0 uniprot,1822 0.2 augustusGene,136 0.5 augustusGene,138 est,709 intronEst,745 mrna,425 xenoRefGene,264 000 est,669 intronEst,705 1 augustusGene,310 chainDm2,563 ensGene,200 ensGene,202 est,792 genscan,227 intronEst,803 mrna,509 netDm2,75 netDm2,206 netDm2,540 uniprot,1110 uniprot,1314 uniprot,1346 uniprot,1490 uniprot,1927 xenoMrna,458 xenoMrna,514 xenoRefGene,387 1.8 gold,65 scaffolds,68 10 geneid,192 uniprot,1928 100 augustusGene,134 chainDm2,531 microsat,70 netDm2,508 1000-2000 augustusGene,161 1000000 uniprot,1824 103-7 chainDm2,564 netDm2,541 10779490 geneid,196 10973072 rmsk,325 11484-9 chainDm2,533 netDm2,510 115-26 chainDm2,495 11752248 ensGene,205 11928468 chainDm2,497 11932250 est,816 mrna,533 xenoRefGene,317 12 est,812 intronEst,819 mrna,529 xenoMrna,530 xenoRefGene,313 12529312 chainDm2,566 netDm2,543 127-163 genscan,206 13 chainDm2,562 netDm2,539 14500911 chainDm2,535 netDm2,512 14534192 augustusGene,340 14681350 est,798 mrna,515 15 microsat,30 microsat,79 microsat,130 simpleRepeat,90 xenoRefGene,236 15108278 uniprot,2051 15608248 xenoRefGene,393 16 rmsk,321 17 gold,87 scaffolds,90 18218656 augustusGene,315 18428791 geneid,177 19 augustusGene,335 1990 blastDm2FB,185 blastHg17KG,174 1997 genscan,149 genscan,223 1998 genscan,167 genscan,204 1999 microsat,103 microsat,128 simpleRepeat,65 simpleRepeat,88 2 augustusGene,142 augustusGene,337 microsat,66 microsat,132 netDm2,109 netDm2,114 simpleRepeat,92 uniprot,1121 uniprot,1331 2-3 uniprot,1572 2.7 gold,58 scaffolds,61 20 chainDm2,532 netDm2,509 2000 geneid,190 rmsk,100 rmsk,319 2002 chainDm2,494 ensGene,47 ensGene,198 est,810 intronEst,817 mrna,527 xenoMrna,528 xenoRefGene,311 2003 augustusGene,333 chainDm2,528 chainDm2,560 netDm2,505 netDm2,537 2004 blastDm2FB,7 chainDm2,7 chainDm2,78 est,790 intronEst,801 mrna,507 netDm2,7 netDm2,58 uniprot,2045 xenoMrna,512 2005 blastDm2FB,41 xenoRefGene,385 2007 geneid,170 2008 augustusGene,308 2012 uniprot,2000 2013 est,765 mrna,482 2014 xenoRefGene,352 2022_03 uniprot,1911 2023 uniprot,1191 215 blastDm2FB,188 blastHg17KG,177 22102590 uniprot,2007 2231712 blastHg17KG,181 225 gold,149 scaffolds,152 229 gold,159 scaffolds,162 23 uniprot,2047 23193287 est,772 mrna,489 24 augustusGene,311 24259432 xenoRefGene,359 243 geneid,160 geneid,183 25 blastDm2FB,39 genscan,225 xenoMrna,465 xenoRefGene,271 268 genscan,226 27 microsat,131 simpleRepeat,91 3 augustusGene,140 blastDm2FB,189 blastHg17KG,178 est,481 est,534 est,588 intronEst,108 intronEst,517 intronEst,570 intronEst,624 microsat,68 netDm2,121 uniprot,1123 uniprot,1194 xenoMrna,90 3.1 augustusGene,24 30 chainDm2,530 ensGene,201 netDm2,507 32 est,793 intronEst,78 intronEst,804 mrna,510 xenoMrna,515 33 xenoRefGene,388 343 gold,139 scaffolds,142 36 gold,130 scaffolds,133 38-41 ensGene,203 39s ensGene,163 4 est,813 geneid,173 geneid,193 intronEst,820 mrna,530 xenoMrna,531 xenoRefGene,314 4.3 geneid,175 40 uniprot,2002 403-10 blastHg17KG,179 403-410 blastDm2FB,190 41 est,767 mrna,484 418-20 rmsk,323 42 xenoRefGene,354 464-70 uniprot,2049 5 augustusGene,312 blastDm2FB,187 blastHg17KG,176 est,478 est,519 est,545 intronEst,514 intronEst,555 intronEst,581 uniprot,2048 xenoMrna,88 5-base gc5Base,6 gc5Base,27 500 est,35 intronEst,46 511-5 geneid,194 573-80 microsat,133 simpleRepeat,93 60 blastDm2FB,121 blastDm2FB,133 blastDm2FB,141 blastHg17KG,110 blastHg17KG,122 blastHg17KG,130 637-44 augustusGene,313 655 gold,83 scaffolds,86 656-64 est,814 intronEst,821 mrna,531 xenoMrna,532 xenoRefGene,315 7 gold,82 scaffolds,85 7.5x gold,71 scaffolds,74 750 est,668 intronEst,704 78-94 genscan,228 9 rmsk,322 9149143 genscan,230 93 uniprot,1483 96 est,716 intronEst,752 mrna,432 9862982 microsat,135 simpleRepeat,95 _alt uniprot,1419 _fix uniprot,1421 a augustusGene,116 augustusGene,128 augustusGene,152 augustusGene,215 augustusGene,218 augustusGene,233 augustusGene,323 augustusGene,328 blastDm2FB,44 blastDm2FB,86 blastDm2FB,96 blastHg17KG,75 blastHg17KG,85 brhInparalog,40 brhInparalog,44 chainDm2,21 chainDm2,26 chainDm2,50 chainDm2,111 chainDm2,123 chainDm2,166 chainDm2,171 chainDm2,303 chainDm2,347 chainDm2,352 chainDm2,354 chainDm2,358 chainDm2,362 chainDm2,385 chainDm2,394 chainDm2,503 chainDm2,527 chainDm2,543 ensGene,31 est,1 est,4 est,18 est,118 est,135 est,170 est,196 est,269 est,388 est,468 est,472 est,598 est,624 est,632 est,646 est,685 est,704 gap,59 gap,63 gap,90 gap,96 gap,99 gc5Base,44 geneid,52 geneid,63 geneid,114 genscan,102 genscan,132 gold,18 gold,37 gold,238 intronEst,3 intronEst,19 intronEst,111 intronEst,120 intronEst,145 intronEst,193 intronEst,210 intronEst,245 intronEst,271 intronEst,452 intronEst,504 intronEst,508 intronEst,634 intronEst,660 intronEst,668 intronEst,682 intronEst,721 intronEst,740 microsat,53 microsat,119 modelRefGene,30 mrna,1 mrna,4 mrna,19 mrna,64 mrna,81 mrna,116 mrna,142 mrna,215 mrna,334 mrna,388 mrna,401 mrna,420 netDm2,23 netDm2,31 netDm2,141 netDm2,151 netDm2,155 netDm2,222 netDm2,239 netDm2,242 netDm2,292 netDm2,306 netDm2,312 netDm2,318 netDm2,322 netDm2,325 netDm2,353 netDm2,480 netDm2,504 netDm2,520 rmsk,36 rmsk,56 rmsk,196 rmsk,308 scaffolds,21 scaffolds,40 simpleRepeat,79 uniprot,140 uniprot,311 uniprot,418 uniprot,459 uniprot,480 uniprot,490 uniprot,523 uniprot,603 uniprot,622 uniprot,708 uniprot,740 uniprot,759 uniprot,805 uniprot,965 uniprot,976 uniprot,988 uniprot,1001 uniprot,1048 uniprot,1071 uniprot,1152 uniprot,1164 uniprot,1179 uniprot,1217 uniprot,1226 uniprot,1234 uniprot,1239 uniprot,1286 uniprot,1458 uniprot,1599 uniprot,1634 uniprot,1735 uniprot,1779 uniprot,1807 uniprot,1922 uniprot,1949 uniprot,2017 uniprot,2023 uniprot,2032 xenoMrna,29 xenoMrna,109 xenoMrna,138 xenoMrna,155 xenoMrna,190 xenoMrna,216 xenoMrna,397 xenoMrna,426 xenoMrna,433 xenoMrna,453 xenoRefGene,24 xenoRefGene,224 xenoRefGene,240 xenoRefGene,259 xenoRefGene,329 xenoRefGene,372 aa unipModif,1 ab augustusGene,3 augustusGene,16 abbreviated chainDm2,311 about est,34 est,414 genscan,127 gold,64 gold,70 gold,166 intronEst,45 intronEst,478 microsat,98 mrna,351 netDm2,147 netDm2,160 netDm2,342 scaffolds,67 scaffolds,73 scaffolds,169 simpleRepeat,59 xenoMrna,414 xenoRefGene,178 above netDm2,219 netDm2,231 netDm2,251 uniprot,1525 abundance chainDm2,147 acad chainDm2,523 netDm2,500 acceptor genscan,32 access ensGene,56 ensGene,100 uniprot,896 uniprot,1706 uniprot,1838 accession xenoRefGene,118 xenoRefGene,130 according augustusGene,114 acid blastDm2FB,75 blastHg17KG,64 unipModif,5 unipMut,4 uniprot,339 uniprot,351 acids blastDm2FB,147 blastHg17KG,136 ensGene,196 est,763 est,788 intronEst,799 microsat,126 mrna,480 mrna,505 simpleRepeat,86 uniprot,620 uniprot,1998 xenoMrna,510 xenoRefGene,350 xenoRefGene,383 acronym uniprot,546 added uniprot,1187 additional rmsk,254 admin uniprot,1917 advice chainDm2,423 chainDm2,455 netDm2,442 affine chainDm2,36 after netDm2,400 uniprot,294 uniprot,1329 ag intronEst,85 again uniprot,629 uniprot,1500 against est,653 intronEst,37 intronEst,689 mrna,344 mrna,393 xenoMrna,407 xenoMrna,424 xenoRefGene,222 aka gold,185 al ensGene,46 ensGene,189 xenoRefGene,341 alejo uniprot,1966 algorithm augustusGene,130 algorithms uniprot,52 align est,683 intronEst,719 uniprot,1216 aligned blastDm2FB,58 blastDm2FB,83 blastHg17KG,48 blastHg17KG,72 chainDm2,314 est,652 est,688 intronEst,36 intronEst,149 intronEst,688 intronEst,724 mrna,392 mrna,404 uniprot,783 uniprot,973 uniprot,1007 uniprot,1246 uniprot,1335 uniprot,1472 xenoMrna,423 xenoMrna,436 xenoRefGene,221 xenoRefGene,243 aligning chainDm2,100 chainDm2,246 chainDm2,276 est,400 intronEst,464 uniprot,952 alignment blastDm2FB,179 blastHg17KG,168 chainDm2,223 est,58 est,423 est,429 est,441 est,693 est,806 intronEst,136 intronEst,729 intronEst,813 mrna,39 mrna,362 mrna,368 mrna,380 mrna,409 mrna,523 netDm2,11 unipAliSwissprot,4 unipAliTrembl,4 uniprot,108 uniprot,135 uniprot,191 uniprot,807 uniprot,914 uniprot,1175 uniprot,1429 uniprot,1523 uniprot,1620 uniprot,1629 uniprot,1636 uniprot,1642 uniprot,1704 uniprot,1862 xenoMrna,43 xenoMrna,441 xenoMrna,524 xenoRefGene,232 xenoRefGene,248 xenoRefGene,307 alignments augustusGene,300 blastDm2FB,21 blastHg17KG,19 chainDm2,12 chainDm2,24 chainDm2,325 chainDm2,328 chainDm2,345 chainDm2,373 chainDm2,490 chainDm2,555 est,16 est,702 intronEst,17 intronEst,738 mrna,17 mrna,418 netDm2,134 netDm2,258 netDm2,532 rmsk,265 uniprot,82 uniprot,100 uniprot,637 uniprot,793 uniprot,814 uniprot,876 uniprot,1138 uniprot,1148 uniprot,1161 uniprot,1309 uniprot,1410 uniprot,1487 xenoMrna,17 xenoMrna,451 xenoRefGene,257 all augustusGene,207 chainDm2,343 chainDm2,366 est,192 est,246 est,301 est,396 est,488 gold,246 intronEst,114 intronEst,267 intronEst,321 intronEst,365 intronEst,460 intronEst,524 mrna,138 mrna,192 mrna,247 rmsk,65 uniprot,89 uniprot,121 uniprot,204 uniprot,395 uniprot,956 uniprot,1107 uniprot,1167 uniprot,1311 uniprot,1337 uniprot,1343 uniprot,1418 uniprot,1542 uniprot,1685 uniprot,1979 xenoMrna,212 xenoMrna,266 xenoMrna,310 all-vs-all brhInparalog,88 allowed est,664 intronEst,700 allows augustusGene,168 chainDm2,31 est,391 intronEst,455 mrna,337 xenoMrna,400 xenoRefGene,149 aln unipAliSwissprot,2 unipAliTrembl,2 alone augustusGene,33 along geneid,80 already netDm2,303 also blastDm2FB,149 blastHg17KG,138 chainDm2,42 ensGene,48 est,273 est,381 est,432 est,601 intronEst,337 intronEst,445 intronEst,637 mrna,219 mrna,327 mrna,371 uniprot,666 uniprot,706 uniprot,1799 xenoMrna,282 xenoMrna,390 alt uniprot,850 alter est,129 intronEst,204 mrna,75 xenoMrna,149 alternating gold,203 alternative augustusGene,122 unipAliSwissprot,16 uniprot,163 uniprot,670 alternatives-from-sampling augustusGene,131 altschul blastDm2FB,167 blastHg17KG,156 alus rmsk,131 always uniprot,503 uniprot,960 uniprot,1411 uniprot,1579 xenoMrna,87 amel_2.0 gold,13 gold,33 gold,172 scaffolds,16 scaffolds,36 scaffolds,175 amino blastDm2FB,74 blastDm2FB,146 blastHg17KG,63 blastHg17KG,135 unipModif,4 unipMut,3 uniprot,338 uniprot,350 uniprot,619 among brhInparalog,78 amount rmsk,185 amsterdam genscan,201 an blastDm2FB,103 blastHg17KG,92 chainDm2,119 chainDm2,146 chainDm2,152 est,450 est,497 est,580 gc5Base,65 intronEst,61 intronEst,486 intronEst,533 intronEst,616 rmsk,311 uniprot,765 uniprot,899 uniprot,1203 uniprot,1467 uniprot,1568 xenoRefGene,143 xenoRefGene,231 xenoRefGene,343 analysis uniprot,1648 uniprot,1728 analyze microsat,122 simpleRepeat,82 and augustusGene,9 augustusGene,60 augustusGene,74 augustusGene,87 augustusGene,206 augustusGene,271 augustusGene,277 augustusGene,296 augustusGene,327 blastDm2FB,13 blastDm2FB,28 blastDm2FB,137 blastHg17KG,11 blastHg17KG,26 blastHg17KG,126 brhInparalog,8 brhInparalog,96 chainDm2,49 chainDm2,64 chainDm2,195 chainDm2,201 chainDm2,213 chainDm2,226 chainDm2,308 chainDm2,334 chainDm2,351 chainDm2,360 chainDm2,419 chainDm2,434 chainDm2,459 chainDm2,465 chainDm2,476 chainDm2,513 chainDm2,518 ensGene,6 ensGene,128 est,10 est,26 est,48 est,88 est,132 est,293 est,457 est,471 est,479 est,607 est,713 gap,5 gap,44 gap,62 gc5Base,9 gc5Base,22 gc5Base,74 geneid,7 geneid,73 geneid,78 genscan,7 genscan,30 genscan,40 genscan,46 genscan,63 genscan,83 genscan,97 genscan,108 genscan,119 genscan,138 genscan,147 gold,6 gold,43 gold,47 gold,69 gold,94 gold,151 gold,205 gold,220 gold,227 intronEst,11 intronEst,27 intronEst,82 intronEst,126 intronEst,163 intronEst,207 intronEst,357 intronEst,493 intronEst,507 intronEst,515 intronEst,643 intronEst,749 microsat,4 microsat,8 microsat,33 microsat,36 microsat,67 microsat,72 microsat,75 modelRefGene,7 mrna,10 mrna,24 mrna,29 mrna,78 mrna,239 mrna,358 mrna,429 netDm2,41 netDm2,66 netDm2,123 netDm2,269 netDm2,347 netDm2,379 netDm2,390 netDm2,399 