0.2 augustusGene,136 0.5 augustusGene,138 mrna,384 xenoRefGene,255 000 gcPercent,30 000-base gcPercent,7 1 augustusGene,310 chainDm2,571 genscan,227 mrna,440 netDm2,75 netDm2,206 netDm2,540 10 geneid,192 100 augustusGene,134 chainDm2,526 chainDm2,539 microsat,70 netDm2,508 1000-2000 augustusGene,161 103-7 chainDm2,572 netDm2,541 10779490 geneid,196 10973072 rmsk,325 11484-11489 chainDm2,528 11484-9 chainDm2,541 netDm2,510 115-26 chainDm2,495 11928468 chainDm2,497 11932250 mrna,464 xenoRefGene,309 12 mrna,460 xenoRefGene,305 12529312 chainDm2,574 netDm2,543 127-163 genscan,206 13 chainDm2,570 netDm2,539 14500911 chainDm2,543 netDm2,512 14534192 augustusGene,340 14681350 mrna,446 15 microsat,30 microsat,79 microsat,130 simpleRepeat,90 xenoRefGene,227 16 rmsk,321 18218656 augustusGene,315 18428791 geneid,177 19 augustusGene,335 1990 blastDm2FB,185 1997 genscan,149 genscan,223 1998 genscan,167 genscan,204 1999 microsat,103 microsat,128 simpleRepeat,65 simpleRepeat,88 2 augustusGene,142 augustusGene,337 microsat,66 microsat,132 netDm2,109 netDm2,114 simpleRepeat,92 20 chainDm2,527 chainDm2,540 gcPercent,6 gcPercent,29 netDm2,509 2000 geneid,190 rmsk,100 rmsk,319 2002 chainDm2,494 mrna,458 xenoRefGene,303 2003 augustusGene,333 chainDm2,529 chainDm2,536 chainDm2,568 netDm2,505 netDm2,537 2004 blastDm2FB,7 chainDm2,7 chainDm2,78 mrna,438 netDm2,7 netDm2,58 2005 blastDm2FB,41 2007 geneid,170 2008 augustusGene,308 215 blastDm2FB,188 24 augustusGene,311 243 geneid,160 geneid,183 25 blastDm2FB,39 gap,89 genscan,225 xenoRefGene,262 268 genscan,226 27 microsat,131 simpleRepeat,91 3 augustusGene,140 blastDm2FB,189 microsat,68 netDm2,121 3.1 augustusGene,24 30 chainDm2,538 netDm2,507 32 mrna,441 4 geneid,173 geneid,193 mrna,461 xenoRefGene,306 4.3 geneid,175 403-410 blastDm2FB,190 418-20 rmsk,323 5 augustusGene,312 blastDm2FB,187 50 gap,110 gap,118 511-5 geneid,194 573-80 microsat,133 simpleRepeat,93 60 blastDm2FB,121 blastDm2FB,133 blastDm2FB,141 637-44 augustusGene,313 656-64 mrna,462 xenoRefGene,307 78-94 genscan,228 9 rmsk,322 9149143 genscan,230 96 mrna,391 9862982 microsat,135 simpleRepeat,95 a augustusGene,116 augustusGene,128 augustusGene,152 augustusGene,215 augustusGene,218 augustusGene,233 augustusGene,323 augustusGene,328 chainDm2,26 chainDm2,111 chainDm2,166 chainDm2,347 chainDm2,352 chainDm2,358 chainDm2,362 chainDm2,385 chainDm2,394 chainDm2,503 chainDm2,535 chainDm2,551 gap,59 gap,63 gcPercent,28 geneid,52 geneid,63 geneid,114 genscan,102 genscan,132 microsat,53 microsat,119 mrna,64 mrna,81 mrna,116 mrna,142 mrna,323 mrna,360 mrna,379 netDm2,141 netDm2,151 netDm2,155 netDm2,222 netDm2,239 netDm2,242 netDm2,292 netDm2,306 netDm2,312 netDm2,318 netDm2,322 netDm2,325 netDm2,353 netDm2,480 netDm2,504 netDm2,520 rmsk,36 rmsk,56 rmsk,196 rmsk,308 simpleRepeat,79 xenoRefGene,231 xenoRefGene,250 ab augustusGene,3 augustusGene,16 abbreviated chainDm2,311 about genscan,127 microsat,98 mrna,340 netDm2,147 netDm2,160 netDm2,342 simpleRepeat,59 xenoRefGene,180 above netDm2,219 netDm2,231 netDm2,251 abundance chainDm2,147 acad chainDm2,523 chainDm2,531 netDm2,500 acceptor genscan,32 accession xenoRefGene,118 xenoRefGene,130 according augustusGene,114 acid blastDm2FB,75 acids blastDm2FB,147 microsat,126 mrna,436 simpleRepeat,86 additional rmsk,254 advice chainDm2,423 chainDm2,455 netDm2,442 affine chainDm2,36 after netDm2,400 against mrna,333 mrna,352 xenoRefGene,213 algorithm augustusGene,130 aligned blastDm2FB,58 blastDm2FB,83 chainDm2,314 mrna,351 mrna,363 xenoRefGene,212 xenoRefGene,234 aligning chainDm2,100 chainDm2,246 chainDm2,276 alignment blastDm2FB,179 chainDm2,223 mrna,39 mrna,368 mrna,454 netDm2,11 xenoRefGene,223 xenoRefGene,239 xenoRefGene,299 alignments augustusGene,300 blastDm2FB,21 chainDm2,12 chainDm2,24 chainDm2,325 chainDm2,328 chainDm2,345 chainDm2,373 chainDm2,490 chainDm2,563 mrna,17 mrna,377 netDm2,134 netDm2,258 netDm2,532 rmsk,265 xenoRefGene,248 all augustusGene,207 chainDm2,343 chainDm2,366 mrna,138 mrna,192 mrna,236 rmsk,65 allows augustusGene,168 chainDm2,31 mrna,326 xenoRefGene,149 alone augustusGene,33 along geneid,80 already netDm2,303 also blastDm2FB,149 chainDm2,42 mrna,208 mrna,316 alter mrna,75 alternative augustusGene,122 alternatives-from-sampling augustusGene,131 altschul blastDm2FB,167 alus rmsk,131 amino blastDm2FB,74 blastDm2FB,146 amount rmsk,185 amsterdam genscan,201 an blastDm2FB,103 chainDm2,119 chainDm2,146 chainDm2,152 rmsk,311 xenoRefGene,143 xenoRefGene,222 analyze microsat,122 simpleRepeat,82 and augustusGene,9 augustusGene,60 augustusGene,74 augustusGene,87 augustusGene,206 augustusGene,271 augustusGene,277 augustusGene,296 augustusGene,327 blastDm2FB,13 blastDm2FB,28 blastDm2FB,137 chainDm2,49 chainDm2,64 chainDm2,195 chainDm2,201 chainDm2,213 chainDm2,226 chainDm2,308 chainDm2,334 chainDm2,351 chainDm2,360 chainDm2,419 chainDm2,434 chainDm2,459 chainDm2,465 chainDm2,476 chainDm2,513 chainDm2,518 gap,5 gap,44 gap,62 gcPercent,10 gcPercent,23 geneid,7 geneid,73 geneid,78 genscan,7 genscan,30 genscan,40 genscan,46 genscan,63 genscan,83 genscan,97 genscan,108 genscan,119 genscan,138 genscan,147 microsat,4 microsat,8 microsat,33 microsat,36 microsat,67 microsat,72 microsat,75 mrna,10 mrna,24 mrna,29 mrna,78 mrna,228 mrna,388 netDm2,41 netDm2,66 netDm2,123 netDm2,269 netDm2,347 netDm2,379 netDm2,390 netDm2,399 netDm2,409 netDm2,438 netDm2,453 netDm2,460 netDm2,471 netDm2,490 netDm2,495 rmsk,7 rmsk,28 rmsk,108 rmsk,191 rmsk,222 rmsk,289 rmsk,295 rmsk,310 simpleRepeat,9 simpleRepeat,42 xenoRefGene,8 xenoRefGene,17 xenoRefGene,45 xenoRefGene,79 xenoRefGene,129 xenoRefGene,154 xenoRefGene,191 xenoRefGene,259 xenoRefGene,286 annotated rmsk,67 annotation netDm2,53 rmsk,38 annotations genscan,120 anonymous geneid,58 any mrna,251 apply mrna,134 appropriate xenoRefGene,112 apr blastDm2FB,6 chainDm2,6 chainDm2,77 geneid,191 genscan,224 mrna,459 netDm2,6 netDm2,57 xenoRefGene,304 are augustusGene,27 chainDm2,107 chainDm2,162 chainDm2,178 chainDm2,189 chainDm2,235 chainDm2,401 gap,32 gcPercent,38 geneid,76 geneid,90 geneid,96 genscan,25 genscan,160 microsat,16 microsat,25 microsat,52 mrna,48 mrna,95 mrna,105 netDm2,77 netDm2,98 netDm2,105 netDm2,188 rmsk,43 rmsk,240 rmsk,247 rmsk,263 rmsk,271 simpleRepeat,49 xenoRefGene,40 xenoRefGene,105 xenoRefGene,194 areas gcPercent,56 arian chainDm2,432 netDm2,451 rmsk,16 