,52 netHg19,49 netMm10,49 non-coding augustusGene,75 xenoRefGene,191 non-protein-coding xenoRefGene,17 xenoRefGene,199 non-redundant xenoRefGene,371 non-tenrec xenoRefGene,3 nonsyn chainHg19,548 chainMm10,548 chainNetHg19,551 chainNetMm10,551 netHg19,548 netMm10,548 normally cpgIslandExt,42 cpgIslandExtUnmasked,45 cpgIslandSuper,42 not chainHg19,804 chainMm10,804 chainNetHg19,807 chainNetMm10,807 cpgIslandExt,131 cpgIslandExt,186 cpgIslandExtUnmasked,134 cpgIslandExtUnmasked,189 cpgIslandSuper,131 cpgIslandSuper,186 ensemblGeneScaffold,45 netHg19,804 netMm10,804 rmsk,113 rmsk,313 note nestedRepeats,264 novo augustusGene,304 ns chainHg19,884 chainMm10,884 chainNetHg19,887 chainNetMm10,887 netHg19,884 netMm10,884 nuclear rmsk,155 rmsk,163 nucleic ensGene,195 ensemblGeneScaffold,134 microsat,125 simpleRepeat,85 xenoRefGene,346 xenoRefGene,379 nucleotide cpgIslandExt,352 cpgIslandExtUnmasked,355 cpgIslandSuper,352 number augustusGene,153 cpgIslandExt,279 cpgIslandExt,286 cpgIslandExt,292 cpgIslandExt,337 cpgIslandExt,383 cpgIslandExt,387 cpgIslandExt,390 cpgIslandExtUnmasked,282 cpgIslandExtUnmasked,289 cpgIslandExtUnmasked,295 cpgIslandExtUnmasked,340 cpgIslandExtUnmasked,386 cpgIslandExtUnmasked,390 cpgIslandExtUnmasked,393 cpgIslandSuper,279 cpgIslandSuper,286 cpgIslandSuper,292 cpgIslandSuper,337 cpgIslandSuper,383 cpgIslandSuper,387 cpgIslandSuper,390 rmsk,233 o xenoRefGene,328 obs cpgIslandExt,380 cpgIslandExtUnmasked,383 cpgIslandSuper,380 observed cpgIslandExt,278 cpgIslandExt,364 cpgIslandExtUnmasked,281 cpgIslandExtUnmasked,367 cpgIslandSuper,278 cpgIslandSuper,364 obtained augustusGene,126 cpgIslandExt,562 cpgIslandExt,573 cpgIslandExtUnmasked,565 cpgIslandExtUnmasked,576 cpgIslandSuper,562 cpgIslandSuper,573 occur simpleRepeat,36 oct augustusGene,334 of augustusGene,72 augustusGene,84 augustusGene,92 augustusGene,94 augustusGene,154 augustusGene,195 augustusGene,236 chainHg19,17 chainHg19,64 chainHg19,179 chainHg19,199 chainHg19,251 chainHg19,272 chainHg19,354 chainHg19,364 chainHg19,482 chainHg19,502 chainHg19,635 chainHg19,640 chainHg19,658 chainHg19,678 chainHg19,878 chainHg19,953 chainHg19,975 chainHg19,999 chainHg19,1013 chainMm10,17 chainMm10,64 chainMm10,179 chainMm10,199 chainMm10,251 chainMm10,272 chainMm10,354 chainMm10,364 chainMm10,482 chainMm10,502 chainMm10,635 chainMm10,640 chainMm10,658 chainMm10,678 chainMm10,878 chainMm10,953 chainMm10,975 chainMm10,999 chainMm10,1013 chainNetHg19,20 chainNetHg19,67 chainNetHg19,182 chainNetHg19,202 chainNetHg19,254 chainNetHg19,275 chainNetHg19,357 chainNetHg19,367 chainNetHg19,485 chainNetHg19,505 chainNetHg19,638 chainNetHg19,643 chainNetHg19,661 chainNetHg19,681 chainNetHg19,881 chainNetHg19,956 chainNetHg19,978 chainNetHg19,1002 chainNetHg19,1016 chainNetMm10,20 chainNetMm10,67 chainNetMm10,182 chainNetMm10,202 chainNetMm10,254 chainNetMm10,275 chainNetMm10,357 chainNetMm10,367 chainNetMm10,485 chainNetMm10,505 chainNetMm10,638 chainNetMm10,643 chainNetMm10,661 chainNetMm10,681 chainNetMm10,881 chainNetMm10,956 chainNetMm10,978 chainNetMm10,1002 chainNetMm10,1016 cpgIslandExt,91 cpgIslandExt,108 cpgIslandExt,144 cpgIslandExt,171 cpgIslandExt,200 cpgIslandExt,221 cpgIslandExt,264 cpgIslandExt,277 cpgIslandExt,280 cpgIslandExt,290 cpgIslandExt,293 cpgIslandExt,312 cpgIslandExt,338 cpgIslandExt,350 cpgIslandExt,363 cpgIslandExt,384 cpgIslandExt,388 cpgIslandExt,391 cpgIslandExt,396 cpgIslandExt,400 cpgIslandExt,592 cpgIslandExtUnmasked,94 cpgIslandExtUnmasked,111 cpgIslandExtUnmasked,147 cpgIslandExtUnmasked,174 cpgIslandExtUnmasked,203 cpgIslandExtUnmasked,224 cpgIslandExtUnmasked,267 cpgIslandExtUnmasked,280 cpgIslandExtUnmasked,283 cpgIslandExtUnmasked,293 cpgIslandExtUnmasked,296 cpgIslandExtUnmasked,315 cpgIslandExtUnmasked,341 cpgIslandExtUnmasked,353 cpgIslandExtUnmasked,366 cpgIslandExtUnmasked,387 cpgIslandExtUnmasked,391 cpgIslandExtUnmasked,394 cpgIslandExtUnmasked,399 cpgIslandExtUnmasked,403 cpgIslandExtUnmasked,595 cpgIslandSuper,91 cpgIslandSuper,108 cpgIslandSuper,144 cpgIslandSuper,171 cpgIslandSuper,200 cpgIslandSuper,221 cpgIslandSuper,264 cpgIslandSuper,277 cpgIslandSuper,280 cpgIslandSuper,290 cpgIslandSuper,293 cpgIslandSuper,312 cpgIslandSuper,338 cpgIslandSuper,350 cpgIslandSuper,363 cpgIslandSuper,384 cpgIslandSuper,388 cpgIslandSuper,391 cpgIslandSuper,396 cpgIslandSuper,400 cpgIslandSuper,592 ensGene,33 ensGene,134 ensemblGeneScaffold,16 ensemblGeneScaffold,39 ensemblGeneScaffold,79 gap,20 gap,46 gap,52 gap,82 gap,89 gap,101 gc5BaseBw,19 gc5BaseBw,46 gc5BaseBw,52 gc5BaseBw,67 gc5BaseBw,76 genscan,43 genscan,110 genscan,134 genscan,212 gold,15 gold,78 gold,103 gold,131 microsat,27 microsat,55 microsat,64 microsat,81 nestedRepeats,4 nestedRepeats,20 nestedRepeats,27 nestedRepeats,48 nestedRepeats,83 nestedRepeats,93 nestedRepeats,108 nestedRepeats,189 nestedRepeats,195 nestedRepeats,203 nestedRepeats,228 nestedRepeats,252 nestedRepeats,350 nestedRepeats,365 nestedRepeats,378 nestedRepeats,399 netHg19,17 netHg19,64 netHg19,179 netHg19,199 netHg19,251 netHg19,272 netHg19,354 netHg19,364 netHg19,482 netHg19,502 netHg19,635 netHg19,640 netHg19,658 netHg19,678 netHg19,878 netHg19,953 netHg19,975 netHg19,999 netHg19,1013 netMm10,17 netMm10,64 netMm10,179 netMm10,199 netMm10,251 netMm10,272 netMm10,354 netMm10,364 netMm10,482 netMm10,502 netMm10,635 netMm10,640 netMm10,658 netMm10,678 netMm10,878 netMm10,953 netMm10,975 netMm10,999 netMm10,1013 quality,20 quality,31 quality,37 quality,61 quality,67 quality,80 quality,92 rmsk,39 rmsk,59 rmsk,84 rmsk,151 rmsk,206 rmsk,216 rmsk,234 rmsk,246 rmsk,264 rmsk,373 rmsk,388 rmsk,401 rmsk,422 simpleRepeat,40 xenoRefGene,61 xenoRefGene,80 xenoRefGene,94 xenoRefGene,119 xenoRefGene,230 xenoRefGene,262 xenoRefGene,374 off chainHg19,333 chainHg19,339 chainMm10,333 chainMm10,339 chainNetHg19,336 chainNetHg19,342 chainNetMm10,336 chainNetMm10,342 netHg19,333 netHg19,339 netMm10,333 netMm10,339 xenoRefGene,132 offers genscan,79 often chainHg19,209 chainHg19,221 chainMm10,209 chainMm10,221 chainNetHg19,212 chainNetHg19,224 chainNetMm10,212 chainNetMm10,224 netHg19,209 netHg19,221 netMm10,209 netMm10,221 omitted nestedRepeats,165 on augustusGene,29 augustusGene,37 augustusGene,151 chainHg19,321 chainHg19,347 chainHg19,450 chainHg19,464 chainHg19,514 chainHg19,519 chainHg19,534 chainHg19,765 chainMm10,321 chainMm10,347 chainMm10,450 chainMm10,464 chainMm10,514 chainMm10,519 chainMm10,534 chainMm10,765 chainNetHg19,324 chainNetHg19,350 chainNetHg19,453 chainNetHg19,467 chainNetHg19,517 chainNetHg19,522 chainNetHg19,537 chainNetHg19,768 chainNetMm10,324 chainNetMm10,350 chainNetMm10,453 chainNetMm10,467 chainNetMm10,517 chainNetMm10,522 chainNetMm10,537 chainNetMm10,768 cpgIslandExt,287 cpgIslandExt,323 cpgIslandExt,544 cpgIslandExt,551 cpgIslandExtUnmasked,5 cpgIslandExtUnmasked,290 cpgIslandExtUnmasked,326 cpgIslandExtUnmasked,547 cpgIslandExtUnmasked,554 cpgIslandSuper,287 cpgIslandSuper,323 cpgIslandSuper,544 cpgIslandSuper,551 ensGene,20 ensGene,118 ensGene,123 ensGene,129 ensGene,140 gap,49 genscan,27 genscan,52 gold,53 nestedRepeats,141 nestedRepeats,176 nestedRepeats,277 netHg19,321 netHg19,347 netHg19,450 netHg19,464 netHg19,514 netHg19,519 netHg19,534 netHg19,765 netMm10,321 netMm10,347 netMm10,450 netMm10,464 netMm10,514 netMm10,519 netMm10,534 netMm10,765 rmsk,74 xenoRefGene,342 one augustusGene,169 chainHg19,187 chainHg19,355 chainHg19,501 chainHg19,792 chainHg19,888 chainMm10,187 chainMm10,355 chainMm10,501 chainMm10,792 chainMm10,888 chainNetHg19,190 chainNetHg19,358 chainNetHg19,504 chainNetHg19,795 chainNetHg19,891 chainNetMm10,190 chainNetMm10,358 chainNetMm10,504 chainNetMm10,795 chainNetMm10,891 cpgIslandExt,233 cpgIslandExtUnmasked,236 cpgIslandSuper,233 netHg19,187 netHg19,355 netHg19,501 netHg19,792 netHg19,888 netMm10,187 netMm10,355 netMm10,501 netMm10,792 netMm10,888 only chainHg19,351 chainMm10,351 chainNetHg19,354 chainNetMm10,354 cpgIslandExt,196 cpgIslandExtUnmasked,199 cpgIslandSuper,196 microsat,61 netHg19,351 netMm10,351 xenoRefGene,208 xenoRefGene,253 onto ensemblGeneScaffold,21 open-3.0 nestedRepeats,331 rmsk,354 opin nestedRepeats,385 nestedRepeats,407 rmsk,408 rmsk,430 opposite chainHg19,546 chainMm10,546 chainNetHg19,549 chainNetMm10,549 netHg19,546 netMm10,546 option augustusGene,167 augustusGene,187 genscan,94 xenoRefGene,112 xenoRefGene,164 optional xenoRefGene,142 options gc5BaseBw,70 genscan,85 quality,83 or chainHg19,30 chainHg19,127 chainHg19,150 chainHg19,182 chainHg19,485 chainHg19,860 chainHg19,889 chainMm10,30 chainMm10,127 chainMm10,150 chainMm10,182 chainMm10,485 chainMm10,860 chainMm10,889 chainNetHg19,33 chainNetHg19,130 chainNetHg19,153 chainNetHg19,185 chainNetHg19,488 chainNetHg19,863 chainNetHg19,892 chainNetMm10,33 chainNetMm10,130 chainNetMm10,153 chainNetMm10,185 chainNetMm10,488 chainNetMm10,863 chainNetMm10,892 cpgIslandExt,127 cpgIslandExt,266 cpgIslandExt,523 cpgIslandExtUnmasked,130 cpgIslandExtUnmasked,269 cpgIslandExtUnmasked,526 cpgIslandSuper,127 cpgIslandSuper,266 cpgIslandSuper,523 ensGene,68 ensGene,89 ensGene,110 ensemblGeneScaffold,26 ensemblGeneScaffold,54 nestedRepeats,96 nestedRepeats,117 nestedRepeats,158 netHg19,30 netHg19,127 netHg19,150 netHg19,182 netHg19,485 netHg19,860 netHg19,889 netMm10,30 netMm10,127 netMm10,150 netMm10,182 netMm10,485 netMm10,860 netMm10,889 rmsk,251 rmsk,280 xenoRefGene,130 order ensemblGeneScaffold,49 gap,43 gold,41 gold,100 organism chainHg19,330 chainHg19,360 chainMm10,330 chainMm10,360 chainNetHg19,333 chainNetHg19,363 chainNetMm10,333 chainNetMm10,363 netHg19,330 netHg19,360 netMm10,330 netMm10,360 organisms chainHg19,905 chainMm10,905 chainNetHg19,908 chainNetMm10,908 nestedRepeats,295 netHg19,905 netMm10,905 rmsk,302 xenoRefGene,20 organizes chainHg19,614 