0.2 augustusGene,136 0.5 augustusGene,138 est,677 intronEst,752 mrna,393 xenoRefGene,264 000 est,637 gcPercent,30 intronEst,712 000-base gcPercent,7 1 augustusGene,310 blastzCe2,325 chainCe2,561 est,732 gold,108 gold,109 intronEst,810 mrna,449 twinscan,178 xenoRefGene,387 100 augustusGene,134 chainCe2,529 microsat,70 1000-2000 augustusGene,161 103-7 blastzCe2,326 chainCe2,562 11473003 twinscan,181 11484-9 chainCe2,531 115-26 blastzCe2,297 chainCe2,493 11928468 blastzCe2,299 chainCe2,495 11932250 est,756 intronEst,834 mrna,473 xenoRefGene,317 12 est,752 intronEst,830 mrna,469 xenoRefGene,313 12529312 blastzCe2,328 chainCe2,564 13 blastzCe2,324 chainCe2,560 14500911 chainCe2,533 14534192 augustusGene,340 14681350 est,738 intronEst,816 mrna,455 15 microsat,30 microsat,79 microsat,130 simpleRepeat,90 xenoRefGene,236 15608248 xenoRefGene,393 16 rmsk,328 17 twinscan,176 18218656 augustusGene,315 19 augustusGene,335 1999 microsat,103 microsat,128 simpleRepeat,65 simpleRepeat,88 2 augustusGene,142 augustusGene,337 microsat,66 microsat,132 simpleRepeat,92 2.05 gold,25 20 chainCe2,530 gcPercent,6 gcPercent,29 2000 rmsk,100 rmsk,326 2001 twinscan,134 twinscan,175 2002 blastzCe2,296 chainCe2,492 est,750 intronEst,828 mrna,467 xenoRefGene,311 2003 augustusGene,333 blastzCe2,322 chainCe2,526 chainCe2,558 2004 blastzCe2,6 blastzCe2,25 chainCe2,6 chainCe2,23 est,730 intronEst,808 mrna,447 2005 xenoRefGene,385 2008 augustusGene,308 2014 xenoRefGene,352 24 augustusGene,311 24259432 xenoRefGene,359 25 xenoRefGene,271 27 microsat,131 simpleRepeat,91 3 augustusGene,140 est,449 est,502 est,556 intronEst,108 intronEst,524 intronEst,577 intronEst,631 microsat,68 3.1 augustusGene,24 30 chainCe2,528 32 est,733 intronEst,78 intronEst,811 mrna,450 33 xenoRefGene,388 4 est,753 intronEst,831 mrna,470 xenoRefGene,314 418-420 rmsk,330 42 xenoRefGene,354 5 augustusGene,312 est,446 est,487 est,513 intronEst,521 intronEst,562 intronEst,588 500 est,35 intronEst,46 573-80 microsat,133 simpleRepeat,93 6 blastzCe2,241 637-44 augustusGene,313 656-64 est,754 intronEst,832 mrna,471 xenoRefGene,315 750 est,636 intronEst,711 9 rmsk,329 96 est,684 intronEst,759 mrna,400 9862982 microsat,135 simpleRepeat,95 a augustusGene,116 augustusGene,128 augustusGene,152 augustusGene,215 augustusGene,218 augustusGene,233 augustusGene,323 augustusGene,328 blastzCe2,85 blastzCe2,206 blastzCe2,305 chainCe2,32 chainCe2,103 chainCe2,157 chainCe2,342 chainCe2,348 chainCe2,354 chainCe2,358 chainCe2,369 chainCe2,390 chainCe2,501 chainCe2,525 chainCe2,541 est,118 est,135 est,170 est,196 est,377 est,436 est,440 est,566 est,592 est,600 est,653 est,672 gap,59 gap,63 gap,90 gap,96 gap,99 gcPercent,28 gold,92 gold,181 gold,187 intronEst,111 intronEst,145 intronEst,193 intronEst,210 intronEst,245 intronEst,271 intronEst,452 intronEst,511 intronEst,515 intronEst,641 intronEst,667 intronEst,675 intronEst,728 intronEst,747 microsat,53 microsat,119 mrna,64 mrna,81 mrna,116 mrna,142 mrna,323 mrna,369 mrna,388 rmsk,36 rmsk,56 rmsk,196 rmsk,315 simpleRepeat,79 twinscan,23 twinscan,44 twinscan,94 xenoRefGene,240 xenoRefGene,259 xenoRefGene,329 xenoRefGene,372 ab augustusGene,3 augustusGene,16 abbreviated chainCe2,304 about est,34 est,403 intronEst,45 intronEst,478 microsat,98 mrna,340 simpleRepeat,59 twinscan,120 xenoRefGene,178 abundance chainCe2,139 acad chainCe2,521 accessed blastzCe2,123 accession xenoRefGene,118 xenoRefGene,130 according augustusGene,114 accuracy twinscan,40 acids est,728 intronEst,806 microsat,126 mrna,445 simpleRepeat,86 xenoRefGene,350 xenoRefGene,383 activate blastzCe2,57 activated blastzCe2,173 added chainCe2,315 additional rmsk,254 advantage twinscan,32 advice chainCe2,421 chainCe2,453 affine chainCe2,42 ag intronEst,85 against est,621 intronEst,37 intronEst,696 mrna,333 mrna,361 xenoRefGene,222 al twinscan,133 xenoRefGene,341 algorithm augustusGene,130 twinscan,126 align chainCe2,155 est,651 intronEst,726 aligned chainCe2,307 est,620 est,656 intronEst,36 intronEst,149 intronEst,695 intronEst,731 mrna,360 mrna,372 xenoRefGene,221 xenoRefGene,243 aligning blastzCe2,54 blastzCe2,191 blastzCe2,211 chainCe2,92 chainCe2,238 chainCe2,268 est,389 intronEst,464 alignment blastzCe2,197 chainCe2,215 est,58 est,412 est,661 est,746 intronEst,136 intronEst,487 intronEst,736 intronEst,824 mrna,39 mrna,351 mrna,377 mrna,463 xenoRefGene,232 xenoRefGene,248 xenoRefGene,307 alignments augustusGene,300 blastzCe2,17 blastzCe2,42 blastzCe2,204 blastzCe2,238 blastzCe2,259 blastzCe2,292 blastzCe2,317 chainCe2,10 chainCe2,17 chainCe2,320 chainCe2,332 chainCe2,340 chainCe2,368 chainCe2,488 chainCe2,553 est,16 est,670 intronEst,17 intronEst,745 mrna,17 mrna,386 rmsk,265 xenoRefGene,257 all augustusGene,207 chainCe2,339 est,192 est,246 est,290 est,385 est,456 gold,199 intronEst,114 intronEst,267 intronEst,321 intronEst,365 intronEst,460 intronEst,531 mrna,138 mrna,192 mrna,236 rmsk,65 allowed est,632 intronEst,707 allows augustusGene,168 chainCe2,37 est,380 intronEst,455 mrna,326 xenoRefGene,149 alone augustusGene,33 along gold,87 gold,104 gold,125 also chainCe2,48 est,262 est,370 est,569 intronEst,337 intronEst,445 intronEst,644 mrna,208 mrna,316 alter est,129 intronEst,204 mrna,75 alternating gold,153 alternative augustusGene,122 alternatives-from-sampling augustusGene,131 alus rmsk,131 always gold,184 amount rmsk,185 an blastzCe2,36 chainCe2,111 chainCe2,138 chainCe2,144 est,418 est,465 est,548 intronEst,61 intronEst,493 intronEst,540 intronEst,623 rmsk,318 xenoRefGene,143 xenoRefGene,231 xenoRefGene,343 analyze microsat,122 simpleRepeat,82 and augustusGene,9 augustusGene,60 augustusGene,74 augustusGene,87 augustusGene,206 augustusGene,271 augustusGene,277 augustusGene,296 augustusGene,327 chainCe2,55 chainCe2,70 chainCe2,187 chainCe2,193 chainCe2,205 chainCe2,218 chainCe2,310 chainCe2,347 chainCe2,356 chainCe2,417 chainCe2,432 chainCe2,457 chainCe2,463 chainCe2,474 chainCe2,511 chainCe2,516 est,10 est,26 est,48 est,88 est,132 est,282 est,425 est,439 est,447 est,575 est,681 gap,5 gap,44 gap,62 gcPercent,10 gcPercent,23 gold,6 gold,118 gold,121 gold,155 gold,169 gold,175 intronEst,11 intronEst,27 intronEst,82 intronEst,126 intronEst,163 intronEst,207 intronEst,357 intronEst,500 intronEst,514 intronEst,522 intronEst,650 intronEst,756 microsat,4 microsat,8 microsat,33 microsat,36 microsat,67 microsat,72 microsat,75 mrna,10 mrna,24 mrna,29 mrna,78 mrna,228 mrna,347 mrna,397 rmsk,7 rmsk,28 rmsk,108 rmsk,191 rmsk,222 rmsk,291 rmsk,297 rmsk,317 simpleRepeat,9 simpleRepeat,42 twinscan,13 twinscan,43 twinscan,55 twinscan,75 twinscan,89 twinscan,100 xenoRefGene,8 xenoRefGene,17 xenoRefGene,45 xenoRefGene,79 xenoRefGene,129 xenoRefGene,154 xenoRefGene,187 xenoRefGene,200 xenoRefGene,268 xenoRefGene,295 xenoRefGene,380 annotated rmsk,67 annotation blastzCe2,180 rmsk,38 annotations xenoRefGene,188 any est,305 est,518 intronEst,380 intronEst,593 mrna,251 apply est,188 intronEst,263 mrna,134 appropriate xenoRefGene,112 apr est,751 intronEst,829 mrna,468 xenoRefGene,312 are augustusGene,27 blastzCe2,50 chainCe2,99 chainCe2,170 chainCe2,181 chainCe2,227 chainCe2,397 est,30 est,67 est,149 est,159 gap,32 gcPercent,38 gold,147 gold,164 gold,204 intronEst,41 intronEst,224 intronEst,234 intronEst,766 microsat,16 microsat,25 microsat,52 mrna,48 mrna,95 mrna,105 rmsk,43 rmsk,240 rmsk,247 rmsk,263 rmsk,271 simpleRepeat,49 xenoRefGene,40 xenoRefGene,105 xenoRefGene,203 areas gcPercent,56 arian chainCe2,430 rmsk,16 rmsk,287 as augustusGene,77 augustusGene,79 est,565 gap,34 intronEst,640 microsat,21 rmsk,53 rmsk,55 assembled gold,23 gold,60 assembler gold,36 assemblies augustusGene,196 augustusGene,237 chainCe2,226 chainCe2,302 assembly augustusGene,197 blastzCe2,22 blastzCe2,55 blastzCe2,193 blastzCe2,212 chainCe2,109 chainCe2,117 gap,14 gap,76 gold,1 gold,2 gold,14 associated est,110 gcPercent,53 intronEst,185 rmsk,194 simpleRepeat,51 astashyn xenoRefGene,328 at blastzCe2,113 chainCe2,406 chainCe2,441 chainCe2,446 est,517 est,562 est,682 est,698 gcPercent,62 intronEst,67 intronEst,76 intronEst,101 intronEst,592 intronEst,637 intronEst,757 