rmsk,287 arrays geneid,86 as augustusGene,77 augustusGene,79 blastDm2FB,37 gap,34 geneid,98 genscan,35 genscan,37 microsat,21 netDm2,150 netDm2,190 netDm2,213 netDm2,228 netDm2,296 netDm2,351 rmsk,53 rmsk,55 assembled geneid,131 geneid,140 assemblies augustusGene,196 augustusGene,237 chainDm2,234 assembly augustusGene,197 chainDm2,83 chainDm2,117 chainDm2,125 gap,14 netDm2,63 associated gcPercent,53 rmsk,194 simpleRepeat,51 at blastDm2FB,139 chainDm2,408 chainDm2,443 chainDm2,448 gap,87 gcPercent,62 microsat,28 microsat,77 mrna,389 mrna,406 netDm2,107 netDm2,291 netDm2,414 netDm2,427 xenoRefGene,93 xenoRefGene,260 xenoRefGene,276 augustus augustusGene,1 augustusGene,2 augustusGene,22 augustusGene,148 augustusGene,256 available augustusGene,239 rmsk,73 rmsk,225 rmsk,242 axt chainDm2,332 axtchain chainDm2,340 chainDm2,341 chainDm2,439 axts chainDm2,337 back chainDm2,322 baertsch augustusGene,290 chainDm2,475 chainDm2,500 chainDm2,554 netDm2,470 netDm2,477 netDm2,523 barcelona geneid,46 base gcPercent,31 mrna,372 mrna,380 mrna,392 rmsk,187 rmsk,189 rmsk,192 xenoRefGene,243 xenoRefGene,251 xenoRefGene,263 based augustusGene,28 chainDm2,237 chainDm2,263 gap,103 genscan,26 bases gap,92 gcPercent,26 basic blastDm2FB,177 bdgp blastDm2FB,8 chainDm2,8 chainDm2,79 netDm2,8 netDm2,59 be augustusGene,99 chainDm2,59 gap,25 gap,97 microsat,19 microsat,39 mrna,68 mrna,90 mrna,199 mrna,209 mrna,240 mrna,258 mrna,268 mrna,317 netDm2,117 rmsk,235 rmsk,257 simpleRepeat,44 xenoRefGene,88 been chainDm2,297 rmsk,70 before netDm2,398 below chainDm2,393 genscan,154 genscan,168 rmsk,105 benson microsat,102 microsat,112 microsat,114 mrna,423 simpleRepeat,64 simpleRepeat,72 simpleRepeat,74 best blastDm2FB,114 mrna,387 netDm2,20 netDm2,200 xenoRefGene,258 better mrna,55 between chainDm2,346 mrna,18 netDm2,345 biocomput chainDm2,493 bioinformatics augustusGene,307 augustusGene,332 geneid,169 biol blastDm2FB,184 genscan,222 biology geneid,27 geneid,146 genscan,200 birds augustusGene,203 black gap,35 gap,70 blanco geneid,155 geneid,180 blast blastDm2FB,158 blastDm2FB,165 blast-like mrna,453 xenoRefGene,298 blastz chainDm2,316 chainDm2,405 chainDm2,565 netDm2,257 netDm2,424 netDm2,534 blat blastDm2FB,66 blastDm2FB,191 mrna,357 mrna,451 xenoRefGene,219 xenoRefGene,296 blocks chainDm2,370 chainDm2,380 both chainDm2,46 chainDm2,68 chainDm2,137 netDm2,388 xenoRefGene,126 xenoRefGene,188 boundaries blastDm2FB,71 box chainDm2,287 gap,71 mrna,154 mrna,165 mrna,205 netDm2,142 xenoRefGene,207 boxes chainDm2,88 chainDm2,98 gap,36 mrna,125 netDm2,131 branch-point augustusGene,55 brian blastDm2FB,211 bridged gap,60 browser chainDm2,463 mrna,172 mrna,285 mrna,302 netDm2,458 built augustusGene,51 augustusGene,67 geneid,91 burge genscan,22 genscan,146 genscan,166 genscan,173 genscan,180 genscan,207 but blastDm2FB,108 netDm2,233 rmsk,270 button chainDm2,258 by augustusGene,147 augustusGene,266 augustusGene,282 blastDm2FB,194 blastDm2FB,207 chainDm2,61 chainDm2,91 chainDm2,228 chainDm2,291 chainDm2,383 chainDm2,412 chainDm2,431 chainDm2,451 chainDm2,473 gap,82 geneid,21 genscan,20 genscan,88 genscan,121 microsat,110 mrna,419 netDm2,101 netDm2,119 netDm2,305 netDm2,421 netDm2,431 netDm2,450 netDm2,468 rmsk,4 rmsk,14 rmsk,50 simpleRepeat,6 simpleRepeat,22 simpleRepeat,70 xenoRefGene,102 xenoRefGene,107 xenoRefGene,171 xenoRefGene,186 xenoRefGene,283 xenoRefGene,288 c gcPercent,24 genscan,181 genscan,208 caenorhabditis augustusGene,212 california chainDm2,447 netDm2,418 can augustusGene,98 chainDm2,41 chainDm2,58 mrna,67 mrna,198 simpleRepeat,35 xenoRefGene,87 cases chainDm2,159 netDm2,88 catalunya geneid,47 categorized netDm2,189 cauldron chainDm2,510 netDm2,487 cause netDm2,171 caused chainDm2,60 cdna augustusGene,299 centre geneid,37 cerevisiae augustusGene,222 certain rmsk,260 chain chainDm2,3 chainDm2,85 netDm2,25 netDm2,94 netDm2,149 netDm2,265 netDm2,308 netDm2,319 netDm2,327 netDm2,332 netDm2,355 netDm2,364 chained blastDm2FB,100 chainDm2,11 chainnet netDm2,282 netDm2,407 chains blastDm2FB,116 blastDm2FB,129 chainDm2,164 chainDm2,174 chainDm2,185 chainDm2,231 chainDm2,270 chainDm2,377 chainDm2,391 chainDm2,400 chainDm2,470 netDm2,76 netDm2,81 netDm2,103 netDm2,115 netDm2,122 netDm2,179 netDm2,253 netDm2,274 netDm2,289 netDm2,349 netDm2,380 change mrna,71 chapter geneid,172 characteristic mrna,265 check chainDm2,253 chiaromonte chainDm2,480 chicken augustusGene,204 augustusGene,262 choose augustusGene,171 mrna,221 mrna,260 chosen mrna,283 chr4 chainDm2,285 chris genscan,21 genscan,172 chromosome chainDm2,211 chainDm2,240 chainDm2,265 chainDm2,273 chainDm2,283 chainDm2,292 chainDm2,356 netDm2,212 netDm2,227 netDm2,243 chromosome-based chainDm2,233 circle rmsk,172 class rmsk,169 classes rmsk,121 click mrna,343 netDm2,139 netDm2,153 xenoRefGene,110 xenoRefGene,175 xenoRefGene,205 closed gap,26 closest augustusGene,241 coding geneid,118 simpleRepeat,38 xenoRefGene,203 codon genscan,100 genscan,122 mrna,321 xenoRefGene,138 xenoRefGene,145 xenoRefGene,160 codons geneid,75 genscan,89 genscan,93 xenoRefGene,165 xenoRefGene,172 collection xenoRefGene,33 color chainDm2,261 genscan,86 genscan,96 mrna,77 mrna,262 rmsk,177 xenoRefGene,58 xenoRefGene,169 colored chainDm2,236 coloring chainDm2,252 genscan,116 mrna,322 xenoRefGene,139 xenoRefGene,146 colors xenoRefGene,81 xenoRefGene,161 combination mrna,224 combined rmsk,202 comparative chainDm2,13 netDm2,13 compare mrna,331 xenoRefGene,155 comparison genscan,109 complete genscan,213 completely xenoRefGene,137 complex chainDm2,130 complexity rmsk,30 rmsk,153 compositional genscan,41 computational geneid,26 geneid,145 genscan,196 conditional augustusGene,118 configuration chainDm2,227 genscan,64 genscan,84 mrna,30 netDm2,67 rmsk,109 xenoRefGene,46 configured mrna,318 xenoRefGene,89 consecutive gap,90 considered gap,95 consult mrna,166 contained netDm2,381 contains blastDm2FB,19 mrna,191 xenoRefGene,142 content augustusGene,71 gcPercent,37 gcPercent,47 gcPercent,50 contig gap,106 contigs gap,48 controls xenoRefGene,92 conventions chainDm2,225 genscan,62 genscan,70 mrna,28 mrna,36 netDm2,65 rmsk,107 xenoRefGene,44 xenoRefGene,52 converted chainDm2,330 copies microsat,80 corresponds mrna,174 covered netDm2,304 created microsat,89 rmsk,13 credits augustusGene,247 blastDm2FB,151 chainDm2,404 gcPercent,57 geneid,142 genscan,169 microsat,104 