chainMm10,614 chainNetHg19,617 chainNetMm10,617 netHg19,614 netMm10,614 orientation chainHg19,547 chainMm10,547 chainNetHg19,550 chainNetMm10,550 cytoBandIdeo,6 gap,45 gold,42 gold,102 netHg19,547 netMm10,547 origin nestedRepeats,398 rmsk,421 original nestedRepeats,84 orthologs chainHg19,284 chainMm10,284 chainNetHg19,287 chainNetMm10,287 netHg19,284 netMm10,284 other augustusGene,208 chainHg19,24 chainHg19,412 chainHg19,505 chainMm10,24 chainMm10,412 chainMm10,505 chainNetHg19,27 chainNetHg19,415 chainNetHg19,508 chainNetMm10,27 chainNetMm10,415 chainNetMm10,508 cpgIslandExt,135 cpgIslandExtUnmasked,138 cpgIslandSuper,135 nestedRepeats,376 netHg19,24 netHg19,412 netHg19,505 netMm10,24 netMm10,412 netMm10,505 rmsk,195 rmsk,399 xenoRefGene,1 xenoRefGene,21 others cpgIslandExt,247 cpgIslandExtUnmasked,250 cpgIslandSuper,247 nestedRepeats,214 otherwise cpgIslandExt,185 cpgIslandExtUnmasked,188 cpgIslandSuper,185 ouml augustusGene,269 our augustusGene,43 cpgIslandExt,536 cpgIslandExt,545 cpgIslandExt,552 cpgIslandExtUnmasked,539 cpgIslandExtUnmasked,548 cpgIslandExtUnmasked,555 cpgIslandSuper,536 cpgIslandSuper,545 cpgIslandSuper,552 ensGene,26 ensGene,84 ensGene,91 ensGene,113 ensGene,124 ensGene,130 ensGene,141 genscan,58 rmsk,124 rmsk,129 out chainHg19,634 chainMm10,634 chainNetHg19,637 chainNetMm10,637 netHg19,634 netMm10,634 quality,42 output cpgIslandExt,499 cpgIslandExtUnmasked,502 cpgIslandSuper,499 nestedRepeats,26 nestedRepeats,110 windowmaskerSdust,63 windowmaskerSdust,72 outputs rmsk,35 over chainHg19,195 chainHg19,649 chainMm10,195 chainMm10,649 chainNetHg19,198 chainNetHg19,652 chainNetMm10,198 chainNetMm10,652 cpgIslandExt,97 cpgIslandExtUnmasked,100 cpgIslandSuper,97 netHg19,195 netHg19,649 netMm10,195 netMm10,649 overlapping chainHg19,112 chainHg19,175 chainMm10,112 chainMm10,175 chainNetHg19,115 chainNetHg19,178 chainNetMm10,115 chainNetMm10,178 gap,102 netHg19,112 netHg19,175 netMm10,112 netMm10,175 p genscan,205 nestedRepeats,329 rmsk,352 pac chainHg19,1033 chainMm10,1033 chainNetHg19,1036 chainNetMm10,1036 netHg19,1033 netMm10,1033 pack chainHg19,231 chainMm10,231 chainNetHg19,234 chainNetMm10,234 nestedRepeats,116 netHg19,231 netMm10,231 page cpgIslandExt,223 cpgIslandExt,547 cpgIslandExtUnmasked,226 cpgIslandExtUnmasked,550 cpgIslandSuper,223 cpgIslandSuper,547 ensGene,127 ensGene,166 genscan,78 genscan,123 rmsk,77 xenoRefGene,98 xenoRefGene,189 pages chainHg19,770 chainMm10,770 chainNetHg19,773 chainNetMm10,773 netHg19,770 netMm10,770 paired-end gold,54 pairwise chainHg19,1011 chainHg19,1029 chainMm10,1011 chainMm10,1029 chainNetHg19,1014 chainNetHg19,1032 chainNetMm10,1014 chainNetMm10,1032 netHg19,1011 netHg19,1029 netMm10,1011 netMm10,1029 paralogs chainHg19,224 chainMm10,224 chainNetHg19,227 chainNetMm10,227 netHg19,224 netMm10,224 parameters windowmaskerSdust,57 parent cpgIslandExt,83 cpgIslandExtUnmasked,86 cpgIslandSuper,83 part chainHg19,271 chainMm10,271 chainNetHg19,274 chainNetMm10,274 netHg19,271 netMm10,271 quality,91 particular augustusGene,234 chainHg19,197 chainMm10,197 chainNetHg19,200 chainNetMm10,200 netHg19,197 netMm10,197 particularly cpgIslandExt,21 cpgIslandExtUnmasked,24 cpgIslandSuper,21 parts chainHg19,39 chainHg19,50 chainMm10,39 chainMm10,50 chainNetHg19,42 chainNetHg19,53 chainNetMm10,42 chainNetMm10,53 netHg19,39 netHg19,50 netMm10,39 netMm10,50 patterns augustusGene,56 pennsylvania chainHg19,916 chainHg19,1019 chainMm10,916 chainMm10,1019 chainNetHg19,919 chainNetHg19,1022 chainNetMm10,919 chainNetMm10,1022 netHg19,916 netHg19,1019 netMm10,916 netMm10,1019 percent gc5BaseBw,2 gc5BaseBw,4 gc5BaseBw,14 percentage cpgIslandExt,345 cpgIslandExtUnmasked,348 cpgIslandSuper,345 gc5BaseBw,18 perfect microsat,31 performed cpgIslandExt,405 cpgIslandExtUnmasked,408 cpgIslandSuper,405 perhaps cpgIslandExt,137 cpgIslandExtUnmasked,140 cpgIslandSuper,137 period microsat,65 permitted rmsk,314 ph.d chainHg19,1016 chainMm10,1016 chainNetHg19,1019 chainNetMm10,1019 netHg19,1016 netMm10,1016 place chainHg19,789 chainMm10,789 chainNetHg19,792 chainNetMm10,792 netHg19,789 netMm10,789 placed chainHg19,831 chainMm10,831 chainNetHg19,834 chainNetMm10,834 netHg19,831 netMm10,831 places xenoRefGene,243 please ensGene,41 ensGene,160 pmc chainHg19,1078 chainHg19,1109 chainMm10,1078 chainMm10,1109 chainNetHg19,1081 chainNetHg19,1112 chainNetMm10,1081 chainNetMm10,1112 ensGene,206 ensemblGeneScaffold,145 microsat,136 netHg19,1078 netHg19,1109 netMm10,1078 netMm10,1109 simpleRepeat,96 xenoRefGene,315 xenoRefGene,357 xenoRefGene,391 pmc148217 microsat,137 simpleRepeat,97 pmc187518 xenoRefGene,316 pmc208784 chainHg19,1079 chainMm10,1079 chainNetHg19,1082 chainNetMm10,1082 netHg19,1079 netMm10,1079 pmc3965018 xenoRefGene,358 pmc430961 chainHg19,1110 chainMm10,1110 chainNetHg19,1113 chainNetMm10,1113 netHg19,1110 netMm10,1110 pmc539979 xenoRefGene,392 pmc99161 ensGene,207 ensemblGeneScaffold,146 pmid augustusGene,314 augustusGene,339 chainHg19,1038 chainHg19,1076 chainHg19,1107 chainMm10,1038 chainMm10,1076 chainMm10,1107 chainNetHg19,1041 chainNetHg19,1079 chainNetHg19,1110 chainNetMm10,1041 chainNetMm10,1079 chainNetMm10,1110 cpgIslandExt,622 cpgIslandExtUnmasked,625 cpgIslandSuper,622 ensGene,204 ensemblGeneScaffold,143 genscan,229 microsat,134 nestedRepeats,360 nestedRepeats,393 nestedRepeats,415 netHg19,1038 netHg19,1076 netHg19,1107 netMm10,1038 netMm10,1076 netMm10,1107 rmsk,383 rmsk,416 rmsk,438 simpleRepeat,94 windowmaskerSdust,113 xenoRefGene,313 xenoRefGene,355 xenoRefGene,389 point rmsk,269 poly-a augustusGene,62 polymorphic microsat,41 simpleRepeat,46 population microsat,44 position chainHg19,705 chainMm10,705 chainNetHg19,708 chainNetMm10,708 netHg19,705 netMm10,705 quality,30 possible chainHg19,406 chainMm10,406 chainNetHg19,409 chainNetMm10,409 gold,28 netHg19,406 netMm10,406 possibly chainHg19,283 chainMm10,283 chainNetHg19,286 chainNetMm10,286 netHg19,283 netMm10,283 simpleRepeat,18 potential cpgIslandExt,175 cpgIslandExtUnmasked,178 cpgIslandSuper,175 pre-mrna genscan,185 predicted cpgIslandExt,228 cpgIslandExtUnmasked,231 cpgIslandSuper,228 xenoRefGene,68 prediction augustusGene,321 ensemblGeneScaffold,86 genscan,73 genscan,211 xenoRefGene,53 predictions augustusGene,6 augustusGene,11 augustusGene,18 augustusGene,26 augustusGene,191 ensGene,8 ensGene,12 ensGene,40 genscan,5 genscan,9 genscan,14 genscan,24 genscan,112 genscan,118 xenoRefGene,9 xenoRefGene,155 xenoRefGene,184 prepared gc5BaseBw,80 present cpgIslandExt,154 cpgIslandExtUnmasked,157 cpgIslandSuper,154 rmsk,44 presentation gc5BaseBw,75 pressure cpgIslandExt,123 cpgIslandExtUnmasked,126 cpgIslandSuper,123 previous ensGene,132 previously chainHg19,909 chainMm10,909 chainNetHg19,912 chainNetMm10,912 netHg19,909 netMm10,909 principal gap,80 printf cpgIslandExt,435 cpgIslandExtUnmasked,438 cpgIslandSuper,435 proc chainHg19,1063 chainMm10,1063 chainNetHg19,1066 chainNetMm10,1066 netHg19,1063 netMm10,1063 process chainHg19,813 chainMm10,813 chainNetHg19,816 chainNetMm10,816 gap,30 netHg19,813 netMm10,813 processed chainHg19,212 chainMm10,212 chainNetHg19,215 chainNetMm10,215 netHg19,212 netMm10,212 produced xenoRefGene,281 program augustusGene,21 augustusGene,257 chainHg19,605 chainHg19,645 chainHg19,783 chainHg19,836 chainHg19,868 chainHg19,944 chainHg19,947 chainMm10,605 chainMm10,645 chainMm10,783 chainMm10,836 chainMm10,868 chainMm10,944 chainMm10,947 chainNetHg19,608 chainNetHg19,648 chainNetHg19,786 chainNetHg19,839 chainNetHg19,871 chainNetHg19,947 chainNetHg19,950 chainNetMm10,608 chainNetMm10,648 chainNetMm10,786 chainNetMm10,839 chainNetMm10,871 chainNetMm10,947 chainNetMm10,950 cpgIslandExt,559 cpgIslandExt,569 cpgIslandExt,594 cpgIslandExtUnmasked,562 cpgIslandExtUnmasked,572 cpgIslandExtUnmasked,597 cpgIslandSuper,559 cpgIslandSuper,569 cpgIslandSuper,594 genscan,18 genscan,137 genscan,178 microsat,100 microsat,120 nestedRepeats,30 netHg19,605 netHg19,645 netHg19,783 netHg19,836 netHg19,868 netHg19,944 netHg19,947 netMm10,605 netMm10,645 netMm10,783 netMm10,836 netMm10,868 netMm10,944 netMm10,947 rmsk,20 rmsk,34 simpleRepeat,62 simpleRepeat,80 programmatic ensGene,99 programs chainHg19,993 chainMm10,993 chainNetHg19,996 chainNetMm10,996 netHg19,993 netMm10,993 project ensGene,194 ensemblGeneScaffold,133 xenoRefGene,298 promoter cpgIslandExt,40 cpgIslandExtUnmasked,43 cpgIslandSuper,40 proofreading cpgIslandExt,93 cpgIslandExtUnmasked,96 cpgIslandSuper,93 protein-coding augustusGene,73 xenoRefGene,15 xenoRefGene,197 proteins xenoRefGene,378 provided quality,89 providing augustusGene,254 ensGene,153 ensemblGeneScaffold,103 genscan,175 nestedRepeats,312 rmsk,335 provisional xenoRefGene,70 pruitt xenoRefGene,317 xenoRefGene,359 pseudogenes chainHg19,213 chainHg19,227 chainMm10,213 chainMm10,227 chainNetHg19,216 chainNetHg19,230 chainNetMm10,216 chainNetMm10,230 netHg19,213 netHg19,227 netMm10,213 netMm10,227 public cpgIslandExt,537 cpgIslandExtUnmasked,540 cpgIslandSuper,537 ensGene,114 publicly nestedRepeats,275 pull-down xenoRefGene,171 purpose simpleRepeat,32 qgap chainHg19,717 chainMm10,717 chainNetHg19,720 chainNetMm10,720 netHg19,717 netMm10,717 quality quality,1 quality,5 quality,12 quality,18 quality,36 quality,86 queried cpgIslandExt,533 cpgIslandExtUnmasked,536 cpgIslandSuper,533 ensGene,105 query rmsk,47 rmsk,61 quickly xenoRefGene,150 quite simpleRepeat,45 quot chainHg19,26 chainHg19,28 chainHg19,33 chainHg19,35 chainHg19,101 chainHg19,103 chainHg19,230 chainHg19,232 chainHg19,234 chainHg19,236 chainHg19,338 chainHg19,340 chainHg19,679 chainHg19,681 chainMm10,26 chainMm10,28 chainMm10,33 chainMm10,35 chainMm10,101 chainMm10,103 chainMm10,230 chainMm10,232 chainMm10,234 chainMm10,236 chainMm10,338 chainMm10,340 chainMm10,679 chainMm10,681 chainNetHg19,29 