intronEst,776 microsat,28 microsat,77 mrna,398 mrna,415 twinscan,50 twinscan,149 xenoRefGene,93 xenoRefGene,269 xenoRefGene,285 attempt est,549 intronEst,624 augustus augustusGene,1 augustusGene,2 augustusGene,22 augustusGene,148 augustusGene,256 available augustusGene,239 rmsk,73 rmsk,225 rmsk,242 axt chainCe2,324 chainCe2,331 axtbest blastzCe2,279 axtchain chainCe2,336 chainCe2,437 back chainCe2,316 baertsch augustusGene,290 blastzCe2,308 chainCe2,473 chainCe2,498 chainCe2,544 base est,375 est,409 est,665 est,673 est,685 gcPercent,31 intronEst,450 intronEst,484 intronEst,740 intronEst,748 intronEst,760 mrna,348 mrna,381 mrna,389 mrna,401 rmsk,187 rmsk,189 rmsk,192 xenoRefGene,252 xenoRefGene,260 xenoRefGene,272 based augustusGene,28 blastzCe2,70 blastzCe2,164 chainCe2,229 chainCe2,255 gold,42 gold,64 bases est,36 est,386 est,638 gcPercent,26 intronEst,47 intronEst,79 intronEst,461 intronEst,713 be augustusGene,99 blastzCe2,89 blastzCe2,183 chainCe2,65 est,109 est,122 est,144 est,253 est,263 est,294 est,312 est,322 est,371 est,497 est,605 gap,25 intronEst,58 intronEst,184 intronEst,197 intronEst,219 intronEst,328 intronEst,338 intronEst,369 intronEst,387 intronEst,397 intronEst,446 intronEst,572 intronEst,680 microsat,19 microsat,39 mrna,68 mrna,90 mrna,199 mrna,209 mrna,240 mrna,258 mrna,268 mrna,317 rmsk,235 rmsk,257 simpleRepeat,44 twinscan,48 xenoRefGene,88 bears est,94 intronEst,169 because est,597 intronEst,672 been chainCe2,289 intronEst,8 rmsk,70 before est,534 intronEst,609 below chainCe2,389 rmsk,105 twinscan,139 benson est,715 intronEst,793 microsat,102 microsat,112 microsat,114 mrna,432 simpleRepeat,64 simpleRepeat,72 simpleRepeat,74 best est,680 intronEst,755 mrna,396 xenoRefGene,267 best-in-genome blastzCe2,272 better est,74 mrna,55 between chainCe2,341 est,17 est,85 gap,86 gap,107 gold,161 gold,166 intronEst,18 intronEst,160 mrna,18 biocomput blastzCe2,295 chainCe2,491 bioinformatics augustusGene,307 augustusGene,332 blastzCe2,269 twinscan,174 birds augustusGene,203 black gap,35 gap,70 blast-like est,745 intronEst,823 mrna,462 xenoRefGene,306 blastz blastzCe2,2 blastzCe2,9 blastzCe2,16 blastzCe2,319 chainCe2,309 chainCe2,403 chainCe2,555 blat est,625 est,634 est,743 intronEst,700 intronEst,709 intronEst,821 mrna,366 mrna,460 xenoRefGene,228 blat--the xenoRefGene,305 blocks chainCe2,365 chainCe2,386 gold,171 gold,198 both chainCe2,52 chainCe2,74 chainCe2,129 xenoRefGene,126 xenoRefGene,197 boundaries gold,146 box blastzCe2,224 chainCe2,279 est,208 est,219 est,259 gap,71 intronEst,283 intronEst,294 intronEst,334 mrna,154 mrna,165 mrna,205 xenoRefGene,216 boxes chainCe2,80 chainCe2,90 est,179 gap,36 intronEst,254 mrna,125 branch-point augustusGene,55 brent twinscan,144 twinscan,165 bridge gold,77 gold,196 bridged gap,60 briggsae blastzCe2,31 chainCe2,29 chainCe2,57 chainCe2,116 chainCe2,163 chainCe2,296 chainCe2,351 est,2 est,5 est,19 est,615 gold,18 gold,111 gold,128 intronEst,4 intronEst,20 intronEst,121 intronEst,690 mrna,2 mrna,5 mrna,20 mrna,357 twinscan,7 xenoRefGene,4 xenoRefGene,25 xenoRefGene,225 brown gold,156 gold,170 xenoRefGene,322 browser chainCe2,461 est,226 est,339 est,356 intronEst,301 intronEst,414 intronEst,431 mrna,172 mrna,285 mrna,302 built augustusGene,51 augustusGene,67 but est,454 est,511 est,564 intronEst,529 intronEst,586 intronEst,639 rmsk,270 button blastzCe2,64 blastzCe2,127 blastzCe2,158 blastzCe2,256 chainCe2,250 by augustusGene,147 augustusGene,266 augustusGene,282 blastzCe2,107 blastzCe2,231 blastzCe2,262 chainCe2,67 chainCe2,83 chainCe2,220 chainCe2,283 chainCe2,410 chainCe2,429 chainCe2,449 chainCe2,471 est,464 est,633 est,711 gold,149 intronEst,87 intronEst,539 intronEst,708 intronEst,789 microsat,110 mrna,428 rmsk,4 rmsk,14 rmsk,50 simpleRepeat,6 simpleRepeat,22 simpleRepeat,70 twinscan,80 xenoRefGene,102 xenoRefGene,107 xenoRefGene,171 xenoRefGene,189 xenoRefGene,195 xenoRefGene,292 xenoRefGene,297 c blastzCe2,3 blastzCe2,20 blastzCe2,30 chainCe2,3 chainCe2,19 chainCe2,28 chainCe2,53 chainCe2,56 chainCe2,107 chainCe2,115 chainCe2,162 chainCe2,293 chainCe2,295 chainCe2,344 chainCe2,350 est,1 est,4 est,18 est,614 gcPercent,24 gold,17 gold,127 intronEst,3 intronEst,19 intronEst,120 intronEst,689 mrna,1 mrna,4 mrna,19 mrna,356 twinscan,6 twinscan,8 xenoRefGene,24 xenoRefGene,224 caenorhabditis augustusGene,212 california chainCe2,445 can augustusGene,98 blastzCe2,88 chainCe2,47 chainCe2,64 est,121 est,252 intronEst,196 intronEst,327 mrna,67 mrna,198 simpleRepeat,35 twinscan,47 xenoRefGene,87 canonical intronEst,70 cap-selected est,527 intronEst,602 cap-selection est,536 intronEst,611 cases chainCe2,151 cauldron chainCe2,508 caused chainCe2,66 cdna augustusGene,299 est,429 est,432 intronEst,504 intronEst,507 ce2 blastzCe2,8 blastzCe2,23 blastzCe2,27 chainCe2,8 chainCe2,21 chainCe2,25 cells est,424 intronEst,499 cerevisiae augustusGene,222 certain rmsk,260 chain chainCe2,2 chainCe2,77 chained chainCe2,9 chains chainCe2,154 chainCe2,166 chainCe2,177 chainCe2,223 chainCe2,262 chainCe2,383 chainCe2,387 chainCe2,396 chainCe2,468 change blastzCe2,92 est,125 intronEst,200 mrna,71 characteristic est,319 intronEst,394 mrna,265 check chainCe2,245 chiaromonte blastzCe2,282 chainCe2,478 chicken augustusGene,204 augustusGene,262 choose augustusGene,171 est,275 est,314 gold,85 intronEst,350 intronEst,389 mrna,221 mrna,260 chosen est,337 intronEst,412 mrna,283 chr4 chainCe2,277 chr6 blastzCe2,244 chrn blastzCe2,220 chromomsome blastzCe2,208 chromosome blastzCe2,72 blastzCe2,99 blastzCe2,108 blastzCe2,152 blastzCe2,166 blastzCe2,188 blastzCe2,199 blastzCe2,215 blastzCe2,232 blastzCe2,240 chainCe2,203 chainCe2,232 chainCe2,257 chainCe2,265 chainCe2,275 chainCe2,284 chainCe2,346 chainCe2,352 chromosome-based chainCe2,225 chromosomes blastzCe2,46 gold,99 gold,129 circle rmsk,172 class rmsk,169 classes rmsk,121 click blastzCe2,61 blastzCe2,155 blastzCe2,253 twinscan,105 xenoRefGene,110 xenoRefGene,214 clone gap,92 gap,105 cloned est,434 intronEst,509 clones gap,108 gold,74 closed gap,26 closest augustusGene,241 cm xenoRefGene,333 codes blastzCe2,41 coding simpleRepeat,38 xenoRefGene,212 codon mrna,321 mrna,346 twinscan,92 twinscan,109 xenoRefGene,138 xenoRefGene,145 xenoRefGene,160 xenoRefGene,190 codons twinscan,81 twinscan,85 xenoRefGene,165 xenoRefGene,172 collection xenoRefGene,33 color blastzCe2,40 blastzCe2,59 blastzCe2,68 blastzCe2,100 blastzCe2,147 blastzCe2,153 blastzCe2,162 blastzCe2,170 chainCe2,253 est,131 est,316 intronEst,206 intronEst,391 mrna,77 mrna,262 rmsk,177 twinscan,78 twinscan,88 xenoRefGene,58 xenoRefGene,169 coloration gold,157 colored blastzCe2,184 chainCe2,228 coloring chainCe2,244 est,410 intronEst,485 mrna,322 mrna,349 twinscan,110 xenoRefGene,139 xenoRefGene,146 xenoRefGene,184 colors xenoRefGene,81 xenoRefGene,161 combination est,278 intronEst,353 mrna,224 combined rmsk,202 comparative blastzCe2,10 chainCe2,11 compare mrna,331 xenoRefGene,155 comparison twinscan,101 comparisons twinscan,35 completely xenoRefGene,137 complex chainCe2,122 complexity rmsk,30 rmsk,153 components gold,200 computational twinscan,146 conditional augustusGene,118 configuration chainCe2,219 est,49 intronEst,127 mrna,30 rmsk,109 twinscan,56 twinscan,76 xenoRefGene,46 configured est,372 intronEst,447 mrna,318 xenoRefGene,89 configuring blastzCe2,250 considerable est,608 intronEst,683 considered intronEst,59 constructed gold,96 consult est,220 intronEst,295 mrna,166 contains est,245 gap,77 intronEst,320 mrna,191 xenoRefGene,142 contamination est,596 intronEst,93 intronEst,671 content augustusGene,71 gcPercent,37 gcPercent,47 gcPercent,50 context gap,95 contig gap,97 gap,113 gold,145 gold,214 contigs gap,48 gap,88 gold,41 gold,137 gold,162 gold,179 contributed blastzCe2,261 control blastzCe2,145 controls xenoRefGene,92 conventions chainCe2,217 est,47 est,55 intronEst,125 intronEst,133 mrna,28 mrna,36 rmsk,107 twinscan,54 twinscan,62 xenoRefGene,44 xenoRefGene,52 converted chainCe2,322 copies microsat,80 corresponds est,228 intronEst,303 mrna,174 cover est,529 intronEst,604 create gold,40 created gold,49 