mrna,400 netDm2,405 rmsk,284 simpleRepeat,66 xenoRefGene,271 crg geneid,44 criteria mrna,238 mrna,256 mrna,294 mrna,312 cruz chainDm2,450 netDm2,420 culex augustusGene,220 curated xenoRefGene,287 curr geneid,167 current mrna,109 rmsk,216 cytosine gcPercent,25 d augustusGene,293 blastDm2FB,1 blastDm2FB,4 blastDm2FB,34 blastDm2FB,44 blastDm2FB,53 blastDm2FB,61 blastDm2FB,86 blastDm2FB,96 chainDm2,1 chainDm2,4 chainDm2,19 chainDm2,21 chainDm2,47 chainDm2,50 chainDm2,71 chainDm2,115 chainDm2,123 chainDm2,171 chainDm2,301 chainDm2,303 chainDm2,349 chainDm2,354 chainDm2,507 chainDm2,559 genscan,192 mrna,1 mrna,4 mrna,19 mrna,347 netDm2,1 netDm2,4 netDm2,21 netDm2,23 netDm2,31 netDm2,47 netDm2,484 netDm2,528 xenoRefGene,24 xenoRefGene,215 d23-6 mrna,444 da mrna,424 dark xenoRefGene,75 darkly gcPercent,41 mrna,50 data geneid,153 microsat,47 mrna,411 rmsk,229 rmsk,246 xenoRefGene,36 xenoRefGene,281 database chainDm2,466 mrna,442 netDm2,461 rmsk,309 databases mrna,418 david chainDm2,460 de augustusGene,303 geneid,38 default chainDm2,229 xenoRefGene,103 xenoRefGene,187 defining geneid,106 deletion chainDm2,112 chainDm2,512 netDm2,489 rmsk,190 deletions chainDm2,66 chainDm2,145 dense mrna,42 dependencies genscan,183 depicts gap,10 derived netDm2,255 described genscan,161 netDm2,262 rmsk,96 describes augustusGene,226 description augustusGene,12 blastDm2FB,16 chainDm2,15 gap,7 gcPercent,12 geneid,10 genscan,10 genscan,77 genscan,133 microsat,10 mrna,12 mrna,58 netDm2,15 netDm2,267 rmsk,9 simpleRepeat,11 xenoRefGene,11 xenoRefGene,99 descriptions augustusGene,91 designed geneid,61 desired mrna,223 detail genscan,164 detailed augustusGene,90 netDm2,145 netDm2,164 rmsk,37 determining netDm2,169 developed chainDm2,407 chainDm2,442 geneid,20 netDm2,413 netDm2,426 di-nucleotide microsat,3 microsat,32 diekhans augustusGene,288 different augustusGene,39 augustusGene,85 augustusGene,96 augustusGene,144 augustusGene,155 augustusGene,179 augustusGene,193 genscan,54 netDm2,244 rmsk,120 discarded chainDm2,397 xenoRefGene,229 discover blastDm2FB,69 diseases simpleRepeat,54 display chainDm2,203 chainDm2,224 chainDm2,267 chainDm2,464 genscan,61 genscan,69 genscan,104 mrna,27 mrna,35 mrna,43 mrna,73 mrna,100 mrna,130 mrna,264 mrna,288 mrna,304 mrna,320 netDm2,64 netDm2,70 netDm2,129 netDm2,158 netDm2,187 netDm2,459 rmsk,106 rmsk,112 rmsk,182 xenoRefGene,43 xenoRefGene,51 xenoRefGene,80 xenoRefGene,116 xenoRefGene,159 displayed chainDm2,402 netDm2,106 netDm2,203 xenoRefGene,195 displays chainDm2,87 microsat,13 rmsk,116 simpleRepeat,14 dissertation augustusGene,105 distributions augustusGene,83 genscan,42 diverged netDm2,404 dj blastDm2FB,176 mrna,428 dl mrna,432 dm2 blastDm2FB,10 chainDm2,10 chainDm2,81 chainDm2,82 netDm2,10 netDm2,61 netDm2,62 dna geneid,119 genscan,219 microsat,123 rmsk,23 rmsk,31 rmsk,145 rmsk,148 simpleRepeat,83 done augustusGene,265 augustusGene,281 donor genscan,31 double chainDm2,95 chainDm2,126 double-lined chainDm2,187 double-sided chainDm2,55 downloads rmsk,76 drawn gap,67 gcPercent,39 drosophila augustusGene,213 geneid,187 due chainDm2,109 chainDm2,180 chainDm2,192 duplication chainDm2,511 netDm2,488 during gap,27 netDm2,309 dynamic chainDm2,386 e geneid,156 geneid,181 e.g chainDm2,284 each blastDm2FB,80 chainDm2,221 genscan,99 mrna,163 editors genscan,195 either chainDm2,92 gap,50 electronic rmsk,312 element rmsk,198 elements rmsk,3 rmsk,127 rmsk,135 rmsk,140 rmsk,147 rmsk,316 elsevier genscan,202 emerged netDm2,315 enter chainDm2,278 entered mrna,200 especially mrna,101 est mrna,11 every netDm2,27 evolution chainDm2,508 netDm2,485 ew blastDm2FB,174 example mrna,132 mrna,185 exception gap,19 exclude mrna,80 mrna,274 mrna,280 exist netDm2,90 exon augustusGene,86 blastDm2FB,70 blastDm2FB,81 blastDm2FB,115 blastDm2FB,128 exons blastDm2FB,98 geneid,89 geneid,95 geneid,126 geneid,141 genscan,44 expansions simpleRepeat,48 expressed mrna,140 extend rmsk,267 extended blastDm2FB,131 extending blastDm2FB,117 extracted gap,78 f chainDm2,481 facilitate genscan,106 factor mrna,177 faq augustusGene,45 genscan,60 rmsk,280 feature chainDm2,207 genscan,129 mrna,324 xenoRefGene,147 xenoRefGene,182 features xenoRefGene,83 fed chainDm2,338 fewer gap,113 field augustusGene,120 fill netDm2,339 netDm2,372 filled netDm2,99 netDm2,118 netDm2,321 netDm2,394 filter chainDm2,290 genscan,82 mrna,65 mrna,114 mrna,127 mrna,136 mrna,183 mrna,213 mrna,237 mrna,255 mrna,293 mrna,311 filtered mrna,276 filtering mrna,215 finally blastDm2FB,93 geneid,120 finder microsat,94 microsat,107 microsat,118 simpleRepeat,25 simpleRepeat,78 finding augustusGene,306 netDm2,38 finishing gap,29 first blastDm2FB,48 geneid,68 netDm2,279 fish augustusGene,201 fit netDm2,299 flag rmsk,253 flags rmsk,255 fly augustusGene,214 flybase blastDm2FB,36 blastDm2FB,55 following genscan,81 follows genscan,67 mrna,33 xenoRefGene,49 for augustusGene,34 augustusGene,52 augustusGene,68 augustusGene,80 augustusGene,175 augustusGene,184 augustusGene,192 augustusGene,232 augustusGene,253 augustusGene,260 augustusGene,274 blastDm2FB,161 chainDm2,220 gap,84 geneid,117 geneid,150 genscan,49 genscan,71 genscan,124 genscan,131 genscan,174 microsat,95 mrna,37 mrna,60 mrna,131 mrna,162 mrna,184 mrna,337 netDm2,26 netDm2,37 netDm2,42 netDm2,176 rmsk,25 rmsk,259 rmsk,281 rmsk,291 simpleRepeat,30 simpleRepeat,56 xenoRefGene,20 xenoRefGene,53 xenoRefGene,177 format chainDm2,333 forth netDm2,125 found augustusGene,100 chainDm2,382 mrna,375 four netDm2,193 from augustusGene,19 blastDm2FB,25 blastDm2FB,51 chainDm2,75 chainDm2,142 chainDm2,424 chainDm2,456 gap,79 geneid,16 geneid,92 geneid,121 genscan,15 mrna,7 mrna,408 netDm2,55 netDm2,245 netDm2,256 netDm2,443 rmsk,86 xenoRefGene,27 xenoRefGene,167 xenoRefGene,278 full chainDm2,202 netDm2,69 rmsk,111 furthermore augustusGene,64 g gcPercent,21 geneid,158 geneid,179 microsat,115 simpleRepeat,75 gambiae augustusGene,219 gap blastDm2FB,106 blastDm2FB,110 chainDm2,27 chainDm2,37 chainDm2,154 gap,1 gap,2 gap,54 gap,61 gap,74 gap,75 netDm2,162 netDm2,174 netDm2,197 netDm2,215 netDm2,230 netDm2,247 netDm2,323 gapless chainDm2,368 gaps chainDm2,33 chainDm2,44 chainDm2,57 chainDm2,105 chainDm2,131 chainDm2,177 chainDm2,188 gap,11 gap,16 gap,23 gap,31 gap,93 gap,107 gap,115 netDm2,89 netDm2,111 netDm2,138 netDm2,378 netDm2,384 gary microsat,111 simpleRepeat,71 gc gcPercent,1 