chainNetHg19,31 chainNetHg19,36 chainNetHg19,38 chainNetHg19,104 chainNetHg19,106 chainNetHg19,233 chainNetHg19,235 chainNetHg19,237 chainNetHg19,239 chainNetHg19,341 chainNetHg19,343 chainNetHg19,682 chainNetHg19,684 chainNetMm10,29 chainNetMm10,31 chainNetMm10,36 chainNetMm10,38 chainNetMm10,104 chainNetMm10,106 chainNetMm10,233 chainNetMm10,235 chainNetMm10,237 chainNetMm10,239 chainNetMm10,341 chainNetMm10,343 chainNetMm10,682 chainNetMm10,684 gc5BaseBw,58 gc5BaseBw,62 gold,37 gold,39 gold,134 gold,136 netHg19,26 netHg19,28 netHg19,33 netHg19,35 netHg19,101 netHg19,103 netHg19,230 netHg19,232 netHg19,234 netHg19,236 netHg19,338 netHg19,340 netHg19,679 netHg19,681 netMm10,26 netMm10,28 netMm10,33 netMm10,35 netMm10,101 netMm10,103 netMm10,230 netMm10,232 netMm10,234 netMm10,236 netMm10,338 netMm10,340 netMm10,679 netMm10,681 rmsk,130 rmsk,133 rmsk,241 rmsk,242 rmsk,248 rmsk,250 rmsk,252 rmsk,254 rmsk,275 rmsk,276 windowmaskerSdust,82 windowmaskerSdust,84 r augustusGene,291 chainHg19,1043 chainHg19,1089 chainMm10,1043 chainMm10,1089 chainNetHg19,1046 chainNetHg19,1092 chainNetMm10,1046 chainNetMm10,1092 nestedRepeats,327 netHg19,1043 netHg19,1089 netMm10,1043 netMm10,1089 rmsk,350 windowmaskerSdust,99 r.s chainHg19,1008 chainMm10,1008 chainNetHg19,1011 chainNetMm10,1011 netHg19,1008 netMm10,1008 random augustusGene,119 range nestedRepeats,227 nestedRepeats,236 quality,46 ranked chainHg19,780 chainMm10,780 chainNetHg19,783 chainNetMm10,783 netHg19,780 netMm10,780 rare cpgIslandExt,57 cpgIslandExt,118 cpgIslandExtUnmasked,60 cpgIslandExtUnmasked,121 cpgIslandSuper,57 cpgIslandSuper,118 ratio cpgIslandExt,273 cpgIslandExt,349 cpgIslandExt,362 cpgIslandExtUnmasked,276 cpgIslandExtUnmasked,352 cpgIslandExtUnmasked,365 cpgIslandSuper,273 cpgIslandSuper,349 cpgIslandSuper,362 rc chainHg19,1091 chainMm10,1091 chainNetHg19,1094 chainNetMm10,1094 netHg19,1091 netMm10,1091 rmsk,200 read gold,55 reads gap,104 gold,21 rearrangement chainHg19,289 chainHg19,492 chainHg19,1056 chainMm10,289 chainMm10,492 chainMm10,1056 chainNetHg19,292 chainNetHg19,495 chainNetHg19,1059 chainNetMm10,292 chainNetMm10,495 chainNetMm10,1059 netHg19,289 netHg19,492 netHg19,1056 netMm10,289 netMm10,492 netMm10,1056 rearrangements nestedRepeats,99 reason cpgIslandExt,136 cpgIslandExtUnmasked,139 cpgIslandSuper,136 record xenoRefGene,65 refer ensGene,42 ensemblGeneScaffold,87 genscan,144 reference xenoRefGene,29 xenoRefGene,344 xenoRefGene,366 references augustusGene,285 chainHg19,1006 chainMm10,1006 chainNetHg19,1009 chainNetMm10,1009 cpgIslandExt,603 cpgIslandExtUnmasked,606 cpgIslandSuper,603 ensGene,52 ensGene,167 ensemblGeneScaffold,95 ensemblGeneScaffold,106 genscan,152 genscan,179 microsat,113 nestedRepeats,66 nestedRepeats,323 netHg19,1006 netMm10,1006 rmsk,102 rmsk,346 simpleRepeat,73 windowmaskerSdust,89 xenoRefGene,299 reflect quality,49 reflects rmsk,213 refseq xenoRefGene,2 xenoRefGene,4 xenoRefGene,32 xenoRefGene,64 xenoRefGene,297 xenoRefGene,339 xenoRefGene,368 region chainHg19,198 chainHg19,395 chainMm10,198 chainMm10,395 chainNetHg19,201 chainNetHg19,398 chainNetMm10,201 chainNetMm10,398 cpgIslandExt,129 cpgIslandExtUnmasked,132 cpgIslandSuper,129 netHg19,198 netHg19,395 netMm10,198 netMm10,395 regions augustusGene,76 chainHg19,16 chainHg19,134 chainHg19,282 chainMm10,16 chainMm10,134 chainMm10,282 chainNetHg19,19 chainNetHg19,137 chainNetHg19,285 chainNetMm10,19 chainNetMm10,137 chainNetMm10,285 cpgIslandExt,41 cpgIslandExt,150 cpgIslandExt,182 cpgIslandExtUnmasked,44 cpgIslandExtUnmasked,153 cpgIslandExtUnmasked,185 cpgIslandSuper,41 cpgIslandSuper,150 cpgIslandSuper,182 genscan,48 microsat,14 netHg19,16 netHg19,134 netHg19,282 netMm10,16 netMm10,134 netMm10,282 simpleRepeat,39 regulation cpgIslandExt,13 cpgIslandExt,143 cpgIslandExtUnmasked,16 cpgIslandExtUnmasked,146 cpgIslandSuper,13 cpgIslandSuper,143 related augustusGene,242 relationship chainHg19,846 chainMm10,846 chainNetHg19,849 chainNetMm10,849 netHg19,846 netMm10,846 relative chainHg19,862 chainMm10,862 chainNetHg19,865 chainNetMm10,865 gap,42 gold,99 netHg19,862 netMm10,862 relatively cpgIslandExt,117 cpgIslandExtUnmasked,120 cpgIslandSuper,117 remaining chainHg19,685 chainMm10,685 chainNetHg19,688 chainNetMm10,688 netHg19,685 netMm10,685 removed chainHg19,576 chainMm10,576 chainNetHg19,579 chainNetMm10,579 cpgIslandExt,331 cpgIslandExtUnmasked,334 cpgIslandSuper,331 netHg19,576 netMm10,576 rmsk,279 repbase nestedRepeats,45 nestedRepeats,57 nestedRepeats,335 nestedRepeats,342 rmsk,81 rmsk,93 rmsk,114 rmsk,358 rmsk,365 repeat cpgIslandExt,181 cpgIslandExt,191 cpgIslandExtUnmasked,184 cpgIslandExtUnmasked,194 cpgIslandSuper,181 cpgIslandSuper,191 microsat,83 nestedRepeats,85 nestedRepeats,122 nestedRepeats,135 nestedRepeats,257 nestedRepeats,316 rmsk,168 rmsk,175 rmsk,227 rmsk,339 simpleRepeat,47 repeating rmsk,2 repeatmasker chainHg19,943 chainMm10,943 chainNetHg19,946 chainNetMm10,946 nestedRepeats,9 nestedRepeats,29 nestedRepeats,73 nestedRepeats,77 nestedRepeats,109 nestedRepeats,254 nestedRepeats,285 nestedRepeats,330 netHg19,943 netMm10,943 rmsk,1 rmsk,5 rmsk,19 rmsk,78 rmsk,292 rmsk,353 repeats chainHg19,935 chainMm10,935 chainNetHg19,938 chainNetMm10,938 microsat,6 microsat,9 microsat,35 microsat,58 microsat,63 microsat,86 microsat,93 microsat,106 microsat,117 nestedRepeats,6 nestedRepeats,13 nestedRepeats,22 nestedRepeats,37 nestedRepeats,49 nestedRepeats,95 nestedRepeats,366 nestedRepeats,374 nestedRepeats,401 netHg19,935 netMm10,935 rmsk,8 rmsk,27 rmsk,41 rmsk,68 rmsk,85 rmsk,152 rmsk,179 rmsk,183 rmsk,185 rmsk,187 rmsk,196 rmsk,303 rmsk,310 rmsk,389 rmsk,397 rmsk,424 simpleRepeat,2 simpleRepeat,5 simpleRepeat,10 simpleRepeat,17 simpleRepeat,20 simpleRepeat,24 simpleRepeat,34 simpleRepeat,77 windowmaskerSdust,11 repeats.bed windowmaskerSdust,73 windowmaskerSdust,75 repetitive nestedRepeats,351 rmsk,374 represent chainHg19,132 chainHg19,159 chainHg19,442 chainHg19,447 chainMm10,132 chainMm10,159 chainMm10,442 chainMm10,447 chainNetHg19,135 chainNetHg19,162 chainNetHg19,445 chainNetHg19,450 chainNetMm10,135 chainNetMm10,162 chainNetMm10,445 chainNetMm10,450 netHg19,132 netHg19,159 netHg19,442 netHg19,447 netMm10,132 netMm10,159 netMm10,442 netMm10,447 representation quality,98 represented gap,33 rmsk,49 representing gap,72 res chainHg19,1101 chainMm10,1101 chainNetHg19,1104 chainNetMm10,1104 ensGene,197 ensemblGeneScaffold,136 microsat,127 netHg19,1101 netMm10,1101 simpleRepeat,87 xenoRefGene,307 xenoRefGene,348 xenoRefGene,381 research nestedRepeats,54 rmsk,90 rest cpgIslandExt,518 cpgIslandExtUnmasked,521 cpgIslandSuper,518 ensGene,108 result chainHg19,172 chainMm10,172 chainNetHg19,175 chainNetMm10,175 cpgIslandExt,112 cpgIslandExtUnmasked,115 cpgIslandSuper,112 netHg19,172 netMm10,172 resulting chainHg19,595 chainMm10,595 chainNetHg19,598 chainNetMm10,598 netHg19,595 netMm10,595 retroposons rmsk,173 review xenoRefGene,62 reviewed xenoRefGene,72 rna rmsk,186 rmsk,189 xenoRefGene,28 xenoRefGene,239 xenoRefGene,285 rnas xenoRefGene,217 robert chainHg19,983 chainMm10,983 chainNetHg19,986 chainNetMm10,986 nestedRepeats,307 netHg19,983 netMm10,983 rmsk,330 rolling rmsk,201 ross chainHg19,932 chainMm10,932 chainNetHg19,935 chainNetMm10,935 netHg19,932 netMm10,932 row nestedRepeats,179 rpts nestedRepeats,2 rrna rmsk,191 run chainHg19,648 chainMm10,648 chainNetHg19,651 chainNetMm10,651 netHg19,648 netMm10,648 windowmaskerSdust,53 s augustusGene,104 augustusGene,221 augustusGene,319 chainHg19,1051 chainHg19,1068 chainHg19,1081 chainMm10,1051 chainMm10,1068 chainMm10,1081 chainNetHg19,1054 chainNetHg19,1071 chainNetHg19,1084 chainNetMm10,1054 chainNetMm10,1071 chainNetMm10,1084 cpgIslandExt,436 cpgIslandExt,440 cpgIslandExt,442 cpgIslandExt,443 cpgIslandExt,445 cpgIslandExt,447 cpgIslandExt,453 cpgIslandExt,455 cpgIslandExtUnmasked,439 cpgIslandExtUnmasked,443 cpgIslandExtUnmasked,445 cpgIslandExtUnmasked,446 cpgIslandExtUnmasked,448 cpgIslandExtUnmasked,450 cpgIslandExtUnmasked,456 cpgIslandExtUnmasked,458 cpgIslandSuper,436 cpgIslandSuper,440 cpgIslandSuper,442 cpgIslandSuper,443 cpgIslandSuper,445 cpgIslandSuper,447 cpgIslandSuper,453 cpgIslandSuper,455 genscan,190 genscan,194 genscan,210 nestedRepeats,286 netHg19,1051 netHg19,1068 netHg19,1081 netMm10,1051 netMm10,1068 netMm10,1081 rmsk,18 rmsk,293 saccharomyces augustusGene,223 salzberg genscan,189 same chainHg19,521 chainHg19,536 chainMm10,521 chainMm10,536 chainNetHg19,524 chainNetHg19,539 chainNetMm10,524 chainNetMm10,539 nestedRepeats,143 netHg19,521 netHg19,536 netMm10,521 netMm10,536 sample augustusGene,133 sampling augustusGene,129 santa chainHg19,956 chainHg19,1001 chainMm10,956 chainMm10,1001 chainNetHg19,959 chainNetHg19,1004 chainNetMm10,959 chainNetMm10,1004 netHg19,956 netHg19,1001 netMm10,956 netMm10,1001 satellite rmsk,184 save cpgIslandExt,582 cpgIslandExtUnmasked,585 cpgIslandSuper,582 scaffold ensemblGeneScaffold,5 ensemblGeneScaffold,19 ensemblGeneScaffold,42 ensemblGeneScaffold,55 gold,50 gold,70 gold,108 scaffolds ensemblGeneScaffold,27 ensemblGeneScaffold,58 gold,33 sch windowmaskerSdust,94 schwartz chainHg19,923 chainHg19,1080 chainMm10,923 chainMm10,1080 chainNetHg19,926 chainNetHg19,1083 chainNetMm10,926 chainNetMm10,1083 netHg19,923 netHg19,1080 netMm10,923 netMm10,1080 sci chainHg19,1066 chainMm10,1066 chainNetHg19,1069 chainNetMm10,1069 netHg19,1066 netMm10,1066 science genscan,203 scientists xenoRefGene,290 score chainHg19,677 chainMm10,677 chainNetHg19,680 chainNetMm10,680 nestedRepeats,188 nestedRepeats,216 nestedRepeats,223 netHg19,677 netMm10,677 quality,19 scores quality,2 quality,6 quality,13 quality,52 quality,87 scoring chainHg19,77 chainHg19,87 chainHg19,656 chainHg19,673 chainHg19,1028 chainMm10,77 chainMm10,87 chainMm10,656 