microsat,89 rmsk,13 creates chainCe2,357 credits augustusGene,247 blastzCe2,257 chainCe2,402 est,693 gcPercent,57 intronEst,771 microsat,104 mrna,409 rmsk,284 simpleRepeat,66 twinscan,140 xenoRefGene,280 criteria est,292 est,310 est,348 est,366 intronEst,367 intronEst,385 intronEst,423 intronEst,441 mrna,238 mrna,256 mrna,294 mrna,312 cross gold,55 cruz chainCe2,448 culex augustusGene,220 curated xenoRefGene,296 xenoRefGene,373 current est,163 intronEst,238 mrna,109 rmsk,216 currently gold,142 cytosine gcPercent,25 d augustusGene,293 blastzCe2,313 chainCe2,505 chainCe2,549 twinscan,164 d23-6 est,736 intronEst,814 mrna,453 d501-4 xenoRefGene,391 d756-63 xenoRefGene,357 da est,716 intronEst,794 mrna,433 dark xenoRefGene,75 darker intronEst,142 darkly est,69 gcPercent,41 mrna,50 data est,703 gold,81 gold,103 gold,106 intronEst,781 microsat,47 mrna,420 rmsk,229 rmsk,246 twinscan,157 xenoRefGene,36 xenoRefGene,290 database chainCe2,464 est,734 intronEst,812 mrna,451 rmsk,316 xenoRefGene,355 xenoRefGene,376 xenoRefGene,389 databases est,583 est,710 intronEst,97 intronEst,658 intronEst,788 mrna,427 david chainCe2,458 de augustusGene,303 default chainCe2,221 xenoRefGene,103 xenoRefGene,196 degraded est,498 intronEst,573 degree est,593 intronEst,668 deletion chainCe2,104 chainCe2,510 rmsk,190 deletions chainCe2,72 chainCe2,137 dense est,61 gold,131 intronEst,139 mrna,42 depicts gap,10 gold,135 deposited est,570 intronEst,645 derived blastzCe2,51 described rmsk,96 rmsk,309 twinscan,128 describes augustusGene,226 description augustusGene,12 blastzCe2,12 blastzCe2,77 blastzCe2,119 chainCe2,13 est,12 est,112 gap,7 gcPercent,12 gold,8 intronEst,13 intronEst,187 microsat,10 mrna,12 mrna,58 rmsk,9 simpleRepeat,11 twinscan,16 twinscan,69 twinscan,115 xenoRefGene,11 xenoRefGene,99 descriptions augustusGene,91 desired est,277 intronEst,352 mrna,223 detailed augustusGene,90 rmsk,37 developed chainCe2,405 chainCe2,440 di-nucleotide microsat,3 microsat,32 diekhans augustusGene,288 differ est,395 intronEst,470 different augustusGene,39 augustusGene,85 augustusGene,96 augustusGene,144 augustusGene,155 augustusGene,179 augustusGene,193 rmsk,120 direction est,81 est,99 intronEst,156 intronEst,174 discarded chainCe2,393 xenoRefGene,238 diseases simpleRepeat,54 display blastzCe2,94 blastzCe2,105 blastzCe2,136 blastzCe2,150 blastzCe2,202 blastzCe2,237 chainCe2,195 chainCe2,216 chainCe2,259 chainCe2,462 est,46 est,54 est,62 est,127 est,154 est,184 est,318 est,342 est,358 est,374 est,384 gold,194 intronEst,112 intronEst,124 intronEst,132 intronEst,140 intronEst,202 intronEst,229 intronEst,259 intronEst,393 intronEst,417 intronEst,433 intronEst,449 intronEst,459 mrna,27 mrna,35 mrna,43 mrna,73 mrna,100 mrna,130 mrna,264 mrna,288 mrna,304 mrna,320 rmsk,106 rmsk,112 rmsk,182 twinscan,53 twinscan,61 twinscan,96 xenoRefGene,43 xenoRefGene,51 xenoRefGene,80 xenoRefGene,116 xenoRefGene,159 displayed chainCe2,398 intronEst,767 xenoRefGene,204 displays blastzCe2,15 chainCe2,79 microsat,13 rmsk,116 simpleRepeat,14 dissertation augustusGene,105 distant est,553 intronEst,628 distinguished gold,148 distributions augustusGene,83 dj est,720 intronEst,798 mrna,437 dl est,724 intronEst,802 mrna,441 dna microsat,123 rmsk,23 rmsk,31 rmsk,145 rmsk,148 simpleRepeat,83 done augustusGene,265 augustusGene,281 blastzCe2,275 double chainCe2,87 chainCe2,118 double-lined chainCe2,179 double-sided chainCe2,61 downloads rmsk,76 dr xenoRefGene,367 draft gap,91 gold,13 drastically intronEst,99 drawn gap,67 gcPercent,39 gold,190 drosophila augustusGene,213 duan twinscan,163 due chainCe2,101 chainCe2,172 chainCe2,184 duplication chainCe2,509 during gap,27 dynamic chainCe2,370 e.g chainCe2,276 each blastzCe2,174 chainCe2,213 est,217 intronEst,292 mrna,163 twinscan,91 effect est,568 intronEst,643 either chainCe2,84 gap,50 electronic rmsk,319 elegans blastzCe2,1 blastzCe2,4 blastzCe2,21 chainCe2,1 chainCe2,4 chainCe2,20 chainCe2,54 chainCe2,108 chainCe2,294 chainCe2,345 gold,110 twinscan,9 element rmsk,198 elements rmsk,3 rmsk,127 rmsk,135 rmsk,140 rmsk,147 rmsk,323 eliminate est,641 intronEst,716 eliminating intronEst,105 emerged est,538 intronEst,613 end est,488 est,506 est,516 est,557 intronEst,563 intronEst,581 intronEst,591 intronEst,632 ends intronEst,86 enter chainCe2,270 entered est,254 intronEst,329 mrna,200 ermolaeva xenoRefGene,330 especially est,155 intronEst,230 mrna,101 est est,11 est,87 est,183 est,419 est,582 est,603 est,655 est,701 intronEst,12 intronEst,62 intronEst,96 intronEst,122 intronEst,162 intronEst,258 intronEst,494 intronEst,657 intronEst,678 intronEst,730 intronEst,779 mrna,11 ests est,3 est,6 est,23 est,29 est,193 est,287 est,302 est,343 est,361 est,458 est,503 est,514 est,616 est,643 intronEst,2 intronEst,5 intronEst,24 intronEst,40 intronEst,109 intronEst,115 intronEst,150 intronEst,268 intronEst,362 intronEst,377 intronEst,418 intronEst,436 intronEst,533 intronEst,578 intronEst,589 intronEst,691 intronEst,718 et twinscan,132 xenoRefGene,340 even est,577 est,584 intronEst,652 intronEst,659 evidence intronEst,65 evolution chainCe2,506 example blastzCe2,235 est,186 est,239 intronEst,261 intronEst,314 mrna,132 mrna,185 except twinscan,28 exception gap,19 exclude est,134 est,328 est,334 intronEst,209 intronEst,403 intronEst,409 mrna,80 mrna,274 mrna,280 exist gold,160 exon augustusGene,86 expansions simpleRepeat,48 expense intronEst,103 expressed est,20 est,194 intronEst,21 intronEst,269 mrna,140 extend rmsk,267 f blastzCe2,283 chainCe2,479 xenoRefGene,327 facilitate twinscan,98 factor est,231 intronEst,306 mrna,177 faq augustusGene,45 rmsk,280 farrell xenoRefGene,332 feature blastzCe2,38 blastzCe2,60 chainCe2,199 est,378 intronEst,453 mrna,324 twinscan,122 xenoRefGene,147 xenoRefGene,180 features xenoRefGene,83 fed chainCe2,334 field augustusGene,120 filter blastzCe2,81 blastzCe2,86 blastzCe2,103 blastzCe2,110 blastzCe2,200 blastzCe2,230 blastzCe2,252 chainCe2,282 est,119 est,168 est,181 est,190 est,237 est,267 est,291 est,309 est,347 est,365 intronEst,194 intronEst,243 intronEst,256 intronEst,265 intronEst,312 intronEst,342 intronEst,366 intronEst,384 intronEst,422 intronEst,440 mrna,65 mrna,114 mrna,127 mrna,136 mrna,183 mrna,213 mrna,237 mrna,255 mrna,293 mrna,311 twinscan,74 filtered est,330 intronEst,405 mrna,276 filtering blastzCe2,273 est,269 intronEst,344 mrna,215 find chainCe2,379 finder microsat,94 microsat,107 microsat,118 simpleRepeat,25 simpleRepeat,78 finding augustusGene,306 fingerprint gold,67 finished blastzCe2,249 gold,73 finishing gap,29 fish augustusGene,201 flag rmsk,253 flags rmsk,255 flicek twinscan,161 fly augustusGene,214 following gap,79 twinscan,73 follows est,52 intronEst,130 mrna,33 twinscan,59 xenoRefGene,49 for augustusGene,34 augustusGene,52 augustusGene,68 augustusGene,80 augustusGene,175 augustusGene,184 augustusGene,192 augustusGene,232 augustusGene,253 augustusGene,260 augustusGene,274 blastzCe2,234 chainCe2,212 est,56 est,114 est,185 est,216 est,238 est,400 est,411 est,451 intronEst,110 intronEst,134 intronEst,189 intronEst,260 intronEst,291 intronEst,313 intronEst,475 intronEst,486 intronEst,526 microsat,95 mrna,37 mrna,60 mrna,131 mrna,162 mrna,184 mrna,337 mrna,350 rmsk,25 rmsk,259 rmsk,281 rmsk,293 simpleRepeat,30 simpleRepeat,56 twinscan,63 twinscan,117 twinscan,154 xenoRefGene,20 xenoRefGene,53 xenoRefGene,175 form blastzCe2,219 format chainCe2,325 found augustusGene,100 mrna,384 twinscan,49 fpc gold,66 fragment gap,84 gold,206 fragments est,42 gold,4 intronEst,53 from augustusGene,19 blastzCe2,47 blastzCe2,194 blastzCe2,205 blastzCe2,239 chainCe2,134 chainCe2,300 chainCe2,422 chainCe2,454 est,396 est,423 est,444 est,554 est,572 est,617 est,700 gold,3 gold,24 gold,71 gold,90 gold,107 intronEst,471 intronEst,498 intronEst,519 intronEst,629 intronEst,647 intronEst,692 intronEst,778 mrna,7 mrna,417 rmsk,86 xenoRefGene,27 xenoRefGene,167 xenoRefGene,287 full chainCe2,194 rmsk,111 furthermore augustusGene,64 g gcPercent,21 microsat,115 simpleRepeat,75 gambiae augustusGene,219 gap chainCe2,33 chainCe2,43 chainCe2,146 gap,1 gap,2 gap,54 gap,61 