gcPercent,4 gcPercent,14 gcPercent,36 gcPercent,46 gcPercent,49 gen geneid,41 genbank mrna,8 mrna,23 mrna,346 mrna,433 gene augustusGene,5 augustusGene,10 augustusGene,40 augustusGene,112 augustusGene,157 augustusGene,163 augustusGene,305 augustusGene,320 blastDm2FB,14 geneid,4 geneid,8 geneid,14 geneid,128 genscan,4 genscan,8 genscan,55 genscan,72 genscan,111 genscan,117 genscan,214 xenoRefGene,9 xenoRefGene,54 xenoRefGene,108 xenoRefGene,123 xenoRefGene,128 xenoRefGene,156 gene-rich gcPercent,55 geneid geneid,1 geneid,3 geneid,18 geneid,50 geneid,163 geneid,185 generally rmsk,72 generate rmsk,227 rmsk,300 generated chainDm2,472 gcPercent,61 rmsk,248 xenoRefGene,282 generating augustusGene,189 genes augustusGene,8 augustusGene,44 blastDm2FB,12 blastDm2FB,30 geneid,2 geneid,6 geneid,56 geneid,166 genscan,2 genscan,6 genscan,59 simpleRepeat,41 xenoRefGene,6 xenoRefGene,7 xenoRefGene,19 xenoRefGene,185 xenoRefGene,193 xenoRefGene,204 genet rmsk,318 genetic rmsk,88 genome augustusGene,31 blastDm2FB,63 chainDm2,173 chainDm2,566 geneid,188 mrna,26 mrna,354 mrna,456 netDm2,33 netDm2,44 netDm2,277 netDm2,535 xenoRefGene,217 xenoRefGene,301 genomes chainDm2,312 chainDm2,520 netDm2,497 genomic chainDm2,23 chainDm2,488 geneid,59 genscan,92 genscan,218 mrna,335 mrna,396 netDm2,181 xenoRefGene,164 xenoRefGene,267 genomics chainDm2,14 netDm2,14 genscan genscan,1 genscan,3 genscan,17 genscan,136 genscan,177 giri rmsk,92 rmsk,290 gish blastDm2FB,169 go genscan,113 graphical netDm2,128 rmsk,181 greater gap,116 group augustusGene,198 augustusGene,235 chainDm2,359 geneid,31 groups augustusGene,194 guanine gcPercent,22 guig geneid,23 geneid,159 geneid,182 hardison chainDm2,426 chainDm2,556 netDm2,445 netDm2,525 has mrna,63 rmsk,212 xenoRefGene,68 haussler augustusGene,292 chainDm2,461 chainDm2,506 chainDm2,558 netDm2,483 netDm2,527 have chainDm2,296 rmsk,69 having mrna,369 mrna,378 xenoRefGene,240 xenoRefGene,249 helpful mrna,91 here chainDm2,403 mrna,344 xenoRefGene,176 heterochromatic gap,22 hidden augustusGene,324 hide xenoRefGene,183 hierarchical geneid,64 hierarchy netDm2,314 high gcPercent,35 gcPercent,48 higher netDm2,346 rmsk,200 higher-level netDm2,363 higher-scoring netDm2,307 netDm2,326 highest mrna,371 xenoRefGene,242 highest-scoring netDm2,80 netDm2,273 highlight mrna,271 highlighted mrna,241 mrna,259 highly microsat,40 hinrichs chainDm2,502 netDm2,479 his chainDm2,435 netDm2,454 honeybee1 augustusGene,217 hou chainDm2,414 netDm2,433 how netDm2,374 netDm2,391 human augustusGene,205 augustusGene,210 augustusGene,276 chainDm2,519 genscan,217 netDm2,496 human-mouse chainDm2,562 netDm2,531 i mrna,426 identified blastDm2FB,31 chainDm2,430 netDm2,449 xenoRefGene,246 identify geneid,165 identity microsat,71 mrna,373 mrna,381 mrna,393 xenoRefGene,244 xenoRefGene,252 xenoRefGene,264 if gap,40 mrna,214 mrna,226 mrna,242 mrna,278 mrna,295 xenoRefGene,196 ii215-25 augustusGene,338 imperfect simpleRepeat,19 improve augustusGene,302 in augustusGene,101 blastDm2FB,32 chainDm2,45 chainDm2,67 chainDm2,113 chainDm2,121 chainDm2,136 chainDm2,155 chainDm2,158 chainDm2,198 chainDm2,215 chainDm2,244 chainDm2,274 chainDm2,286 chainDm2,515 gap,12 gap,37 gap,120 gcPercent,5 gcPercent,27 geneid,45 geneid,57 geneid,66 geneid,186 genscan,101 genscan,150 genscan,162 genscan,165 genscan,184 genscan,188 genscan,198 genscan,216 microsat,42 microsat,49 mrna,22 mrna,41 mrna,97 mrna,118 mrna,141 mrna,151 mrna,169 mrna,211 mrna,364 netDm2,51 netDm2,68 netDm2,86 netDm2,91 netDm2,100 netDm2,112 netDm2,126 netDm2,168 netDm2,185 netDm2,216 netDm2,234 netDm2,248 netDm2,275 netDm2,316 netDm2,324 netDm2,340 netDm2,373 netDm2,385 netDm2,492 rmsk,45 rmsk,63 rmsk,97 rmsk,101 rmsk,110 rmsk,179 rmsk,276 xenoRefGene,235 include mrna,79 mrna,273 mrna,297 rmsk,130 rmsk,143 included augustusGene,160 blastDm2FB,127 blastDm2FB,150 includes rmsk,168 including rmsk,159 indels microsat,74 indicate chainDm2,104 chainDm2,209 mrna,52 indicates xenoRefGene,60 individual chainDm2,206 netDm2,183 information augustusGene,36 blastDm2FB,163 genscan,51 genscan,126 microsat,97 mrna,339 netDm2,146 netDm2,159 netDm2,165 netDm2,341 rmsk,89 rmsk,283 simpleRepeat,58 xenoRefGene,179 initiate rmsk,275 initio augustusGene,4 augustusGene,17 inserted chainDm2,298 netDm2,397 insertion chainDm2,120 rmsk,193 instead xenoRefGene,120 institute rmsk,91 intergenic genscan,47 international mrna,415 internet rmsk,245 interspersed rmsk,26 rmsk,125 rmsk,133 into chainDm2,323 chainDm2,331 chainDm2,339 chainDm2,357 mrna,201 netDm2,300 intractable gap,21 intron augustusGene,88 augustusGene,330 introns genscan,45 inv netDm2,221 inversions chainDm2,63 chainDm2,143 inverted netDm2,359 involve chainDm2,133 is blastDm2FB,153 chainDm2,74 gap,55 gap,58 gap,66 gcPercent,51 geneid,33 geneid,51 geneid,130 microsat,88 mrna,230 mrna,246 mrna,282 mrna,299 netDm2,35 netDm2,54 netDm2,166 rmsk,95 simpleRepeat,28 issue mrna,443 it chainDm2,40 gap,57 genscan,143 netDm2,34 netDm2,220 netDm2,232 item xenoRefGene,77 items mrna,46 mrna,84 mrna,94 mrna,277 netDm2,184 xenoRefGene,104 j blastDm2FB,182 genscan,220 mrna,430 rmsk,99 rmsk,305 jan chainDm2,569 microsat,129 mrna,439 netDm2,538 simpleRepeat,89 jim blastDm2FB,195 blastDm2FB,208 chainDm2,452 chainDm2,477 netDm2,422 netDm2,472 joined chainDm2,89 journal rmsk,313 jun geneid,171 june blastDm2FB,40 jurka rmsk,98 rmsk,304 k augustusGene,268 karlin genscan,148 genscan,209 karsch-mizrachi mrna,425 kasif genscan,193 kb gap,111 gap,119 kd-tree chainDm2,363 chainDm2,390 kent blastDm2FB,196 blastDm2FB,209 chainDm2,453 chainDm2,478 chainDm2,498 chainDm2,548 mrna,449 netDm2,423 netDm2,473 netDm2,475 netDm2,517 xenoRefGene,294 kept mrna,399 xenoRefGene,270 known blastDm2FB,29 gap,56 xenoRefGene,15 lab augustusGene,252 label genscan,98 xenoRefGene,101 xenoRefGene,113 xenoRefGene,136 labeled xenoRefGene,106 labels xenoRefGene,78 largely chainDm2,108 largest netDm2,79 least blastDm2FB,140 gap,88 microsat,29 microsat,78 mrna,390 xenoRefGene,261 length augustusGene,82 gap,105 genscan,39 less xenoRefGene,225 level mrna,382 netDm2,74 netDm2,108 netDm2,113 netDm2,120 netDm2,178 netDm2,205 netDm2,218 netDm2,250 rmsk,175 xenoRefGene,62 xenoRefGene,253 libraries rmsk,224 rmsk,297 library rmsk,83 light xenoRefGene,71 lighter rmsk,207 likely augustusGene,111 microsat,17 line gap,65 netDm2,156 rmsk,136 line-up netDm2,223 