netDm2,409 netDm2,438 netDm2,453 netDm2,460 netDm2,471 netDm2,490 netDm2,495 rmsk,7 rmsk,28 rmsk,108 rmsk,191 rmsk,222 rmsk,289 rmsk,295 rmsk,310 scaffolds,5 scaffolds,46 scaffolds,50 scaffolds,72 scaffolds,97 scaffolds,154 simpleRepeat,9 simpleRepeat,42 unipAliSwissprot,19 unipAliTrembl,11 unipChain,9 unipConflict,7 unipDisulfBond,7 unipDomain,5 unipInterest,7 unipLocCytopl,6 unipLocExtra,6 unipLocSignal,7 unipLocTransMemb,6 unipModif,8 unipMut,7 unipOther,7 unipRepeat,5 unipStruct,9 uniprot,8 uniprot,17 uniprot,174 uniprot,329 uniprot,345 uniprot,355 uniprot,369 uniprot,378 uniprot,403 uniprot,433 uniprot,439 uniprot,448 uniprot,488 uniprot,517 uniprot,568 uniprot,589 uniprot,611 uniprot,617 uniprot,702 uniprot,761 uniprot,796 uniprot,866 uniprot,926 uniprot,939 uniprot,1122 uniprot,1214 uniprot,1310 uniprot,1342 uniprot,1375 uniprot,1420 uniprot,1465 uniprot,1498 uniprot,1598 uniprot,1617 uniprot,1650 uniprot,1691 uniprot,1790 uniprot,1898 uniprot,1958 uniprot,1970 uniprot,2028 uniprot,2036 xenoMrna,9 xenoMrna,20 xenoMrna,33 xenoMrna,152 xenoMrna,302 xenoMrna,462 xenoRefGene,8 xenoRefGene,17 xenoRefGene,45 xenoRefGene,79 xenoRefGene,129 xenoRefGene,154 xenoRefGene,187 xenoRefGene,200 xenoRefGene,268 xenoRefGene,295 xenoRefGene,380 annot unipOther,2 annotated rmsk,67 uniprot,736 uniprot,994 uniprot,1014 uniprot,1027 uniprot,1034 uniprot,1040 uniprot,1053 uniprot,1082 uniprot,1233 uniprot,1265 annotation ensGene,165 modelRefGene,23 modelRefGene,36 netDm2,53 rmsk,38 uniprot,143 uniprot,466 uniprot,487 uniprot,530 uniprot,605 uniprot,624 uniprot,1731 annotationonprotein uniprot,1929 annotations ensGene,156 genscan,120 unipOther,5 unipStruct,7 uniprot,6 uniprot,18 uniprot,54 uniprot,96 uniprot,128 uniprot,171 uniprot,212 uniprot,363 uniprot,394 uniprot,397 uniprot,455 uniprot,501 uniprot,595 uniprot,631 uniprot,662 uniprot,704 uniprot,718 uniprot,763 uniprot,1438 uniprot,1504 uniprot,1514 uniprot,1757 xenoRefGene,188 anonymous geneid,58 any est,316 est,550 intronEst,380 intronEst,586 mrna,262 uniprot,660 uniprot,1146 uniprot,1250 xenoMrna,325 api ensGene,109 apimel2 ensGene,80 uniprot,1816 apply est,188 intronEst,263 mrna,134 xenoMrna,208 approach uniprot,1531 appropriate xenoRefGene,112 approximately gold,57 scaffolds,60 apr blastDm2FB,6 chainDm2,6 chainDm2,77 est,811 geneid,191 genscan,224 intronEst,818 mrna,528 netDm2,6 netDm2,57 xenoMrna,529 xenoRefGene,312 apsects gc5Base,51 archive ensGene,142 uniprot,893 uniprot,1670 uniprot,1908 archives uniprot,1832 are augustusGene,27 chainDm2,107 chainDm2,162 chainDm2,178 chainDm2,189 chainDm2,235 chainDm2,401 ensGene,81 ensGene,121 est,30 est,67 est,149 est,159 gap,32 geneid,76 geneid,90 geneid,96 genscan,25 genscan,160 gold,116 gold,197 gold,215 gold,251 intronEst,41 intronEst,224 intronEst,234 intronEst,759 microsat,16 microsat,25 microsat,52 mrna,48 mrna,95 mrna,105 netDm2,77 netDm2,98 netDm2,105 netDm2,188 rmsk,43 rmsk,240 rmsk,247 rmsk,263 rmsk,271 scaffolds,119 simpleRepeat,49 uniprot,55 uniprot,93 uniprot,124 uniprot,146 uniprot,165 uniprot,175 uniprot,208 uniprot,456 uniprot,502 uniprot,555 uniprot,579 uniprot,596 uniprot,644 uniprot,679 uniprot,735 uniprot,868 uniprot,880 uniprot,1006 uniprot,1013 uniprot,1033 uniprot,1061 uniprot,1086 uniprot,1117 uniprot,1149 uniprot,1318 uniprot,1350 uniprot,1425 uniprot,1433 uniprot,1454 uniprot,1659 uniprot,1867 uniprot,1895 xenoMrna,52 xenoMrna,118 xenoMrna,169 xenoMrna,179 xenoRefGene,40 xenoRefGene,105 xenoRefGene,203 areas gc5Base,37 arian chainDm2,432 netDm2,451 rmsk,16 rmsk,287 arrays geneid,86 as augustusGene,77 augustusGene,79 blastDm2FB,37 ensGene,87 est,597 gap,34 geneid,98 genscan,35 genscan,37 intronEst,633 microsat,21 netDm2,150 netDm2,190 netDm2,213 netDm2,228 netDm2,296 netDm2,351 rmsk,53 rmsk,55 uniprot,307 uniprot,598 uniprot,600 uniprot,621 uniprot,1100 uniprot,1778 xenoMrna,125 xenoMrna,130 ascii uniprot,1762 assembled geneid,131 geneid,140 gold,62 gold,193 scaffolds,65 assemblies augustusGene,196 augustusGene,237 chainDm2,234 assembly augustusGene,197 chainDm2,83 chainDm2,117 chainDm2,125 gap,14 gap,76 gold,1 gold,2 gold,15 gold,54 gold,79 gold,128 gold,147 gold,157 gold,168 netDm2,63 scaffolds,2 scaffolds,18 scaffolds,57 scaffolds,82 scaffolds,131 scaffolds,150 scaffolds,160 scaffolds,171 uniprot,445 uniprot,701 associated est,110 gc5Base,34 intronEst,185 rmsk,194 simpleRepeat,51 uniprot,787 astashyn xenoRefGene,328 at blastDm2FB,139 blastHg17KG,128 brhInparalog,21 chainDm2,408 chainDm2,443 chainDm2,448 est,265 est,549 est,594 est,714 est,730 gold,28 gold,271 intronEst,67 intronEst,76 intronEst,101 intronEst,585 intronEst,630 intronEst,750 intronEst,769 microsat,28 microsat,77 mrna,211 mrna,430 mrna,447 netDm2,107 netDm2,291 netDm2,414 netDm2,427 scaffolds,31 scaffolds,186 uniprot,825 uniprot,1946 uniprot,1991 xenoMrna,463 xenoMrna,480 xenoRefGene,93 xenoRefGene,269 xenoRefGene,285 atlas gold,56 scaffolds,59 attempt est,581 intronEst,617 augustus augustusGene,1 augustusGene,2 augustusGene,22 augustusGene,148 augustusGene,256 uniprot,835 uniprot,867 automated uniprot,1468 uniprot,1727 automatically uniprot,1565 av uniprot,2015 available augustusGene,239 ensGene,82 ensGene,122 rmsk,73 rmsk,225 rmsk,242 uniprot,881 uniprot,1660 uniprot,1981 aware uniprot,1456 axt chainDm2,332 axtchain chainDm2,340 chainDm2,341 chainDm2,439 axts chainDm2,337 bac gold,44 scaffolds,47 back chainDm2,322 baertsch augustusGene,290 chainDm2,475 chainDm2,500 chainDm2,546 netDm2,470 netDm2,477 netDm2,523 bairoch uniprot,2022 barcelona geneid,46 barker ensGene,170 base est,386 est,420 est,697 est,705 est,717 intronEst,450 intronEst,733 intronEst,741 intronEst,753 mrna,359 mrna,413 mrna,421 mrna,433 rmsk,187 rmsk,189 rmsk,192 xenoMrna,445 xenoMrna,454 xenoMrna,466 xenoRefGene,252 xenoRefGene,260 xenoRefGene,272 based augustusGene,28 brhInparalog,23 chainDm2,237 chainDm2,263 genscan,26 uniprot,60 uniprot,727 uniprot,1604 bases est,36 est,397 est,670 gc5Base,25 intronEst,47 intronEst,79 intronEst,461 intronEst,706 basic blastDm2FB,177 blastHg17KG,166 basis uniprot,1570 baylor gold,29 gold,51 gold,171 gold,272 scaffolds,32 scaffolds,54 scaffolds,174 scaffolds,187 bdgp blastDm2FB,8 chainDm2,8 chainDm2,79 netDm2,8 netDm2,59 be augustusGene,99 chainDm2,59 ensGene,61 ensGene,104 ensGene,138 est,109 est,122 est,144 est,253 est,263 est,274 est,305 est,323 est,333 est,382 est,433 est,529 est,637 gap,25 gc5Base,41 gold,106 gold,112 intronEst,58 intronEst,184 intronEst,197 intronEst,219 intronEst,328 intronEst,338 intronEst,369 intronEst,387 intronEst,397 intronEst,446 intronEst,565 intronEst,673 microsat,19 microsat,39 mrna,68 mrna,90 mrna,199 mrna,209 mrna,220 mrna,251 mrna,269 mrna,279 mrna,328 mrna,372 netDm2,117 rmsk,235 rmsk,257 scaffolds,109 scaffolds,115 simpleRepeat,44 uniprot,181 uniprot,246 uniprot,1094 uniprot,1105 uniprot,1143 uniprot,1197 uniprot,1270 uniprot,1327 uniprot,1556 uniprot,1694 uniprot,1715 uniprot,1740 uniprot,1750 uniprot,1759 uniprot,1770 uniprot,1793 uniprot,1800 uniprot,1882 xenoMrna,142 xenoMrna,164 xenoMrna,273 xenoMrna,283 xenoMrna,314 xenoMrna,332 xenoMrna,342 xenoMrna,391 xenoRefGene,88 bears est,94 intronEst,169 because est,629 intronEst,665 uniprot,674 xenoMrna,104 been chainDm2,297 intronEst,8 rmsk,70 uniprot,34 uniprot,47 uniprot,303 uniprot,1043 before est,566 intronEst,602 netDm2,398 uniprot,934 below chainDm2,393 ensGene,54 genscan,154 genscan,168 rmsk,105 uniprot,73 uniprot,92 uniprot,189 uniprot,207 uniprot,769 uniprot,898 benson est,747 est,775 intronEst,786 microsat,102 microsat,112 microsat,114 mrna,464 mrna,492 simpleRepeat,64 simpleRepeat,72 simpleRepeat,74 xenoMrna,497 best blastDm2FB,114 blastHg17KG,103 est,712 intronEst,748 mrna,428 netDm2,20 netDm2,200 uniprot,1074 uniprot,1415 xenoMrna,461 xenoRefGene,267 beta uniprot,364 better est,74 mrna,55 xenoMrna,59 between chainDm2,346 est,17 est,85 gap,86 gap,107 gold,217 gold,232 intronEst,18 intronEst,160 mrna,18 netDm2,345 uniprot,375 uniprot,922 uniprot,1371 uniprot,1615 bias uniprot,400 bigbed uniprot,1736 bigbedtobed uniprot,1767 uniprot,1812 binaries uniprot,1791 binary uniprot,1781 biocomput chainDm2,493 bioinformatics augustusGene,307 augustusGene,332 geneid,169 biol blastDm2FB,184 blastHg17KG,173 genscan,222 biological uniprot,320 biology geneid,27 geneid,146 genscan,200 birds augustusGene,203 birney ensGene,172 black gap,35 gap,70 blanco geneid,155 geneid,180 blast blastDm2FB,158 blastDm2FB,165 blastHg17KG,147 blastHg17KG,154 uniprot,949 uniprot,1084 uniprot,1115 blast-like est,805 intronEst,812 mrna,522 xenoMrna,523 xenoRefGene,306 blastz chainDm2,316 chainDm2,405 chainDm2,557 netDm2,257 netDm2,424 netDm2,534 blat blastDm2FB,66 blastDm2FB,191 blastHg17KG,55 blastHg17KG,182 est,657 est,666 est,803 intronEst,693 intronEst,702 intronEst,810 mrna,398 mrna,520 xenoMrna,16 xenoMrna,431 xenoMrna,521 xenoRefGene,228 blat--the xenoRefGene,305 blocks chainDm2,370 chainDm2,380 gold,222 gold,235 gold,245 blog ensGene,131 blue unipAliSwissprot,11 unipAliSwissprot,15 uniprot,507 uniprot,583 bond uniprot,473 bonds unipDisulfBond,2 unipDisulfBond,5 uniprot,334 uniprot,336 both chainDm2,46 chainDm2,68 chainDm2,137 netDm2,388 uniprot,675 uniprot,1616 xenoRefGene,126 xenoRefGene,197 boundaries blastDm2FB,71 blastHg17KG,60 gold,196 box chainDm2,287 est,208 est,219 est,259 gap,71 intronEst,283 intronEst,294 intronEst,334 mrna,154 mrna,165 mrna,205 netDm2,142 xenoMrna,228 xenoMrna,239 xenoMrna,279 xenoRefGene,216 boxes chainDm2,88 chainDm2,98 est,179 gap,36 intronEst,254 mrna,125 netDm2,131 xenoMrna,199 branch-point augustusGene,55 brian blastDm2FB,211 blastHg17KG,202 uniprot,1959 bridge gold,243 bridged gap,60 briefly uniprot,778 brown gold,206 gold,221 xenoRefGene,322 browser chainDm2,463 ensGene,67 est,226 est,350 est,367 intronEst,301 intronEst,414 intronEst,431 mrna,172 mrna,296 mrna,313 netDm2,458 uniprot,1544 uniprot,1721 xenoMrna,246 xenoMrna,359 xenoMrna,376 browsing uniprot,1662 build uniprot,1552 built augustusGene,51 augustusGene,67 geneid,91 burge genscan,22 genscan,146 genscan,166 genscan,173 genscan,180 genscan,207 but blastDm2FB,108 blastHg17KG,97 est,486 est,543 est,596 intronEst,522 intronEst,579 intronEst,632 netDm2,233 rmsk,270 uniprot,638 uniprot,1047 button chainDm2,258 by augustusGene,147 augustusGene,266 augustusGene,282 blastDm2FB,194 blastDm2FB,207 blastHg17KG,7 blastHg17KG,185 blastHg17KG,198 brhInparalog,18 chainDm2,61 chainDm2,91 chainDm2,228 chainDm2,291 chainDm2,383 chainDm2,412 chainDm2,431 chainDm2,451 chainDm2,473 ensGene,15 est,268 est,496 est,665 est,743 gc5Base,81 geneid,21 genscan,20 genscan,88 genscan,121 gold,22 gold,199 intronEst,87 intronEst,532 intronEst,701 intronEst,782 microsat,110 mrna,214 mrna,460 netDm2,101 netDm2,119 netDm2,305 netDm2,421 netDm2,431 netDm2,450 netDm2,468 rmsk,4 rmsk,14 rmsk,50 scaffolds,25 simpleRepeat,6 simpleRepeat,22 simpleRepeat,70 uniprot,39 uniprot,49 uniprot,224 uniprot,713 uniprot,720 uniprot,818 uniprot,987 uniprot,995 uniprot,1015 uniprot,1028 uniprot,1045 uniprot,1538 uniprot,1764 uniprot,1943 xenoMrna,493 xenoRefGene,102 xenoRefGene,107 xenoRefGene,171 xenoRefGene,189 xenoRefGene,195 xenoRefGene,292 xenoRefGene,297 c gc5Base,23 genscan,181 genscan,208 caenorhabditis augustusGene,212 california chainDm2,447 netDm2,418 cameron ensGene,174 can augustusGene,98 chainDm2,41 chainDm2,58 ensGene,60 ensGene,103 ensGene,137 est,121 est,252 intronEst,196 intronEst,327 mrna,67 mrna,198 simpleRepeat,35 uniprot,180 uniprot,656 uniprot,1064 uniprot,1093 uniprot,1104 uniprot,1326 uniprot,1555 uniprot,1693 uniprot,1714 uniprot,1739 uniprot,1749 uniprot,1758 uniprot,1769 uniprot,1792 