gap,74 gapless chainCe2,363 gaps chainCe2,39 chainCe2,50 chainCe2,63 chainCe2,97 chainCe2,123 chainCe2,169 chainCe2,180 gap,11 gap,16 gap,23 gap,31 gap,83 gap,85 gap,106 gold,56 gold,78 gold,159 gary microsat,111 simpleRepeat,71 gc gcPercent,1 gcPercent,4 gcPercent,14 gcPercent,36 gcPercent,46 gcPercent,49 genbank est,25 est,618 est,725 intronEst,26 intronEst,693 intronEst,803 mrna,8 mrna,23 mrna,355 mrna,442 gene augustusGene,5 augustusGene,10 augustusGene,40 augustusGene,112 augustusGene,157 augustusGene,163 augustusGene,305 augustusGene,320 twinscan,3 twinscan,14 twinscan,38 twinscan,64 twinscan,103 twinscan,171 xenoRefGene,9 xenoRefGene,54 xenoRefGene,108 xenoRefGene,123 xenoRefGene,128 xenoRefGene,156 xenoRefGene,185 gene-rich gcPercent,55 general est,500 intronEst,575 generally rmsk,72 generate est,611 intronEst,686 rmsk,227 rmsk,302 generated chainCe2,470 gcPercent,61 rmsk,248 xenoRefGene,291 generating augustusGene,189 genes augustusGene,8 augustusGene,44 est,45 intronEst,56 simpleRepeat,41 twinscan,12 twinscan,21 xenoRefGene,6 xenoRefGene,7 xenoRefGene,19 xenoRefGene,194 xenoRefGene,202 xenoRefGene,213 genet rmsk,325 genetic gold,93 gold,101 rmsk,88 genome augustusGene,31 blastzCe2,32 blastzCe2,192 blastzCe2,320 chainCe2,30 chainCe2,164 chainCe2,556 est,28 est,623 est,748 gold,19 gold,28 gold,212 intronEst,29 intronEst,39 intronEst,698 intronEst,826 mrna,26 mrna,363 mrna,465 twinscan,34 xenoRefGene,226 xenoRefGene,309 genomes chainCe2,305 chainCe2,518 xenoRefGene,378 genomic blastzCe2,290 chainCe2,486 est,91 est,398 est,578 est,689 intronEst,166 intronEst,473 intronEst,653 intronEst,764 mrna,335 mrna,405 twinscan,84 twinscan,168 xenoRefGene,164 xenoRefGene,276 genomics blastzCe2,11 chainCe2,12 twinscan,147 genscan twinscan,27 genuine intronEst,107 giri rmsk,92 rmsk,292 go est,406 intronEst,481 mrna,343 xenoRefGene,181 gold gold,154 gold,168 gr xenoRefGene,323 graphical blastzCe2,135 gold,193 rmsk,181 group augustusGene,198 augustusGene,235 blastzCe2,270 chainCe2,355 twinscan,148 groups augustusGene,194 gt intronEst,84 guanine gcPercent,22 hardison blastzCe2,310 chainCe2,424 chainCe2,546 hart xenoRefGene,334 has blastzCe2,35 blastzCe2,84 est,117 intronEst,83 intronEst,192 mrna,63 rmsk,212 xenoRefGene,68 haussler augustusGene,292 blastzCe2,312 chainCe2,459 chainCe2,504 chainCe2,548 have blastzCe2,248 chainCe2,288 intronEst,7 rmsk,69 having est,662 est,671 intronEst,737 intronEst,746 mrna,378 mrna,387 xenoRefGene,249 xenoRefGene,258 help twinscan,107 helpful est,145 intronEst,220 mrna,91 heterochromatic gap,22 hiatt xenoRefGene,324 hidden augustusGene,324 hide xenoRefGene,192 high gcPercent,35 gcPercent,48 higher rmsk,200 highest est,664 intronEst,739 mrna,380 xenoRefGene,251 highlight est,325 intronEst,400 mrna,271 highlighted est,295 est,313 intronEst,370 intronEst,388 mrna,241 mrna,259 highly microsat,40 hinrichs chainCe2,500 his chainCe2,433 homology twinscan,11 twinscan,169 honeybee1 augustusGene,217 hou chainCe2,412 http twinscan,51 hubley rmsk,290 human augustusGene,205 augustusGene,210 augustusGene,276 chainCe2,517 human-mouse blastzCe2,316 chainCe2,552 hybridizes est,468 intronEst,543 i est,718 intronEst,796 mrna,435 twinscan,131 twinscan,160 i.e intronEst,72 identified chainCe2,428 est,668 intronEst,743 xenoRefGene,255 identity est,666 est,674 est,686 intronEst,741 intronEst,749 intronEst,761 microsat,71 mrna,382 mrna,390 mrna,402 xenoRefGene,253 xenoRefGene,261 xenoRefGene,273 if est,268 est,280 est,296 est,332 est,349 gap,40 intronEst,343 intronEst,355 intronEst,371 intronEst,407 intronEst,424 mrna,214 mrna,226 mrna,242 mrna,278 mrna,295 xenoRefGene,205 ii215-25 augustusGene,338 imperfect simpleRepeat,19 improve augustusGene,302 twinscan,37 in augustusGene,101 blastzCe2,52 blastzCe2,189 blastzCe2,209 blastzCe2,217 blastzCe2,221 chainCe2,51 chainCe2,73 chainCe2,105 chainCe2,113 chainCe2,128 chainCe2,147 chainCe2,150 chainCe2,190 chainCe2,207 chainCe2,236 chainCe2,266 chainCe2,278 chainCe2,317 chainCe2,399 chainCe2,513 est,24 est,37 est,60 est,151 est,172 est,195 est,205 est,223 est,265 est,387 est,499 est,547 est,657 gap,12 gap,37 gap,93 gap,109 gcPercent,5 gcPercent,27 gold,130 gold,191 intronEst,25 intronEst,48 intronEst,80 intronEst,94 intronEst,138 intronEst,226 intronEst,247 intronEst,270 intronEst,280 intronEst,298 intronEst,340 intronEst,462 intronEst,574 intronEst,622 intronEst,732 intronEst,768 microsat,42 microsat,49 mrna,22 mrna,41 mrna,97 mrna,118 mrna,141 mrna,151 mrna,169 mrna,211 mrna,373 rmsk,45 rmsk,63 rmsk,97 rmsk,101 rmsk,110 rmsk,179 rmsk,276 rmsk,310 twinscan,22 twinscan,93 twinscan,129 twinscan,135 xenoRefGene,244 include est,133 est,327 est,351 intronEst,208 intronEst,402 intronEst,426 mrna,79 mrna,273 mrna,297 rmsk,130 rmsk,143 included augustusGene,160 includes rmsk,168 including est,7 intronEst,116 rmsk,159 indels microsat,74 indicate blastzCe2,44 chainCe2,96 chainCe2,201 est,71 mrna,52 indicates est,79 intronEst,144 intronEst,154 xenoRefGene,60 individual chainCe2,198 information augustusGene,36 est,78 est,402 gold,45 gold,53 intronEst,153 intronEst,477 microsat,97 mrna,339 rmsk,89 rmsk,283 simpleRepeat,58 twinscan,42 twinscan,119 xenoRefGene,177 initiate rmsk,275 initio augustusGene,4 augustusGene,17 inserted chainCe2,290 insertion chainCe2,112 rmsk,193 instead xenoRefGene,120 institute rmsk,91 integrating twinscan,167 international est,707 intronEst,785 mrna,424 internet rmsk,245 interspersed rmsk,26 rmsk,125 rmsk,133 into chainCe2,323 chainCe2,335 chainCe2,353 est,255 est,428 est,435 est,580 gold,61 intronEst,330 intronEst,503 intronEst,510 intronEst,655 mrna,201 twinscan,170 intractable gap,21 intron augustusGene,88 augustusGene,330 est,630 intronEst,71 intronEst,705 introns est,647 intronEst,722 inversions chainCe2,69 chainCe2,135 involve chainCe2,125 is blastzCe2,111 blastzCe2,122 blastzCe2,172 est,284 est,300 est,336 est,353 est,421 est,433 est,442 est,462 est,591 est,635 gap,55 gap,58 gap,66 gap,98 gcPercent,51 gold,183 gold,189 intronEst,75 intronEst,98 intronEst,359 intronEst,375 intronEst,411 intronEst,428 intronEst,496 intronEst,508 intronEst,517 intronEst,537 intronEst,666 intronEst,710 microsat,88 mrna,230 mrna,246 mrna,282 mrna,299 rmsk,95 rmsk,308 simpleRepeat,28 twinscan,127 isolated est,422 intronEst,497 issue est,735 intronEst,813 mrna,452 xenoRefGene,356 xenoRefGene,390 it chainCe2,46 est,93 est,107 est,484 gap,57 intronEst,168 intronEst,182 intronEst,559 item xenoRefGene,77 items blastzCe2,177 est,65 est,138 est,148 est,331 intronEst,213 intronEst,223 intronEst,406 mrna,46 mrna,84 mrna,94 mrna,277 xenoRefGene,104 j est,722 gold,35 intronEst,800 mrna,439 rmsk,99 rmsk,312 xenoRefGene,335 jan blastzCe2,323 chainCe2,559 est,731 intronEst,809 microsat,129 mrna,448 simpleRepeat,89 xenoRefGene,353 xenoRefGene,386 jim chainCe2,450 chainCe2,475 joined chainCe2,81 journal rmsk,320 jurka rmsk,98 rmsk,311 k augustusGene,268 karsch-mizrachi est,717 intronEst,795 mrna,434 kd xenoRefGene,321 xenoRefGene,363 kd-tree chainCe2,359 kd-trees chainCe2,377 kent blastzCe2,302 chainCe2,451 chainCe2,476 chainCe2,496 chainCe2,538 est,741 intronEst,819 mrna,458 xenoRefGene,303 kept est,692 mrna,408 xenoRefGene,279 km xenoRefGene,339 known gap,56 gold,185 xenoRefGene,15 korf twinscan,130 twinscan,159 lab augustusGene,252 label twinscan,90 xenoRefGene,101 xenoRefGene,113 xenoRefGene,136 labeled xenoRefGene,106 labeling est,376 intronEst,451 labels xenoRefGene,78 landrum xenoRefGene,336 largely chainCe2,100 larger intronEst,146 lavtoaxt chainCe2,328 least est,683 intronEst,68 intronEst,77 intronEst,758 microsat,29 microsat,78 mrna,399 xenoRefGene,270 left blastzCe2,130 length augustusGene,82 est,38 est,631 intronEst,49 intronEst,81 intronEst,706 less xenoRefGene,234 level est,675 intronEst,91 intronEst,750 mrna,391 rmsk,175 xenoRefGene,62 xenoRefGene,262 libraries est,528 intronEst,603 rmsk,224 rmsk,299 library rmsk,83 light xenoRefGene,71 lighter rmsk,207 likely augustusGene,111 microsat,17 line gap,65 gold,188 rmsk,136 lineage-specific chainCe2,425 lines chainCe2,88 chainCe2,95 chainCe2,119 link blastzCe2,140 