line-ups netDm2,208 lineage-specific chainDm2,427 netDm2,446 lines chainDm2,96 chainDm2,103 chainDm2,127 netDm2,136 lipman blastDm2FB,175 mrna,427 list mrna,158 local blastDm2FB,178 chainDm2,62 chainDm2,149 located simpleRepeat,21 location chainDm2,214 locations gap,3 gap,76 log-likelihood geneid,111 logic mrna,225 long rmsk,132 rmsk,137 longer chainDm2,32 longest netDm2,201 looking gap,83 low gcPercent,45 rmsk,29 rmsk,152 lower netDm2,177 lower-level netDm2,348 netDm2,354 ltr rmsk,141 m augustusGene,287 augustusGene,289 augustusGene,317 made netDm2,467 make blastDm2FB,78 makes chainDm2,361 many mrna,93 netDm2,87 map chainDm2,242 mapped augustusGene,298 mapping gap,4 gcPercent,9 mar augustusGene,309 mario augustusGene,102 augustusGene,283 markers microsat,23 markov augustusGene,325 geneid,115 masked rmsk,71 match chainDm2,219 mrna,235 mrna,250 mrna,291 mrna,309 netDm2,202 netDm2,240 matched blastDm2FB,138 matches mrna,53 matching chainDm2,222 maximally chainDm2,375 maximizing geneid,132 maximum blastDm2FB,105 maxtracks augustusGene,139 may chainDm2,140 mrna,89 mrna,207 mrna,315 netDm2,116 rmsk,234 rmsk,256 rmsk,266 simpleRepeat,43 medium xenoRefGene,73 mel blastDm2FB,2 chainDm2,2 netDm2,2 melanogaster blastDm2FB,5 blastDm2FB,35 blastDm2FB,54 blastDm2FB,62 chainDm2,5 chainDm2,20 chainDm2,48 chainDm2,72 chainDm2,116 chainDm2,302 chainDm2,350 netDm2,5 netDm2,22 netDm2,48 mellifera augustusGene,216 menu xenoRefGene,174 methods augustusGene,46 blastDm2FB,47 chainDm2,293 geneid,49 genscan,130 genscan,197 microsat,45 mrna,345 netDm2,252 netDm2,261 rmsk,210 simpleRepeat,55 xenoRefGene,208 mica geneid,43 micro-satellites rmsk,151 microsatellite microsat,1 microsat,22 microsatellites microsat,2 miller blastDm2FB,171 chainDm2,421 chainDm2,458 chainDm2,484 chainDm2,504 chainDm2,560 netDm2,440 netDm2,481 netDm2,529 minexonintronprob augustusGene,135 minmeanexonintronprob augustusGene,137 minmei chainDm2,413 netDm2,432 mismatch rmsk,188 mode mrna,44 mrna,74 netDm2,71 rmsk,113 model augustusGene,121 augustusGene,326 geneid,116 genscan,140 modeling genscan,182 models augustusGene,49 augustusGene,65 augustusGene,97 augustusGene,145 augustusGene,178 genscan,158 modes chainDm2,204 modified rmsk,57 mol blastDm2FB,183 genscan,221 molecular genscan,199 more augustusGene,35 blastDm2FB,119 blastDm2FB,162 chainDm2,129 chainDm2,190 gcPercent,40 genscan,50 genscan,125 genscan,163 microsat,96 mrna,49 mrna,121 mrna,217 mrna,338 rmsk,282 simpleRepeat,57 xenoRefGene,178 most augustusGene,93 augustusGene,110 rmsk,215 mouse chainDm2,517 netDm2,494 mrna mrna,9 mrna,14 mrna,129 mrna,362 mrna,402 mrna,409 mrnas mrna,3 mrna,6 mrna,21 mrna,139 mrna,233 mrna,248 mrna,289 mrna,307 mrna,332 mrna,349 much netDm2,375 netDm2,392 multiple chainDm2,163 mrna,365 xenoRefGene,236 mutation chainDm2,150 myers blastDm2FB,173 n gap,91 name chainDm2,280 mrna,147 xenoRefGene,109 xenoRefGene,119 xenoRefGene,124 names chainDm2,208 xenoRefGene,131 native augustusGene,295 natl chainDm2,522 chainDm2,530 netDm2,499 natural netDm2,313 ncbi blastDm2FB,157 xenoRefGene,29 xenoRefGene,290 necessary netDm2,297 nematodes augustusGene,211 net netDm2,3 netDm2,12 netclass netDm2,367 netDm2,410 nets netDm2,465 netsyntenic netDm2,335 netDm2,408 new augustusGene,329 newer rmsk,236 next blastDm2FB,72 chainDm2,259 chainDm2,288 chainDm2,374 geneid,88 nig augustusGene,270 no blastDm2FB,109 microsat,73 non-coding augustusGene,75 xenoRefGene,184 non-d xenoRefGene,3 non-protein-coding xenoRefGene,18 xenoRefGene,192 nonsyn netDm2,238 not mrna,287 netDm2,302 rmsk,272 note rmsk,230 novo augustusGene,304 ns netDm2,382 nuclear rmsk,126 rmsk,134 nucleic microsat,125 mrna,435 simpleRepeat,85 number augustusGene,153 rmsk,203 oacute geneid,24 geneid,40 obtained augustusGene,126 occur simpleRepeat,36 oct augustusGene,334 blastDm2FB,186 of augustusGene,72 augustusGene,84 augustusGene,92 augustusGene,94 augustusGene,154 augustusGene,195 augustusGene,236 blastDm2FB,22 blastDm2FB,38 blastDm2FB,122 blastDm2FB,134 blastDm2FB,142 blastDm2FB,155 chainDm2,148 chainDm2,169 chainDm2,217 chainDm2,271 chainDm2,281 chainDm2,365 chainDm2,371 chainDm2,378 chainDm2,446 chainDm2,468 gap,20 gap,46 gap,52 gap,86 gap,99 gap,108 gcPercent,20 geneid,28 geneid,35 geneid,101 geneid,104 geneid,113 geneid,124 geneid,135 geneid,138 geneid,147 genscan,43 genscan,110 genscan,134 genscan,212 microsat,27 microsat,55 microsat,64 microsat,81 mrna,54 mrna,83 mrna,122 mrna,148 mrna,159 mrna,195 mrna,253 mrna,385 netDm2,29 netDm2,172 netDm2,192 netDm2,376 netDm2,417 netDm2,463 rmsk,39 rmsk,59 rmsk,84 rmsk,122 rmsk,176 rmsk,186 rmsk,204 rmsk,218 rmsk,314 simpleRepeat,40 xenoRefGene,63 xenoRefGene,82 xenoRefGene,96 xenoRefGene,121 xenoRefGene,224 xenoRefGene,256 off chainDm2,250 chainDm2,256 xenoRefGene,134 offers genscan,79 often chainDm2,179 chainDm2,191 ograve geneid,42 on augustusGene,29 augustusGene,37 augustusGene,151 blastDm2FB,164 chainDm2,238 chainDm2,264 gap,49 gap,104 genscan,27 genscan,52 mrna,178 mrna,216 netDm2,140 netDm2,154 netDm2,204 netDm2,209 netDm2,224 netDm2,263 rmsk,74 rmsk,243 one augustusGene,169 chainDm2,156 chainDm2,272 gap,98 mrna,119 mrna,219 mrna,252 netDm2,191 netDm2,290 netDm2,386 only chainDm2,268 microsat,61 mrna,103 mrna,232 mrna,305 mrna,376 xenoRefGene,201 xenoRefGene,247 opposite netDm2,236 option augustusGene,167 augustusGene,187 genscan,94 mrna,342 xenoRefGene,114 xenoRefGene,166 optional xenoRefGene,144 options genscan,85 or blastDm2FB,210 chainDm2,94 chainDm2,118 chainDm2,151 gap,112 mrna,120 mrna,244 mrna,263 mrna,272 netDm2,175 netDm2,358 netDm2,387 xenoRefGene,132 order gap,43 organ mrna,144 mrna,150 organism chainDm2,247 chainDm2,277 organism-specific blastDm2FB,104 organisms netDm2,403 rmsk,261 xenoRefGene,21 organizes chainDm2,342 orientation gap,45 netDm2,237 orthologous netDm2,39 ostell mrna,429 other augustusGene,208 netDm2,102 netDm2,195 rmsk,165 xenoRefGene,1 xenoRefGene,22 ouml augustusGene,269 our augustusGene,43 genscan,58 out chainDm2,364 outputs rmsk,35 over blastDm2FB,118 blastDm2FB,132 chainDm2,165 chainDm2,388 overlapping chainDm2,65 chainDm2,144 p genscan,205 pac chainDm2,491 pack chainDm2,200 page genscan,78 genscan,123 mrna,59 rmsk,77 xenoRefGene,100 pages netDm2,268 pairwise chainDm2,487 paralogs chainDm2,194 parra geneid,157 geneid,178 part blastDm2FB,154 geneid,34 netDm2,28 particular