uniprot,1798 uniprot,1881 xenoMrna,141 xenoMrna,272 xenoRefGene,87 candidate brhInparalog,79 cannot uniprot,1269 canonical intronEst,70 cap-selected est,559 intronEst,595 cap-selection est,568 intronEst,604 cases chainDm2,159 netDm2,88 uniprot,757 uniprot,1183 uniprot,1452 cat uniprot,1936 catalunya geneid,47 categorized netDm2,189 cauldron chainDm2,510 netDm2,487 cause netDm2,171 caused chainDm2,60 cavanaugh est,749 mrna,466 cdna augustusGene,299 est,461 est,464 intronEst,497 intronEst,500 cell uniprot,563 cells est,456 intronEst,492 center gold,27 gold,270 scaffolds,30 scaffolds,185 centre geneid,37 cerevisiae augustusGene,222 certain rmsk,260 chain chainDm2,3 chainDm2,85 netDm2,25 netDm2,94 netDm2,149 netDm2,265 netDm2,308 netDm2,319 netDm2,327 netDm2,332 netDm2,355 netDm2,364 uniprot,290 chained blastDm2FB,100 blastHg17KG,8 blastHg17KG,89 chainDm2,11 chainnet netDm2,282 netDm2,407 chains blastDm2FB,116 blastDm2FB,129 blastHg17KG,105 blastHg17KG,118 chainDm2,164 chainDm2,174 chainDm2,185 chainDm2,231 chainDm2,270 chainDm2,377 chainDm2,391 chainDm2,400 chainDm2,470 netDm2,76 netDm2,81 netDm2,103 netDm2,115 netDm2,122 netDm2,179 netDm2,253 netDm2,274 netDm2,289 netDm2,349 netDm2,380 unipChain,1 unipChain,7 uniprot,288 change est,125 intronEst,200 mrna,71 xenoMrna,145 changed uniprot,1382 chapter geneid,172 characteristic est,330 intronEst,394 mrna,276 xenoMrna,339 check chainDm2,253 checkbox uniprot,231 chen ensGene,176 chiaromonte chainDm2,480 chicken augustusGene,204 augustusGene,262 chmod uniprot,1921 choose augustusGene,171 est,286 est,325 intronEst,350 intronEst,389 mrna,232 mrna,271 uniprot,657 xenoMrna,295 xenoMrna,334 chosen est,348 intronEst,412 mrna,294 xenoMrna,357 chr4 chainDm2,285 chr6 uniprot,1820 chris genscan,21 genscan,172 uniprot,1954 chrom uniprot,1819 chromosome chainDm2,211 chainDm2,240 chainDm2,265 chainDm2,273 chainDm2,283 chainDm2,292 chainDm2,356 netDm2,212 netDm2,227 netDm2,243 uniprot,1416 chromosome-based chainDm2,233 circle rmsk,172 clark ensGene,178 est,751 mrna,468 class rmsk,169 classes rmsk,121 clawson gc5Base,83 cleaved uniprot,249 click gc5Base,56 intronEst,481 netDm2,139 netDm2,153 uniprot,229 uniprot,481 uniprot,1673 xenoMrna,417 xenoRefGene,110 xenoRefGene,214 clicking uniprot,1633 clonable gold,75 scaffolds,78 clone gap,92 gap,105 cloned est,466 intronEst,502 clones gap,108 closed gap,26 closest augustusGene,241 clustered gold,85 scaffolds,88 cm xenoRefGene,333 code uniprot,1546 uniprot,1775 uniprot,1789 coding geneid,118 simpleRepeat,38 uniprot,1102 uniprot,1133 xenoRefGene,212 codon genscan,100 genscan,122 mrna,332 mrna,357 xenoMrna,395 xenoRefGene,138 xenoRefGene,145 xenoRefGene,160 xenoRefGene,190 codons geneid,75 genscan,89 genscan,93 xenoRefGene,165 xenoRefGene,172 coiled-coil uniprot,367 collection xenoRefGene,33 color chainDm2,261 est,131 est,327 genscan,86 genscan,96 intronEst,206 intronEst,391 mrna,77 mrna,273 rmsk,177 xenoMrna,151 xenoMrna,336 xenoRefGene,58 xenoRefGene,169 coloration gold,207 colored chainDm2,236 est,434 mrna,373 uniprot,160 uniprot,176 coloring chainDm2,252 est,421 genscan,116 mrna,333 mrna,360 xenoMrna,396 xenoRefGene,139 xenoRefGene,146 xenoRefGene,184 colors xenoRefGene,81 xenoRefGene,161 combination est,289 gold,38 intronEst,353 mrna,235 scaffolds,41 xenoMrna,298 combinations xenoMrna,120 combined rmsk,202 command uniprot,1871 uniprot,1875 commands uniprot,1902 comment uniprot,260 uniprot,282 uniprot,531 uniprot,615 comparative chainDm2,13 netDm2,13 compare mrna,342 xenoMrna,405 xenoRefGene,155 comparison brhInparalog,41 genscan,109 uniprot,1260 comparisons brhInparalog,90 compiled uniprot,1771 complete genscan,213 completely uniprot,1464 xenoRefGene,137 complex chainDm2,130 complexity rmsk,30 rmsk,153 components gold,247 composed uniprot,1396 compositional genscan,41 uniprot,399 computational geneid,26 geneid,145 genscan,196 uniprot,51 conditional augustusGene,118 confidence brhInparalog,75 configuration chainDm2,227 est,49 gc5Base,60 gc5Base,69 genscan,64 genscan,84 intronEst,127 mrna,30 netDm2,67 rmsk,109 uniprot,235 uniprot,449 uniprot,650 uniprot,1755 xenoMrna,34 xenoRefGene,46 configured est,383 gc5Base,42 intronEst,447 mrna,329 xenoMrna,392 xenoRefGene,89 conflicts unipConflict,2 unipConflict,5 uniprot,373 connect uniprot,1677 considerable est,640 intronEst,676 considered intronEst,59 consistency uniprot,402 consists gold,80 scaffolds,83 consortium uniprot,1986 consult est,220 intronEst,295 mrna,166 xenoMrna,240 contact uniprot,686 uniprot,1440 contain gold,92 gold,99 scaffolds,95 scaffolds,102 uniprot,1163 contained gold,117 netDm2,381 scaffolds,120 contains blastDm2FB,19 blastHg17KG,17 est,245 gap,77 intronEst,320 mrna,191 xenoMrna,265 xenoRefGene,142 contamination est,628 intronEst,93 intronEst,664 content augustusGene,71 gc5Base,31 context gap,95 contig gap,97 gap,113 gold,143 gold,195 gold,261 scaffolds,146 contigs gap,48 gap,88 gold,97 gold,102 gold,108 gold,125 gold,184 gold,231 scaffolds,100 scaffolds,105 scaffolds,111 scaffolds,128 controls xenoRefGene,92 convenience uniprot,404 conventions chainDm2,225 est,47 est,55 genscan,62 genscan,70 intronEst,125 intronEst,133 mrna,28 mrna,36 netDm2,65 rmsk,107 uniprot,447 xenoMrna,32 xenoMrna,40 xenoRefGene,44 xenoRefGene,52 converted chainDm2,330 uniprot,1477 uniprot,1760 coordinates uniprot,29 uniprot,643 uniprot,1848 uniprot,1855 uniprot,1886 uniprot,1892 copies microsat,80 copy uniprot,419 correct uniprot,962 uniprot,1222 corresponds est,228 intronEst,303 mrna,174 xenoMrna,248 could gold,104 gold,110 scaffolds,107 scaffolds,113 cover est,561 intronEst,597 coverage gold,72 scaffolds,75 uniprot,1485 covered netDm2,304 cox ensGene,180 create gold,191 created gold,35 microsat,89 rmsk,13 scaffolds,38 uniprot,824 uniprot,1942 credits augustusGene,247 blastDm2FB,151 blastHg17KG,140 brhInparalog,91 chainDm2,404 ensGene,145 est,725 gc5Base,71 geneid,142 genscan,169 gold,262 intronEst,764 microsat,104 modelRefGene,60 mrna,441 netDm2,405 rmsk,284 scaffolds,177 simpleRepeat,66 uniprot,1938 xenoMrna,474 xenoRefGene,280 crg geneid,44 criteria est,303 est,321 est,359 est,377 intronEst,367 intronEst,385 intronEst,423 intronEst,441 mrna,249 mrna,267 mrna,305 mrna,323 xenoMrna,312 xenoMrna,330 xenoMrna,368 xenoMrna,386 cruz chainDm2,450 netDm2,420 cuff ensGene,182 culex augustusGene,220 curated uniprot,35 uniprot,110 uniprot,142 xenoRefGene,296 xenoRefGene,373 curr geneid,167 current est,163 intronEst,238 mrna,109 rmsk,216 uniprot,1296 uniprot,1575 uniprot,1692 uniprot,1712 xenoMrna,183 curwen ensGene,184 cytoplamsic uniprot,518 cytoplasmic unipLocCytopl,1 unipLocCytopl,3 uniprot,276 uniprot,284 uniprot,569 cytosine gc5Base,24 d augustusGene,293 blastDm2FB,1 blastDm2FB,4 blastDm2FB,34 blastDm2FB,53 blastDm2FB,61 chainDm2,1 chainDm2,4 chainDm2,19 chainDm2,47 chainDm2,71 chainDm2,115 chainDm2,301 chainDm2,349 chainDm2,507 chainDm2,551 ensGene,171 genscan,192 netDm2,1 netDm2,4 netDm2,21 netDm2,47 netDm2,484 netDm2,528 d23-6 est,796 intronEst,807 mrna,513 xenoMrna,518 d36-42 est,770 mrna,487 d501-4 xenoRefGene,391 d71-5 uniprot,2005 d756-63 xenoRefGene,357 da est,748 est,776 intronEst,787 mrna,465 mrna,493 xenoMrna,498 dark unipAliSwissprot,10 uniprot,162 uniprot,582 uniprot,587 xenoRefGene,75 darker intronEst,142 darkly est,69 mrna,50 xenoMrna,54 data ensGene,55 ensGene,59 ensGene,70 ensGene,102 est,735 gc5Base,73 geneid,153 gold,279 intronEst,774 microsat,47 mrna,452 rmsk,229 rmsk,246 scaffolds,194 uniprot,32 uniprot,45 uniprot,892 uniprot,895 uniprot,1683 uniprot,1705 uniprot,1709 uniprot,1724 uniprot,1837 uniprot,1980 xenoMrna,485 xenoRefGene,36 xenoRefGene,290 database chainDm2,466 ensGene,193 est,768 est,794 intronEst,805 mrna,485 mrna,511 netDm2,461 rmsk,309 uniprot,25 uniprot,821 uniprot,2003 uniprot,2031 xenoMrna,516 xenoRefGene,355 xenoRefGene,376 xenoRefGene,389 databases est,615 est,742 intronEst,97 intronEst,651 intronEst,781 mrna,459 xenoMrna,492 david chainDm2,460 de augustusGene,303 geneid,38 default chainDm2,229 uniprot,225 xenoRefGene,103 xenoRefGene,196 defined uniprot,305 uniprot,1387 defining geneid,106 degraded est,530 intronEst,566 degree est,625 intronEst,661 deletion chainDm2,112 chainDm2,512 est,443 mrna,382 netDm2,489 rmsk,190 deletions chainDm2,66 chainDm2,145 dense est,61 gold,175 intronEst,139 mrna,42 xenoMrna,46 dependencies genscan,183 depending uniprot,442 uniprot,808 depicts gap,10 gold,179 deposited est,602 intronEst,638 deprecated uniprot,1044 derived netDm2,255 uniprot,830 described genscan,161 netDm2,262 rmsk,96 uniprot,1524 describes augustusGene,226 description augustusGene,12 blastDm2FB,16 blastHg17KG,14 brhInparalog,11 chainDm2,15 ensGene,9 ensGene,32 est,12 est,112 gap,7 gc5Base,11 geneid,10 genscan,10 genscan,77 genscan,133 gold,8 intronEst,13 intronEst,187 microsat,10 modelRefGene,10 modelRefGene,31 mrna,12 mrna,58 netDm2,15 netDm2,267 rmsk,9 scaffolds,7 simpleRepeat,11 uniprot,11 uniprot,106 xenoMrna,11 xenoMrna,132 xenoRefGene,11 xenoRefGene,99 descriptions augustusGene,91 designed geneid,61 uniprot,1355 desired est,288 intronEst,352 mrna,234 xenoMrna,297 destined uniprot,244 detail genscan,164 detailed augustusGene,90 netDm2,145 netDm2,164 rmsk,37 uniprot,692 details gold,165 scaffolds,168 uniprot,499 uniprot,771 uniprot,1157 uniprot,1584 determining netDm2,169 developed chainDm2,407 chainDm2,442 geneid,20 netDm2,413 netDm2,426 di-nucleotide microsat,3 microsat,32 diekhans augustusGene,288 uniprot,1540 uniprot,1957 diemand uniprot,2014 differ est,406 intronEst,470 uniprot,746 uniprot,1131 difference uniprot,1251 differences uniprot,374 uniprot,921 uniprot,1370 different augustusGene,39 augustusGene,85 augustusGene,96 augustusGene,144 augustusGene,155 augustusGene,179 augustusGene,193 brhInparalog,82 ensGene,22 gc5Base,50 genscan,54 netDm2,244 rmsk,120 uniprot,634 xenoMrna,113 direction est,81 est,99 intronEst,156 intronEst,174 directly ensGene,111 uniprot,993 directory ensGene,86 ensGene,94 discarded chainDm2,397 xenoRefGene,238 discover blastDm2FB,69 blastHg17KG,58 disease uniprot,545 uniprot,616 diseases simpleRepeat,54 display chainDm2,203 chainDm2,224 chainDm2,267 chainDm2,464 est,46 est,54 est,62 est,127 est,154 est,184 est,329 est,353 est,369 est,385 est,395 est,444 genscan,61 genscan,69 genscan,104 intronEst,112 intronEst,124 intronEst,132 intronEst,140 intronEst,202 intronEst,229 intronEst,259 intronEst,393 intronEst,417 intronEst,433 intronEst,449 intronEst,459 mrna,27 mrna,35 mrna,43 mrna,73 mrna,100 mrna,130 mrna,275 mrna,299 mrna,315 mrna,331 mrna,383 netDm2,64 netDm2,70 netDm2,129 netDm2,158 netDm2,187 netDm2,459 rmsk,106 rmsk,112 rmsk,182 uniprot,446 xenoMrna,31 xenoMrna,39 xenoMrna,47 xenoMrna,147 xenoMrna,174 xenoMrna,204 xenoMrna,338 xenoMrna,362 xenoMrna,378 xenoMrna,394 xenoRefGene,43 xenoRefGene,51 xenoRefGene,80 xenoRefGene,116 xenoRefGene,159 displayed chainDm2,402 gc5Base,54 intronEst,760 netDm2,106 netDm2,203 xenoRefGene,204 displays chainDm2,87 microsat,13 rmsk,116 simpleRepeat,14 xenoMrna,14 dissertation augustusGene,105 distant est,585 intronEst,621 distinguished gold,198 distributions augustusGene,83 genscan,42 disulf unipDisulfBond,1 uniprot,472 disulfide unipDisulfBond,4 uniprot,333 uniprot,335 diverged netDm2,404 divided uniprot,56 dj blastDm2FB,176 blastHg17KG,165 est,756 est,780 intronEst,791 mrna,473 mrna,497 xenoMrna,502 dl est,784 intronEst,795 mrna,501 xenoMrna,506 dm2 blastDm2FB,10 chainDm2,10 chainDm2,81 chainDm2,82 netDm2,10 netDm2,61 netDm2,62 dna geneid,119 genscan,219 microsat,123 modelRefGene,51 rmsk,23 rmsk,31 rmsk,145 rmsk,148 simpleRepeat,83 xenoMrna,110 do uniprot,168 uniprot,1129 domain unipLocExtra,4 