twinscan,111 lipman est,719 intronEst,797 mrna,436 list est,212 intronEst,287 mrna,158 local chainCe2,68 chainCe2,141 located blastzCe2,112 simpleRepeat,21 location chainCe2,206 locations gap,3 logic est,279 intronEst,354 mrna,225 long est,646 intronEst,721 rmsk,132 rmsk,137 longer chainCe2,38 louis twinscan,153 low gcPercent,45 rmsk,29 rmsk,152 ltr rmsk,141 m augustusGene,287 augustusGene,289 augustusGene,317 maglott xenoRefGene,366 major gold,88 make est,417 est,483 gold,139 intronEst,492 intronEst,558 mammalian xenoRefGene,346 manner twinscan,24 many est,147 intronEst,106 intronEst,222 mrna,93 map chainCe2,234 gap,112 gold,94 mapped augustusGene,298 gold,62 mapping gap,4 gcPercent,9 gold,5 gold,68 gold,102 mar augustusGene,309 blastzCe2,5 blastzCe2,24 chainCe2,5 chainCe2,22 mario augustusGene,102 augustusGene,283 mark est,504 intronEst,579 markers microsat,23 markov augustusGene,325 masked rmsk,71 match chainCe2,211 est,84 est,289 est,304 est,345 est,363 intronEst,159 intronEst,364 intronEst,379 intronEst,420 intronEst,438 mrna,235 mrna,250 mrna,291 mrna,309 matches est,72 mrna,53 matching chainCe2,214 est,90 intronEst,165 material gold,70 mature est,474 intronEst,549 maximally chainCe2,381 maximum est,629 intronEst,704 maxtracks augustusGene,139 may chainCe2,132 est,143 est,261 est,369 est,479 est,481 est,493 est,495 est,515 est,640 intronEst,218 intronEst,336 intronEst,444 intronEst,554 intronEst,556 intronEst,568 intronEst,570 intronEst,590 intronEst,715 mrna,89 mrna,207 mrna,315 rmsk,234 rmsk,256 rmsk,266 simpleRepeat,43 mblab.wustl.edu twinscan,52 mcgarvey xenoRefGene,338 mdash est,453 est,457 intronEst,528 intronEst,532 medium xenoRefGene,73 mellifera augustusGene,216 menu blastzCe2,146 xenoRefGene,174 methods augustusGene,46 chainCe2,285 est,415 intronEst,490 microsat,45 mrna,354 rmsk,210 simpleRepeat,55 twinscan,123 xenoRefGene,217 michael twinscan,143 micro-satellites rmsk,151 microsatellite microsat,1 microsat,22 microsatellites microsat,2 might est,108 est,649 intronEst,183 intronEst,724 miller blastzCe2,286 blastzCe2,314 chainCe2,419 chainCe2,456 chainCe2,482 chainCe2,502 chainCe2,550 million gold,26 minexonintronprob augustusGene,135 minmeanexonintronprob augustusGene,137 minmei chainCe2,411 mismatch rmsk,188 mj xenoRefGene,337 mode blastzCe2,95 est,63 est,128 gold,132 intronEst,141 intronEst,203 mrna,44 mrna,74 rmsk,113 model augustusGene,121 augustusGene,326 models augustusGene,49 augustusGene,65 augustusGene,97 augustusGene,145 augustusGene,178 modes chainCe2,196 modified rmsk,57 more augustusGene,35 chainCe2,121 chainCe2,182 est,68 est,175 est,271 est,401 gcPercent,40 intronEst,250 intronEst,346 intronEst,476 microsat,96 mrna,49 mrna,121 mrna,217 mrna,338 rmsk,282 simpleRepeat,57 twinscan,41 twinscan,118 xenoRefGene,176 most augustusGene,93 augustusGene,110 est,452 intronEst,527 rmsk,215 mouse chainCe2,515 mr twinscan,166 mrna est,9 est,475 est,491 est,574 intronEst,10 intronEst,550 intronEst,566 intronEst,649 mrna,9 mrna,14 mrna,129 mrna,371 mrna,411 mrna,418 mrnas mrna,3 mrna,6 mrna,21 mrna,139 mrna,233 mrna,248 mrna,289 mrna,307 mrna,332 mrna,358 mullikin gold,34 multiple chainCe2,153 est,658 intronEst,733 mrna,374 xenoRefGene,245 must intronEst,63 mutation chainCe2,142 name chainCe2,272 est,201 intronEst,276 mrna,147 xenoRefGene,109 xenoRefGene,119 xenoRefGene,124 names chainCe2,200 xenoRefGene,131 native augustusGene,295 natl chainCe2,520 ncbi xenoRefGene,29 xenoRefGene,299 xenoRefGene,368 nematodes augustusGene,211 new augustusGene,329 newer est,526 intronEst,601 rmsk,236 next blastzCe2,65 blastzCe2,159 chainCe2,251 chainCe2,280 nig augustusGene,270 no est,95 intronEst,170 microsat,73 non-c xenoRefGene,3 non-coding augustusGene,75 xenoRefGene,193 non-mrna est,595 intronEst,670 non-protein-coding xenoRefGene,18 xenoRefGene,201 non-redundant xenoRefGene,374 not est,341 est,455 est,482 est,496 intronEst,416 intronEst,530 intronEst,557 intronEst,571 mrna,287 rmsk,272 note est,626 intronEst,701 rmsk,230 novo augustusGene,304 nuclear rmsk,126 rmsk,134 nucleic est,727 intronEst,805 microsat,125 mrna,444 simpleRepeat,85 xenoRefGene,349 xenoRefGene,382 number augustusGene,153 blastzCe2,216 intronEst,147 rmsk,203 o xenoRefGene,331 obtained augustusGene,126 occur simpleRepeat,36 oct augustusGene,334 of augustusGene,72 augustusGene,84 augustusGene,92 augustusGene,94 augustusGene,154 augustusGene,195 augustusGene,236 blastzCe2,18 blastzCe2,116 blastzCe2,131 blastzCe2,175 blastzCe2,228 blastzCe2,265 chainCe2,18 chainCe2,140 chainCe2,160 chainCe2,209 chainCe2,263 chainCe2,273 chainCe2,361 chainCe2,366 chainCe2,384 chainCe2,444 chainCe2,466 est,43 est,73 est,82 est,100 est,102 est,137 est,176 est,202 est,213 est,249 est,307 est,473 est,489 est,507 est,524 est,586 est,594 est,598 est,678 gap,20 gap,46 gap,52 gap,82 gap,89 gap,101 gcPercent,20 gold,15 gold,152 gold,177 gold,205 intronEst,33 intronEst,54 intronEst,66 intronEst,92 intronEst,104 intronEst,113 intronEst,148 intronEst,157 intronEst,175 intronEst,177 intronEst,212 intronEst,251 intronEst,277 intronEst,288 intronEst,324 intronEst,382 intronEst,548 intronEst,564 intronEst,582 intronEst,599 intronEst,661 intronEst,669 intronEst,673 intronEst,753 microsat,27 microsat,55 microsat,64 microsat,81 mrna,54 mrna,83 mrna,122 mrna,148 mrna,159 mrna,195 mrna,253 mrna,394 rmsk,39 rmsk,59 rmsk,84 rmsk,122 rmsk,176 rmsk,186 rmsk,204 rmsk,218 rmsk,321 simpleRepeat,40 twinscan,33 twinscan,102 xenoRefGene,63 xenoRefGene,82 xenoRefGene,96 xenoRefGene,121 xenoRefGene,233 xenoRefGene,265 xenoRefGene,377 off chainCe2,242 chainCe2,248 xenoRefGene,134 offers twinscan,71 often chainCe2,171 chainCe2,183 oligo-dt est,466 intronEst,541 on augustusGene,29 augustusGene,37 augustusGene,151 blastzCe2,63 blastzCe2,71 blastzCe2,74 blastzCe2,97 blastzCe2,141 blastzCe2,157 blastzCe2,165 chainCe2,230 chainCe2,256 est,232 est,270 gap,49 gold,43 gold,65 intronEst,307 intronEst,345 mrna,178 mrna,216 rmsk,74 rmsk,243 twinscan,108 twinscan,112 xenoRefGene,345 one augustusGene,169 chainCe2,148 chainCe2,264 est,173 est,273 est,306 intronEst,69 intronEst,73 intronEst,248 intronEst,348 intronEst,381 mrna,119 mrna,219 mrna,252 only blastzCe2,203 chainCe2,260 est,157 est,286 est,359 est,392 est,669 intronEst,232 intronEst,361 intronEst,434 intronEst,467 intronEst,744 microsat,61 mrna,103 mrna,232 mrna,305 mrna,385 xenoRefGene,210 xenoRefGene,256 option augustusGene,167 augustusGene,187 est,405 intronEst,480 mrna,342 twinscan,86 xenoRefGene,114 xenoRefGene,166 optional blastzCe2,37 xenoRefGene,144 options twinscan,77 or blastzCe2,102 blastzCe2,137 chainCe2,86 chainCe2,110 chainCe2,143 est,174 est,298 est,317 est,326 est,391 est,448 est,480 est,494 intronEst,249 intronEst,373 intronEst,392 intronEst,401 intronEst,466 intronEst,523 intronEst,555 intronEst,569 mrna,120 mrna,244 mrna,263 mrna,272 xenoRefGene,132 order gap,43 gold,120 gold,174 organ est,198 est,204 intronEst,273 intronEst,279 mrna,144 mrna,150 organism chainCe2,239 chainCe2,269 organisms rmsk,261 xenoRefGene,21 organizes chainCe2,338 orient gold,122 orientation gap,45 gold,176 originated blastzCe2,198 orthologs gold,112 ostell est,721 intronEst,799 mrna,438 other augustusGene,208 rmsk,165 xenoRefGene,1 xenoRefGene,22 otherwise est,650 intronEst,725 ouml augustusGene,269 our augustusGene,43 out chainCe2,360 output blastzCe2,106 outputs rmsk,35 outside est,585 intronEst,660 over chainCe2,156 chainCe2,375 overlap gold,44 overlapping chainCe2,71 chainCe2,136 gap,102 p twinscan,162 pac blastzCe2,293 chainCe2,489 pack chainCe2,192 page blastzCe2,78 blastzCe2,120 est,113 est,414 intronEst,188 intronEst,489 mrna,59 mrna,353 rmsk,77 twinscan,70 twinscan,116 xenoRefGene,100 xenoRefGene,191 pair gold,52 pairwise blastzCe2,289 chainCe2,485 paralogs chainCe2,186 particular augustusGene,234 chainCe2,158 patterns augustusGene,56 penn blastzCe2,267 pennsylvania chainCe2,407 percent gcPercent,2 gcPercent,15 percentage gcPercent,3 gcPercent,19 perfect microsat,31 perhaps est,576 intronEst,651 period microsat,65 permitted rmsk,273 phusion gold,33 places est,659 intronEst,734 