augustusGene,234 chainDm2,167 patterns augustusGene,56 penalty blastDm2FB,111 pennsylvania chainDm2,409 netDm2,428 peptides blastDm2FB,24 percent gcPercent,2 gcPercent,15 percentage gcPercent,3 gcPercent,19 perfect microsat,31 period microsat,65 permitted rmsk,273 place netDm2,287 placed netDm2,329 places mrna,366 xenoRefGene,237 plus geneid,108 pmc chainDm2,544 chainDm2,575 geneid,197 microsat,136 mrna,447 mrna,465 netDm2,513 netDm2,544 simpleRepeat,96 xenoRefGene,310 pmc148217 microsat,137 simpleRepeat,97 pmc187518 mrna,466 xenoRefGene,311 pmc208784 chainDm2,545 netDm2,514 pmc308779 mrna,448 pmc310871 geneid,198 pmc430961 chainDm2,576 netDm2,545 pmid augustusGene,314 augustusGene,339 chainDm2,496 chainDm2,542 chainDm2,573 geneid,176 geneid,195 genscan,229 microsat,134 mrna,445 mrna,463 netDm2,511 netDm2,542 rmsk,324 simpleRepeat,94 xenoRefGene,308 poly-a augustusGene,62 polymorphic microsat,41 simpleRepeat,46 population microsat,44 portion chainDm2,168 position geneid,84 possible netDm2,96 possibly simpleRepeat,18 pre-mrna genscan,185 predict geneid,55 predicted blastDm2FB,27 blastDm2FB,49 geneid,77 geneid,125 xenoRefGene,70 prediction augustusGene,321 genscan,73 genscan,211 xenoRefGene,55 predictions augustusGene,6 augustusGene,11 augustusGene,18 augustusGene,26 augustusGene,191 blastDm2FB,15 geneid,5 geneid,9 geneid,15 genscan,5 genscan,9 genscan,14 genscan,24 genscan,112 genscan,118 xenoRefGene,10 xenoRefGene,157 present rmsk,44 proc chainDm2,521 netDm2,498 process gap,30 netDm2,311 processed chainDm2,182 processing geneid,30 geneid,149 produce blastDm2FB,202 produced mrna,405 xenoRefGene,275 program augustusGene,21 augustusGene,257 blastDm2FB,67 blastDm2FB,92 chainDm2,387 chainDm2,436 chainDm2,440 geneid,19 geneid,53 genscan,18 genscan,137 genscan,178 microsat,100 microsat,120 mrna,358 netDm2,281 netDm2,334 netDm2,366 netDm2,455 rmsk,20 rmsk,34 simpleRepeat,62 simpleRepeat,80 programs netDm2,411 project xenoRefGene,292 protein blastDm2FB,125 blastDm2FB,144 protein-coding augustusGene,73 xenoRefGene,16 xenoRefGene,190 proteins blastDm2FB,3 blastDm2FB,11 blastDm2FB,50 protoc geneid,168 providing augustusGene,254 geneid,151 genscan,175 rmsk,292 provisional xenoRefGene,72 pseudogenes chainDm2,183 chainDm2,197 psl mrna,38 public mrna,416 publicly rmsk,241 pull-down xenoRefGene,173 purpose simpleRepeat,32 put chainDm2,321 putative blastDm2FB,95 pwas geneid,87 quality mrna,56 query blastDm2FB,124 blastDm2FB,136 rmsk,47 rmsk,61 quickly mrna,330 xenoRefGene,152 quite simpleRepeat,45 quot chainDm2,54 chainDm2,56 chainDm2,255 chainDm2,257 mrna,187 mrna,189 mrna,227 mrna,229 mrna,243 mrna,245 mrna,279 mrna,281 mrna,296 mrna,298 r augustusGene,291 chainDm2,501 chainDm2,555 chainDm2,557 geneid,161 geneid,184 netDm2,478 netDm2,524 r4 blastDm2FB,9 chainDm2,9 chainDm2,80 netDm2,9 netDm2,60 random augustusGene,119 raney blastDm2FB,212 ranked netDm2,278 ratio geneid,112 rc netDm2,526 rmsk,170 rearrangement chainDm2,514 netDm2,45 netDm2,182 netDm2,491 record xenoRefGene,67 refer genscan,144 reference xenoRefGene,31 references augustusGene,285 chainDm2,479 geneid,154 genscan,152 genscan,179 microsat,113 mrna,422 netDm2,474 rmsk,103 rmsk,303 simpleRepeat,73 xenoRefGene,293 reflects rmsk,183 refseq xenoRefGene,2 xenoRefGene,5 xenoRefGene,34 xenoRefGene,66 xenoRefGene,291 region netDm2,85 regions augustusGene,76 chainDm2,101 genscan,48 microsat,14 netDm2,40 simpleRepeat,39 regulaci geneid,39 related augustusGene,242 relationship netDm2,344 relative gap,42 netDm2,360 relevant mrna,106 remaining blastDm2FB,198 chainDm2,399 removed chainDm2,307 repbase rmsk,81 rmsk,93 rmsk,306 repeat microsat,83 rmsk,139 rmsk,146 rmsk,197 rmsk,223 rmsk,296 simpleRepeat,47 repeating rmsk,2 repeatmasker chainDm2,437 netDm2,456 rmsk,1 rmsk,5 rmsk,19 rmsk,78 rmsk,220 rmsk,251 repeats chainDm2,428 microsat,6 microsat,9 microsat,35 microsat,58 microsat,63 microsat,86 microsat,93 microsat,106 microsat,117 netDm2,447 rmsk,8 rmsk,27 rmsk,41 rmsk,68 rmsk,85 rmsk,123 rmsk,150 rmsk,154 rmsk,156 rmsk,158 rmsk,166 rmsk,262 rmsk,269 simpleRepeat,2 simpleRepeat,5 simpleRepeat,10 simpleRepeat,17 simpleRepeat,20 simpleRepeat,24 simpleRepeat,34 simpleRepeat,77 repetitive rmsk,315 represent chainDm2,99 chainDm2,128 netDm2,132 netDm2,137 represented gap,33 rmsk,49 representing gap,72 required blastDm2FB,200 res chainDm2,567 geneid,189 microsat,127 mrna,437 mrna,457 netDm2,536 simpleRepeat,87 xenoRefGene,302 research rmsk,90 result chainDm2,141 resulting chainDm2,310 chainDm2,327 chainDm2,336 retroposons rmsk,144 review xenoRefGene,64 reviewed xenoRefGene,74 rna geneid,29 geneid,148 rmsk,157 rmsk,160 xenoRefGene,30 xenoRefGene,233 xenoRefGene,279 rnas xenoRefGene,210 robert chainDm2,474 netDm2,469 roderic geneid,22 rolling rmsk,171 ross chainDm2,425 netDm2,444 rrna rmsk,162 running chainDm2,384 s augustusGene,104 augustusGene,221 augustusGene,319 blastDm2FB,145 chainDm2,509 chainDm2,534 chainDm2,547 geneid,25 genscan,190 genscan,194 genscan,210 netDm2,486 netDm2,503 netDm2,516 rmsk,18 rmsk,252 saccharomyces augustusGene,223 salzberg genscan,189 same netDm2,211 netDm2,226 sample augustusGene,133 sampling augustusGene,129 santa chainDm2,449 netDm2,419 satellite rmsk,155 scaffold gap,114 schwartz chainDm2,416 chainDm2,546 netDm2,435 netDm2,515 sci chainDm2,524 chainDm2,532 netDm2,501 science genscan,203 scientists mrna,420 xenoRefGene,284 scored geneid,79 geneid,97 scores geneid,103 geneid,137 scoring chainDm2,28 chainDm2,38 chainDm2,376 chainDm2,392 chainDm2,486 scott chainDm2,415 netDm2,434 screens rmsk,22 scrna rmsk,164 search blastDm2FB,180 searls genscan,191 section genscan,153 rmsk,104 sections netDm2,301 see augustusGene,42 blastDm2FB,166 genscan,57 microsat,101 rmsk,278 simpleRepeat,63 xenoRefGene,200 select genscan,90 xenoRefGene,162 selected mrna,231 mrna,247 mrna,300 selecting microsat,60 semi-markov augustusGene,117 sep chainDm2,537 netDm2,506 rmsk,320 sequence augustusGene,32 augustusGene,70 blastDm2FB,46 blastDm2FB,88 chainDm2,73 chainDm2,135 chainDm2,489 gap,81 geneid,82 mrna,336 mrna,397 mrna,410 mrna,417 netDm2,49 rmsk,48 rmsk,62 xenoRefGene,268 xenoRefGene,280 sequences blastDm2FB,76 geneid,60 microsat,26 microsat,124 rmsk,24 rmsk,32 simpleRepeat,84 xenoRefGene,32 sequencing gap,6 gcPercent,11 netDm2,383 set blastDm2FB,160 geneid,123 sets augustusGene,158 sf blastDm2FB,168 