domains unipDomain,1 unipDomain,3 unipLocCytopl,4 unipLocTransMemb,4 uniprot,255 uniprot,257 uniprot,266 uniprot,268 uniprot,277 uniprot,279 uniprot,323 uniprot,325 uniprot,331 uniprot,391 uniprot,514 uniprot,516 uniprot,519 uniprot,550 done augustusGene,265 augustusGene,281 donor genscan,31 double chainDm2,95 chainDm2,126 double-lined chainDm2,187 double-sided chainDm2,55 down ensGene,186 download ensGene,93 ensGene,143 uniprot,1744 uniprot,1983 downloaded uniprot,1741 uniprot,1777 downloading uniprot,1787 downloads ensGene,74 ensGene,85 rmsk,76 uniprot,1698 dr xenoRefGene,367 draft gap,91 gold,14 scaffolds,17 drastically intronEst,99 drawn gap,67 gold,241 draws uniprot,1532 drosophila augustusGene,213 geneid,187 due chainDm2,109 chainDm2,180 chainDm2,192 uniprot,848 uniprot,919 uniprot,1368 duplicate uniprot,594 duplication chainDm2,511 netDm2,488 during gap,27 netDm2,309 dynamic chainDm2,386 e ensGene,173 geneid,156 geneid,181 uniprot,2021 e.g chainDm2,284 uniprot,398 uniprot,467 each blastDm2FB,80 blastHg17KG,69 brhInparalog,55 chainDm2,221 est,217 genscan,99 intronEst,292 mrna,163 uniprot,151 xenoMrna,237 echo uniprot,1925 edge uniprot,1182 uniprot,1451 editors genscan,195 effect est,600 intronEst,636 either chainDm2,92 gap,50 uniprot,816 uniprot,1398 electronic rmsk,312 element rmsk,198 elements rmsk,3 rmsk,127 rmsk,135 rmsk,140 rmsk,147 rmsk,316 eliminate est,673 intronEst,709 eliminating intronEst,105 elsevier genscan,202 embl brhInparalog,2 brhInparalog,6 brhInparalog,22 brhInparalog,97 emerged est,570 intronEst,606 netDm2,315 end est,520 est,538 est,548 est,589 intronEst,556 intronEst,574 intronEst,584 intronEst,625 uniprot,126 uniprot,210 uniprot,1823 ends intronEst,86 engine gold,55 scaffolds,58 ensembl ensGene,1 ensGene,3 ensGene,16 ensGene,38 ensGene,57 ensGene,151 ensGene,162 ensGene,191 uniprot,731 uniprot,834 uniprot,865 ensgene.txt.gz ensGene,88 enter chainDm2,278 entered est,254 est,264 intronEst,329 mrna,200 mrna,210 xenoMrna,274 entirely uniprot,1434 ermolaeva xenoRefGene,330 especially est,155 intronEst,230 mrna,101 xenoMrna,175 est est,11 est,87 est,183 est,451 est,614 est,635 est,687 est,733 intronEst,12 intronEst,62 intronEst,96 intronEst,122 intronEst,162 intronEst,258 intronEst,487 intronEst,650 intronEst,671 intronEst,723 intronEst,772 mrna,11 xenoMrna,10 ests est,3 est,6 est,23 est,29 est,193 est,298 est,313 est,354 est,372 est,490 est,535 est,546 est,648 est,675 intronEst,2 intronEst,5 intronEst,24 intronEst,40 intronEst,109 intronEst,115 intronEst,150 intronEst,268 intronEst,362 intronEst,377 intronEst,418 intronEst,436 intronEst,526 intronEst,571 intronEst,582 intronEst,684 intronEst,711 et ensGene,45 ensGene,188 xenoRefGene,340 etc uniprot,479 evaluate uniprot,1461 even est,609 est,616 intronEst,645 intronEst,652 uniprot,136 every netDm2,27 uniprot,1571 evgeny brhInparalog,19 brhInparalog,94 evidence intronEst,65 evolution chainDm2,508 netDm2,485 ew blastDm2FB,174 blastHg17KG,163 est,760 mrna,477 exact uniprot,1622 uniprot,1747 example est,186 est,239 intronEst,261 intronEst,314 mrna,132 mrna,185 uniprot,1450 uniprot,1811 uniprot,1901 xenoMrna,206 xenoMrna,259 except uniprot,508 exception gap,19 exclude est,134 est,339 est,345 intronEst,209 intronEst,403 intronEst,409 mrna,80 mrna,285 mrna,291 xenoMrna,154 xenoMrna,348 xenoMrna,354 exe uniprot,1918 exist gold,210 netDm2,90 exon augustusGene,86 blastDm2FB,70 blastDm2FB,81 blastDm2FB,115 blastDm2FB,128 blastHg17KG,59 blastHg17KG,70 blastHg17KG,104 blastHg17KG,117 exons blastDm2FB,98 blastHg17KG,87 geneid,89 geneid,95 geneid,126 geneid,141 genscan,44 expansions simpleRepeat,48 expense intronEst,103 experimentally uniprot,304 explanation gc5Base,66 explored ensGene,62 uniprot,1716 expressed est,20 est,194 intronEst,21 intronEst,269 mrna,140 xenoMrna,214 extend rmsk,267 extended blastDm2FB,131 blastHg17KG,120 extending blastDm2FB,117 blastHg17KG,106 extracellular unipLocExtra,1 unipLocExtra,3 uniprot,254 uniprot,262 uniprot,513 uniprot,566 f chainDm2,481 xenoRefGene,327 facilitate genscan,106 uniprot,1852 factor est,231 intronEst,306 mrna,177 xenoMrna,251 famiglietti uniprot,2018 families uniprot,1395 faq augustusGene,45 ensGene,28 genscan,60 rmsk,280 uniprot,1839 far uniprot,599 farrell xenoRefGene,332 feature chainDm2,207 est,389 genscan,129 intronEst,453 mrna,335 uniprot,64 uniprot,524 uniprot,613 xenoMrna,398 xenoRefGene,147 xenoRefGene,180 features uniprot,694 uniprot,1805 xenoRefGene,83 fed chainDm2,338 feedback uniprot,1445 uniprot,1961 fgensh brhInparalog,73 field augustusGene,120 file uniprot,884 uniprot,1511 uniprot,1614 uniprot,1737 uniprot,1756 filenames uniprot,1748 uniprot,1894 files ensGene,78 uniprot,1863 fill netDm2,339 netDm2,372 filled netDm2,99 netDm2,118 netDm2,321 netDm2,394 filter chainDm2,290 est,119 est,168 est,181 est,190 est,237 est,278 est,302 est,320 est,358 est,376 genscan,82 intronEst,194 intronEst,243 intronEst,256 intronEst,265 intronEst,312 intronEst,342 intronEst,366 intronEst,384 intronEst,422 intronEst,440 mrna,65 mrna,114 mrna,127 mrna,136 mrna,183 mrna,224 mrna,248 mrna,266 mrna,304 mrna,322 uniprot,187 uniprot,664 xenoMrna,139 xenoMrna,188 xenoMrna,201 xenoMrna,210 xenoMrna,257 xenoMrna,287 xenoMrna,311 xenoMrna,329 xenoMrna,367 xenoMrna,385 filtered est,341 intronEst,405 mrna,287 uniprot,1480 uniprot,1499 xenoMrna,350 filtering est,280 intronEst,344 mrna,226 uniprot,693 uniprot,912 uniprot,1154 xenoMrna,289 final uniprot,1153 finally blastDm2FB,93 blastHg17KG,82 geneid,120 finder microsat,94 microsat,107 microsat,118 simpleRepeat,25 simpleRepeat,78 finding augustusGene,306 netDm2,38 finger uniprot,327 finishing gap,29 first blastDm2FB,48 blastHg17KG,37 geneid,68 netDm2,279 uniprot,70 xenoMrna,72 fish augustusGene,201 fit netDm2,299 fix uniprot,851 flag rmsk,253 flags rmsk,255 fly augustusGene,214 flybase blastDm2FB,36 blastDm2FB,55 following gap,79 genscan,81 follows est,52 genscan,67 intronEst,130 mrna,33 xenoMrna,37 xenoRefGene,49 for augustusGene,34 augustusGene,52 augustusGene,68 augustusGene,80 augustusGene,175 augustusGene,184 augustusGene,192 augustusGene,232 augustusGene,253 augustusGene,260 augustusGene,274 blastDm2FB,161 blastHg17KG,150 brhInparalog,54 brhInparalog,68 brhInparalog,98 chainDm2,220 ensGene,17 ensGene,30 ensGene,72 ensGene,79 ensGene,98 ensGene,152 ensGene,157 est,56 est,114 est,185 est,216 est,238 est,411 est,422 est,435 est,483 gc5Base,64 geneid,117 geneid,150 genscan,49 genscan,71 genscan,124 genscan,131 genscan,174 gold,163 gold,276 intronEst,110 intronEst,134 intronEst,189 intronEst,260 intronEst,291 intronEst,313 intronEst,475 intronEst,519 microsat,95 modelRefGene,29 modelRefGene,57 modelRefGene,64 mrna,37 mrna,60 mrna,131 mrna,162 mrna,184 mrna,348 mrna,361 mrna,374 netDm2,26 netDm2,37 netDm2,42 netDm2,176 rmsk,25 rmsk,259 rmsk,281 rmsk,291 scaffolds,166 scaffolds,191 simpleRepeat,30 simpleRepeat,56 uniprot,75 uniprot,78 uniprot,401 uniprot,405 uniprot,462 uniprot,497 uniprot,532 uniprot,549 uniprot,697 uniprot,739 uniprot,743 uniprot,770 uniprot,842 uniprot,846 uniprot,861 uniprot,886 uniprot,964 uniprot,997 uniprot,1017 uniprot,1023 uniprot,1057 uniprot,1070 uniprot,1097 uniprot,1119 uniprot,1211 uniprot,1238 uniprot,1320 uniprot,1393 uniprot,1427 uniprot,1627 uniprot,1644 uniprot,1651 uniprot,1661 uniprot,1726 uniprot,1782 uniprot,1786 uniprot,1810 uniprot,1833 uniprot,1840 uniprot,1869 uniprot,1977 uniprot,1982 uniprot,2034 xenoMrna,41 xenoMrna,64 xenoMrna,134 xenoMrna,205 xenoMrna,236 xenoMrna,258 xenoMrna,411 xenoRefGene,20 xenoRefGene,53 xenoRefGene,175 form uniprot,1665 format chainDm2,333 ensGene,77 ensGene,97 formats uniprot,885 uniprot,1865 forth netDm2,125 found augustusGene,100 chainDm2,382 ensGene,139 mrna,416 uniprot,241 uniprot,1128 uniprot,1271 uniprot,1328 uniprot,1557 uniprot,1751 uniprot,1794 xenoMrna,448 four netDm2,193 xenoMrna,119 fragment gap,84 gold,253 fragments est,42 gold,4 intronEst,53 free uniprot,1435 from augustusGene,19 blastDm2FB,25 blastDm2FB,51 blastHg17KG,23 blastHg17KG,41 brhInparalog,39 chainDm2,75 chainDm2,142 chainDm2,424 chainDm2,456 ensGene,106 ensGene,112 est,407 est,455 est,476 est,586 est,604 est,649 est,732 geneid,16 geneid,92 geneid,121 genscan,15 gold,3 gold,36 intronEst,471 intronEst,491 intronEst,512 intronEst,622 intronEst,640 intronEst,685 intronEst,771 modelRefGene,19 mrna,7 mrna,449 netDm2,55 netDm2,245 netDm2,256 netDm2,443 rmsk,86 scaffolds,39 uniprot,21 uniprot,36 uniprot,115 uniprot,198 uniprot,250 uniprot,557 uniprot,747 uniprot,831 uniprot,890 uniprot,915 uniprot,1507 uniprot,1696 uniprot,1742 uniprot,1772 uniprot,1844 uniprot,1953 uniprot,1962 xenoMrna,6 xenoMrna,25 xenoMrna,482 xenoRefGene,27 xenoRefGene,167 xenoRefGene,287 full chainDm2,202 netDm2,69 rmsk,111 uniprot,486 uniprot,528 uniprot,540 furthermore augustusGene,64 g ensGene,175 gc5Base,20 geneid,158 geneid,179 microsat,115 simpleRepeat,75 gambiae augustusGene,219 gap blastDm2FB,106 blastDm2FB,110 blastHg17KG,95 blastHg17KG,99 chainDm2,27 chainDm2,37 chainDm2,154 est,430 gap,1 gap,2 gap,54 gap,61 gap,74 mrna,369 netDm2,162 netDm2,174 netDm2,197 netDm2,215 netDm2,230 netDm2,247 netDm2,323 gapless chainDm2,368 gaps chainDm2,33 chainDm2,44 chainDm2,57 chainDm2,105 chainDm2,131 chainDm2,177 chainDm2,188 gap,11 gap,16 gap,23 gap,31 gap,83 gap,85 gap,106 gold,162 gold,209 netDm2,89 netDm2,111 netDm2,138 netDm2,378 netDm2,384 scaffolds,165 gary microsat,111 simpleRepeat,71 gasteiger uniprot,2020 gattiker uniprot,2016 gb gold,66 scaffolds,69 gbdb uniprot,1815 gc gc5Base,1 gc5Base,3 gc5Base,13 gc5Base,30 gen geneid,41 genbank est,25 est,650 est,761 est,785 intronEst,26 intronEst,686 intronEst,796 mrna,8 mrna,23 mrna,387 mrna,478 mrna,502 uniprot,376 xenoMrna,7 xenoMrna,24 xenoMrna,507 gencode uniprot,730 gene augustusGene,5 augustusGene,10 augustusGene,40 augustusGene,112 augustusGene,157 augustusGene,163 augustusGene,305 augustusGene,320 blastDm2FB,14 blastHg17KG,12 brhInparalog,4 brhInparalog,9 brhInparalog,15 brhInparalog,36 ensGene,7 ensGene,11 ensGene,23 ensGene,39 ensGene,58 ensGene,155 geneid,4 geneid,8 geneid,14 geneid,128 genscan,4 genscan,8 genscan,55 genscan,72 genscan,111 genscan,117 genscan,214 modelRefGene,4 modelRefGene,8 modelRefGene,13 modelRefGene,35 modelRefGene,41 modelRefGene,47 modelRefGene,55 unipAliSwissprot,20 unipAliTrembl,12 unipChain,10 unipConflict,8 unipDisulfBond,8 unipDomain,6 unipInterest,8 unipLocCytopl,7 unipLocExtra,7 unipLocSignal,8 unipLocTransMemb,7 unipModif,9 unipMut,8 unipOther,8 unipRepeat,6 unipStruct,10 uniprot,9 uniprot,732 uniprot,1025 uniprot,1050 uniprot,1059 uniprot,1080 uniprot,1281 uniprot,1394 xenoRefGene,9 xenoRefGene,54 xenoRefGene,108 xenoRefGene,123 xenoRefGene,128 xenoRefGene,156 xenoRefGene,185 gene-model brhInparalog,70 gene-rich gc5Base,36 genedx uniprot,1973 geneid geneid,1 geneid,3 geneid,18 geneid,50 geneid,163 geneid,185 genepred ensGene,76 general est,532 intronEst,568 generally rmsk,72 uniprot,248 generate est,643 intronEst,679 rmsk,227 rmsk,300 generated chainDm2,472 ensGene,14 rmsk,248 xenoRefGene,291 generating augustusGene,189 genes augustusGene,8 augustusGene,44 blastDm2FB,12 blastDm2FB,30 blastHg17KG,10 blastHg17KG,28 blastHg17KG,34 blastHg17KG,45 brhInparalog,7 ensGene,2 ensGene,4 ensGene,5 ensGene,27 ensGene,92 est,45 geneid,2 geneid,6 geneid,56 geneid,166 genscan,2 genscan,6 genscan,59 intronEst,56 modelRefGene,2 modelRefGene,6 simpleRepeat,41 unipAliSwissprot,18 unipAliTrembl,10 unipChain,8 unipConflict,6 unipDisulfBond,6 unipDomain,4 unipInterest,6 unipLocCytopl,5 unipLocExtra,5 unipLocSignal,6 unipLocTransMemb,5 unipModif,7 unipMut,6 unipOther,6 unipRepeat,4 unipStruct,8 