mrna,375 xenoRefGene,246 plasmid est,437 intronEst,512 pmc blastzCe2,329 chainCe2,534 chainCe2,565 est,739 est,757 intronEst,817 intronEst,835 microsat,136 mrna,456 mrna,474 simpleRepeat,96 xenoRefGene,318 xenoRefGene,360 xenoRefGene,394 pmc148217 microsat,137 simpleRepeat,97 pmc187518 est,758 intronEst,836 mrna,475 xenoRefGene,319 pmc208784 chainCe2,535 pmc308779 est,740 intronEst,818 mrna,457 pmc3965018 xenoRefGene,361 pmc430961 blastzCe2,330 chainCe2,566 pmc539979 xenoRefGene,395 pmid augustusGene,314 augustusGene,339 blastzCe2,298 blastzCe2,327 chainCe2,494 chainCe2,532 chainCe2,563 est,737 est,755 intronEst,815 intronEst,833 microsat,134 mrna,454 mrna,472 simpleRepeat,94 twinscan,180 xenoRefGene,316 xenoRefGene,358 xenoRefGene,392 point est,519 intronEst,594 poly-a augustusGene,62 est,471 est,545 intronEst,546 intronEst,620 polymorphic microsat,41 simpleRepeat,46 population microsat,44 possibly simpleRepeat,18 predicted xenoRefGene,70 prediction augustusGene,321 twinscan,39 twinscan,65 twinscan,173 xenoRefGene,55 predictions augustusGene,6 augustusGene,11 augustusGene,18 augustusGene,26 augustusGene,191 twinscan,4 twinscan,15 twinscan,104 xenoRefGene,10 xenoRefGene,157 xenoRefGene,186 predicts twinscan,20 present rmsk,44 previously gold,72 primed est,463 intronEst,538 primer est,450 intronEst,525 primers gold,86 priming est,546 intronEst,621 principal gap,80 proc chainCe2,519 process gap,30 processed chainCe2,174 produced est,697 intronEst,775 mrna,414 xenoRefGene,284 program augustusGene,21 augustusGene,257 blastzCe2,280 chainCe2,329 chainCe2,371 chainCe2,435 chainCe2,438 microsat,100 microsat,120 mrna,367 rmsk,20 rmsk,34 simpleRepeat,62 simpleRepeat,80 twinscan,19 project xenoRefGene,301 projects est,540 est,559 est,589 intronEst,615 intronEst,634 intronEst,664 protein-coding augustusGene,73 xenoRefGene,16 xenoRefGene,199 proteins xenoRefGene,381 providing augustusGene,254 rmsk,294 twinscan,155 provisional xenoRefGene,72 pruitt xenoRefGene,320 xenoRefGene,362 pseudogenes chainCe2,175 chainCe2,189 psl est,57 intronEst,135 mrna,38 public est,708 intronEst,786 mrna,425 publicly rmsk,241 pull-down xenoRefGene,173 purpose simpleRepeat,32 quality est,75 mrna,56 query rmsk,47 rmsk,61 quickly mrna,330 xenoRefGene,152 quite simpleRepeat,45 quot blastzCe2,67 blastzCe2,73 blastzCe2,161 blastzCe2,167 blastzCe2,229 blastzCe2,233 blastzCe2,243 blastzCe2,245 chainCe2,60 chainCe2,62 chainCe2,247 chainCe2,249 est,241 est,243 est,281 est,283 est,297 est,299 est,333 est,335 est,350 est,352 gold,208 gold,210 intronEst,316 intronEst,318 intronEst,356 intronEst,358 intronEst,372 intronEst,374 intronEst,408 intronEst,410 intronEst,425 intronEst,427 mrna,187 mrna,189 mrna,227 mrna,229 mrna,243 mrna,245 mrna,279 mrna,281 mrna,296 mrna,298 r augustusGene,291 blastzCe2,309 blastzCe2,311 chainCe2,499 chainCe2,545 chainCe2,547 random augustusGene,119 est,542 intronEst,617 random-primed est,588 intronEst,663 rather est,543 intronEst,618 rc rmsk,170 read est,441 gold,51 intronEst,516 reads gap,104 gold,31 rearrangement chainCe2,512 reasonably est,509 est,532 intronEst,584 intronEst,607 record xenoRefGene,67 reduced intronEst,100 reference xenoRefGene,31 xenoRefGene,347 xenoRefGene,369 references augustusGene,285 blastzCe2,281 chainCe2,477 est,714 intronEst,792 microsat,113 mrna,431 rmsk,103 rmsk,305 simpleRepeat,73 twinscan,137 twinscan,158 xenoRefGene,302 refine gold,116 reflects rmsk,183 refseq xenoRefGene,2 xenoRefGene,5 xenoRefGene,34 xenoRefGene,66 xenoRefGene,300 xenoRefGene,342 xenoRefGene,371 region chainCe2,159 regions augustusGene,76 chainCe2,93 microsat,14 simpleRepeat,39 related augustusGene,242 relationship est,96 intronEst,171 relative gap,42 gold,173 relevant est,160 intronEst,235 mrna,106 remaining chainCe2,395 removed chainCe2,299 repbase rmsk,81 rmsk,93 rmsk,306 rmsk,313 repeat microsat,83 rmsk,139 rmsk,146 rmsk,197 rmsk,223 rmsk,298 simpleRepeat,47 repeating rmsk,2 repeatmasker chainCe2,434 rmsk,1 rmsk,5 rmsk,19 rmsk,78 rmsk,220 rmsk,251 repeats chainCe2,426 microsat,6 microsat,9 microsat,35 microsat,58 microsat,63 microsat,86 microsat,93 microsat,106 microsat,117 rmsk,8 rmsk,27 rmsk,41 rmsk,68 rmsk,85 rmsk,123 rmsk,150 rmsk,154 rmsk,156 rmsk,158 rmsk,166 rmsk,262 rmsk,269 simpleRepeat,2 simpleRepeat,5 simpleRepeat,10 simpleRepeat,17 simpleRepeat,20 simpleRepeat,24 simpleRepeat,34 simpleRepeat,77 repetitive rmsk,322 represent chainCe2,91 chainCe2,120 est,41 intronEst,52 represented gap,33 rmsk,49 representing gap,72 requiring intronEst,88 res blastzCe2,321 chainCe2,557 est,729 est,749 intronEst,807 intronEst,827 microsat,127 mrna,446 mrna,466 simpleRepeat,87 xenoRefGene,310 xenoRefGene,351 xenoRefGene,384 research rmsk,90 result chainCe2,133 resulting chainCe2,319 retrieve est,551 intronEst,626 retroposons rmsk,144 reverse est,426 est,460 est,477 intronEst,501 intronEst,535 intronEst,552 review xenoRefGene,64 reviewed xenoRefGene,74 right blastzCe2,227 rna est,104 est,420 intronEst,179 intronEst,495 rmsk,157 rmsk,160 xenoRefGene,30 xenoRefGene,242 xenoRefGene,288 rnas xenoRefGene,219 robert chainCe2,472 rmsk,289 rolling rmsk,171 ross chainCe2,423 rrna rmsk,162 run chainCe2,374 s augustusGene,104 augustusGene,221 augustusGene,319 blastzCe2,134 blastzCe2,144 blastzCe2,278 blastzCe2,301 chainCe2,507 chainCe2,524 chainCe2,537 rmsk,18 rmsk,252 twinscan,145 s140-8 twinscan,179 saccharomyces augustusGene,223 same gap,111 sample augustusGene,133 sampling augustusGene,129 santa chainCe2,447 satellite rmsk,155 scaffold gold,144 gold,182 schwartz blastzCe2,264 blastzCe2,300 chainCe2,414 chainCe2,536 sci chainCe2,522 scientists est,712 intronEst,790 mrna,429 xenoRefGene,293 scoring blastzCe2,288 chainCe2,34 chainCe2,44 chainCe2,382 chainCe2,388 chainCe2,484 scott blastzCe2,263 chainCe2,413 screens rmsk,22 scrna rmsk,164 section rmsk,104 twinscan,138 see augustusGene,42 intronEst,118 microsat,101 rmsk,278 simpleRepeat,63 xenoRefGene,209 select twinscan,82 xenoRefGene,162 selected est,285 est,301 est,354 intronEst,360 intronEst,376 intronEst,429 mrna,231 mrna,247 mrna,300 selecting microsat,60 semi-markov augustusGene,117 sep chainCe2,527 rmsk,327 sequence augustusGene,32 augustusGene,70 blastzCe2,291 chainCe2,127 chainCe2,487 est,21 est,92 est,390 est,399 est,552 est,690 est,702 est,709 gap,103 gold,80 intronEst,22 intronEst,167 intronEst,465 intronEst,474 intronEst,627 intronEst,765 intronEst,780 intronEst,787 mrna,336 mrna,406 mrna,419 mrna,426 rmsk,48 rmsk,62 xenoRefGene,277 xenoRefGene,289 xenoRefGene,370 xenoRefGene,375 sequences est,32 est,571 est,579 gold,124 intronEst,43 intronEst,646 intronEst,654 microsat,26 microsat,124 rmsk,24 rmsk,32 simpleRepeat,84 xenoRefGene,32 xenoRefGene,348 sequencing gap,6 gcPercent,11 gold,7 server twinscan,46 set gap,100 sets augustusGene,158 shaded est,70 mrna,51 shading intronEst,143 rmsk,178 rmsk,209 xenoRefGene,59 short rmsk,124 shotgun gold,29 gold,213 should est,321 est,604 intronEst,396 intronEst,679 mrna,267 show blastzCe2,186 intronEst,31 intronEst,64 xenoRefGene,125 shown est,150 gold,165 intronEst,225 microsat,48 mrna,96 shows augustusGene,15 augustusGene,108 chainCe2,16 est,15 gcPercent,17 gold,11 intronEst,16 mrna,16 xenoRefGene,14 side est,567 gap,51 intronEst,642 signal augustusGene,48 augustusGene,63 signs intronEst,32 similar twinscan,25 simple microsat,57 microsat,85 rmsk,149 simpleRepeat,1 simpleRepeat,3 simpleRepeat,15 simultaneously chainCe2,58 since chainCe2,291 sine rmsk,128 single chainCe2,85 chainCe2,94 chainCe2,343 chainCe2,349 est,601 est,654 intronEst,676 intronEst,729 mrna,370 xenoRefGene,241 single-lined chainCe2,168 single-read est,31 intronEst,42 sites augustusGene,54 augustusGene,59 six gold,98 skepticism est,609 intronEst,684 sm xenoRefGene,325 small blastzCe2,126 smit blastzCe2,304 chainCe2,431 chainCe2,540 rmsk,17 rmsk,288 snrna rmsk,163 soft-masked rmsk,264 software rmsk,221 some est,158 est,523 est,539 est,642 intronEst,233 intronEst,598 intronEst,614 intronEst,717 mrna,104 sometimes simpleRepeat,50 spaces gold,163 specialized simpleRepeat,29 species augustusGene,166 