shaded mrna,51 shading rmsk,178 rmsk,209 xenoRefGene,59 short rmsk,124 should mrna,267 show xenoRefGene,125 shown microsat,48 mrna,96 shows augustusGene,15 augustusGene,108 chainDm2,18 gcPercent,17 geneid,13 genscan,13 mrna,16 netDm2,18 xenoRefGene,14 side gap,51 signal augustusGene,48 augustusGene,63 signals genscan,34 genscan,187 simple microsat,57 microsat,85 rmsk,149 simpleRepeat,1 simpleRepeat,3 simpleRepeat,15 simultaneously chainDm2,52 since chainDm2,299 sine rmsk,128 single blastDm2FB,113 chainDm2,93 chainDm2,102 chainDm2,348 chainDm2,353 mrna,361 xenoRefGene,232 single-lined chainDm2,176 site genscan,157 sites augustusGene,54 augustusGene,59 geneid,71 geneid,94 geneid,107 size blastDm2FB,107 gap,109 gap,121 smit chainDm2,433 chainDm2,550 netDm2,452 netDm2,519 rmsk,17 rmsk,288 snrna rmsk,163 so netDm2,124 soft-masked rmsk,264 software rmsk,221 some mrna,104 sometimes simpleRepeat,50 sorted netDm2,270 spain geneid,48 span netDm2,83 specialized simpleRepeat,29 species augustusGene,166 augustusGene,173 augustusGene,181 augustusGene,186 augustusGene,200 augustusGene,229 augustusGene,244 chainDm2,69 chainDm2,138 chainDm2,157 netDm2,389 species-specific augustusGene,156 specific mrna,143 simpleRepeat,53 splice augustusGene,53 geneid,70 genscan,156 splicing augustusGene,123 genscan,33 genscan,186 split chainDm2,305 stanke augustusGene,103 augustusGene,251 augustusGene,284 augustusGene,286 augustusGene,316 start augustusGene,58 geneid,72 state chainDm2,410 netDm2,429 statistical augustusGene,47 stefanie augustusGene,267 step geneid,69 stop geneid,74 storage chainDm2,467 netDm2,462 strand chainDm2,212 stretches gap,85 structure augustusGene,113 geneid,65 geneid,129 structures augustusGene,164 genscan,215 studying netDm2,43 submitted mrna,412 submodel augustusGene,331 subsections chainDm2,369 subset microsat,54 mrna,82 substantial chainDm2,134 such netDm2,350 sum geneid,100 geneid,134 suppl augustusGene,336 symp chainDm2,492 syn netDm2,207 syntenic netDm2,357 syntenically augustusGene,297 system chainDm2,29 systems chainDm2,39 table augustusGene,225 mrna,168 mrna,171 mrna,190 taken xenoRefGene,26 tandem microsat,92 microsat,105 microsat,116 simpleRepeat,4 simpleRepeat,16 simpleRepeat,23 simpleRepeat,76 task mrna,110 tblastn blastDm2FB,20 blastDm2FB,91 blastDm2FB,152 temperature augustusGene,141 ten rmsk,119 tend microsat,37 term mrna,117 terminal rmsk,138 terms mrna,161 text mrna,124 mrna,164 mrna,204 than blastDm2FB,120 chainDm2,34 gap,117 gcPercent,42 mrna,218 netDm2,196 rmsk,237 xenoRefGene,23 xenoRefGene,226 thanks augustusGene,248 geneid,143 genscan,170 rmsk,285 that blastDm2FB,77 blastDm2FB,130 chainDm2,30 chainDm2,106 chainDm2,132 chainDm2,282 chainDm2,295 genscan,141 microsat,15 mrna,47 mrna,66 mrna,173 mrna,197 mrna,234 mrna,249 mrna,266 mrna,290 mrna,308 mrna,325 netDm2,82 netDm2,104 netDm2,320 netDm2,331 rmsk,42 rmsk,231 rmsk,239 xenoRefGene,148 the augustusGene,20 augustusGene,25 augustusGene,30 augustusGene,38 augustusGene,61 augustusGene,69 augustusGene,81 augustusGene,109 augustusGene,143 augustusGene,165 augustusGene,172 augustusGene,177 augustusGene,185 augustusGene,240 augustusGene,250 augustusGene,255 augustusGene,258 augustusGene,261 augustusGene,272 augustusGene,275 blastDm2FB,23 blastDm2FB,26 blastDm2FB,33 blastDm2FB,43 blastDm2FB,52 blastDm2FB,60 blastDm2FB,65 blastDm2FB,73 blastDm2FB,85 blastDm2FB,90 blastDm2FB,94 blastDm2FB,112 blastDm2FB,123 blastDm2FB,135 blastDm2FB,143 blastDm2FB,156 blastDm2FB,197 chainDm2,70 chainDm2,76 chainDm2,84 chainDm2,97 chainDm2,114 chainDm2,122 chainDm2,170 chainDm2,199 chainDm2,205 chainDm2,210 chainDm2,218 chainDm2,230 chainDm2,245 chainDm2,251 chainDm2,254 chainDm2,269 chainDm2,275 chainDm2,279 chainDm2,300 chainDm2,309 chainDm2,317 chainDm2,324 chainDm2,326 chainDm2,335 chainDm2,344 chainDm2,367 chainDm2,372 chainDm2,389 chainDm2,398 chainDm2,438 chainDm2,444 chainDm2,462 chainDm2,469 chainDm2,516 gap,13 gap,18 gap,28 gap,41 gap,47 gap,53 gap,69 gap,73 gap,80 gcPercent,13 gcPercent,18 geneid,17 geneid,36 geneid,67 geneid,81 geneid,93 geneid,99 geneid,102 geneid,105 geneid,109 geneid,110 geneid,122 geneid,127 geneid,133 geneid,136 geneid,139 genscan,16 genscan,23 genscan,38 genscan,53 genscan,68 genscan,75 genscan,80 genscan,91 genscan,115 genscan,135 genscan,139 genscan,151 genscan,155 genscan,176 microsat,43 microsat,46 microsat,56 microsat,82 microsat,84 microsat,91 mrna,13 mrna,25 mrna,34 mrna,45 mrna,57 mrna,72 mrna,76 mrna,86 mrna,98 mrna,108 mrna,113 mrna,123 mrna,128 mrna,135 mrna,146 mrna,149 mrna,152 mrna,157 mrna,167 mrna,170 mrna,176 mrna,186 mrna,193 mrna,202 mrna,212 mrna,222 mrna,254 mrna,261 mrna,275 mrna,284 mrna,292 mrna,301 mrna,310 mrna,327 mrna,334 mrna,353 mrna,356 mrna,367 mrna,370 mrna,386 mrna,395 mrna,401 mrna,414 mrna,452 netDm2,19 netDm2,30 netDm2,46 netDm2,56 netDm2,72 netDm2,78 netDm2,92 netDm2,110 netDm2,127 netDm2,130 netDm2,135 netDm2,148 netDm2,161 netDm2,163 netDm2,170 netDm2,173 netDm2,180 netDm2,186 netDm2,199 netDm2,210 netDm2,214 netDm2,217 netDm2,225 netDm2,229 netDm2,235 netDm2,246 netDm2,249 netDm2,260 netDm2,264 netDm2,272 netDm2,276 netDm2,280 netDm2,288 netDm2,333 netDm2,343 netDm2,362 netDm2,365 netDm2,377 netDm2,401 netDm2,406 netDm2,415 netDm2,457 netDm2,464 netDm2,493 rmsk,33 rmsk,40 rmsk,46 rmsk,60 rmsk,66 rmsk,75 rmsk,80 rmsk,87 rmsk,102 rmsk,174 rmsk,180 rmsk,184 rmsk,199 rmsk,201 rmsk,206 rmsk,208 rmsk,214 rmsk,219 rmsk,244 rmsk,250 rmsk,279 rmsk,293 simpleRepeat,60 xenoRefGene,28 xenoRefGene,35 xenoRefGene,50 xenoRefGene,57 xenoRefGene,61 xenoRefGene,65 xenoRefGene,76 xenoRefGene,91 xenoRefGene,94 xenoRefGene,97 xenoRefGene,111 xenoRefGene,117 xenoRefGene,122 xenoRefGene,127 xenoRefGene,135 xenoRefGene,163 xenoRefGene,168 xenoRefGene,189 xenoRefGene,202 xenoRefGene,209 xenoRefGene,214 xenoRefGene,238 xenoRefGene,241 xenoRefGene,257 xenoRefGene,266 xenoRefGene,289 xenoRefGene,297 them netDm2,295 rmsk,277 then chainDm2,320 netDm2,284 netDm2,369 there chainDm2,161 these augustusGene,95 augustusGene,190 chainDm2,53 chainDm2,379 gap,15 gap,100 geneid,152 microsat,24 netDm2,97 rmsk,205 rmsk,228 rmsk,232 simpleRepeat,33 they chainDm2,241 this augustusGene,13 augustusGene,106 augustusGene,224 blastDm2FB,17 blastDm2FB,203 chainDm2,16 chainDm2,139 gap,8 gap,38 gcPercent,58 geneid,11 genscan,11 genscan,65 genscan,128 microsat,11 