uniprot,7 uniprot,1300 xenoRefGene,6 xenoRefGene,7 xenoRefGene,19 xenoRefGene,194 xenoRefGene,202 xenoRefGene,213 genet rmsk,318 genetic rmsk,88 genome augustusGene,31 blastDm2FB,63 blastHg17KG,52 chainDm2,173 chainDm2,558 ensGene,164 ensGene,192 est,28 est,655 est,808 geneid,188 gold,20 gold,25 gold,41 gold,77 gold,259 gold,268 intronEst,29 intronEst,39 intronEst,691 intronEst,815 modelRefGene,22 mrna,26 mrna,395 mrna,525 netDm2,33 netDm2,44 netDm2,277 netDm2,535 scaffolds,23 scaffolds,28 scaffolds,44 scaffolds,80 scaffolds,183 unipAliSwissprot,9 unipAliTrembl,9 uniprot,88 uniprot,103 uniprot,120 uniprot,203 uniprot,216 uniprot,609 uniprot,642 uniprot,717 uniprot,749 uniprot,803 uniprot,811 uniprot,910 uniprot,1141 uniprot,1377 uniprot,1494 uniprot,1520 uniprot,1543 uniprot,1730 uniprot,1847 uniprot,1858 uniprot,1891 xenoMrna,428 xenoMrna,526 xenoRefGene,226 xenoRefGene,309 genome.bed uniprot,1935 uniprot,1937 genomes chainDm2,312 chainDm2,520 modelRefGene,59 netDm2,497 uniprot,863 uniprot,941 xenoRefGene,378 genomic brhInparalog,32 brhInparalog,46 brhInparalog,56 brhInparalog,64 chainDm2,23 chainDm2,488 est,91 est,409 est,610 est,721 geneid,59 genscan,92 genscan,218 intronEst,166 intronEst,473 intronEst,646 intronEst,757 modelRefGene,50 mrna,346 mrna,437 netDm2,181 uniprot,28 uniprot,450 xenoMrna,102 xenoMrna,409 xenoMrna,470 xenoRefGene,164 xenoRefGene,276 genomics chainDm2,14 netDm2,14 genscan genscan,1 genscan,3 genscan,17 genscan,136 genscan,177 genuine intronEst,107 giri rmsk,92 rmsk,290 gish blastDm2FB,169 blastHg17KG,158 github uniprot,1559 give xenoMrna,112 given uniprot,741 uniprot,1235 uniprot,1240 uniprot,1808 glyco uniprot,469 glycosylation uniprot,341 uniprot,584 gnomon modelRefGene,44 go est,417 est,438 genscan,113 mrna,354 mrna,377 uniprot,1412 xenoRefGene,181 gold gold,204 gold,219 golden gold,187 goldenpath uniprot,1907 gr xenoRefGene,323 graph gc5Base,59 gc5Base,78 graphical netDm2,128 rmsk,181 green uniprot,588 uniprot,593 group augustusGene,198 augustusGene,235 chainDm2,359 geneid,31 uniprot,430 groups augustusGene,194 gold,89 gold,115 scaffolds,92 scaffolds,118 groupun gold,119 scaffolds,122 gt intronEst,84 uniprot,907 uniprot,909 uniprot,1930 gtf ensGene,96 guanine gc5Base,21 guig geneid,23 geneid,159 geneid,182 h uniprot,2013 haeussler uniprot,1945 handful uniprot,1180 haplotype uniprot,852 hardison chainDm2,426 chainDm2,548 netDm2,445 netDm2,525 hart xenoRefGene,334 has est,117 intronEst,83 intronEst,192 mrna,63 rmsk,212 uniprot,33 uniprot,46 uniprot,154 uniprot,606 uniprot,1195 uniprot,1232 uniprot,1381 xenoMrna,137 xenoRefGene,68 haussler augustusGene,292 chainDm2,461 chainDm2,506 chainDm2,550 netDm2,483 netDm2,527 have chainDm2,296 intronEst,7 rmsk,69 uniprot,170 uniprot,302 uniprot,942 uniprot,1000 uniprot,1042 uniprot,1444 having est,694 est,703 intronEst,730 intronEst,739 mrna,410 mrna,419 xenoMrna,442 xenoMrna,452 xenoRefGene,249 xenoRefGene,258 heavily uniprot,1533 helices uniprot,366 help ensGene,126 gc5Base,61 helpful est,145 intronEst,220 mrna,91 xenoMrna,165 hence xenoMrna,91 here chainDm2,403 intronEst,482 uniprot,1795 xenoMrna,86 xenoMrna,418 heterochromatic gap,22 hg17 blastHg17KG,4 blastHg17KG,32 hg19 uniprot,847 uniprot,860 hg38 uniprot,700 uniprot,843 uniprot,1177 uniprot,1367 uniprot,1909 hgdownload.soe.ucsc.edu uniprot,1814 uniprot,1906 uniprot,1916 hgsc gold,52 scaffolds,55 hiatt xenoRefGene,324 hidden augustusGene,324 uniprot,182 uniprot,223 hide uniprot,659 uniprot,667 xenoRefGene,192 hierarchical geneid,64 hierarchy netDm2,314 high brhInparalog,74 gc5Base,29 higher netDm2,346 rmsk,200 higher-level netDm2,363 higher-scoring netDm2,307 netDm2,326 highest est,696 intronEst,732 mrna,412 uniprot,948 uniprot,1113 xenoMrna,444 xenoRefGene,251 highest-scoring netDm2,80 netDm2,273 highlight est,336 gc5Base,49 intronEst,400 mrna,282 xenoMrna,345 highlighted est,306 est,324 intronEst,370 intronEst,388 mrna,252 mrna,270 uniprot,580 xenoMrna,315 xenoMrna,333 highly microsat,40 hinrichs chainDm2,502 netDm2,479 hiram gc5Base,82 his chainDm2,435 netDm2,454 homologs brhInparalog,1 homology brhInparalog,25 homology-based brhInparalog,3 brhInparalog,69 honeybee brhInparalog,31 gold,76 scaffolds,79 honeybee1 augustusGene,217 hou chainDm2,414 netDm2,433 how netDm2,374 netDm2,391 http uniprot,1813 https uniprot,1905 uniprot,1915 hub uniprot,711 uniprot,1672 uniprot,1679 hubbard ensGene,44 ensGene,168 hum uniprot,2043 human augustusGene,205 augustusGene,210 augustusGene,276 blastHg17KG,1 blastHg17KG,3 blastHg17KG,43 blastHg17KG,51 chainDm2,519 genscan,217 gold,24 gold,267 netDm2,496 scaffolds,27 scaffolds,182 uniprot,699 uniprot,940 uniprot,2040 human-mouse chainDm2,554 netDm2,531 hybridizes est,500 intronEst,536 i est,754 est,778 intronEst,789 mrna,471 mrna,495 xenoMrna,500 i.e intronEst,72 id uniprot,1026 uniprot,1051 uniprot,1060 uniprot,1282 identical uniprot,1106 uniprot,1144 uniprot,1147 identified blastDm2FB,31 blastHg17KG,29 brhInparalog,86 chainDm2,430 est,700 intronEst,736 netDm2,449 xenoRefGene,255 identify geneid,165 identity est,698 est,706 est,718 intronEst,734 intronEst,742 intronEst,754 microsat,71 mrna,414 mrna,422 mrna,434 xenoMrna,446 xenoMrna,455 xenoMrna,467 xenoRefGene,253 xenoRefGene,261 xenoRefGene,273 ids uniprot,1292 if est,279 est,291 est,307 est,343 est,360 gap,40 gold,223 intronEst,343 intronEst,355 intronEst,371 intronEst,407 intronEst,424 mrna,225 mrna,237 mrna,253 mrna,289 mrna,306 uniprot,602 uniprot,688 uniprot,1030 uniprot,1077 uniprot,1230 uniprot,1261 uniprot,1323 uniprot,1442 xenoMrna,288 xenoMrna,300 xenoMrna,316 xenoMrna,352 xenoMrna,369 xenoRefGene,205 ignored uniprot,1426 ii215-25 augustusGene,338 imperfect simpleRepeat,19 important uniprot,900 improve augustusGene,302 in augustusGene,101 blastDm2FB,32 blastHg17KG,30 brhInparalog,81 chainDm2,45 chainDm2,67 chainDm2,113 chainDm2,121 chainDm2,136 chainDm2,155 chainDm2,158 chainDm2,198 chainDm2,215 chainDm2,244 chainDm2,274 chainDm2,286 chainDm2,515 ensGene,37 ensGene,50 ensGene,83 ensGene,90 ensGene,95 est,24 est,37 est,60 est,151 est,172 est,195 est,205 est,223 est,276 est,398 est,531 est,579 est,689 gap,12 gap,37 gap,93 gap,109 gc5Base,5 gc5Base,26 gc5Base,43 geneid,45 geneid,57 geneid,66 geneid,186 genscan,101 genscan,150 genscan,162 genscan,165 genscan,184 genscan,188 genscan,198 genscan,216 gold,118 gold,126 gold,145 gold,174 gold,211 intronEst,25 intronEst,48 intronEst,80 intronEst,94 intronEst,138 intronEst,226 intronEst,247 intronEst,270 intronEst,280 intronEst,298 intronEst,340 intronEst,462 intronEst,567 intronEst,615 intronEst,725 intronEst,761 microsat,42 microsat,49 modelRefGene,49 mrna,22 mrna,41 mrna,97 mrna,118 mrna,141 mrna,151 mrna,169 mrna,222 mrna,405 netDm2,51 netDm2,68 netDm2,86 netDm2,91 netDm2,100 netDm2,112 netDm2,126 netDm2,168 netDm2,185 netDm2,216 netDm2,234 netDm2,248 netDm2,275 netDm2,316 netDm2,324 netDm2,340 netDm2,373 netDm2,385 netDm2,492 rmsk,45 rmsk,63 rmsk,97 rmsk,101 rmsk,110 rmsk,179 rmsk,276 scaffolds,14 scaffolds,121 scaffolds,129 scaffolds,148 uniprot,67 uniprot,148 uniprot,161 uniprot,177 uniprot,242 uniprot,291 uniprot,313 uniprot,427 uniprot,505 uniprot,509 uniprot,570 uniprot,581 uniprot,586 uniprot,591 uniprot,737 uniprot,755 uniprot,854 uniprot,870 uniprot,882 uniprot,1066 uniprot,1132 uniprot,1151 uniprot,1171 uniprot,1190 uniprot,1199 uniprot,1252 uniprot,1258 uniprot,1272 uniprot,1466 uniprot,1637 uniprot,1663 uniprot,1734 uniprot,1752 uniprot,1849 uniprot,1864 xenoMrna,23 xenoMrna,45 xenoMrna,68 xenoMrna,171 xenoMrna,192 xenoMrna,215 xenoMrna,225 xenoMrna,243 xenoMrna,285 xenoMrna,437 xenoRefGene,244 include est,133 est,338 est,362 intronEst,208 intronEst,402 intronEst,426 mrna,79 mrna,284 mrna,308 rmsk,130 rmsk,143 xenoMrna,153 xenoMrna,347 xenoMrna,371 included augustusGene,160 blastDm2FB,127 blastDm2FB,150 blastHg17KG,116 blastHg17KG,139 includes rmsk,168 uniprot,1587 including est,7 gold,161 intronEst,116 rmsk,159 scaffolds,164 uniprot,1700 incorrect uniprot,1361 indels microsat,74 indicate chainDm2,104 chainDm2,209 est,71 mrna,52 xenoMrna,56 indicates est,79 intronEst,144 intronEst,154 xenoMrna,73 xenoMrna,95 xenoRefGene,60 individual chainDm2,206 netDm2,183 information augustusGene,36 blastDm2FB,163 blastHg17KG,152 ensGene,19 ensGene,159 est,78 est,413 est,437 gc5Base,55 genscan,51 genscan,126 intronEst,153 intronEst,477 microsat,97 mrna,350 mrna,376 netDm2,146 netDm2,159 netDm2,165 netDm2,341 rmsk,89 rmsk,283 simpleRepeat,58 uniprot,678 uniprot,1842 uniprot,2038 xenoMrna,63 xenoMrna,413 xenoRefGene,177 initiate rmsk,275 initio augustusGene,4 augustusGene,17 input uniprot,1952 insect brhInparalog,83 inserted chainDm2,298 netDm2,397 insertion chainDm2,120 est,442 mrna,381 rmsk,193 inside uniprot,560 inspection uniprot,1653 instead xenoRefGene,120 institute rmsk,91 instructions ensGene,117 uniprot,1785 integrator ensGene,71 uniprot,1725 interactions uniprot,316 interactively ensGene,63 uniprot,1717 interest unipInterest,1 unipInterest,5 uniprot,299 intergenic genscan,47 international est,739 intronEst,778 mrna,456 xenoMrna,489 internet rmsk,245 interspersed rmsk,26 rmsk,125 rmsk,133 into chainDm2,323 chainDm2,331 chainDm2,339 chainDm2,357 est,255 est,460 est,467 est,612 gold,86 gold,114 intronEst,330 intronEst,496 intronEst,503 intronEst,648 mrna,201 netDm2,300 scaffolds,89 scaffolds,117 uniprot,57 xenoMrna,275 intractable gap,21 intron augustusGene,88 augustusGene,330 est,662 intronEst,71 intronEst,698 introns est,679 genscan,45 intronEst,715 inv netDm2,221 inversions chainDm2,63 chainDm2,143 invertebrate xenoMrna,21 inverted netDm2,359 involve chainDm2,133 is blastDm2FB,153 blastHg17KG,142 chainDm2,74 est,295 est,311 est,347 est,364 est,453 est,465 est,474 est,494 est,623 est,667 gap,55 gap,58 gap,66 gap,98 gc5Base,32 geneid,33 geneid,51 geneid,130 gold,129 gold,138 gold,148 gold,158 gold,236 gold,240 intronEst,75 intronEst,98 intronEst,359 intronEst,375 intronEst,411 intronEst,428 intronEst,489 intronEst,501 intronEst,510 intronEst,530 intronEst,659 intronEst,703 microsat,88 mrna,241 mrna,257 mrna,293 mrna,310 netDm2,35 netDm2,54 netDm2,166 rmsk,95 scaffolds,132 scaffolds,141 scaffolds,151 scaffolds,161 simpleRepeat,28 uniprot,159 uniprot,222 uniprot,417 uniprot,626 uniprot,707 uniprot,839 uniprot,911 uniprot,958 uniprot,972 uniprot,1052 uniprot,1081 uniprot,1209 uniprot,1245 uniprot,1256 uniprot,1264 uniprot,1283 uniprot,1334 uniprot,1390 uniprot,1564 uniprot,1578 uniprot,1603 uniprot,1630 uniprot,1732 xenoMrna,67 xenoMrna,121 xenoMrna,127 xenoMrna,304 xenoMrna,320 xenoMrna,356 xenoMrna,373 isoform unipAliSwissprot,13 uniprot,157 uniprot,186 uniprot,671 isoforms unipAliSwissprot,17 uniprot,145 uniprot,164 isolated est,454 gold,100 intronEst,490 scaffolds,103 issue est,769 est,795 intronEst,806 mrna,486 mrna,512 uniprot,2004 xenoMrna,517 xenoRefGene,356 xenoRefGene,390 it chainDm2,40 est,93 est,107 est,516 gap,57 genscan,143 intronEst,168 intronEst,182 intronEst,552 netDm2,34 netDm2,220 netDm2,232 uniprot,228 uniprot,625 uniprot,1586 item xenoRefGene,77 items est,65 est,138 est,148 est,342 intronEst,213 intronEst,223 intronEst,406 mrna,46 mrna,84 mrna,94 mrna,288 netDm2,184 xenoMrna,50 xenoMrna,158 xenoMrna,168 xenoMrna,351 xenoRefGene,104 its uniprot,230 uniprot,762 uniprot,1316 uniprot,1348 itself uniprot,715 j blastDm2FB,182 blastHg17KG,171 ensGene,183 est,758 est,782 genscan,220 intronEst,793 mrna,475 mrna,499 rmsk,99 rmsk,305 xenoMrna,504 xenoRefGene,335 jan chainDm2,561 ensGene,199 est,766 est,791 intronEst,802 microsat,129 mrna,483 mrna,508 netDm2,538 simpleRepeat,89 uniprot,2001 xenoMrna,513 xenoRefGene,353 xenoRefGene,386 jim