chainMm10,673 chainMm10,1028 chainNetHg19,80 chainNetHg19,90 chainNetHg19,659 chainNetHg19,676 chainNetHg19,1031 chainNetMm10,80 chainNetMm10,90 chainNetMm10,659 chainNetMm10,676 chainNetMm10,1031 cpgIslandExt,238 cpgIslandExt,251 cpgIslandExtUnmasked,241 cpgIslandExtUnmasked,254 cpgIslandSuper,238 cpgIslandSuper,251 netHg19,77 netHg19,87 netHg19,656 netHg19,673 netHg19,1028 netMm10,77 netMm10,87 netMm10,656 netMm10,673 netMm10,1028 scott chainHg19,922 chainMm10,922 chainNetHg19,925 chainNetMm10,925 netHg19,922 netMm10,922 screens nestedRepeats,32 rmsk,22 scrna rmsk,193 sdust windowmaskerSdust,2 windowmaskerSdust,8 windowmaskerSdust,68 searching cpgIslandExt,230 cpgIslandExtUnmasked,233 cpgIslandSuper,230 searls genscan,191 section ensGene,53 ensemblGeneScaffold,96 genscan,153 nestedRepeats,67 rmsk,103 sections chainHg19,803 chainMm10,803 chainNetHg19,806 chainNetMm10,806 netHg19,803 netMm10,803 see augustusGene,42 ensGene,25 ensGene,161 genscan,57 microsat,101 nestedRepeats,296 nestedRepeats,370 rmsk,319 rmsk,393 simpleRepeat,63 xenoRefGene,207 segment cpgIslandExt,254 cpgIslandExt,299 cpgIslandExtUnmasked,257 cpgIslandExtUnmasked,302 cpgIslandSuper,254 cpgIslandSuper,299 segments cpgIslandExt,252 cpgIslandExtUnmasked,255 cpgIslandSuper,252 ensemblGeneScaffold,38 select genscan,90 xenoRefGene,160 selecting microsat,60 selective cpgIslandExt,122 cpgIslandExtUnmasked,125 cpgIslandSuper,122 semi-markov augustusGene,117 sep chainHg19,1071 chainMm10,1071 chainNetHg19,1074 chainNetMm10,1074 nestedRepeats,356 netHg19,1071 netMm10,1071 rmsk,379 seq_region.txt ensemblGeneScaffold,75 sequence augustusGene,32 augustusGene,70 chainHg19,166 chainHg19,292 chainHg19,1031 chainMm10,166 chainMm10,292 chainMm10,1031 chainNetHg19,169 chainNetHg19,295 chainNetHg19,1034 chainNetMm10,169 chainNetMm10,295 chainNetMm10,1034 cpgIslandExt,232 cpgIslandExt,303 cpgIslandExt,325 cpgIslandExt,329 cpgIslandExt,397 cpgIslandExt,410 cpgIslandExtUnmasked,7 cpgIslandExtUnmasked,235 cpgIslandExtUnmasked,306 cpgIslandExtUnmasked,328 cpgIslandExtUnmasked,332 cpgIslandExtUnmasked,400 cpgIslandExtUnmasked,413 cpgIslandSuper,232 cpgIslandSuper,303 cpgIslandSuper,325 cpgIslandSuper,329 cpgIslandSuper,397 cpgIslandSuper,410 gap,103 netHg19,166 netHg19,292 netHg19,1031 netMm10,166 netMm10,292 netMm10,1031 rmsk,48 rmsk,62 windowmaskerSdust,17 xenoRefGene,274 xenoRefGene,286 xenoRefGene,367 xenoRefGene,372 sequenced windowmaskerSdust,104 sequences microsat,26 microsat,124 nestedRepeats,34 nestedRepeats,42 rmsk,24 rmsk,32 simpleRepeat,84 xenoRefGene,30 xenoRefGene,345 sequencing chainHg19,885 chainMm10,885 chainNetHg19,888 chainNetMm10,888 cytoBandIdeo,9 ensemblGeneScaffold,9 gap,6 gc5BaseBw,10 gold,7 netHg19,885 netMm10,885 quality,4 quality,9 quality,17 server ensGene,144 servers cpgIslandExt,539 cpgIslandExtUnmasked,542 cpgIslandSuper,539 ensGene,116 set gap,100 sets augustusGene,158 settings cpgIslandExt,213 cpgIslandExtUnmasked,216 cpgIslandSuper,213 shade nestedRepeats,194 shaded nestedRepeats,182 shades nestedRepeats,202 shading nestedRepeats,240 rmsk,208 rmsk,239 xenoRefGene,57 short rmsk,153 shotgun gold,20 gold,139 show xenoRefGene,123 shown chainHg19,41 chainHg19,54 chainMm10,41 chainMm10,54 chainNetHg19,44 chainNetHg19,57 chainNetMm10,44 chainNetMm10,57 gold,91 microsat,48 netHg19,41 netHg19,54 netMm10,41 netMm10,54 shows augustusGene,15 augustusGene,108 chainHg19,15 chainHg19,62 chainHg19,263 chainMm10,15 chainMm10,62 chainMm10,263 chainNetHg19,18 chainNetHg19,65 chainNetHg19,266 chainNetMm10,18 chainNetMm10,65 chainNetMm10,266 ensemblGeneScaffold,13 gc5BaseBw,16 genscan,13 gold,11 nestedRepeats,17 nestedRepeats,81 netHg19,15 netHg19,62 netHg19,263 netMm10,15 netMm10,62 netMm10,263 quality,15 xenoRefGene,13 side gap,51 signal augustusGene,48 augustusGene,63 signals genscan,34 genscan,187 significantly cpgIslandExt,156 cpgIslandExtUnmasked,159 cpgIslandSuper,156 signifies rmsk,258 similar nestedRepeats,199 simple microsat,57 microsat,85 rmsk,178 simpleRepeat,1 simpleRepeat,3 simpleRepeat,15 simultaneously chainHg19,99 chainMm10,99 chainNetHg19,102 chainNetMm10,102 netHg19,99 netMm10,99 since chainHg19,570 chainMm10,570 chainNetHg19,573 chainNetMm10,573 netHg19,570 netMm10,570 sine rmsk,157 single chainHg19,126 chainHg19,135 chainHg19,619 chainHg19,624 chainMm10,126 chainMm10,135 chainMm10,619 chainMm10,624 chainNetHg19,129 chainNetHg19,138 chainNetHg19,622 chainNetHg19,627 chainNetMm10,129 chainNetMm10,138 chainNetMm10,622 chainNetMm10,627 nestedRepeats,178 netHg19,126 netHg19,135 netHg19,619 netHg19,624 netMm10,126 netMm10,135 netMm10,619 netMm10,624 xenoRefGene,238 single-lined chainHg19,206 chainMm10,206 chainNetHg19,209 chainNetMm10,209 netHg19,206 netMm10,206 site genscan,157 windowmaskerSdust,45 sites augustusGene,54 augustusGene,59 cpgIslandExt,34 cpgIslandExtUnmasked,37 cpgIslandSuper,34 sizes gold,45 sm xenoRefGene,322 smallsize chainHg19,703 chainMm10,703 chainNetHg19,706 chainNetMm10,706 netHg19,703 netMm10,703 smit chainHg19,940 chainHg19,1084 chainMm10,940 chainMm10,1084 chainNetHg19,943 chainNetHg19,1087 chainNetMm10,943 chainNetMm10,1087 nestedRepeats,306 nestedRepeats,324 nestedRepeats,371 nestedRepeats,395 netHg19,940 netHg19,1084 netMm10,940 netMm10,1084 rmsk,17 rmsk,329 rmsk,347 rmsk,394 rmsk,418 snrna rmsk,192 so chainHg19,434 chainMm10,434 chainNetHg19,437 chainNetMm10,437 netHg19,434 netMm10,434 soft-masked rmsk,305 software nestedRepeats,255 some cpgIslandExt,134 cpgIslandExtUnmasked,137 cpgIslandSuper,134 nestedRepeats,207 rmsk,105 rmsk,268 sometimes simpleRepeat,50 sort cpgIslandExt,483 cpgIslandExtUnmasked,486 cpgIslandSuper,483 sorted chainHg19,772 chainMm10,772 chainNetHg19,775 chainNetMm10,775 netHg19,772 netMm10,772 source cpgIslandExt,555 cpgIslandExtUnmasked,558 cpgIslandSuper,555 windowmaskerSdust,33 spaces gold,89 span chainHg19,393 chainMm10,393 chainNetHg19,396 chainNetMm10,396 netHg19,393 netMm10,393 specialized simpleRepeat,29 species augustusGene,166 augustusGene,173 augustusGene,181 augustusGene,186 augustusGene,200 augustusGene,229 augustusGene,244 chainHg19,116 chainHg19,169 chainHg19,188 chainHg19,891 chainMm10,116 chainMm10,169 chainMm10,188 chainMm10,891 chainNetHg19,119 chainNetHg19,172 chainNetHg19,191 chainNetHg19,894 chainNetMm10,119 chainNetMm10,172 chainNetMm10,191 chainNetMm10,894 netHg19,116 netHg19,169 netHg19,188 netHg19,891 netMm10,116 netMm10,169 netMm10,188 netMm10,891 species-specific augustusGene,156 specific simpleRepeat,53 splice augustusGene,53 genscan,156 splicing augustusGene,123 genscan,33 genscan,186 split chainHg19,574 chainMm10,574 chainNetHg19,577 chainNetMm10,577 netHg19,574 netMm10,574 spontaneous cpgIslandExt,109 cpgIslandExtUnmasked,112 cpgIslandSuper,109 squish nestedRepeats,159 src cpgIslandExt,564 cpgIslandExtUnmasked,567 cpgIslandSuper,564 srprna rmsk,194 stages cpgIslandExt,90 cpgIslandExtUnmasked,93 cpgIslandSuper,90 stanke augustusGene,103 augustusGene,251 augustusGene,284 augustusGene,286 augustusGene,316 start augustusGene,58 cpgIslandExt,33 cpgIslandExtUnmasked,36 cpgIslandSuper,33 state chainHg19,917 chainHg19,1020 chainMm10,917 chainMm10,1020 chainNetHg19,920 chainNetHg19,1023 chainNetMm10,920 chainNetMm10,1023 netHg19,917 netHg19,1020 netMm10,917 netMm10,1020 statistical augustusGene,47 stdin cpgIslandExt,415 cpgIslandExt,420 cpgIslandExtUnmasked,418 cpgIslandExtUnmasked,423 cpgIslandSuper,415 cpgIslandSuper,420 stdout cpgIslandExt,413 cpgIslandExt,417 cpgIslandExtUnmasked,416 cpgIslandExtUnmasked,420 cpgIslandSuper,413 cpgIslandSuper,417 stefanie augustusGene,267 storage chainHg19,974 chainMm10,974 chainNetHg19,977 chainNetMm10,977 netHg19,974 netMm10,974 strand chainHg19,246 chainMm10,246 chainNetHg19,249 chainNetMm10,249 cpgIslandExt,80 cpgIslandExt,84 cpgIslandExtUnmasked,83 cpgIslandExtUnmasked,87 cpgIslandSuper,80 cpgIslandSuper,84 nestedRepeats,144 nestedRepeats,155 netHg19,246 netMm10,246 structure augustusGene,113 structures augustusGene,164 genscan,215 studying chainHg19,287 chainMm10,287 chainNetHg19,290 chainNetMm10,290 netHg19,287 netMm10,287 submodel augustusGene,331 subsections chainHg19,638 chainMm10,638 chainNetHg19,641 chainNetMm10,641 netHg19,638 netMm10,638 subset microsat,54 substantial chainHg19,165 chainMm10,165 chainNetHg19,168 chainNetMm10,168 netHg19,165 netMm10,165 subtracks chainHg19,29 chainHg19,36 chainMm10,29 chainMm10,36 chainNetHg19,32 chainNetHg19,39 chainNetMm10,32 chainNetMm10,39 netHg19,29 netHg19,36 netMm10,29 netMm10,36 such chainHg19,852 chainMm10,852 chainNetHg19,855 chainNetMm10,855 cpgIslandExt,65 cpgIslandExtUnmasked,68 cpgIslandSuper,65 netHg19,852 netMm10,852 supercontigs gold,38 suppl augustusGene,336 symp chainHg19,1034 chainMm10,1034 chainNetHg19,1037 chainNetMm10,1037 netHg19,1034 netMm10,1034 syn chainHg19,517 chainMm10,517 chainNetHg19,520 chainNetMm10,520 netHg19,517 netMm10,517 syntenic chainHg19,281 chainHg19,859 chainMm10,281 chainMm10,859 chainNetHg19,284 chainNetHg19,862 chainNetMm10,284 chainNetMm10,862 netHg19,281 netHg19,859 netMm10,281 netMm10,859 syntenically augustusGene,297 synteny chainHg19,32 chainMm10,32 chainNetHg19,35 chainNetMm10,35 netHg19,32 netMm10,32 synthesized cpgIslandExt,78 cpgIslandExtUnmasked,81 cpgIslandSuper,78 system chainHg19,78 chainMm10,78 chainNetHg19,81 chainNetMm10,81 netHg19,78 netMm10,78 systems chainHg19,88 chainMm10,88 chainNetHg19,91 chainNetMm10,91 netHg19,88 netMm10,88 t cpgIslandExt,437 cpgIslandExt,439 cpgIslandExt,441 cpgIslandExt,444 cpgIslandExt,446 cpgIslandExt,448 cpgIslandExt,450 cpgIslandExt,452 cpgIslandExt,454 cpgIslandExtUnmasked,440 cpgIslandExtUnmasked,442 cpgIslandExtUnmasked,444 cpgIslandExtUnmasked,447 cpgIslandExtUnmasked,449 cpgIslandExtUnmasked,451 cpgIslandExtUnmasked,453 cpgIslandExtUnmasked,455 