microsat,50 microsat,99 mrna,31 mrna,61 mrna,88 mrna,313 mrna,341 netDm2,16 netDm2,52 netDm2,84 netDm2,310 rmsk,10 rmsk,51 rmsk,114 rmsk,301 simpleRepeat,12 simpleRepeat,31 xenoRefGene,12 xenoRefGene,38 xenoRefGene,47 xenoRefGene,85 xenoRefGene,140 xenoRefGene,181 xenoRefGene,206 xenoRefGene,272 those microsat,62 mrna,306 rmsk,238 xenoRefGene,220 thousands chainDm2,216 threshold chainDm2,395 through gap,68 rmsk,268 xenoRefGene,90 time netDm2,293 tissue mrna,153 mrna,188 mrna,203 tissues mrna,196 to augustusGene,115 augustusGene,170 augustusGene,249 augustusGene,301 blastDm2FB,42 blastDm2FB,68 blastDm2FB,201 chainDm2,110 chainDm2,181 chainDm2,193 chainDm2,232 chainDm2,243 chainDm2,248 chainDm2,260 chainDm2,266 chainDm2,289 gap,96 geneid,54 geneid,144 geneid,164 genscan,95 genscan,105 genscan,114 genscan,145 genscan,171 microsat,18 microsat,38 microsat,121 mrna,70 mrna,107 mrna,111 mrna,126 mrna,133 mrna,137 mrna,155 mrna,175 mrna,182 mrna,270 mrna,319 mrna,329 mrna,413 netDm2,143 netDm2,157 netDm2,241 netDm2,286 netDm2,298 netDm2,338 netDm2,361 netDm2,371 rmsk,118 rmsk,226 rmsk,274 rmsk,286 rmsk,299 simpleRepeat,81 xenoRefGene,115 xenoRefGene,151 xenoRefGene,158 xenoRefGene,199 together blastDm2FB,101 chainDm2,90 tolerate chainDm2,43 tool blastDm2FB,159 blastDm2FB,181 mrna,455 xenoRefGene,300 tools rmsk,294 top netDm2,198 xenoRefGene,95 top-level netDm2,73 netDm2,93 track augustusGene,14 augustusGene,107 blastDm2FB,18 blastDm2FB,56 blastDm2FB,204 chainDm2,17 chainDm2,86 chainDm2,262 gap,9 gap,39 gcPercent,16 gcPercent,59 geneid,12 genscan,12 genscan,66 genscan,76 genscan,87 microsat,12 microsat,51 microsat,59 microsat,87 mrna,15 mrna,32 mrna,62 mrna,87 mrna,99 mrna,314 mrna,403 netDm2,17 rmsk,11 rmsk,52 rmsk,115 rmsk,302 simpleRepeat,13 xenoRefGene,13 xenoRefGene,39 xenoRefGene,48 xenoRefGene,86 xenoRefGene,98 xenoRefGene,141 xenoRefGene,170 xenoRefGene,273 tracks augustusGene,41 genscan,56 genscan,74 mrna,40 netDm2,266 xenoRefGene,56 traditional chainDm2,35 trained augustusGene,150 training augustusGene,162 augustusGene,176 augustusGene,180 augustusGene,199 augustusGene,228 augustusGene,243 augustusGene,259 augustusGene,273 transcriptional genscan,28 transcripts augustusGene,124 translation augustusGene,57 translational genscan,29 transposons chainDm2,294 chainDm2,318 netDm2,396 trends rmsk,317 trf simpleRepeat,7 simpleRepeat,26 simpleRepeat,61 simpleRepeat,67 tri-nucleotide microsat,5 microsat,34 trimming netDm2,294 trna rmsk,161 true augustusGene,132 turn chainDm2,249 xenoRefGene,133 two gap,101 netDm2,402 type mrna,115 mrna,145 types augustusGene,89 gap,102 mrna,194 netDm2,194 typically gcPercent,52 u chainDm2,533 netDm2,502 ucsc gcPercent,63 mrna,407 rmsk,211 xenoRefGene,277 undergone xenoRefGene,69 underlies genscan,142 underlying xenoRefGene,37 underneath netDm2,330 ungapped netDm2,133 unit geneid,174 university chainDm2,411 chainDm2,445 netDm2,416 netDm2,430 unknown rmsk,173 unprocessed chainDm2,196 unsequenced chainDm2,153 up blastDm2FB,79 rmsk,117 update mrna,434 rmsk,82 rmsk,94 rmsk,307 updated xenoRefGene,41 usa chainDm2,525 use mrna,112 used augustusGene,146 augustusGene,174 augustusGene,183 augustusGene,231 augustusGene,246 genscan,159 mrna,69 mrna,210 mrna,269 netDm2,50 netDm2,285 netDm2,337 netDm2,370 rmsk,213 rmsk,258 rmsk,298 useful microsat,20 netDm2,36 netDm2,167 user mrna,328 users xenoRefGene,150 uses rmsk,79 using augustusGene,294 blastDm2FB,64 blastDm2FB,89 blastDm2FB,102 chainDm2,25 geneid,83 geneid,162 microsat,90 mrna,355 netDm2,259 rmsk,15 rmsk,249 xenoRefGene,218 utilities blastDm2FB,199 v3.1 augustusGene,7 valid mrna,160 validate xenoRefGene,153 validation genscan,107 value mrna,220 variation microsat,7 rmsk,6 simpleRepeat,8 vb chainDm2,483 version augustusGene,23 augustusGene,263 rmsk,58 versions augustusGene,279 rmsk,217 rmsk,233 vertebrates augustusGene,209 view mrna,156 netDm2,144 virilis blastDm2FB,45 blastDm2FB,87 blastDm2FB,97 chainDm2,22 chainDm2,51 chainDm2,124 chainDm2,172 chainDm2,304 chainDm2,355 mrna,2 mrna,5 mrna,20 mrna,348 netDm2,24 netDm2,32 xenoRefGene,4 xenoRefGene,25 xenoRefGene,216 w blastDm2FB,170 blastDm2FB,172 chainDm2,485 chainDm2,505 chainDm2,561 netDm2,482 netDm2,530 waack augustusGene,318 was augustusGene,230 augustusGene,245 augustusGene,264 augustusGene,280 blastDm2FB,192 chainDm2,406 chainDm2,441 gcPercent,60 microsat,108 mrna,374 mrna,404 netDm2,283 netDm2,328 netDm2,336 netDm2,356 netDm2,368 netDm2,393 netDm2,425 rmsk,12 simpleRepeat,68 xenoRefGene,245 xenoRefGene,274 webb chainDm2,420 chainDm2,457 netDm2,439 weekly xenoRefGene,42 weight geneid,85 well augustusGene,78 genscan,36 rmsk,54 were augustusGene,50 augustusGene,66 augustusGene,125 augustusGene,149 augustusGene,182 blastDm2FB,57 blastDm2FB,82 blastDm2FB,99 blastDm2FB,126 blastDm2FB,148 blastDm2FB,205 chainDm2,306 chainDm2,313 chainDm2,319 chainDm2,329 chainDm2,381 chainDm2,396 chainDm2,429 chainDm2,471 gap,77 gap,94 mrna,350 mrna,398 netDm2,254 netDm2,412 netDm2,448 netDm2,466 xenoRefGene,211 xenoRefGene,228 xenoRefGene,269 wheeler mrna,431 when augustusGene,188 augustusGene,238 mrna,92 mrna,102 mrna,359 netDm2,95 xenoRefGene,230 where chainDm2,160 whether netDm2,352 which augustusGene,159 augustusGene,227 chainDm2,239 geneid,32 mrna,179 netDm2,317 rmsk,21 rmsk,64 rmsk,129 rmsk,142 rmsk,167 simpleRepeat,27 while chainDm2,184 white gap,64 whole netDm2,152 wildcards mrna,206 will gap,24 mrna,239 mrna,257 mrna,286 mrna,303 window gcPercent,32 windows gcPercent,8 gcPercent,33 gcPercent,43 wish mrna,181 xenoRefGene,198 with augustusGene,127 augustusGene,322 blastDm2FB,59 blastDm2FB,84 chainDm2,175 chainDm2,186 chainDm2,315 chainDm2,422 chainDm2,454 chainDm2,564 gap,17 gcPercent,34 gcPercent,44 gcPercent,54 geneid,62 microsat,69 microsat,76 mrna,394 netDm2,271 netDm2,395 netDm2,441 netDm2,533 rmsk,195 simpleRepeat,52 xenoRefGene,221 xenoRefGene,265 within mrna,85 mrna,383 simpleRepeat,37 xenoRefGene,84 xenoRefGene,254 wj chainDm2,499 chainDm2,549 mrna,450 netDm2,476 netDm2,518 xenoRefGene,295 worldwide mrna,421 xenoRefGene,285 written blastDm2FB,193 blastDm2FB,206 genscan,19 microsat,109 simpleRepeat,69 yap chainDm2,482 you mrna,180 xenoRefGene,197 z chainDm2,553 netDm2,522 zebrafish augustusGene,202 augustusGene,278 zhang chainDm2,418 chainDm2,552 netDm2,437 netDm2,521 zheng chainDm2,417 netDm2,436 zoomed-in genscan,103