blastDm2FB,195 blastDm2FB,208 blastHg17KG,186 blastHg17KG,199 chainDm2,452 chainDm2,477 netDm2,422 netDm2,472 joined chainDm2,89 journal rmsk,313 jun geneid,171 june blastDm2FB,40 jurka rmsk,98 rmsk,304 k augustusGene,268 est,752 mrna,469 karlin genscan,148 genscan,209 karsch-mizrachi est,753 est,777 intronEst,788 mrna,470 mrna,494 xenoMrna,499 kasif genscan,193 kb gold,131 gold,140 scaffolds,134 scaffolds,143 kd xenoRefGene,321 xenoRefGene,363 kd-tree chainDm2,363 chainDm2,390 keep uniprot,1486 kent blastDm2FB,196 blastDm2FB,209 blastHg17KG,187 blastHg17KG,200 chainDm2,453 chainDm2,478 chainDm2,498 chainDm2,540 est,801 intronEst,808 mrna,518 netDm2,423 netDm2,473 netDm2,475 netDm2,517 xenoMrna,519 xenoRefGene,303 kept est,724 mrna,440 xenoMrna,473 xenoRefGene,279 km xenoRefGene,339 known blastDm2FB,29 blastHg17KG,27 blastHg17KG,33 blastHg17KG,44 brhInparalog,50 gap,56 gold,237 xenoRefGene,15 l ensGene,179 lab augustusGene,252 label genscan,98 xenoRefGene,101 xenoRefGene,113 xenoRefGene,136 labeled uniprot,457 xenoRefGene,106 labeling est,387 intronEst,451 labels xenoRefGene,78 landrum xenoRefGene,336 largely chainDm2,108 larger intronEst,146 largest netDm2,79 least blastDm2FB,140 blastHg17KG,129 est,715 intronEst,68 intronEst,77 intronEst,751 microsat,29 microsat,78 mrna,431 xenoMrna,464 xenoRefGene,270 lee uniprot,1955 length augustusGene,82 est,38 est,663 genscan,39 gold,144 intronEst,49 intronEst,81 intronEst,699 scaffolds,147 less uniprot,680 xenoRefGene,234 level est,707 intronEst,91 intronEst,743 mrna,423 netDm2,74 netDm2,108 netDm2,113 netDm2,120 netDm2,178 netDm2,205 netDm2,218 netDm2,250 rmsk,175 xenoMrna,456 xenoRefGene,62 xenoRefGene,262 libraries est,560 intronEst,596 rmsk,224 rmsk,297 library rmsk,83 lifted uniprot,1492 lifting uniprot,1843 liftover uniprot,887 uniprot,1878 uniprot,1897 uniprot,1920 uniprot,1924 uniprot,1932 light unipAliSwissprot,14 uniprot,506 uniprot,592 xenoRefGene,71 light-blue uniprot,178 lighter rmsk,207 like ensGene,148 uniprot,1541 likely augustusGene,111 microsat,17 line gap,65 gold,239 netDm2,156 rmsk,136 uniprot,1872 uniprot,1876 line-up netDm2,223 line-ups netDm2,208 lineage-specific chainDm2,427 netDm2,446 lines chainDm2,96 chainDm2,103 chainDm2,127 netDm2,136 link gc5Base,63 uniprot,491 uniprot,1675 linkage gold,88 scaffolds,91 linked gold,107 scaffolds,110 linux.x86_64 uniprot,1919 lipid uniprot,346 lipman blastDm2FB,175 blastHg17KG,164 est,755 est,779 intronEst,790 mrna,472 mrna,496 xenoMrna,501 lipoification uniprot,577 list est,212 intronEst,287 mrna,158 uniprot,979 uniprot,1165 uniprot,1831 xenoMrna,232 listed ensGene,49 literature uniprot,434 lm uniprot,2019 local blastDm2FB,178 blastHg17KG,167 chainDm2,62 chainDm2,149 ensGene,73 located simpleRepeat,21 location chainDm2,214 uniprot,554 uniprot,767 uniprot,1417 locations gap,3 uniprot,451 log-likelihood geneid,111 logic est,290 intronEst,354 mrna,236 xenoMrna,299 long est,678 intronEst,714 rmsk,132 rmsk,137 longer chainDm2,32 longest netDm2,201 lot uniprot,1950 low rmsk,29 rmsk,152 lower netDm2,177 lower-level netDm2,348 netDm2,354 ls-snp uniprot,1536 ltr rmsk,141 m augustusGene,287 augustusGene,289 augustusGene,317 est,750 mrna,467 made netDm2,467 uniprot,931 uniprot,938 maglott xenoRefGene,366 mailing uniprot,1830 main unipAliSwissprot,12 uniprot,156 uniprot,1548 maintained uniprot,719 make blastDm2FB,78 blastHg17KG,67 est,449 est,515 intronEst,485 intronEst,551 uniprot,1406 makes chainDm2,361 making uniprot,1978 mammalian xenoRefGene,346 manner uniprot,1469 manual uniprot,1652 many est,147 gold,263 intronEst,106 intronEst,222 mrna,93 netDm2,87 scaffolds,178 uniprot,932 uniprot,1124 xenoMrna,167 map chainDm2,242 gap,112 uniprot,758 uniprot,1885 mapped augustusGene,298 blastHg17KG,6 uniprot,26 uniprot,97 uniprot,117 uniprot,132 uniprot,200 uniprot,213 uniprot,632 uniprot,1517 mapping gap,4 gc5Base,8 gold,5 scaffolds,4 uniprot,725 uniprot,752 uniprot,775 uniprot,904 uniprot,1213 uniprot,1322 uniprot,1613 uniprot,1853 mappings uniprot,1362 mar augustusGene,309 mario augustusGene,102 augustusGene,283 mark est,536 intronEst,572 uniprot,1539 uniprot,1956 markers microsat,23 markov augustusGene,325 geneid,115 masked rmsk,71 match chainDm2,219 est,84 est,300 est,315 est,356 est,374 intronEst,159 intronEst,364 intronEst,379 intronEst,420 intronEst,438 mrna,246 mrna,261 mrna,302 mrna,320 netDm2,202 netDm2,240 uniprot,1305 uniprot,1341 xenoMrna,85 xenoMrna,309 xenoMrna,324 xenoMrna,365 xenoMrna,383 matched blastDm2FB,138 blastHg17KG,127 matches est,72 mrna,53 xenoMrna,57 matching chainDm2,222 est,90 intronEst,165 uniprot,1068 uniprot,1075 xenoMrna,100 mature est,506 intronEst,542 unipChain,3 uniprot,251 uniprot,292 maximally chainDm2,375 maximilian uniprot,1944 maximizing geneid,132 maximum blastDm2FB,105 blastHg17KG,94 est,661 intronEst,697 maxtracks augustusGene,139 may chainDm2,140 est,143 est,262 est,272 est,380 est,431 est,511 est,513 est,525 est,527 est,547 est,672 gc5Base,40 intronEst,218 intronEst,336 intronEst,444 intronEst,547 intronEst,549 intronEst,561 intronEst,563 intronEst,583 intronEst,708 mrna,89 mrna,208 mrna,218 mrna,326 mrna,370 netDm2,116 rmsk,234 rmsk,256 rmsk,266 simpleRepeat,43 uniprot,2046 xenoMrna,163 xenoMrna,281 xenoMrna,389 mb gold,150 gold,160 scaffolds,153 scaffolds,163 mcgarvey xenoRefGene,338 md5 uniprot,1601 mdash est,485 est,489 intronEst,521 intronEst,525 mediating uniprot,314 medicine gold,32 gold,275 scaffolds,35 scaffolds,190 medium xenoRefGene,73 mel blastDm2FB,2 chainDm2,2 est,2 mrna,2 netDm2,2 melanogaster blastDm2FB,5 blastDm2FB,35 blastDm2FB,54 blastDm2FB,62 chainDm2,5 chainDm2,20 chainDm2,48 chainDm2,72 chainDm2,116 chainDm2,302 chainDm2,350 netDm2,5 netDm2,22 netDm2,48 mellifera augustusGene,216 blastDm2FB,45 blastDm2FB,87 blastDm2FB,97 blastHg17KG,76 blastHg17KG,86 brhInparalog,45 chainDm2,22 chainDm2,51 chainDm2,124 chainDm2,172 chainDm2,304 chainDm2,355 est,5 est,19 est,647 gold,19 intronEst,4 intronEst,20 intronEst,121 intronEst,683 mrna,5 mrna,20 mrna,389 netDm2,24 netDm2,32 scaffolds,22 xenoMrna,4 xenoMrna,30 xenoMrna,427 xenoRefGene,4 xenoRefGene,25 xenoRefGene,225 menu xenoRefGene,174 method ensGene,120 uniprot,726 uniprot,753 uniprot,776 methods augustusGene,46 blastDm2FB,47 blastHg17KG,36 brhInparalog,34 chainDm2,293 ensGene,29 ensGene,35 est,447 geneid,49 genscan,130 genscan,197 gold,46 intronEst,483 microsat,45 modelRefGene,25 modelRefGene,38 mrna,386 netDm2,252 netDm2,261 rmsk,210 scaffolds,49 simpleRepeat,55 uniprot,777 xenoMrna,419 xenoRefGene,217 mica geneid,43 micro-satellites rmsk,151 microsatellite microsat,1 microsat,22 microsatellites microsat,2 might est,108 est,681 intronEst,183 intronEst,717 miller blastDm2FB,171 blastHg17KG,160 chainDm2,421 chainDm2,458 chainDm2,484 chainDm2,504 chainDm2,552 netDm2,440 netDm2,481 netDm2,529 million gold,59 scaffolds,62 minexonintronprob augustusGene,135 minmeanexonintronprob augustusGene,137 minmei chainDm2,413 netDm2,432 mismatch rmsk,188 misplacements uniprot,853 mj xenoRefGene,337 mode est,63 est,128 gold,176 intronEst,141 intronEst,203 mrna,44 mrna,74 netDm2,71 rmsk,113 xenoMrna,48 xenoMrna,148 model augustusGene,121 augustusGene,326 geneid,116 genscan,140 modelRefGene,17 modeling genscan,182 models augustusGene,49 augustusGene,65 augustusGene,97 augustusGene,145 augustusGene,178 genscan,158 modelRefGene,5 modelRefGene,14 modelRefGene,56 uniprot,733 modes chainDm2,204 modifications unipModif,2 unipModif,6 uniprot,340 uniprot,574 modified rmsk,57 uniprot,343 modsnp uniprot,2030 moiety-binding uniprot,347 mol blastDm2FB,183 blastHg17KG,172 genscan,221 molecular genscan,199 months uniprot,1573 more augustusGene,35 blastDm2FB,119 blastDm2FB,162 blastHg17KG,108 blastHg17KG,151 chainDm2,129 chainDm2,190 ensGene,18 ensGene,158 est,68 est,175 est,282 est,412 est,436 genscan,50 genscan,125 genscan,163 gold,164 intronEst,250 intronEst,346 intronEst,476 microsat,96 mrna,49 mrna,121 mrna,228 mrna,349 mrna,375 rmsk,282 scaffolds,167 simpleRepeat,57 uniprot,498 uniprot,691 uniprot,984 uniprot,1841 xenoMrna,53 xenoMrna,195 xenoMrna,291 xenoMrna,412 xenoRefGene,176 most augustusGene,93 augustusGene,110 brhInparalog,60 est,484 intronEst,520 rmsk,215 uniprot,683 uniprot,756 uniprot,1295 uniprot,1391 mostly uniprot,1365 motifs uniprot,388 mouse chainDm2,517 netDm2,494 uniprot,521 uniprot,535 mrna est,9 est,507 est,523 est,606 intronEst,10 intronEst,543 intronEst,559 intronEst,642 mrna,9 mrna,14 mrna,129 mrna,403 mrna,443 mrna,450 xenoMrna,8 xenoMrna,22 xenoMrna,203 xenoMrna,435 xenoMrna,476 xenoMrna,483 mrnas mrna,3 mrna,6 mrna,21 mrna,139 mrna,244 mrna,259 mrna,300 mrna,318 mrna,343 mrna,390 xenoMrna,2 xenoMrna,5 xenoMrna,213 xenoMrna,307 xenoMrna,322 xenoMrna,363 xenoMrna,381 xenoMrna,406 xenoMrna,421 much netDm2,375 netDm2,392 mujica uniprot,1967 multiple chainDm2,163 est,260 est,690 intronEst,726 mrna,206 mrna,406 uniprot,58 uniprot,1067 uniprot,1095 xenoMrna,438 xenoRefGene,245 must intronEst,63 mutagenesis uniprot,353 mutat uniprot,2044 mutated uniprot,618 mutation chainDm2,150 mutation-related uniprot,408 mutations unipMut,1 unipMut,5 uniprot,352 myers blastDm2FB,173 blastHg17KG,162 mysql ensGene,115 ensGene,125 n50 gold,121 gold,133 scaffolds,124 scaffolds,136 name chainDm2,280 est,201 intronEst,276 mrna,147 uniprot,105 uniprot,461 uniprot,541 uniprot,1577 xenoMrna,221 xenoRefGene,109 xenoRefGene,119 xenoRefGene,124 names chainDm2,208 xenoRefGene,131 native augustusGene,295 natl chainDm2,522 netDm2,499 natural netDm2,313 nbci uniprot,822 ncbi blastDm2FB,157 blastHg17KG,146 modelRefGene,1 modelRefGene,3 modelRefGene,12 modelRefGene,20 modelRefGene,33 modelRefGene,39 modelRefGene,63 uniprot,840 uniprot,856 uniprot,1024 uniprot,1046 uniprot,1049 uniprot,1079 uniprot,1204 uniprot,1274 uniprot,1280 uniprot,1289 uniprot,1299 xenoRefGene,29 xenoRefGene,299 xenoRefGene,368 necessary netDm2,297 nematodes augustusGene,211 net netDm2,3 netDm2,12 netclass netDm2,367 netDm2,410 nets netDm2,465 netsyntenic netDm2,335 netDm2,408 new augustusGene,329 newer est,558 intronEst,594 rmsk,236 next blastDm2FB,72 blastHg17KG,61 chainDm2,259 chainDm2,288 chainDm2,374 geneid,88 nig augustusGene,270 no blastDm2FB,109 blastHg17KG,98 est,95 intronEst,170 microsat,73 uniprot,1031 uniprot,1078 uniprot,1262 uniprot,1324 non-a xenoMrna,3 xenoRefGene,3 non-coding augustusGene,75 xenoRefGene,193 non-mrna est,627 intronEst,663 non-protein-coding xenoRefGene,18 xenoRefGene,201 non-redundant xenoRefGene,374 nonsyn netDm2,238 nor xenoMrna,126 not est,352 est,487 est,514 est,528 gold,105 gold,111 intronEst,416 intronEst,523 intronEst,550 intronEst,564 mrna,298 netDm2,302 rmsk,272 scaffolds,108 scaffolds,114 uniprot,169 uniprot,627 uniprot,959 uniprot,1130 uniprot,1455 xenoMrna,122 xenoMrna,361 note est,658 intronEst,694 rmsk,230 uniprot,695 novo augustusGene,304 now uniprot,1680 ns netDm2,382 nuclear rmsk,126 rmsk,134 nucleic ensGene,195 est,762 est,787 intronEst,798 microsat,125 mrna,479 mrna,504 simpleRepeat,85 uniprot,1997 xenoMrna,509 xenoRefGene,349 xenoRefGene,382 number augustusGene,153 intronEst,147 rmsk,203 o xenoRefGene,331 oacute geneid,24 geneid,40 observed uniprot,1114 obtain uniprot,1803 obtained augustusGene,126 uniprot,1506 uniprot,1695 occur simpleRepeat,36 oct augustusGene,334 blastDm2FB,186 blastHg17KG,175 of augustusGene,72 augustusGene,84 augustusGene,92 augustusGene,94 augustusGene,154 augustusGene,195 augustusGene,236 blastDm2FB,22 blastDm2FB,38 blastDm2FB,122 blastDm2FB,134 blastDm2FB,142 blastDm2FB,155 blastHg17KG,20 blastHg17KG,111 blastHg17KG,123 blastHg17KG,131 blastHg17KG,144 brhInparalog,26 brhInparalog,42 chainDm2,148 chainDm2,169 