cpgIslandExtUnmasked,457 cpgIslandSuper,437 cpgIslandSuper,439 cpgIslandSuper,441 cpgIslandSuper,444 cpgIslandSuper,446 cpgIslandSuper,448 cpgIslandSuper,450 cpgIslandSuper,452 cpgIslandSuper,454 ensGene,169 ensGene,181 ensGene,187 ensemblGeneScaffold,108 ensemblGeneScaffold,120 ensemblGeneScaffold,126 xenoRefGene,362 t-123-31-11491 chainHg19,671 chainMm10,671 chainNetHg19,674 chainNetMm10,674 netHg19,671 netMm10,671 table augustusGene,225 cpgIslandExt,521 cpgIslandExtUnmasked,524 cpgIslandSuper,521 ensGene,66 windowmaskerSdust,85 tables cpgIslandExt,511 cpgIslandExt,529 cpgIslandExtUnmasked,514 cpgIslandExtUnmasked,532 cpgIslandSuper,511 cpgIslandSuper,529 ensemblGeneScaffold,72 tablesize chainHg19,701 chainMm10,701 chainNetHg19,704 chainNetMm10,704 netHg19,701 netMm10,701 taken xenoRefGene,24 tandem microsat,92 microsat,105 microsat,116 simpleRepeat,4 simpleRepeat,16 simpleRepeat,23 simpleRepeat,76 tatusova xenoRefGene,361 temperature augustusGene,141 ten rmsk,148 tend cpgIslandExt,68 cpgIslandExt,102 cpgIslandExtUnmasked,71 cpgIslandExtUnmasked,105 cpgIslandSuper,68 cpgIslandSuper,102 microsat,37 tenrec chainHg19,72 chainHg19,98 chainHg19,155 chainHg19,201 chainHg19,267 chainHg19,274 chainHg19,573 chainHg19,625 chainMm10,72 chainMm10,98 chainMm10,155 chainMm10,201 chainMm10,267 chainMm10,274 chainMm10,573 chainMm10,625 chainNetHg19,75 chainNetHg19,101 chainNetHg19,158 chainNetHg19,204 chainNetHg19,270 chainNetHg19,277 chainNetHg19,576 chainNetHg19,628 chainNetMm10,75 chainNetMm10,101 chainNetMm10,158 chainNetMm10,204 chainNetMm10,270 chainNetMm10,277 chainNetMm10,576 chainNetMm10,628 gold,17 netHg19,72 netHg19,98 netHg19,155 netHg19,201 netHg19,267 netHg19,274 netHg19,573 netHg19,625 netMm10,72 netMm10,98 netMm10,155 netMm10,201 netMm10,267 netMm10,274 netMm10,573 netMm10,625 quality,3 quality,94 xenoRefGene,23 xenoRefGene,222 terminal rmsk,167 tgap chainHg19,729 chainMm10,729 chainNetHg19,732 chainNetMm10,732 netHg19,729 netMm10,729 than chainHg19,83 chainHg19,506 chainMm10,83 chainMm10,506 chainNetHg19,86 chainNetHg19,509 chainNetMm10,86 chainNetMm10,509 cpgIslandExt,159 cpgIslandExt,270 cpgIslandExt,275 cpgIslandExtUnmasked,162 cpgIslandExtUnmasked,273 cpgIslandExtUnmasked,278 cpgIslandSuper,159 cpgIslandSuper,270 cpgIslandSuper,275 nestedRepeats,213 nestedRepeats,271 netHg19,83 netHg19,506 netMm10,83 netMm10,506 xenoRefGene,22 xenoRefGene,232 thank ensGene,150 thanks augustusGene,248 ensemblGeneScaffold,99 genscan,170 nestedRepeats,303 rmsk,326 that chainHg19,20 chainHg19,45 chainHg19,79 chainHg19,139 chainHg19,163 chainHg19,365 chainHg19,392 chainHg19,414 chainHg19,566 chainHg19,822 chainHg19,833 chainMm10,20 chainMm10,45 chainMm10,79 chainMm10,139 chainMm10,163 chainMm10,365 chainMm10,392 chainMm10,414 chainMm10,566 chainMm10,822 chainMm10,833 chainNetHg19,23 chainNetHg19,48 chainNetHg19,82 chainNetHg19,142 chainNetHg19,166 chainNetHg19,368 chainNetHg19,395 chainNetHg19,417 chainNetHg19,569 chainNetHg19,825 chainNetHg19,836 chainNetMm10,23 chainNetMm10,48 chainNetMm10,82 chainNetMm10,142 chainNetMm10,166 chainNetMm10,368 chainNetMm10,395 chainNetMm10,417 chainNetMm10,569 chainNetMm10,825 chainNetMm10,836 cpgIslandExt,114 cpgIslandExt,178 cpgIslandExtUnmasked,117 cpgIslandExtUnmasked,181 cpgIslandSuper,114 cpgIslandSuper,178 ensemblGeneScaffold,43 genscan,141 gold,65 microsat,15 nestedRepeats,265 nestedRepeats,273 netHg19,20 netHg19,45 netHg19,79 netHg19,139 netHg19,163 netHg19,365 netHg19,392 netHg19,414 netHg19,566 netHg19,822 netHg19,833 netMm10,20 netMm10,45 netMm10,79 netMm10,139 netMm10,163 netMm10,365 netMm10,392 netMm10,414 netMm10,566 netMm10,822 netMm10,833 rmsk,42 rmsk,259 xenoRefGene,146 the augustusGene,20 augustusGene,25 augustusGene,30 augustusGene,38 augustusGene,61 augustusGene,69 augustusGene,81 augustusGene,109 augustusGene,143 augustusGene,165 augustusGene,172 augustusGene,177 augustusGene,185 augustusGene,240 augustusGene,250 augustusGene,255 augustusGene,258 augustusGene,261 augustusGene,272 augustusGene,275 chainHg19,18 chainHg19,37 chainHg19,59 chainHg19,71 chainHg19,117 chainHg19,130 chainHg19,147 chainHg19,154 chainHg19,200 chainHg19,203 chainHg19,229 chainHg19,239 chainHg19,244 chainHg19,252 chainHg19,260 chainHg19,264 chainHg19,273 chainHg19,290 chainHg19,299 chainHg19,313 chainHg19,328 chainHg19,334 chainHg19,337 chainHg19,352 chainHg19,358 chainHg19,362 chainHg19,382 chainHg19,388 chainHg19,402 chainHg19,420 chainHg19,437 chainHg19,440 chainHg19,445 chainHg19,458 chainHg19,471 chainHg19,473 chainHg19,480 chainHg19,483 chainHg19,490 chainHg19,496 chainHg19,509 chainHg19,520 chainHg19,524 chainHg19,527 chainHg19,535 chainHg19,539 chainHg19,545 chainHg19,556 chainHg19,559 chainHg19,571 chainHg19,578 chainHg19,580 chainHg19,588 chainHg19,594 chainHg19,603 chainHg19,606 chainHg19,636 chainHg19,641 chainHg19,650 chainHg19,654 chainHg19,661 chainHg19,684 chainHg19,692 chainHg19,762 chainHg19,766 chainHg19,774 chainHg19,778 chainHg19,782 chainHg19,790 chainHg19,835 chainHg19,845 chainHg19,864 chainHg19,867 chainHg19,879 chainHg19,903 chainHg19,945 chainHg19,951 chainHg19,969 chainHg19,976 chainHg19,988 chainHg19,997 chainHg19,1018 chainHg19,1058 chainMm10,18 chainMm10,37 chainMm10,59 chainMm10,71 chainMm10,117 chainMm10,130 chainMm10,147 chainMm10,154 chainMm10,200 chainMm10,203 chainMm10,229 chainMm10,239 chainMm10,244 chainMm10,252 chainMm10,260 chainMm10,264 chainMm10,273 chainMm10,290 chainMm10,299 chainMm10,313 chainMm10,328 chainMm10,334 chainMm10,337 chainMm10,352 chainMm10,358 chainMm10,362 chainMm10,382 chainMm10,388 chainMm10,402 chainMm10,420 chainMm10,437 chainMm10,440 chainMm10,445 chainMm10,458 chainMm10,471 chainMm10,473 chainMm10,480 chainMm10,483 chainMm10,490 chainMm10,496 chainMm10,509 chainMm10,520 chainMm10,524 chainMm10,527 chainMm10,535 chainMm10,539 chainMm10,545 chainMm10,556 chainMm10,559 chainMm10,571 chainMm10,578 chainMm10,580 chainMm10,588 chainMm10,594 chainMm10,603 chainMm10,606 chainMm10,636 chainMm10,641 chainMm10,650 chainMm10,654 chainMm10,661 chainMm10,684 chainMm10,692 chainMm10,762 chainMm10,766 chainMm10,774 chainMm10,778 chainMm10,782 chainMm10,790 chainMm10,835 chainMm10,845 chainMm10,864 chainMm10,867 chainMm10,879 chainMm10,903 chainMm10,945 chainMm10,951 chainMm10,969 chainMm10,976 chainMm10,988 chainMm10,997 chainMm10,1018 chainMm10,1058 chainNetHg19,21 chainNetHg19,40 chainNetHg19,62 chainNetHg19,74 chainNetHg19,120 chainNetHg19,133 chainNetHg19,150 chainNetHg19,157 chainNetHg19,203 chainNetHg19,206 chainNetHg19,232 chainNetHg19,242 chainNetHg19,247 chainNetHg19,255 chainNetHg19,263 chainNetHg19,267 chainNetHg19,276 chainNetHg19,293 chainNetHg19,302 chainNetHg19,316 chainNetHg19,331 chainNetHg19,337 chainNetHg19,340 chainNetHg19,355 chainNetHg19,361 chainNetHg19,365 chainNetHg19,385 chainNetHg19,391 chainNetHg19,405 chainNetHg19,423 chainNetHg19,440 chainNetHg19,443 chainNetHg19,448 chainNetHg19,461 chainNetHg19,474 chainNetHg19,476 chainNetHg19,483 chainNetHg19,486 chainNetHg19,493 chainNetHg19,499 chainNetHg19,512 chainNetHg19,523 chainNetHg19,527 chainNetHg19,530 chainNetHg19,538 chainNetHg19,542 chainNetHg19,548 chainNetHg19,559 chainNetHg19,562 chainNetHg19,574 chainNetHg19,581 chainNetHg19,583 chainNetHg19,591 chainNetHg19,597 chainNetHg19,606 chainNetHg19,609 chainNetHg19,639 chainNetHg19,644 chainNetHg19,653 chainNetHg19,657 chainNetHg19,664 chainNetHg19,687 chainNetHg19,695 chainNetHg19,765 chainNetHg19,769 chainNetHg19,777 chainNetHg19,781 chainNetHg19,785 chainNetHg19,793 chainNetHg19,838 chainNetHg19,848 chainNetHg19,867 chainNetHg19,870 chainNetHg19,882 chainNetHg19,906 chainNetHg19,948 chainNetHg19,954 chainNetHg19,972 chainNetHg19,979 chainNetHg19,991 chainNetHg19,1000 chainNetHg19,1021 chainNetHg19,1061 chainNetMm10,21 chainNetMm10,40 chainNetMm10,62 chainNetMm10,74 chainNetMm10,120 chainNetMm10,133 chainNetMm10,150 chainNetMm10,157 chainNetMm10,203 chainNetMm10,206 chainNetMm10,232 chainNetMm10,242 chainNetMm10,247 chainNetMm10,255 chainNetMm10,263 chainNetMm10,267 chainNetMm10,276 chainNetMm10,293 chainNetMm10,302 chainNetMm10,316 chainNetMm10,331 chainNetMm10,337 chainNetMm10,340 chainNetMm10,355 chainNetMm10,361 chainNetMm10,365 chainNetMm10,385 chainNetMm10,391 chainNetMm10,405 chainNetMm10,423 chainNetMm10,440 chainNetMm10,443 chainNetMm10,448 chainNetMm10,461 chainNetMm10,474 chainNetMm10,476 chainNetMm10,483 chainNetMm10,486 chainNetMm10,493 chainNetMm10,499 chainNetMm10,512 chainNetMm10,523 chainNetMm10,527 chainNetMm10,530 chainNetMm10,538 chainNetMm10,542 chainNetMm10,548 chainNetMm10,559 chainNetMm10,562 chainNetMm10,574 chainNetMm10,581 chainNetMm10,583 chainNetMm10,591 chainNetMm10,597 chainNetMm10,606 chainNetMm10,609 chainNetMm10,639 chainNetMm10,644 chainNetMm10,653 chainNetMm10,657 chainNetMm10,664 chainNetMm10,687 chainNetMm10,695 chainNetMm10,765 chainNetMm10,769 chainNetMm10,777 chainNetMm10,781 chainNetMm10,785 chainNetMm10,793 chainNetMm10,838 chainNetMm10,848 chainNetMm10,867 chainNetMm10,870 chainNetMm10,882 chainNetMm10,906 chainNetMm10,948 chainNetMm10,954 chainNetMm10,972 chainNetMm10,979 chainNetMm10,991 chainNetMm10,1000 chainNetMm10,1021 chainNetMm10,1061 cpgIslandExt,62 cpgIslandExt,76 cpgIslandExt,82 cpgIslandExt,88 cpgIslandExt,111 cpgIslandExt,142 cpgIslandExt,163 cpgIslandExt,168 cpgIslandExt,172 cpgIslandExt,190 cpgIslandExt,197 cpgIslandExt,201 cpgIslandExt,207 cpgIslandExt,211 cpgIslandExt,215 cpgIslandExt,219 cpgIslandExt,231 cpgIslandExt,259 cpgIslandExt,284 cpgIslandExt,288 cpgIslandExt,291 cpgIslandExt,298 cpgIslandExt,300 cpgIslandExt,310 cpgIslandExt,313 cpgIslandExt,317 cpgIslandExt,324 cpgIslandExt,332 cpgIslandExt,336 cpgIslandExt,342 cpgIslandExt,344 cpgIslandExt,348 cpgIslandExt,355 cpgIslandExt,359 cpgIslandExt,361 cpgIslandExt,372 