augustusGene,173 augustusGene,181 augustusGene,186 augustusGene,200 augustusGene,229 augustusGene,244 chainCe2,75 chainCe2,130 chainCe2,149 species-specific augustusGene,156 specific blastzCe2,207 est,197 intronEst,272 mrna,143 simpleRepeat,53 splice augustusGene,53 spliced intronEst,1 intronEst,9 intronEst,60 splicing augustusGene,123 intronEst,34 intronEst,89 split chainCe2,297 st twinscan,152 stanke augustusGene,103 augustusGene,251 augustusGene,284 augustusGene,286 augustusGene,316 start augustusGene,58 est,531 intronEst,606 state blastzCe2,268 chainCe2,408 statistical augustusGene,47 stefanie augustusGene,267 storage chainCe2,465 strand chainCe2,204 est,77 intronEst,152 structure augustusGene,113 twinscan,172 structures augustusGene,164 submit blastzCe2,255 submitted est,704 intronEst,782 mrna,421 submodel augustusGene,331 subsections chainCe2,364 subset est,136 intronEst,211 microsat,54 mrna,82 substantial chainCe2,126 successful est,561 intronEst,636 supercontigs gold,46 gold,58 suppl augustusGene,336 twinscan,177 symp blastzCe2,294 chainCe2,490 syntenically augustusGene,297 system chainCe2,35 systems chainCe2,45 t xenoRefGene,365 table augustusGene,225 est,222 est,225 est,244 intronEst,297 intronEst,300 intronEst,319 mrna,168 mrna,171 mrna,190 tags est,22 intronEst,23 tail est,472 intronEst,547 taken est,443 intronEst,518 xenoRefGene,26 takes twinscan,31 tandem microsat,92 microsat,105 microsat,116 simpleRepeat,4 simpleRepeat,16 simpleRepeat,23 simpleRepeat,76 task est,164 intronEst,239 mrna,110 tatusova xenoRefGene,364 techniques est,537 intronEst,612 temperature augustusGene,141 ten rmsk,119 tend microsat,37 term est,171 intronEst,246 mrna,117 terminal rmsk,138 terms est,215 intronEst,290 mrna,161 text blastzCe2,223 est,178 est,218 est,258 intronEst,253 intronEst,293 intronEst,333 mrna,124 mrna,164 mrna,204 than chainCe2,40 est,272 est,544 gcPercent,42 intronEst,347 intronEst,619 mrna,218 rmsk,237 xenoRefGene,23 xenoRefGene,235 thanks augustusGene,248 rmsk,285 twinscan,141 that blastzCe2,39 blastzCe2,87 chainCe2,36 chainCe2,98 chainCe2,124 chainCe2,274 chainCe2,287 est,39 est,66 est,120 est,227 est,251 est,288 est,303 est,320 est,344 est,362 est,379 est,394 est,627 est,648 gold,138 intronEst,6 intronEst,30 intronEst,50 intronEst,74 intronEst,195 intronEst,302 intronEst,326 intronEst,363 intronEst,378 intronEst,395 intronEst,419 intronEst,437 intronEst,454 intronEst,469 intronEst,702 intronEst,723 microsat,15 mrna,47 mrna,66 mrna,173 mrna,197 mrna,234 mrna,249 mrna,266 mrna,290 mrna,308 mrna,325 rmsk,42 rmsk,231 rmsk,239 twinscan,29 xenoRefGene,148 the augustusGene,20 augustusGene,25 augustusGene,30 augustusGene,38 augustusGene,61 augustusGene,69 augustusGene,81 augustusGene,109 augustusGene,143 augustusGene,165 augustusGene,172 augustusGene,177 augustusGene,185 augustusGene,240 augustusGene,250 augustusGene,255 augustusGene,258 augustusGene,261 augustusGene,272 augustusGene,275 blastzCe2,19 blastzCe2,29 blastzCe2,33 blastzCe2,45 blastzCe2,53 blastzCe2,58 blastzCe2,62 blastzCe2,75 blastzCe2,80 blastzCe2,93 blastzCe2,98 blastzCe2,104 blastzCe2,109 blastzCe2,114 blastzCe2,117 blastzCe2,125 blastzCe2,129 blastzCe2,132 blastzCe2,139 blastzCe2,142 blastzCe2,151 blastzCe2,156 blastzCe2,169 blastzCe2,176 blastzCe2,179 blastzCe2,187 blastzCe2,190 blastzCe2,196 blastzCe2,210 blastzCe2,214 blastzCe2,218 blastzCe2,222 blastzCe2,226 blastzCe2,251 blastzCe2,254 blastzCe2,266 blastzCe2,271 chainCe2,27 chainCe2,76 chainCe2,89 chainCe2,106 chainCe2,114 chainCe2,161 chainCe2,165 chainCe2,191 chainCe2,197 chainCe2,202 chainCe2,210 chainCe2,222 chainCe2,237 chainCe2,243 chainCe2,246 chainCe2,261 chainCe2,267 chainCe2,271 chainCe2,292 chainCe2,301 chainCe2,303 chainCe2,311 chainCe2,318 chainCe2,327 chainCe2,330 chainCe2,362 chainCe2,367 chainCe2,376 chainCe2,380 chainCe2,394 chainCe2,436 chainCe2,442 chainCe2,460 chainCe2,467 chainCe2,514 est,27 est,53 est,64 est,76 est,80 est,83 est,86 est,89 est,98 est,103 est,111 est,126 est,130 est,140 est,152 est,162 est,167 est,177 est,182 est,189 est,200 est,203 est,206 est,211 est,221 est,224 est,230 est,240 est,247 est,256 est,266 est,276 est,308 est,315 est,329 est,338 est,346 est,355 est,364 est,381 est,388 est,397 est,408 est,431 est,445 est,459 est,470 est,476 est,486 est,490 est,501 est,505 est,512 est,521 est,525 est,535 est,555 est,581 est,587 est,622 est,628 est,660 est,663 est,679 est,688 est,706 est,744 gap,13 gap,18 gap,28 gap,41 gap,47 gap,53 gap,69 gap,73 gap,78 gap,87 gap,110 gcPercent,13 gcPercent,18 gold,12 gold,16 gold,32 gold,79 gold,100 gold,123 gold,126 gold,136 gold,141 gold,150 gold,167 gold,172 gold,178 gold,192 gold,197 intronEst,28 intronEst,38 intronEst,90 intronEst,95 intronEst,102 intronEst,119 intronEst,131 intronEst,151 intronEst,155 intronEst,158 intronEst,161 intronEst,164 intronEst,173 intronEst,178 intronEst,186 intronEst,201 intronEst,205 intronEst,215 intronEst,227 intronEst,237 intronEst,242 intronEst,252 intronEst,257 intronEst,264 intronEst,275 intronEst,278 intronEst,281 intronEst,286 intronEst,296 intronEst,299 intronEst,305 intronEst,315 intronEst,322 intronEst,331 intronEst,341 intronEst,351 intronEst,383 intronEst,390 intronEst,404 intronEst,413 intronEst,421 intronEst,430 intronEst,439 intronEst,456 intronEst,463 intronEst,472 intronEst,483 intronEst,506 intronEst,520 intronEst,534 intronEst,545 intronEst,551 intronEst,561 intronEst,565 intronEst,576 intronEst,580 intronEst,587 intronEst,596 intronEst,600 intronEst,610 intronEst,630 intronEst,656 intronEst,662 intronEst,697 intronEst,703 intronEst,735 intronEst,738 intronEst,754 intronEst,763 intronEst,784 intronEst,822 microsat,43 microsat,46 microsat,56 microsat,82 microsat,84 microsat,91 mrna,13 mrna,25 mrna,34 mrna,45 mrna,57 mrna,72 mrna,76 mrna,86 mrna,98 mrna,108 mrna,113 mrna,123 mrna,128 mrna,135 mrna,146 mrna,149 mrna,152 mrna,157 mrna,167 mrna,170 mrna,176 mrna,186 mrna,193 mrna,202 mrna,212 mrna,222 mrna,254 mrna,261 mrna,275 mrna,284 mrna,292 mrna,301 mrna,310 mrna,327 mrna,334 mrna,345 mrna,362 mrna,365 mrna,376 mrna,379 mrna,395 mrna,404 mrna,410 mrna,423 mrna,461 rmsk,33 rmsk,40 rmsk,46 rmsk,60 rmsk,66 rmsk,75 rmsk,80 rmsk,87 rmsk,102 rmsk,174 rmsk,180 rmsk,184 rmsk,199 rmsk,201 rmsk,206 rmsk,208 rmsk,214 rmsk,219 rmsk,244 rmsk,250 rmsk,279 rmsk,295 simpleRepeat,60 twinscan,17 twinscan,60 twinscan,67 twinscan,72 twinscan,83 twinscan,106 twinscan,113 twinscan,124 twinscan,136 xenoRefGene,28 xenoRefGene,35 xenoRefGene,50 xenoRefGene,57 xenoRefGene,61 xenoRefGene,65 xenoRefGene,76 xenoRefGene,91 xenoRefGene,94 xenoRefGene,97 xenoRefGene,111 xenoRefGene,117 xenoRefGene,122 xenoRefGene,127 xenoRefGene,135 xenoRefGene,163 xenoRefGene,168 xenoRefGene,183 xenoRefGene,198 xenoRefGene,211 xenoRefGene,218 xenoRefGene,223 xenoRefGene,247 xenoRefGene,250 xenoRefGene,266 xenoRefGene,275 xenoRefGene,298 them rmsk,277 then chainCe2,314 chainCe2,373 gold,48 there est,590 intronEst,665 therefore gold,186 these augustusGene,95 augustusGene,190 blastzCe2,258 chainCe2,59 chainCe2,385 est,558 gap,15 gold,57 intronEst,633 microsat,24 rmsk,205 rmsk,228 rmsk,232 simpleRepeat,33 twinscan,156 they blastzCe2,49 chainCe2,233 thibaud-nissen xenoRefGene,326 this augustusGene,13 augustusGene,106 augustusGene,224 blastzCe2,13 blastzCe2,82 chainCe2,14 chainCe2,131 chainCe2,400 est,13 est,50 est,115 est,142 est,367 est,404 est,563 est,599 est,612 est,694 gap,8 gap,38 gap,75 gap,94 gcPercent,58 gold,9 gold,20 gold,133 gold,202 intronEst,14 intronEst,128 intronEst,190 intronEst,217 intronEst,442 intronEst,479 intronEst,638 intronEst,674 intronEst,687 intronEst,769 intronEst,772 microsat,11 microsat,50 microsat,99 mrna,31 mrna,61 mrna,88 mrna,313 mrna,341 rmsk,10 rmsk,51 rmsk,114 rmsk,303 simpleRepeat,12 simpleRepeat,31 twinscan,57 twinscan,121 xenoRefGene,12 xenoRefGene,38 xenoRefGene,47 xenoRefGene,85 xenoRefGene,140 xenoRefGene,179 xenoRefGene,215 xenoRefGene,281 those est,360 est,393 intronEst,435 intronEst,468 microsat,62 mrna,306 rmsk,238 xenoRefGene,229 thousands chainCe2,208 threshold chainCe2,391 through blastzCe2,138 gap,68 rmsk,268 