chainDm2,217 chainDm2,271 chainDm2,281 chainDm2,365 chainDm2,371 chainDm2,378 chainDm2,446 chainDm2,468 ensGene,33 ensGene,134 est,43 est,73 est,82 est,100 est,102 est,137 est,176 est,202 est,213 est,249 est,318 est,428 est,505 est,521 est,539 est,556 est,618 est,626 est,630 est,710 gap,20 gap,46 gap,52 gap,82 gap,89 gap,101 gc5Base,19 gc5Base,46 gc5Base,52 gc5Base,67 gc5Base,76 geneid,28 geneid,35 geneid,101 geneid,104 geneid,113 geneid,124 geneid,135 geneid,138 geneid,147 genscan,43 genscan,110 genscan,134 genscan,212 gold,16 gold,31 gold,39 gold,67 gold,73 gold,81 gold,123 gold,135 gold,155 gold,202 gold,229 gold,252 gold,274 intronEst,33 intronEst,54 intronEst,66 intronEst,92 intronEst,104 intronEst,113 intronEst,148 intronEst,157 intronEst,175 intronEst,177 intronEst,212 intronEst,251 intronEst,277 intronEst,288 intronEst,324 intronEst,382 intronEst,541 intronEst,557 intronEst,575 intronEst,592 intronEst,654 intronEst,662 intronEst,666 intronEst,746 microsat,27 microsat,55 microsat,64 microsat,81 modelRefGene,32 mrna,54 mrna,83 mrna,122 mrna,148 mrna,159 mrna,195 mrna,264 mrna,367 mrna,426 netDm2,29 netDm2,172 netDm2,192 netDm2,376 netDm2,417 netDm2,463 rmsk,39 rmsk,59 rmsk,84 rmsk,122 rmsk,176 rmsk,186 rmsk,204 rmsk,218 rmsk,314 scaffolds,19 scaffolds,34 scaffolds,42 scaffolds,70 scaffolds,76 scaffolds,84 scaffolds,126 scaffolds,138 scaffolds,158 scaffolds,189 simpleRepeat,40 unipAliSwissprot,5 unipAliTrembl,5 unipInterest,4 uniprot,83 uniprot,269 uniprot,298 uniprot,310 uniprot,385 uniprot,407 uniprot,420 uniprot,452 uniprot,465 uniprot,542 uniprot,561 uniprot,652 uniprot,677 uniprot,877 uniprot,902 uniprot,980 uniprot,1111 uniprot,1125 uniprot,1159 uniprot,1166 uniprot,1181 uniprot,1288 uniprot,1298 uniprot,1306 uniprot,1315 uniprot,1347 uniprot,1360 uniprot,1363 uniprot,1397 uniprot,1436 uniprot,1457 uniprot,1590 uniprot,1594 uniprot,1639 uniprot,1646 uniprot,1656 uniprot,1666 uniprot,1684 uniprot,1687 uniprot,1710 uniprot,1951 xenoMrna,18 xenoMrna,58 xenoMrna,76 xenoMrna,98 xenoMrna,108 xenoMrna,157 xenoMrna,196 xenoMrna,222 xenoMrna,233 xenoMrna,269 xenoMrna,327 xenoMrna,459 xenoRefGene,63 xenoRefGene,82 xenoRefGene,96 xenoRefGene,121 xenoRefGene,233 xenoRefGene,265 xenoRefGene,377 off chainDm2,250 chainDm2,256 xenoRefGene,134 offers genscan,79 often chainDm2,179 chainDm2,191 ograve geneid,42 older uniprot,1560 uniprot,1647 oligo-dt est,498 intronEst,534 on augustusGene,29 augustusGene,37 augustusGene,151 blastDm2FB,164 blastHg17KG,153 brhInparalog,24 chainDm2,238 chainDm2,264 ensGene,20 ensGene,118 ensGene,123 ensGene,129 ensGene,140 est,232 est,281 gap,49 genscan,27 genscan,52 intronEst,307 intronEst,345 mrna,178 mrna,227 netDm2,140 netDm2,154 netDm2,204 netDm2,209 netDm2,224 netDm2,263 rmsk,74 rmsk,243 uniprot,19 uniprot,61 uniprot,129 uniprot,172 uniprot,232 uniprot,443 uniprot,482 uniprot,648 uniprot,728 uniprot,772 uniprot,809 uniprot,859 uniprot,1035 uniprot,1139 uniprot,1176 uniprot,1366 uniprot,1446 uniprot,1534 uniprot,1558 uniprot,1567 uniprot,1581 uniprot,1605 uniprot,1887 uniprot,2039 xenoMrna,252 xenoMrna,290 xenoRefGene,345 once est,266 mrna,212 uniprot,647 one augustusGene,169 chainDm2,156 chainDm2,272 est,173 est,284 est,317 intronEst,69 intronEst,73 intronEst,248 intronEst,348 intronEst,381 mrna,119 mrna,230 mrna,263 netDm2,191 netDm2,290 netDm2,386 uniprot,74 uniprot,77 uniprot,155 uniprot,981 uniprot,1098 uniprot,1638 xenoMrna,193 xenoMrna,293 xenoMrna,326 ones uniprot,1041 ongoing uniprot,1569 only chainDm2,268 est,157 est,297 est,370 est,403 est,701 intronEst,232 intronEst,361 intronEst,434 intronEst,467 intronEst,737 microsat,61 mrna,103 mrna,243 mrna,316 mrna,417 uniprot,645 uniprot,975 uniprot,1178 uniprot,1302 uniprot,1804 xenoMrna,177 xenoMrna,306 xenoMrna,379 xenoMrna,449 xenoRefGene,210 xenoRefGene,256 opposite netDm2,236 option augustusGene,167 augustusGene,187 est,416 genscan,94 intronEst,480 mrna,353 xenoMrna,416 xenoRefGene,114 xenoRefGene,166 optional xenoRefGene,144 options est,445 gc5Base,70 genscan,85 mrna,384 or blastDm2FB,210 blastHg17KG,201 chainDm2,94 chainDm2,118 chainDm2,151 ensGene,68 ensGene,89 ensGene,110 est,174 est,309 est,328 est,337 est,402 est,480 est,512 est,526 intronEst,249 intronEst,373 intronEst,392 intronEst,401 intronEst,466 intronEst,516 intronEst,548 intronEst,562 mrna,120 mrna,255 mrna,274 mrna,283 netDm2,175 netDm2,358 netDm2,387 uniprot,317 uniprot,389 uniprot,436 uniprot,829 uniprot,888 uniprot,982 uniprot,1038 uniprot,1205 uniprot,1266 uniprot,1401 uniprot,1449 uniprot,1722 uniprot,1776 uniprot,1835 uniprot,1879 xenoMrna,94 xenoMrna,194 xenoMrna,318 xenoMrna,337 xenoMrna,346 xenoRefGene,132 order gap,43 gold,226 uniprot,872 ordered gold,93 scaffolds,96 organ est,198 est,204 intronEst,273 intronEst,279 mrna,144 mrna,150 xenoMrna,218 xenoMrna,224 organism chainDm2,247 chainDm2,277 organism-specific blastDm2FB,104 blastHg17KG,93 organisms netDm2,403 rmsk,261 uniprot,998 xenoMrna,26 xenoRefGene,21 organizes chainDm2,342 orientation gap,45 gold,228 netDm2,237 xenoMrna,75 xenoMrna,97 orientations xenoMrna,107 oriented gold,95 scaffolds,98 orthologous netDm2,39 orthology brhInparalog,76 ostell est,757 est,781 intronEst,792 mrna,474 mrna,498 xenoMrna,503 other augustusGene,208 netDm2,102 netDm2,195 rmsk,165 unipOther,1 unipOther,4 uniprot,90 uniprot,122 uniprot,205 uniprot,319 uniprot,393 uniprot,396 uniprot,862 uniprot,1200 xenoMrna,1 xenoMrna,27 xenoRefGene,1 xenoRefGene,22 others gold,98 scaffolds,101 uniprot,1312 uniprot,1344 otherwise est,682 intronEst,718 ouml augustusGene,269 our augustusGene,43 ensGene,26 ensGene,84 ensGene,91 ensGene,113 ensGene,124 ensGene,130 ensGene,141 genscan,58 uniprot,891 uniprot,1697 uniprot,1765 uniprot,1829 uniprot,1836 uniprot,1870 uniprot,1874 out chainDm2,364 outputs rmsk,35 outside est,617 intronEst,653 uniprot,558 over blastDm2FB,118 blastDm2FB,132 blastHg17KG,107 blastHg17KG,121 chainDm2,165 chainDm2,388 uniprot,522 uniprot,536 overlapping chainDm2,65 chainDm2,144 gap,102 own uniprot,724 p genscan,205 pac chainDm2,491 pack chainDm2,200 page ensGene,127 ensGene,166 est,113 est,425 est,446 genscan,78 genscan,123 intronEst,188 modelRefGene,28 mrna,59 mrna,364 mrna,385 rmsk,77 uniprot,236 uniprot,651 uniprot,1158 uniprot,1585 uniprot,2027 xenoMrna,133 xenoRefGene,100 xenoRefGene,191 pages netDm2,268 pairwise chainDm2,487 paralogs chainDm2,194 parra geneid,157 geneid,178 part blastDm2FB,154 blastHg17KG,143 geneid,34 netDm2,28 particular augustusGene,234 chainDm2,167 uniprot,1019 parts xenoMrna,70 past uniprot,1690 patch uniprot,1423 patches uniprot,1432 path gold,181 gold,188 gold,213 patterns augustusGene,56 penalty blastDm2FB,111 blastHg17KG,100 pennsylvania chainDm2,409 netDm2,428 peptide unipLocSignal,2 uniprot,477 uniprot,565 peptides blastDm2FB,24 blastHg17KG,22 unipLocSignal,5 uniprot,239 uniprot,512 percent gc5Base,2 gc5Base,4 gc5Base,14 percentage gc5Base,18 perfect microsat,31 perhaps est,608 intronEst,644 period microsat,65 permitted rmsk,273 pharmaceuticals uniprot,1969 phenotype uniprot,432 phosphorylation uniprot,590 pia uniprot,1971 pick uniprot,1089 pipeline uniprot,1537 pipelines uniprot,1850 place netDm2,287 placed gold,113 netDm2,329 scaffolds,116 places est,691 intronEst,727 mrna,407 xenoMrna,439 xenoRefGene,246 plasmid est,469 intronEst,505 please ensGene,41 ensGene,160 uniprot,685 uniprot,1439 uniprot,1826 plus geneid,108 pmc chainDm2,536 chainDm2,567 ensGene,206 est,773 est,799 est,817 geneid,197 microsat,136 mrna,490 mrna,516 mrna,534 netDm2,513 netDm2,544 simpleRepeat,96 uniprot,2008 xenoRefGene,318 xenoRefGene,360 xenoRefGene,394 pmc148217 microsat,137 simpleRepeat,97 pmc187518 est,818 mrna,535 xenoRefGene,319 pmc208784 chainDm2,537 netDm2,514 pmc308779 est,800 mrna,517 pmc310871 geneid,198 pmc3245120 uniprot,2009 pmc3531190 est,774 mrna,491 pmc3965018 xenoRefGene,361 pmc430961 chainDm2,568 netDm2,545 pmc539979 xenoRefGene,395 pmc99161 ensGene,207 pmid augustusGene,314 augustusGene,339 blastHg17KG,180 chainDm2,496 chainDm2,534 chainDm2,565 ensGene,204 est,771 est,797 est,815 geneid,176 geneid,195 genscan,229 microsat,134 mrna,488 mrna,514 mrna,532 netDm2,511 netDm2,542 rmsk,324 simpleRepeat,94 uniprot,2006 uniprot,2050 xenoRefGene,316 xenoRefGene,358 xenoRefGene,392 point est,551 intronEst,587 poly-a augustusGene,62 est,503 est,577 intronEst,539 intronEst,613 polymorphic microsat,41 simpleRepeat,46 polypeptide unipChain,6 uniprot,287 uniprot,289 population microsat,44 portion chainDm2,168 position geneid,84 uniprot,610 positions uniprot,1495 possible netDm2,96 uniprot,601 possibly simpleRepeat,18 post-processing uniprot,295 pre-mrna genscan,185 precompiled uniprot,1780 predict geneid,55 predicted blastDm2FB,27 blastDm2FB,49 blastHg17KG,25 blastHg17KG,39 geneid,77 geneid,125 uniprot,48 uniprot,193 xenoMrna,114 xenoRefGene,70 prediction augustusGene,321 brhInparalog,71 genscan,73 genscan,211 modelRefGene,37 modelRefGene,42 xenoRefGene,55 predictions augustusGene,6 augustusGene,11 augustusGene,18 augustusGene,26 augustusGene,191 blastDm2FB,15 blastHg17KG,13 brhInparalog,5 brhInparalog,10 brhInparalog,16 brhInparalog,37 brhInparalog,80 brhInparalog,101 ensGene,8 ensGene,12 ensGene,40 geneid,5 geneid,9 geneid,15 genscan,5 genscan,9 genscan,14 genscan,24 genscan,112 genscan,118 modelRefGene,9 modelRefGene,67 unipAliSwissprot,21 unipAliTrembl,13 unipChain,11 unipConflict,9 unipDisulfBond,9 unipDomain,7 unipInterest,9 unipLocCytopl,8 unipLocExtra,8 unipLocSignal,9 unipLocTransMemb,8 unipModif,10 unipMut,9 unipOther,9 unipRepeat,7 unipStruct,11 uniprot,10 xenoRefGene,10 xenoRefGene,157 xenoRefGene,186 predicts modelRefGene,45 prepared gc5Base,80 uniprot,712 present rmsk,44 scaffolds,13 presentation gc5Base,75 previous ensGene,132 uniprot,1654 primary unipStruct,4 uniprot,360 primed est,495 intronEst,531 primer est,482 intronEst,518 priming est,578 intronEst,614 principal gap,80 problem uniprot,1359 uniprot,1389 proc chainDm2,521 netDm2,498 procedure uniprot,990 process gap,30 modelRefGene,24 netDm2,311 uniprot,321 uniprot,879 uniprot,905 uniprot,1229 uniprot,1448 processed chainDm2,182 processing geneid,30 geneid,149 produce blastDm2FB,202 blastHg17KG,193 modelRefGene,54 produced brhInparalog,17 est,729 gold,21 gold,49 intronEst,768 mrna,446 scaffolds,24 scaffolds,52 xenoMrna,83 xenoMrna,479 xenoRefGene,284 products unipChain,5 program augustusGene,21 augustusGene,257 blastDm2FB,67 blastDm2FB,92 blastHg17KG,56 blastHg17KG,81 chainDm2,387 chainDm2,436 chainDm2,440 geneid,19 geneid,53 genscan,18 genscan,137 genscan,178 microsat,100 microsat,120 modelRefGene,43 mrna,399 netDm2,281 netDm2,334 netDm2,366 netDm2,455 rmsk,20 rmsk,34 simpleRepeat,62 simpleRepeat,80 uniprot,1529 programmatic ensGene,99 programs netDm2,411 uniprot,1877 project ensGene,194 xenoRefGene,301 projected uniprot,800 projects est,572 est,591 est,621 intronEst,608 intronEst,627 intronEst,657 pronounced uniprot,1392 prot.bed uniprot,1931 uniprot,1933 protein blastDm2FB,125 blastDm2FB,144 blastHg17KG,114 blastHg17KG,133 brhInparalog,59 unipChain,4 unipStruct,3 uniprot,5 uniprot,15 uniprot,84 uniprot,95 uniprot,111 uniprot,113 uniprot,137 uniprot,153 uniprot,194 uniprot,196 uniprot,252 uniprot,256 uniprot,267 uniprot,278 uniprot,293 uniprot,324 uniprot,359 uniprot,635 uniprot,672 uniprot,742 uniprot,760 uniprot,780 uniprot,790 uniprot,906 uniprot,916 uniprot,954 uniprot,966 uniprot,970 uniprot,1020 uniprot,1037 uniprot,1072 uniprot,1099 uniprot,1218 uniprot,1241 uniprot,1244 uniprot,1333 uniprot,1607 uniprot,1635 uniprot,1854 uniprot,1888 uniprot,1989 uniprot,1994 uniprot,2041 xenoMrna,82 xenoMrna,115 protein-coding