cpgIslandExt,398 cpgIslandExt,401 cpgIslandExt,407 cpgIslandExt,490 cpgIslandExt,501 cpgIslandExt,517 cpgIslandExt,520 cpgIslandExt,524 cpgIslandExt,528 cpgIslandExt,554 cpgIslandExt,557 cpgIslandExt,567 cpgIslandExtUnmasked,65 cpgIslandExtUnmasked,79 cpgIslandExtUnmasked,85 cpgIslandExtUnmasked,91 cpgIslandExtUnmasked,114 cpgIslandExtUnmasked,145 cpgIslandExtUnmasked,166 cpgIslandExtUnmasked,171 cpgIslandExtUnmasked,175 cpgIslandExtUnmasked,193 cpgIslandExtUnmasked,200 cpgIslandExtUnmasked,204 cpgIslandExtUnmasked,210 cpgIslandExtUnmasked,214 cpgIslandExtUnmasked,218 cpgIslandExtUnmasked,222 cpgIslandExtUnmasked,234 cpgIslandExtUnmasked,262 cpgIslandExtUnmasked,287 cpgIslandExtUnmasked,291 cpgIslandExtUnmasked,294 cpgIslandExtUnmasked,301 cpgIslandExtUnmasked,303 cpgIslandExtUnmasked,313 cpgIslandExtUnmasked,316 cpgIslandExtUnmasked,320 cpgIslandExtUnmasked,327 cpgIslandExtUnmasked,335 cpgIslandExtUnmasked,339 cpgIslandExtUnmasked,345 cpgIslandExtUnmasked,347 cpgIslandExtUnmasked,351 cpgIslandExtUnmasked,358 cpgIslandExtUnmasked,362 cpgIslandExtUnmasked,364 cpgIslandExtUnmasked,375 cpgIslandExtUnmasked,401 cpgIslandExtUnmasked,404 cpgIslandExtUnmasked,410 cpgIslandExtUnmasked,493 cpgIslandExtUnmasked,504 cpgIslandExtUnmasked,520 cpgIslandExtUnmasked,523 cpgIslandExtUnmasked,527 cpgIslandExtUnmasked,531 cpgIslandExtUnmasked,557 cpgIslandExtUnmasked,560 cpgIslandExtUnmasked,570 cpgIslandSuper,62 cpgIslandSuper,76 cpgIslandSuper,82 cpgIslandSuper,88 cpgIslandSuper,111 cpgIslandSuper,142 cpgIslandSuper,163 cpgIslandSuper,168 cpgIslandSuper,172 cpgIslandSuper,190 cpgIslandSuper,197 cpgIslandSuper,201 cpgIslandSuper,207 cpgIslandSuper,211 cpgIslandSuper,215 cpgIslandSuper,219 cpgIslandSuper,231 cpgIslandSuper,259 cpgIslandSuper,284 cpgIslandSuper,288 cpgIslandSuper,291 cpgIslandSuper,298 cpgIslandSuper,300 cpgIslandSuper,310 cpgIslandSuper,313 cpgIslandSuper,317 cpgIslandSuper,324 cpgIslandSuper,332 cpgIslandSuper,336 cpgIslandSuper,342 cpgIslandSuper,344 cpgIslandSuper,348 cpgIslandSuper,355 cpgIslandSuper,359 cpgIslandSuper,361 cpgIslandSuper,372 cpgIslandSuper,398 cpgIslandSuper,401 cpgIslandSuper,407 cpgIslandSuper,490 cpgIslandSuper,501 cpgIslandSuper,517 cpgIslandSuper,520 cpgIslandSuper,524 cpgIslandSuper,528 cpgIslandSuper,554 cpgIslandSuper,557 cpgIslandSuper,567 ensGene,21 ensGene,34 ensGene,51 ensGene,65 ensGene,69 ensGene,75 ensGene,101 ensGene,107 ensGene,190 ensemblGeneScaffold,14 ensemblGeneScaffold,22 ensemblGeneScaffold,40 ensemblGeneScaffold,51 ensemblGeneScaffold,69 ensemblGeneScaffold,80 ensemblGeneScaffold,94 ensemblGeneScaffold,129 gap,13 gap,18 gap,28 gap,41 gap,47 gap,53 gap,69 gap,73 gap,78 gap,87 gc5BaseBw,12 gc5BaseBw,17 gc5BaseBw,53 gc5BaseBw,57 gc5BaseBw,68 gc5BaseBw,72 genscan,16 genscan,23 genscan,38 genscan,53 genscan,68 genscan,75 genscan,80 genscan,91 genscan,115 genscan,135 genscan,139 genscan,151 genscan,155 genscan,176 gold,12 gold,16 gold,40 gold,63 gold,68 gold,76 gold,93 gold,98 gold,104 gold,118 gold,123 microsat,43 microsat,46 microsat,56 microsat,82 microsat,84 microsat,91 nestedRepeats,25 nestedRepeats,28 nestedRepeats,44 nestedRepeats,51 nestedRepeats,65 nestedRepeats,69 nestedRepeats,76 nestedRepeats,100 nestedRepeats,105 nestedRepeats,134 nestedRepeats,142 nestedRepeats,149 nestedRepeats,154 nestedRepeats,185 nestedRepeats,193 nestedRepeats,201 nestedRepeats,215 nestedRepeats,220 nestedRepeats,235 nestedRepeats,242 nestedRepeats,248 nestedRepeats,253 nestedRepeats,278 nestedRepeats,284 nestedRepeats,297 nestedRepeats,313 nestedRepeats,397 nestedRepeats,403 netHg19,18 netHg19,37 netHg19,59 netHg19,71 netHg19,117 netHg19,130 netHg19,147 netHg19,154 netHg19,200 netHg19,203 netHg19,229 netHg19,239 netHg19,244 netHg19,252 netHg19,260 netHg19,264 netHg19,273 netHg19,290 netHg19,299 netHg19,313 netHg19,328 netHg19,334 netHg19,337 netHg19,352 netHg19,358 netHg19,362 netHg19,382 netHg19,388 netHg19,402 netHg19,420 netHg19,437 netHg19,440 netHg19,445 netHg19,458 netHg19,471 netHg19,473 netHg19,480 netHg19,483 netHg19,490 netHg19,496 netHg19,509 netHg19,520 netHg19,524 netHg19,527 netHg19,535 netHg19,539 netHg19,545 netHg19,556 netHg19,559 netHg19,571 netHg19,578 netHg19,580 netHg19,588 netHg19,594 netHg19,603 netHg19,606 netHg19,636 netHg19,641 netHg19,650 netHg19,654 netHg19,661 netHg19,684 netHg19,692 netHg19,762 netHg19,766 netHg19,774 netHg19,778 netHg19,782 netHg19,790 netHg19,835 netHg19,845 netHg19,864 netHg19,867 netHg19,879 netHg19,903 netHg19,945 netHg19,951 netHg19,969 netHg19,976 netHg19,988 netHg19,997 netHg19,1018 netHg19,1058 netMm10,18 netMm10,37 netMm10,59 netMm10,71 netMm10,117 netMm10,130 netMm10,147 netMm10,154 netMm10,200 netMm10,203 netMm10,229 netMm10,239 netMm10,244 netMm10,252 netMm10,260 netMm10,264 netMm10,273 netMm10,290 netMm10,299 netMm10,313 netMm10,328 netMm10,334 netMm10,337 netMm10,352 netMm10,358 netMm10,362 netMm10,382 netMm10,388 netMm10,402 netMm10,420 netMm10,437 netMm10,440 netMm10,445 netMm10,458 netMm10,471 netMm10,473 netMm10,480 netMm10,483 netMm10,490 netMm10,496 netMm10,509 netMm10,520 netMm10,524 netMm10,527 netMm10,535 netMm10,539 netMm10,545 netMm10,556 netMm10,559 netMm10,571 netMm10,578 netMm10,580 netMm10,588 netMm10,594 netMm10,603 netMm10,606 netMm10,636 netMm10,641 netMm10,650 netMm10,654 netMm10,661 netMm10,684 netMm10,692 netMm10,762 netMm10,766 netMm10,774 netMm10,778 netMm10,782 netMm10,790 netMm10,835 netMm10,845 netMm10,864 netMm10,867 netMm10,879 netMm10,903 netMm10,945 netMm10,951 netMm10,969 netMm10,976 netMm10,988 netMm10,997 netMm10,1018 netMm10,1058 quality,11 quality,16 quality,24 quality,26 quality,32 quality,35 quality,38 quality,47 quality,50 quality,68 quality,72 quality,81 quality,85 quality,93 quality,96 rmsk,33 rmsk,40 rmsk,46 rmsk,60 rmsk,66 rmsk,75 rmsk,80 rmsk,87 rmsk,101 rmsk,118 rmsk,204 rmsk,210 rmsk,214 rmsk,229 rmsk,231 rmsk,236 rmsk,238 rmsk,244 rmsk,247 rmsk,260 rmsk,265 rmsk,271 rmsk,274 rmsk,281 rmsk,291 rmsk,320 rmsk,336 rmsk,420 rmsk,426 simpleRepeat,60 windowmaskerSdust,22 windowmaskerSdust,28 windowmaskerSdust,32 windowmaskerSdust,36 windowmaskerSdust,42 windowmaskerSdust,55 windowmaskerSdust,74 windowmaskerSdust,81 xenoRefGene,26 xenoRefGene,33 xenoRefGene,48 xenoRefGene,55 xenoRefGene,59 xenoRefGene,63 xenoRefGene,74 xenoRefGene,89 xenoRefGene,92 xenoRefGene,95 xenoRefGene,109 xenoRefGene,115 xenoRefGene,120 xenoRefGene,125 xenoRefGene,133 xenoRefGene,161 xenoRefGene,166 xenoRefGene,181 xenoRefGene,196 xenoRefGene,209 xenoRefGene,216 xenoRefGene,221 xenoRefGene,244 xenoRefGene,247 xenoRefGene,263 xenoRefGene,272 xenoRefGene,295 their nestedRepeats,190 them chainHg19,797 chainMm10,797 chainNetHg19,800 chainNetMm10,800 cpgIslandExt,126 cpgIslandExtUnmasked,129 cpgIslandSuper,126 netHg19,797 netMm10,797 rmsk,318 then chainHg19,647 chainHg19,786 chainHg19,871 chainMm10,647 chainMm10,786 chainMm10,871 chainNetHg19,650 chainNetHg19,789 chainNetHg19,874 chainNetMm10,650 chainNetMm10,789 chainNetMm10,874 cpgIslandExt,256 cpgIslandExtUnmasked,259 cpgIslandSuper,256 nestedRepeats,232 netHg19,647 netHg19,786 netHg19,871 netMm10,647 netMm10,786 netMm10,871 there cpgIslandExt,120 cpgIslandExtUnmasked,123 cpgIslandSuper,120 therefore gold,112 these augustusGene,95 augustusGene,190 chainHg19,52 chainHg19,100 chainHg19,407 chainHg19,659 chainMm10,52 chainMm10,100 chainMm10,407 chainMm10,659 chainNetHg19,55 chainNetHg19,103 chainNetHg19,410 chainNetHg19,662 chainNetMm10,55 chainNetMm10,103 chainNetMm10,410 chainNetMm10,662 ensGene,10 ensGene,154 ensemblGeneScaffold,56 gap,15 microsat,24 nestedRepeats,262 nestedRepeats,266 netHg19,52 netHg19,100 netHg19,407 netHg19,659 netMm10,52 netMm10,100 netMm10,407 netMm10,659 rmsk,235 simpleRepeat,33 thesis chainHg19,1017 chainMm10,1017 chainNetHg19,1020 chainNetMm10,1020 netHg19,1017 netMm10,1017 they chainHg19,324 chainMm10,324 chainNetHg19,327 chainNetMm10,327 netHg19,324 netMm10,324 thibaud-nissen xenoRefGene,323 thick chainHg19,43 chainMm10,43 chainNetHg19,46 chainNetMm10,46 netHg19,43 netMm10,43 this augustusGene,13 augustusGene,106 augustusGene,224 chainHg19,13 chainHg19,170 chainHg19,295 chainHg19,394 chainHg19,690 chainHg19,812 chainMm10,13 chainMm10,170 chainMm10,295 chainMm10,394 chainMm10,690 chainMm10,812 chainNetHg19,16 chainNetHg19,173 chainNetHg19,298 chainNetHg19,397 chainNetHg19,693 chainNetHg19,815 chainNetMm10,16 chainNetMm10,173 chainNetMm10,298 chainNetMm10,397 chainNetMm10,693 chainNetMm10,815 cpgIslandExt,72 cpgIslandExt,222 cpgIslandExt,585 cpgIslandExtUnmasked,75 cpgIslandExtUnmasked,225 cpgIslandExtUnmasked,588 cpgIslandSuper,72 cpgIslandSuper,222 cpgIslandSuper,585 ensGene,119 ensGene,135 ensemblGeneScaffold,11 ensemblGeneScaffold,64 ensemblGeneScaffold,104 gap,8 gap,38 gap,75 gap,94 gc5BaseBw,38 gc5BaseBw,77 genscan,11 genscan,65 genscan,128 gold,9 gold,60 gold,128 microsat,11 microsat,50 microsat,99 nestedRepeats,15 nestedRepeats,79 nestedRepeats,321 netHg19,13 netHg19,170 netHg19,295 netHg19,394 netHg19,690 netHg19,812 netMm10,13 netMm10,170 netMm10,295 netMm10,394 netMm10,690 netMm10,812 quality,53 rmsk,10 rmsk,51 rmsk,143 rmsk,344 simpleRepeat,12 simpleRepeat,31 windowmaskerSdust,13 windowmaskerSdust,49 windowmaskerSdust,87 xenoRefGene,11 xenoRefGene,36 xenoRefGene,45 xenoRefGene,83 xenoRefGene,138 xenoRefGene,177 xenoRefGene,213 xenoRefGene,278 those microsat,62 nestedRepeats,272 xenoRefGene,226 thousands chainHg19,250 chainMm10,250 chainNetHg19,253 chainNetMm10,253 netHg19,250 netMm10,250 through gap,68 nestedRepeats,97 rmsk,309 xenoRefGene,88 time chainHg19,795 chainMm10,795 chainNetHg19,798 chainNetMm10,798 cpgIslandExt,99 cpgIslandExt,237 cpgIslandExtUnmasked,102 cpgIslandExtUnmasked,240 cpgIslandSuper,99 cpgIslandSuper,237 netHg19,795 netMm10,795 to augustusGene,115 augustusGene,170 