xenoRefGene,90 tissue est,207 est,242 est,257 intronEst,282 intronEst,317 intronEst,332 mrna,153 mrna,188 mrna,203 tissues est,250 intronEst,325 mrna,196 to augustusGene,115 augustusGene,170 augustusGene,249 augustusGene,301 blastzCe2,28 blastzCe2,43 blastzCe2,56 blastzCe2,66 blastzCe2,91 blastzCe2,128 blastzCe2,149 blastzCe2,160 blastzCe2,185 blastzCe2,201 blastzCe2,225 blastzCe2,236 chainCe2,26 chainCe2,102 chainCe2,173 chainCe2,185 chainCe2,224 chainCe2,235 chainCe2,240 chainCe2,252 chainCe2,258 chainCe2,281 chainCe2,378 est,97 est,124 est,161 est,165 est,180 est,187 est,191 est,209 est,229 est,236 est,324 est,373 est,383 est,407 est,416 est,485 est,550 est,610 est,705 gold,39 gold,54 gold,76 gold,84 gold,115 gold,119 gold,195 intronEst,57 intronEst,172 intronEst,199 intronEst,236 intronEst,240 intronEst,255 intronEst,262 intronEst,266 intronEst,284 intronEst,304 intronEst,311 intronEst,399 intronEst,448 intronEst,458 intronEst,482 intronEst,491 intronEst,560 intronEst,625 intronEst,685 intronEst,783 microsat,18 microsat,38 microsat,121 mrna,70 mrna,107 mrna,111 mrna,126 mrna,133 mrna,137 mrna,155 mrna,175 mrna,182 mrna,270 mrna,319 mrna,329 mrna,344 mrna,422 rmsk,118 rmsk,226 rmsk,274 rmsk,286 rmsk,301 simpleRepeat,81 twinscan,26 twinscan,36 twinscan,87 twinscan,97 twinscan,142 xenoRefGene,115 xenoRefGene,151 xenoRefGene,158 xenoRefGene,182 xenoRefGene,208 together chainCe2,82 tolerate chainCe2,49 tool est,747 intronEst,825 mrna,464 xenoRefGene,308 tools rmsk,296 top blastzCe2,115 xenoRefGene,95 track augustusGene,14 augustusGene,107 blastzCe2,14 blastzCe2,34 blastzCe2,69 blastzCe2,76 blastzCe2,83 blastzCe2,101 blastzCe2,118 blastzCe2,133 blastzCe2,143 blastzCe2,148 blastzCe2,154 blastzCe2,163 blastzCe2,171 blastzCe2,181 chainCe2,15 chainCe2,78 chainCe2,254 chainCe2,401 est,14 est,51 est,116 est,141 est,153 est,368 est,613 est,695 gap,9 gap,39 gcPercent,16 gcPercent,59 gold,10 gold,134 gold,203 intronEst,15 intronEst,123 intronEst,129 intronEst,191 intronEst,216 intronEst,228 intronEst,443 intronEst,688 intronEst,770 intronEst,773 microsat,12 microsat,51 microsat,59 microsat,87 mrna,15 mrna,32 mrna,62 mrna,87 mrna,99 mrna,314 mrna,412 rmsk,11 rmsk,52 rmsk,115 rmsk,304 simpleRepeat,13 twinscan,58 twinscan,68 twinscan,79 twinscan,114 xenoRefGene,13 xenoRefGene,39 xenoRefGene,48 xenoRefGene,86 xenoRefGene,98 xenoRefGene,141 xenoRefGene,170 xenoRefGene,282 tracks augustusGene,41 est,59 est,413 intronEst,137 intronEst,488 mrna,40 mrna,352 twinscan,66 xenoRefGene,56 traditional chainCe2,41 trained augustusGene,150 training augustusGene,162 augustusGene,176 augustusGene,180 augustusGene,199 augustusGene,228 augustusGene,243 augustusGene,259 augustusGene,273 transcribed est,44 est,427 intronEst,55 intronEst,502 transcript est,522 intronEst,597 transcriptase est,478 intronEst,553 transcription est,101 est,461 est,508 est,530 intronEst,176 intronEst,536 intronEst,583 intronEst,605 transcripts augustusGene,124 xenoRefGene,379 translation augustusGene,57 transposons chainCe2,286 chainCe2,312 trends rmsk,324 trf simpleRepeat,7 simpleRepeat,26 simpleRepeat,61 simpleRepeat,67 tri-nucleotide microsat,5 microsat,34 trna rmsk,161 true augustusGene,132 turn blastzCe2,96 chainCe2,241 xenoRefGene,133 twinscan twinscan,1 twinscan,2 twinscan,18 twinscan,30 twinscan,125 type blastzCe2,213 blastzCe2,242 est,169 est,199 gold,207 intronEst,244 intronEst,274 mrna,115 mrna,145 types augustusGene,89 est,248 gap,81 intronEst,323 mrna,194 typically est,33 est,430 gcPercent,52 intronEst,44 intronEst,505 u chainCe2,523 ucsc blastzCe2,277 est,699 gcPercent,63 intronEst,777 mrna,416 rmsk,211 xenoRefGene,286 ultracontigs gold,63 gold,89 gold,117 undergone xenoRefGene,69 underlying xenoRefGene,37 university chainCe2,409 chainCe2,443 twinscan,151 unknown rmsk,173 unprocessed chainCe2,188 est,573 intronEst,648 unsequenced chainCe2,145 unspliced est,8 est,602 intronEst,117 intronEst,677 up gold,140 rmsk,117 update est,726 intronEst,804 mrna,443 rmsk,82 rmsk,94 rmsk,307 rmsk,314 xenoRefGene,344 updated xenoRefGene,41 use est,166 gold,151 intronEst,241 mrna,112 used augustusGene,146 augustusGene,174 augustusGene,183 augustusGene,231 augustusGene,246 blastzCe2,90 est,123 est,264 est,323 est,541 gold,38 gold,75 gold,83 gold,114 intronEst,198 intronEst,339 intronEst,398 intronEst,616 mrna,69 mrna,210 mrna,269 rmsk,213 rmsk,258 rmsk,300 useful microsat,20 user est,382 intronEst,457 mrna,328 users xenoRefGene,150 uses rmsk,79 using augustusGene,294 blastzCe2,79 blastzCe2,276 chainCe2,31 chainCe2,326 est,624 gold,50 intronEst,699 microsat,90 mrna,364 rmsk,15 rmsk,249 twinscan,5 xenoRefGene,227 usually est,40 intronEst,51 v3.1 augustusGene,7 valid est,214 intronEst,289 mrna,160 validate xenoRefGene,153 validation twinscan,99 value est,274 intronEst,349 mrna,220 variation microsat,7 rmsk,6 simpleRepeat,8 vb blastzCe2,285 chainCe2,481 vector est,438 intronEst,513 version augustusGene,23 augustusGene,263 gold,21 rmsk,58 versions augustusGene,279 rmsk,217 rmsk,233 vertebrates augustusGene,209 very est,645 intronEst,720 via blastzCe2,124 view est,210 intronEst,285 mrna,156 viewed est,606 gold,143 intronEst,681 w blastzCe2,287 blastzCe2,315 chainCe2,483 chainCe2,503 chainCe2,551 gold,209 waack augustusGene,318 was augustusGene,230 augustusGene,245 augustusGene,264 augustusGene,280 blastzCe2,274 chainCe2,372 chainCe2,404 chainCe2,439 est,667 est,696 gcPercent,60 gold,22 gold,37 gold,82 gold,95 intronEst,742 intronEst,774 microsat,108 mrna,383 mrna,413 rmsk,12 simpleRepeat,68 xenoRefGene,254 xenoRefGene,283 washington twinscan,150 web twinscan,45 webb chainCe2,418 chainCe2,455 weekly xenoRefGene,42 well augustusGene,78 est,510 est,533 intronEst,585 intronEst,608 rmsk,54 were augustusGene,50 augustusGene,66 augustusGene,125 augustusGene,149 augustusGene,182 blastzCe2,260 chainCe2,298 chainCe2,306 chainCe2,313 chainCe2,321 chainCe2,333 chainCe2,392 chainCe2,427 chainCe2,469 est,560 est,619 est,691 gold,47 gold,59 gold,113 intronEst,635 intronEst,694 mrna,359 mrna,407 xenoRefGene,220 xenoRefGene,237 xenoRefGene,278 wgs gold,30 wheeler est,723 intronEst,801 mrna,440 when augustusGene,188 augustusGene,238 blastzCe2,168 blastzCe2,246 est,146 est,156 est,652 intronEst,35 intronEst,221 intronEst,231 intronEst,727 mrna,92 mrna,102 mrna,368 xenoRefGene,239 where chainCe2,152 gold,158 which augustusGene,159 augustusGene,227 blastzCe2,48 blastzCe2,121 blastzCe2,195 chainCe2,231 chainCe2,337 est,106 est,233 est,467 est,492 est,639 gold,91 intronEst,181 intronEst,308 intronEst,542 intronEst,567 intronEst,714 mrna,179 rmsk,21 rmsk,64 rmsk,129 rmsk,142 rmsk,167 simpleRepeat,27 while chainCe2,176 white gap,64 whole gold,27 gold,211 wildcards est,260 intronEst,335 mrna,206 will blastzCe2,182 est,293 est,311 est,340 est,357 gap,24 intronEst,368 intronEst,386 intronEst,415 intronEst,432 mrna,239 mrna,257 mrna,286 mrna,303 window gcPercent,32 windows gcPercent,8 gcPercent,33 gcPercent,43 wish est,235 intronEst,310 mrna,181 xenoRefGene,207 with augustusGene,127 augustusGene,322 blastzCe2,318 chainCe2,167 chainCe2,178 chainCe2,308 chainCe2,420 chainCe2,452 chainCe2,554 est,105 est,469 est,607 est,644 est,687 gap,17 gcPercent,34 gcPercent,44 gcPercent,54 gold,69 gold,105 intronEst,180 intronEst,544 intronEst,682 intronEst,719 intronEst,762 microsat,69 microsat,76 mrna,403 rmsk,195 simpleRepeat,52 xenoRefGene,230 xenoRefGene,274 within blastzCe2,178 est,139 est,520 est,676 gold,180 gold,201 intronEst,214 intronEst,595 intronEst,751 mrna,85 mrna,392 simpleRepeat,37 xenoRefGene,84 xenoRefGene,263 wj blastzCe2,303 chainCe2,497 chainCe2,539 est,742 intronEst,820 mrna,459 xenoRefGene,304 worldwide est,713 intronEst,791 mrna,430 xenoRefGene,294 written microsat,109 simpleRepeat,69 ws120 blastzCe2,7 blastzCe2,26 chainCe2,7 chainCe2,24 ws98 twinscan,10 yap blastzCe2,284 chainCe2,480 yielding gold,97 you blastzCe2,247 est,234 intronEst,309 mrna,180 xenoRefGene,206 z blastzCe2,307 chainCe2,543 zebrafish augustusGene,202 augustusGene,278 zhang blastzCe2,306 chainCe2,416 chainCe2,542 zheng chainCe2,415 zoomed-in twinscan,95