augustusGene,249 augustusGene,301 chainHg19,23 chainHg19,70 chainHg19,143 chainHg19,211 chainHg19,223 chainHg19,315 chainHg19,326 chainHg19,331 chainHg19,343 chainHg19,349 chainHg19,372 chainHg19,453 chainHg19,467 chainHg19,551 chainHg19,652 chainHg19,788 chainHg19,800 chainHg19,840 chainHg19,863 chainHg19,873 chainMm10,23 chainMm10,70 chainMm10,143 chainMm10,211 chainMm10,223 chainMm10,315 chainMm10,326 chainMm10,331 chainMm10,343 chainMm10,349 chainMm10,372 chainMm10,453 chainMm10,467 chainMm10,551 chainMm10,652 chainMm10,788 chainMm10,800 chainMm10,840 chainMm10,863 chainMm10,873 chainNetHg19,26 chainNetHg19,73 chainNetHg19,146 chainNetHg19,214 chainNetHg19,226 chainNetHg19,318 chainNetHg19,329 chainNetHg19,334 chainNetHg19,346 chainNetHg19,352 chainNetHg19,375 chainNetHg19,456 chainNetHg19,470 chainNetHg19,554 chainNetHg19,655 chainNetHg19,791 chainNetHg19,803 chainNetHg19,843 chainNetHg19,866 chainNetHg19,876 chainNetMm10,26 chainNetMm10,73 chainNetMm10,146 chainNetMm10,214 chainNetMm10,226 chainNetMm10,318 chainNetMm10,329 chainNetMm10,334 chainNetMm10,346 chainNetMm10,352 chainNetMm10,375 chainNetMm10,456 chainNetMm10,470 chainNetMm10,554 chainNetMm10,655 chainNetMm10,791 chainNetMm10,803 chainNetMm10,843 chainNetMm10,866 chainNetMm10,876 cpgIslandExt,69 cpgIslandExt,103 cpgIslandExt,124 cpgIslandExt,139 cpgIslandExt,205 cpgIslandExt,283 cpgIslandExt,358 cpgIslandExt,365 cpgIslandExt,371 cpgIslandExtUnmasked,72 cpgIslandExtUnmasked,106 cpgIslandExtUnmasked,127 cpgIslandExtUnmasked,142 cpgIslandExtUnmasked,208 cpgIslandExtUnmasked,286 cpgIslandExtUnmasked,361 cpgIslandExtUnmasked,368 cpgIslandExtUnmasked,374 cpgIslandSuper,69 cpgIslandSuper,103 cpgIslandSuper,124 cpgIslandSuper,139 cpgIslandSuper,205 cpgIslandSuper,283 cpgIslandSuper,358 cpgIslandSuper,365 cpgIslandSuper,371 ensGene,43 ensGene,149 ensemblGeneScaffold,50 ensemblGeneScaffold,88 ensemblGeneScaffold,100 gc5BaseBw,48 genscan,95 genscan,105 genscan,114 genscan,145 genscan,171 gold,121 microsat,18 microsat,38 microsat,121 nestedRepeats,148 nestedRepeats,152 nestedRepeats,174 nestedRepeats,184 nestedRepeats,200 nestedRepeats,225 nestedRepeats,234 nestedRepeats,260 nestedRepeats,304 nestedRepeats,319 netHg19,23 netHg19,70 netHg19,143 netHg19,211 netHg19,223 netHg19,315 netHg19,326 netHg19,331 netHg19,343 netHg19,349 netHg19,372 netHg19,453 netHg19,467 netHg19,551 netHg19,652 netHg19,788 netHg19,800 netHg19,840 netHg19,863 netHg19,873 netMm10,23 netMm10,70 netMm10,143 netMm10,211 netMm10,223 netMm10,315 netMm10,326 netMm10,331 netMm10,343 netMm10,349 netMm10,372 netMm10,453 netMm10,467 netMm10,551 netMm10,652 netMm10,788 netMm10,800 netMm10,840 netMm10,863 netMm10,873 quality,43 quality,63 rmsk,147 rmsk,315 rmsk,327 rmsk,342 simpleRepeat,81 windowmaskerSdust,47 xenoRefGene,113 xenoRefGene,149 xenoRefGene,156 xenoRefGene,180 xenoRefGene,206 together chainHg19,123 chainMm10,123 chainNetHg19,126 chainNetMm10,126 netHg19,123 netMm10,123 tolerate chainHg19,92 chainMm10,92 chainNetHg19,95 chainNetMm10,95 netHg19,92 netMm10,92 tool windowmaskerSdust,24 xenoRefGene,305 toolkit windowmaskerSdust,31 windowmaskerSdust,38 tools nestedRepeats,314 rmsk,337 top chainHg19,508 chainMm10,508 chainNetHg19,511 chainNetMm10,511 cpgIslandExt,220 cpgIslandExtUnmasked,223 cpgIslandSuper,220 netHg19,508 netMm10,508 xenoRefGene,93 top-level chainHg19,383 chainHg19,403 chainMm10,383 chainMm10,403 chainNetHg19,386 chainNetHg19,406 chainNetMm10,386 chainNetMm10,406 netHg19,383 netHg19,403 netMm10,383 netMm10,403 track augustusGene,14 augustusGene,107 chainHg19,14 chainHg19,58 chainHg19,61 chainHg19,119 chainHg19,259 chainHg19,262 chainHg19,310 chainHg19,345 chainHg19,377 chainHg19,564 chainHg19,691 chainHg19,754 chainMm10,14 chainMm10,58 chainMm10,61 chainMm10,119 chainMm10,259 chainMm10,262 chainMm10,310 chainMm10,345 chainMm10,377 chainMm10,564 chainMm10,691 chainMm10,754 chainNetHg19,17 chainNetHg19,61 chainNetHg19,64 chainNetHg19,122 chainNetHg19,262 chainNetHg19,265 chainNetHg19,313 chainNetHg19,348 chainNetHg19,380 chainNetHg19,567 chainNetHg19,694 chainNetHg19,757 chainNetMm10,17 chainNetMm10,61 chainNetMm10,64 chainNetMm10,122 chainNetMm10,262 chainNetMm10,265 chainNetMm10,313 chainNetMm10,348 chainNetMm10,380 chainNetMm10,567 chainNetMm10,694 chainNetMm10,757 cpgIslandExt,173 cpgIslandExt,202 cpgIslandExt,216 cpgIslandExt,314 cpgIslandExt,318 cpgIslandExt,402 cpgIslandExt,492 cpgIslandExt,586 cpgIslandExtUnmasked,176 cpgIslandExtUnmasked,205 cpgIslandExtUnmasked,219 cpgIslandExtUnmasked,317 cpgIslandExtUnmasked,321 cpgIslandExtUnmasked,405 cpgIslandExtUnmasked,495 cpgIslandExtUnmasked,589 cpgIslandSuper,173 cpgIslandSuper,202 cpgIslandSuper,216 cpgIslandSuper,314 cpgIslandSuper,318 cpgIslandSuper,402 cpgIslandSuper,492 cpgIslandSuper,586 ensGene,136 ensemblGeneScaffold,12 ensemblGeneScaffold,65 gap,9 gap,39 gc5BaseBw,15 gc5BaseBw,39 genscan,12 genscan,66 genscan,76 genscan,87 gold,10 gold,61 gold,129 microsat,12 microsat,51 microsat,59 microsat,87 nestedRepeats,16 nestedRepeats,78 nestedRepeats,80 nestedRepeats,322 netHg19,14 netHg19,58 netHg19,61 netHg19,119 netHg19,259 netHg19,262 netHg19,310 netHg19,345 netHg19,377 netHg19,564 netHg19,691 netHg19,754 netMm10,14 netMm10,58 netMm10,61 netMm10,119 netMm10,259 netMm10,262 netMm10,310 netMm10,345 netMm10,377 netMm10,564 netMm10,691 netMm10,754 quality,14 quality,33 quality,54 rmsk,11 rmsk,52 rmsk,144 rmsk,345 simpleRepeat,13 windowmaskerSdust,14 windowmaskerSdust,50 windowmaskerSdust,88 xenoRefGene,12 xenoRefGene,37 xenoRefGene,46 xenoRefGene,84 xenoRefGene,96 xenoRefGene,139 xenoRefGene,168 xenoRefGene,279 tracks augustusGene,41 chainHg19,768 chainMm10,768 chainNetHg19,771 chainNetMm10,771 ensGene,24 genscan,56 genscan,74 netHg19,768 netMm10,768 xenoRefGene,54 traditional chainHg19,84 chainMm10,84 chainNetHg19,87 chainNetMm10,87 netHg19,84 netMm10,84 trained augustusGene,150 training augustusGene,162 augustusGene,176 augustusGene,180 augustusGene,199 augustusGene,228 augustusGene,243 augustusGene,259 augustusGene,273 transcription cpgIslandExt,32 cpgIslandExtUnmasked,35 cpgIslandSuper,32 transcriptional genscan,28 transcripts augustusGene,124 xenoRefGene,376 translation augustusGene,57 translational genscan,29 transposable nestedRepeats,379 rmsk,402 transposons chainHg19,565 chainHg19,589 chainHg19,898 chainMm10,565 chainMm10,589 chainMm10,898 chainNetHg19,568 chainNetHg19,592 chainNetHg19,901 chainNetMm10,568 chainNetMm10,592 chainNetMm10,901 netHg19,565 netHg19,589 netHg19,898 netMm10,565 netMm10,589 netMm10,898 trends nestedRepeats,353 rmsk,376 trf simpleRepeat,7 simpleRepeat,26 simpleRepeat,61 simpleRepeat,67 tri-nucleotide microsat,5 microsat,34 trimming chainHg19,796 chainMm10,796 chainNetHg19,799 chainNetMm10,799 netHg19,796 netMm10,796 trna rmsk,190 true augustusGene,132 windowmaskerSdust,60 windowmaskerSdust,69 ts cpgIslandExt,106 cpgIslandExtUnmasked,109 cpgIslandSuper,106 turn chainHg19,332 chainMm10,332 chainNetHg19,335 chainNetMm10,335 cpgIslandExt,104 cpgIslandExtUnmasked,107 cpgIslandSuper,104 netHg19,332 netMm10,332 xenoRefGene,131 twice cpgIslandExt,354 cpgIslandExtUnmasked,357 cpgIslandSuper,354 two chainHg19,904 chainMm10,904 chainNetHg19,907 chainNetMm10,907 netHg19,904 netMm10,904 twobittofa cpgIslandExt,411 cpgIslandExt,497 cpgIslandExt,502 cpgIslandExtUnmasked,414 cpgIslandExtUnmasked,500 cpgIslandExtUnmasked,505 cpgIslandSuper,411 cpgIslandSuper,497 cpgIslandSuper,502 type gold,133 types augustusGene,89 chainHg19,504 chainMm10,504 chainNetHg19,507 chainNetMm10,507 gap,81 netHg19,504 netMm10,504 typical cpgIslandExt,161 cpgIslandExtUnmasked,164 cpgIslandSuper,161 typically cpgIslandExt,29 cpgIslandExtUnmasked,32 cpgIslandSuper,29 gc5BaseBw,33 u chainHg19,1067 chainMm10,1067 chainNetHg19,1070 chainNetMm10,1070 netHg19,1067 netMm10,1067 ucsc nestedRepeats,245 xenoRefGene,283 undergone xenoRefGene,67 underlies genscan,142 underlying ensemblGeneScaffold,23 ensemblGeneScaffold,52 xenoRefGene,35 underneath chainHg19,832 chainMm10,832 chainNetHg19,835 chainNetMm10,835 netHg19,832 netMm10,832 ungapped chainHg19,443 chainMm10,443 chainNetHg19,446 chainNetMm10,446 netHg19,443 netMm10,443 university chainHg19,918 chainHg19,952 chainHg19,998 chainHg19,1021 chainMm10,918 chainMm10,952 chainMm10,998 chainMm10,1021 chainNetHg19,921 chainNetHg19,955 chainNetHg19,1001 chainNetHg19,1024 chainNetMm10,921 chainNetMm10,955 chainNetMm10,1001 chainNetMm10,1024 netHg19,918 netHg19,952 netHg19,998 netHg19,1021 netMm10,918 netMm10,952 netMm10,998 netMm10,1021 unknown rmsk,203 unless cpgIslandExt,119 cpgIslandExtUnmasked,122 cpgIslandSuper,119 nestedRepeats,206 unmasked cpgIslandExt,169 cpgIslandExt,208 cpgIslandExt,315 cpgIslandExt,491 cpgIslandExtUnmasked,1 cpgIslandExtUnmasked,172 cpgIslandExtUnmasked,211 cpgIslandExtUnmasked,318 cpgIslandExtUnmasked,494 cpgIslandSuper,169 cpgIslandSuper,208 cpgIslandSuper,315 cpgIslandSuper,491 unprocessed chainHg19,226 chainMm10,226 chainNetHg19,229 chainNetMm10,229 netHg19,226 netMm10,226 unpublished cpgIslandExt,602 cpgIslandExtUnmasked,605 cpgIslandSuper,602 unsequenced chainHg19,184 chainMm10,184 chainNetHg19,187 chainNetMm10,187 netHg19,184 netMm10,184 unsure rmsk,263 up gold,67 rmsk,146 update nestedRepeats,46 nestedRepeats,58 nestedRepeats,336 nestedRepeats,343 rmsk,82 rmsk,94 rmsk,359 rmsk,366 xenoRefGene,341 updated xenoRefGene,39 use gold,77 used augustusGene,146 augustusGene,174 augustusGene,183 augustusGene,231 augustusGene,246 chainHg19,293 chainHg19,665 chainHg19,696 chainHg19,787 chainHg19,839 chainHg19,872 chainMm10,293 chainMm10,665 chainMm10,696 chainMm10,787 chainMm10,839 chainMm10,872 chainNetHg19,296 chainNetHg19,668 chainNetHg19,699 chainNetHg19,790 chainNetHg19,842 chainNetHg19,875 chainNetMm10,296 chainNetMm10,668 chainNetMm10,699 chainNetMm10,790 chainNetMm10,842 chainNetMm10,875 cpgIslandExt,308 cpgIslandExtUnmasked,311 cpgIslandSuper,308 ensGene,36 ensemblGeneScaffold,82 genscan,159 nestedRepeats,247 nestedRepeats,292 nestedRepeats,318 netHg19,293 netHg19,665 netHg19,696 netHg19,787 netHg19,839 netHg19,872 netMm10,293 netMm10,665 netMm10,696 netMm10,787 netMm10,839 netMm10,872 rmsk,299 rmsk,341 useful chainHg19,278 chainHg19,477 chainMm10,278 chainMm10,477 chainNetHg19,281 chainNetHg19,480 chainNetMm10,281 chainNetMm10,480 microsat,20 netHg19,278 netHg19,477 netMm10,278 netMm10,477 users xenoRefGene,148 uses rmsk,79 using augustusGene,294 chainHg19,74 chainHg19,602 chainHg19,761 chainMm10,74 chainMm10,602 chainMm10,761 chainNetHg19,77 chainNetHg19,605 chainNetHg19,764 chainNetMm10,77 chainNetMm10,605 chainNetMm10,764 cpgIslandExt,516 cpgIslandExt,589 cpgIslandExtUnmasked,519 cpgIslandExtUnmasked,592 cpgIslandSuper,516 cpgIslandSuper,589 ensGene,64 microsat,90 nestedRepeats,43 nestedRepeats,104 nestedRepeats,283 netHg19,74 netHg19,602 netHg19,761 netMm10,74 netMm10,602 netMm10,761 rmsk,15 rmsk,290 xenoRefGene,224 ustat windowmaskerSdust,66 usually nestedRepeats,192 utils cpgIslandExt,565 cpgIslandExtUnmasked,568 cpgIslandSuper,565 v ensGene,185 ensemblGeneScaffold,124 v3.1 augustusGene,7 validate xenoRefGene,151 validation genscan,107 variation microsat,7 nestedRepeats,11 rmsk,6 simpleRepeat,8 windowmaskerSdust,9 variety gc5BaseBw,45 quality,60 vb chainHg19,1025 chainMm10,1025 chainNetHg19,1028 chainNetMm10,1028 netHg19,1025 netMm10,1025 version augustusGene,23 augustusGene,263 cpgIslandExt,170 cpgIslandExt,193 cpgIslandExt,199 cpgIslandExt,209 cpgIslandExtUnmasked,173 cpgIslandExtUnmasked,196 cpgIslandExtUnmasked,202 cpgIslandExtUnmasked,212 cpgIslandSuper,170 cpgIslandSuper,193 cpgIslandSuper,199 cpgIslandSuper,209 rmsk,58 versions augustusGene,279 ensGene,133 nestedRepeats,251 nestedRepeats,267 vertebrate cpgIslandExt,59 cpgIslandExt,611 cpgIslandExtUnmasked,62 cpgIslandExtUnmasked,614 cpgIslandSuper,59 cpgIslandSuper,611 vertebrates augustusGene,209 cpgIslandExt,25 cpgIslandExtUnmasked,28 cpgIslandSuper,25 view chainHg19,454 chainMm10,454 chainNetHg19,457 chainNetMm10,457 cpgIslandExt,206 cpgIslandExtUnmasked,209 cpgIslandSuper,206 netHg19,454 netMm10,454 visibility cpgIslandExt,212 cpgIslandExtUnmasked,215 cpgIslandSuper,212 visible cpgIslandExt,188 cpgIslandExtUnmasked,191 cpgIslandSuper,188 w chainHg19,1027 chainHg19,1047 chainHg19,1095 chainMm10,1027 chainMm10,1047 chainMm10,1095 chainNetHg19,1030 chainNetHg19,1050 chainNetHg19,1098 chainNetMm10,1030 chainNetMm10,1050 chainNetMm10,1098 gold,135 netHg19,1027 netHg19,1047 netHg19,1095 netMm10,1027 netMm10,1047 netMm10,1095 waack augustusGene,318 was augustusGene,230 augustusGene,245 augustusGene,264 augustusGene,280 chainHg19,646 chainHg19,664 chainHg19,785 chainHg19,830 chainHg19,838 chainHg19,858 chainHg19,870 chainHg19,895 chainHg19,913 chainHg19,948 chainMm10,646 chainMm10,664 chainMm10,785 chainMm10,830 chainMm10,838 chainMm10,858 chainMm10,870 chainMm10,895 chainMm10,913 chainMm10,948 chainNetHg19,649 chainNetHg19,667 chainNetHg19,788 chainNetHg19,833 chainNetHg19,841 chainNetHg19,861 chainNetHg19,873 chainNetHg19,898 chainNetHg19,916 chainNetHg19,951 chainNetMm10,649 chainNetMm10,667 chainNetMm10,788 chainNetMm10,833 chainNetMm10,841 chainNetMm10,861 chainNetMm10,873 chainNetMm10,898 chainNetMm10,916 chainNetMm10,951 cpgIslandExt,255 cpgIslandExt,307 cpgIslandExt,587 cpgIslandExtUnmasked,258 cpgIslandExtUnmasked,310 cpgIslandExtUnmasked,590 cpgIslandSuper,255 cpgIslandSuper,307 cpgIslandSuper,587 microsat,108 netHg19,646 netHg19,664 netHg19,785 netHg19,830 netHg19,838 netHg19,858 netHg19,870 netHg19,895 netHg19,913 netHg19,948 netMm10,646 netMm10,664 netMm10,785 netMm10,830 netMm10,838 netMm10,858 netMm10,870 netMm10,895 netMm10,913 netMm10,948 rmsk,12 rmsk,262 simpleRepeat,68 windowmaskerSdust,52 windowmaskerSdust,78 xenoRefGene,251 xenoRefGene,280 ways gc5BaseBw,47 quality,62 we ensGene,146 rmsk,122 webb chainHg19,927 chainHg19,964 chainMm10,927 chainMm10,964 chainNetHg19,930 chainNetHg19,967 chainNetMm10,930 chainNetMm10,967 netHg19,927 netHg19,964 netMm10,927 netMm10,964 weekly xenoRefGene,40 well augustusGene,78 cpgIslandExt,549 cpgIslandExtUnmasked,552 cpgIslandSuper,549 genscan,36 rmsk,54 were augustusGene,50 augustusGene,66 augustusGene,125 augustusGene,149 augustusGene,182 chainHg19,575 chainHg19,583 chainHg19,590 chainHg19,597 chainHg19,609 chainHg19,682 chainHg19,756 chainHg19,936 chainHg19,980 chainHg19,994 chainMm10,575 chainMm10,583 chainMm10,590 chainMm10,597 chainMm10,609 chainMm10,682 chainMm10,756 chainMm10,936 chainMm10,980 chainMm10,994 chainNetHg19,578 chainNetHg19,586 chainNetHg19,593 chainNetHg19,600 chainNetHg19,612 chainNetHg19,685 chainNetHg19,759 chainNetHg19,939 chainNetHg19,983 chainNetHg19,997 chainNetMm10,578 chainNetMm10,586 chainNetMm10,593 chainNetMm10,600 chainNetMm10,612 chainNetMm10,685 chainNetMm10,759 chainNetMm10,939 chainNetMm10,983 chainNetMm10,997 cpgIslandExt,227 cpgIslandExtUnmasked,230 cpgIslandSuper,227 ensGene,13 ensemblGeneScaffold,59 gc5BaseBw,79 gold,22 gold,30 netHg19,575 netHg19,583 netHg19,590 netHg19,597 netHg19,609 netHg19,682 netHg19,756 netHg19,936 netHg19,980 netHg19,994 netMm10,575 netMm10,583 netMm10,590 netMm10,597 netMm10,609 netMm10,682 netMm10,756 netMm10,936 netMm10,980 netMm10,994 quality,88 quality,103 xenoRefGene,218 xenoRefGene,234 xenoRefGene,275 when augustusGene,188 augustusGene,238 chainHg19,405 chainMm10,405 chainNetHg19,408 chainNetMm10,408 gold,27 netHg19,405 netMm10,405 quality,40 xenoRefGene,236 where chainHg19,191 chainMm10,191 chainNetHg19,194 chainNetMm10,194 cpgIslandExt,151 cpgIslandExt,393 cpgIslandExtUnmasked,154 cpgIslandExtUnmasked,396 cpgIslandSuper,151 cpgIslandSuper,393 gold,84 netHg19,191 netMm10,191 whether chainHg19,854 chainMm10,854 chainNetHg19,857 chainNetMm10,857 netHg19,854 netMm10,854 which augustusGene,159 augustusGene,227 chainHg19,322 chainHg19,613 chainHg19,819 chainMm10,322 chainMm10,613 chainMm10,819 chainNetHg19,325 chainNetHg19,616 chainNetHg19,822 chainNetMm10,325 chainNetMm10,616 chainNetMm10,822 cpgIslandExt,85 cpgIslandExtUnmasked,88 cpgIslandSuper,85 nestedRepeats,31 nestedRepeats,87 netHg19,322 netHg19,613 netHg19,819 netMm10,322 netMm10,613 netMm10,819 rmsk,21 rmsk,64 rmsk,158 rmsk,171 rmsk,197 simpleRepeat,27 while chainHg19,214 chainMm10,214 chainNetHg19,217 chainNetMm10,217 netHg19,214 netMm10,214 white gap,64 whole chainHg19,462 chainMm10,462 chainNetHg19,465 chainNetMm10,465 cpgIslandExt,167 cpgIslandExtUnmasked,170 cpgIslandSuper,167 gold,137 netHg19,462 netMm10,462 whole-genome gold,19 width cpgIslandExt,430 cpgIslandExt,467 cpgIslandExt,470 cpgIslandExt,478 cpgIslandExtUnmasked,433 cpgIslandExtUnmasked,470 cpgIslandExtUnmasked,473 cpgIslandExtUnmasked,481 cpgIslandSuper,430 cpgIslandSuper,467 cpgIslandSuper,470 cpgIslandSuper,478 will gap,24 rmsk,277 rmsk,283 window-based windowmaskerSdust,101 windowmasker windowmaskerSdust,7 windowmaskerSdust,21 windowmaskerSdust,23 windowmaskerSdust,51 windowmaskerSdust,58 windowmaskerSdust,65 windowmaskerSdust,100 windowmaskersdust windowmaskerSdust,83 windows gc5BaseBw,7 gc5BaseBw,28 wish xenoRefGene,205 with augustusGene,127 augustusGene,322 chainHg19,42 chainHg19,205 chainHg19,216 chainHg19,585 chainHg19,697 chainHg19,773 chainHg19,897 chainHg19,929 chainHg19,961 chainHg19,1098 chainMm10,42 chainMm10,205 chainMm10,216 chainMm10,585 chainMm10,697 chainMm10,773 chainMm10,897 chainMm10,929 chainMm10,961 chainMm10,1098 chainNetHg19,45 chainNetHg19,208 chainNetHg19,219 chainNetHg19,588 chainNetHg19,700 chainNetHg19,776 chainNetHg19,900 chainNetHg19,932 chainNetHg19,964 chainNetHg19,1101 chainNetMm10,45 chainNetMm10,208 chainNetMm10,219 chainNetMm10,588 chainNetMm10,700 chainNetMm10,776 chainNetMm10,900 chainNetMm10,932 chainNetMm10,964 chainNetMm10,1101 cpgIslandExt,19 cpgIslandExt,39 cpgIslandExt,141 cpgIslandExt,540 cpgIslandExtUnmasked,22 cpgIslandExtUnmasked,42 cpgIslandExtUnmasked,144 cpgIslandExtUnmasked,543 cpgIslandSuper,19 cpgIslandSuper,39 cpgIslandSuper,141 cpgIslandSuper,540 gap,17 gc5BaseBw,35 microsat,69 microsat,76 nestedRepeats,133 netHg19,42 netHg19,205 netHg19,216 netHg19,585 netHg19,697 netHg19,773 netHg19,897 netHg19,929 netHg19,961 netHg19,1098 netMm10,42 netMm10,205 netMm10,216 netMm10,585 netMm10,697 netMm10,773 netMm10,897 netMm10,929 netMm10,961 netMm10,1098 rmsk,111 rmsk,225 simpleRepeat,52 windowmaskerSdust,54 xenoRefGene,227 xenoRefGene,271 within gold,48 gold,106 gold,127 simpleRepeat,37 xenoRefGene,82 xenoRefGene,260 wj chainHg19,1041 chainHg19,1083 chainMm10,1041 chainMm10,1083 chainNetHg19,1044 chainNetHg19,1086 chainNetMm10,1044 chainNetMm10,1086 netHg19,1041 netHg19,1083 netMm10,1041 netMm10,1083 xenoRefGene,301 wm windowmaskerSdust,1 wm_counts windowmaskerSdust,64 windowmaskerSdust,67 worldwide xenoRefGene,291 would cpgIslandExt,184 cpgIslandExtUnmasked,187 cpgIslandSuper,184 ensGene,147 written genscan,19 microsat,109 quality,104 simpleRepeat,69 www.repeatmasker.org nestedRepeats,333 rmsk,356 y ensGene,177 ensemblGeneScaffold,116 yap chainHg19,1024 chainMm10,1024 chainNetHg19,1027 chainNetMm10,1027 netHg19,1024 netMm10,1024 you rmsk,115 xenoRefGene,204 younger nestedRepeats,94 z chainHg19,1087 chainMm10,1087 chainNetHg19,1090 chainNetMm10,1090 netHg19,1087 netMm10,1087 zebrafish augustusGene,202 augustusGene,278 zhang chainHg19,925 chainHg19,1086 chainMm10,925 chainMm10,1086 chainNetHg19,928 chainNetHg19,1089 chainNetMm10,928 chainNetMm10,1089 netHg19,925 netHg19,1086 netMm10,925 netMm10,1086 zheng chainHg19,924 chainMm10,924 chainNetHg19,927 chainNetMm10,927 netHg19,924 netMm10,924 zoomed quality,41 zoomed-in genscan,103