augustusGene,73 xenoRefGene,16 xenoRefGene,199 protein-genome uniprot,875 uniprot,1174 protein-protein uniprot,315 protein-to-genome uniprot,1703 proteins blastDm2FB,3 blastDm2FB,11 blastDm2FB,50 blastHg17KG,2 blastHg17KG,5 blastHg17KG,40 brhInparalog,28 brhInparalog,51 unipAliSwissprot,7 unipAliTrembl,7 uniprot,243 uniprot,744 uniprot,925 uniprot,929 uniprot,1005 uniprot,1188 uniprot,1364 uniprot,1385 uniprot,1404 uniprot,1470 xenoRefGene,381 protoc geneid,168 provide uniprot,1860 provided uniprot,817 provides uniprot,489 providing augustusGene,254 brhInparalog,99 ensGene,153 geneid,151 genscan,175 gold,277 modelRefGene,65 rmsk,292 scaffolds,192 provisional xenoRefGene,72 pruitt xenoRefGene,320 xenoRefGene,362 pseudogenes chainDm2,183 chainDm2,197 uniprot,1184 psl est,57 intronEst,135 mrna,38 uniprot,1479 xenoMrna,42 pslmap uniprot,889 uniprot,1497 uniprot,1528 uniprot,1880 uniprot,1900 pslreps uniprot,1482 uniprot,1502 public ensGene,114 est,740 intronEst,779 mrna,457 uniprot,709 xenoMrna,490 publications uniprot,38 publicly rmsk,241 pull-down xenoRefGene,173 purpose simpleRepeat,32 put chainDm2,321 putative blastDm2FB,95 blastHg17KG,84 pwas geneid,87 q uniprot,1904 uniprot,1914 q99697 uniprot,1926 quality est,75 mrna,56 xenoMrna,60 queried ensGene,105 query blastDm2FB,124 blastDm2FB,136 blastHg17KG,113 blastHg17KG,125 rmsk,47 rmsk,61 uniprot,1484 xenoMrna,78 questions uniprot,1834 quickly mrna,341 xenoMrna,404 xenoRefGene,152 quite simpleRepeat,45 quot chainDm2,54 chainDm2,56 chainDm2,255 chainDm2,257 est,241 est,243 est,292 est,294 est,308 est,310 est,344 est,346 est,361 est,363 gc5Base,58 gc5Base,62 gold,255 gold,257 intronEst,316 intronEst,318 intronEst,356 intronEst,358 intronEst,372 intronEst,374 intronEst,408 intronEst,410 intronEst,425 intronEst,427 mrna,187 mrna,189 mrna,238 mrna,240 mrna,254 mrna,256 mrna,290 mrna,292 mrna,307 mrna,309 uniprot,63 uniprot,66 uniprot,261 uniprot,263 uniprot,272 uniprot,274 uniprot,283 uniprot,285 uniprot,412 uniprot,416 uniprot,423 uniprot,426 uniprot,431 uniprot,435 uniprot,437 uniprot,441 uniprot,468 uniprot,470 uniprot,471 uniprot,474 uniprot,475 uniprot,478 uniprot,572 uniprot,575 xenoMrna,261 xenoMrna,263 xenoMrna,301 xenoMrna,303 xenoMrna,317 xenoMrna,319 xenoMrna,353 xenoMrna,355 xenoMrna,370 xenoMrna,372 r augustusGene,291 chainDm2,501 chainDm2,547 geneid,161 geneid,184 netDm2,478 netDm2,524 r4 blastDm2FB,9 chainDm2,9 chainDm2,80 netDm2,9 netDm2,60 random augustusGene,119 est,574 intronEst,610 random-primed est,620 intronEst,656 raney blastDm2FB,212 blastHg17KG,203 uniprot,1960 range uniprot,1809 ranked netDm2,278 rather est,575 intronEst,611 ratio geneid,112 raw uniprot,1708 rc chainDm2,549 netDm2,526 rmsk,170 read est,473 intronEst,509 readme gold,173 scaffolds,176 reads gap,104 gold,60 scaffolds,63 rearrangement chainDm2,514 netDm2,45 netDm2,182 netDm2,491 reasonably est,541 est,564 intronEst,577 intronEst,600 recently uniprot,1186 record uniprot,496 xenoRefGene,67 reduced intronEst,100 refer ensGene,42 genscan,144 uniprot,1827 reference uniprot,1378 uniprot,1422 xenoRefGene,31 xenoRefGene,347 xenoRefGene,369 references augustusGene,285 chainDm2,479 ensGene,52 ensGene,167 est,746 geneid,154 genscan,152 genscan,179 intronEst,785 microsat,113 mrna,463 netDm2,474 rmsk,103 rmsk,303 simpleRepeat,73 uniprot,1984 xenoMrna,496 xenoRefGene,302 reflects rmsk,183 refseq uniprot,823 uniprot,828 uniprot,841 uniprot,845 uniprot,857 uniprot,864 uniprot,1002 uniprot,1010 uniprot,1055 uniprot,1207 uniprot,1236 uniprot,1276 uniprot,1290 xenoRefGene,2 xenoRefGene,5 xenoRefGene,34 xenoRefGene,66 xenoRefGene,300 xenoRefGene,342 xenoRefGene,371 regeneron uniprot,1968 region brhInparalog,57 netDm2,85 uniprot,312 regions augustusGene,76 chainDm2,101 genscan,48 microsat,14 netDm2,40 simpleRepeat,39 unipInterest,3 uniprot,240 uniprot,297 uniprot,300 uniprot,328 uniprot,348 uniprot,368 uniprot,384 regulaci geneid,39 related augustusGene,242 uniprot,551 relations brhInparalog,77 relationship est,96 intronEst,171 netDm2,344 relative gap,42 gold,225 netDm2,360 release uniprot,1589 releases uniprot,1561 uniprot,1686 relevant est,160 intronEst,235 mrna,106 uniprot,681 xenoMrna,180 remain uniprot,1189 remaining blastDm2FB,198 blastHg17KG,189 chainDm2,399 removed chainDm2,307 uniprot,597 uniprot,1150 reorganizing uniprot,1987 repbase rmsk,81 rmsk,93 rmsk,306 repeat microsat,83 rmsk,139 rmsk,146 rmsk,197 rmsk,223 rmsk,296 simpleRepeat,47 repeated uniprot,386 uniprot,390 repeating rmsk,2 repeatmasker chainDm2,437 netDm2,456 rmsk,1 rmsk,5 rmsk,19 rmsk,78 rmsk,220 rmsk,251 repeats chainDm2,428 microsat,6 microsat,9 microsat,35 microsat,58 microsat,63 microsat,86 microsat,93 microsat,106 microsat,117 netDm2,447 rmsk,8 rmsk,27 rmsk,41 rmsk,68 rmsk,85 rmsk,123 rmsk,150 rmsk,154 rmsk,156 rmsk,158 rmsk,166 rmsk,262 rmsk,269 simpleRepeat,2 simpleRepeat,5 simpleRepeat,10 simpleRepeat,17 simpleRepeat,20 simpleRepeat,24 simpleRepeat,34 simpleRepeat,77 unipRepeat,1 unipRepeat,3 uniprot,383 uniprot,440 repetitive rmsk,315 uniprot,1400 represent chainDm2,99 chainDm2,128 est,41 intronEst,52 netDm2,132 netDm2,137 represented gap,33 rmsk,49 representing gap,72 gold,63 scaffolds,66 reproducibility uniprot,1645 required blastDm2FB,200 requiring intronEst,88 res chainDm2,559 ensGene,197 est,764 est,789 est,809 geneid,189 intronEst,800 intronEst,816 microsat,127 mrna,481 mrna,506 mrna,526 netDm2,536 simpleRepeat,87 uniprot,1999 xenoMrna,511 xenoMrna,527 xenoRefGene,310 xenoRefGene,351 xenoRefGene,384 research rmsk,90 residues uniprot,344 resolve uniprot,1357 resolved uniprot,1284 resource uniprot,1995 uniprot,2033 rest ensGene,108 result brhInparalog,38 chainDm2,141 uniprot,798 uniprot,1065 uniprot,1170 resulting chainDm2,310 chainDm2,327 chainDm2,336 uniprot,874 uniprot,1137 uniprot,1308 results uniprot,1463 uniprot,1649 retained uniprot,795 retrieve est,583 intronEst,619 retroposons rmsk,144 reverse est,458 est,492 est,509 intronEst,494 intronEst,528 intronEst,545 review xenoRefGene,64 reviewed xenoRefGene,74 riestra uniprot,1972 rna est,104 est,452 geneid,29 geneid,148 intronEst,179 intronEst,488 rmsk,157 rmsk,160 xenoRefGene,30 xenoRefGene,242 xenoRefGene,288 rnas xenoRefGene,219 robert chainDm2,474 netDm2,469 roderic geneid,22 role uniprot,309 rolling rmsk,171 ross chainDm2,425 netDm2,444 rrna rmsk,162 running chainDm2,384 s augustusGene,104 augustusGene,221 augustusGene,319 blastDm2FB,145 blastHg17KG,134 chainDm2,509 chainDm2,526 chainDm2,539 geneid,25 genscan,190 genscan,194 genscan,210 gold,53 modelRefGene,21 modelRefGene,34 modelRefGene,40 netDm2,486 netDm2,503 netDm2,516 rmsk,18 rmsk,252 scaffolds,56 uniprot,751 uniprot,774 saccharomyces augustusGene,223 salzberg genscan,189 same gap,111 netDm2,211 netDm2,226 uniprot,608 uniprot,612 uniprot,641 uniprot,1173 xenoMrna,124 xenoMrna,129 sample augustusGene,133 sampling augustusGene,129 santa chainDm2,449 netDm2,419 satellite rmsk,155 sayers est,759 mrna,476 scaffolds gold,84 gold,91 gold,137 scaffolds,1 scaffolds,3 scaffolds,12 scaffolds,87 scaffolds,94 scaffolds,140 scheib uniprot,2012 school gold,30 gold,273 scaffolds,33 scaffolds,188 schwartz chainDm2,416 chainDm2,538 netDm2,435 netDm2,515 sci chainDm2,524 netDm2,501 science genscan,203 scientific uniprot,37 scientists est,744 intronEst,783 mrna,461 xenoMrna,494 xenoRefGene,293 score uniprot,950 uniprot,1116 uniprot,1317 uniprot,1349 uniprot,1491 scored geneid,79 geneid,97 scores geneid,103 geneid,137 uniprot,1085 scoring chainDm2,28 chainDm2,38 chainDm2,376 chainDm2,392 chainDm2,486 scott chainDm2,415 netDm2,434 screens rmsk,22 script uniprot,1549 scrna rmsk,164 search blastDm2FB,180 blastHg17KG,169 searls genscan,191 second xenoMrna,93 secondary unipStruct,5 uniprot,361 secreted uniprot,247 section ensGene,53 genscan,153 rmsk,104 uniprot,897 sections netDm2,301 see augustusGene,42 blastDm2FB,166 blastHg17KG,155 ensGene,25 ensGene,161 genscan,57 gold,169 intronEst,118 microsat,101 modelRefGene,26 rmsk,278 scaffolds,172 simpleRepeat,63 uniprot,188 uniprot,526 uniprot,768 uniprot,894 xenoRefGene,209 select genscan,90 xenoRefGene,162 selected est,296 est,312 est,365 intronEst,360 intronEst,376 intronEst,429 mrna,242 mrna,258 mrna,311 uniprot,986 xenoMrna,305 xenoMrna,321 xenoMrna,374 selecting microsat,60 semi-markov augustusGene,117 sep chainDm2,529 netDm2,506 rmsk,320 separated est,267 mrna,213 seq unipConflict,1 sequence augustusGene,32 augustusGene,70 blastDm2FB,46 blastDm2FB,88 blastHg17KG,77 brhInparalog,33 brhInparalog,47 brhInparalog,65 chainDm2,73 chainDm2,135 chainDm2,489 est,21 est,92 est,401 est,410 est,584 est,722 est,734 est,741 gap,103 geneid,82 gold,68 gold,96 gold,194 intronEst,22 intronEst,167 intronEst,465 intronEst,474 intronEst,620 intronEst,758 intronEst,773 intronEst,780 mrna,347 mrna,438 mrna,451 mrna,458 netDm2,49 rmsk,48 rmsk,62 scaffolds,71 scaffolds,99 unipConflict,4 uniprot,356 uniprot,372 uniprot,381 uniprot,387 uniprot,636 uniprot,967 uniprot,971 uniprot,1134 uniprot,1219 uniprot,1242 uniprot,1379 uniprot,2035 xenoMrna,79 xenoMrna,103 xenoMrna,111 xenoMrna,410 xenoMrna,471 xenoMrna,484 xenoMrna,491 xenoRefGene,277 xenoRefGene,289 xenoRefGene,370 xenoRefGene,375 sequences blastDm2FB,76 blastHg17KG,65 est,32 est,603 est,611 geneid,60 intronEst,43 intronEst,639 intronEst,647 microsat,26 microsat,124 modelRefGene,52 rmsk,24 rmsk,32 simpleRepeat,84 uniprot,16 uniprot,85 uniprot,112 uniprot,114 uniprot,131 uniprot,138 uniprot,166 uniprot,195 uniprot,197 uniprot,377 uniprot,673 uniprot,781 uniprot,1103 uniprot,1374 uniprot,1424 uniprot,1608 uniprot,1611 uniprot,1889 xenoMrna,116 xenoRefGene,32 xenoRefGene,348 sequencing gap,6 gc5Base,10 gold,7 gold,26 gold,45 gold,269 netDm2,383 scaffolds,6 scaffolds,29 scaffolds,48 scaffolds,184 server ensGene,144 uniprot,1699 uniprot,1745 servers ensGene,116 set blastDm2FB,160 blastHg17KG,149 gap,100 geneid,123 uniprot,838 uniprot,858 uniprot,1287 uniprot,1597 sets augustusGene,158 several est,426 mrna,365 sf blastDm2FB,168 blastHg17KG,157 shaded est,70 mrna,51 xenoMrna,55 shading intronEst,143 rmsk,178 rmsk,209 xenoRefGene,59 short rmsk,124 uniprot,460 uniprot,978 shotgun gold,42 gold,260 scaffolds,45 should est,332 est,636 intronEst,396 intronEst,672 mrna,278 xenoMrna,341 show intronEst,31 intronEst,64 uniprot,80 uniprot,227 uniprot,538 xenoRefGene,125 shown est,150 gold,216 intronEst,225 microsat,48 mrna,96 uniprot,504 uniprot,628 uniprot,646 uniprot,1580 uniprot,1631 xenoMrna,170 shows augustusGene,15 augustusGene,108 brhInparalog,14 chainDm2,18 est,15 gc5Base,16 geneid,13 genscan,13 gold,11 intronEst,16 modelRefGene,16 mrna,16 netDm2,18 scaffolds,10 uniprot,14 uniprot,484 xenoRefGene,14 side est,599 gap,51 intronEst,635 signal augustusGene,48 augustusGene,63 unipLocSignal,1 unipLocSignal,4 uniprot,238 uniprot,476 uniprot,511 uniprot,564 signals genscan,34 genscan,187 signs intronEst,32 similar brhInparalog,61 uniprot,1403 simple microsat,57 microsat,85 rmsk,149 simpleRepeat,1 simpleRepeat,3 simpleRepeat,15 simultaneously chainDm2,52 since chainDm2,299 uniprot,1383 sine rmsk,128 single blastDm2FB,113 blastHg17KG,102 chainDm2,93 chainDm2,102 chainDm2,348 chainDm2,353 est,633 est,686 gold,101 intronEst,669 intronEst,722 mrna,402 scaffolds,104 uniprot,141 xenoMrna,434 xenoRefGene,241 single-lined chainDm2,176 single-read est,31 intronEst,42 site genscan,157 sites augustusGene,54 augustusGene,59 geneid,71 geneid,94 geneid,107 uniprot,342 uniprot,354 uniprot,578 uniprot,585 size blastDm2FB,107 blastHg17KG,96 gold,122 gold,134 scaffolds,125 scaffolds,137 skepticism est,641 intronEst,677 sm xenoRefGene,325 smit chainDm2,433 chainDm2,542 netDm2,452 netDm2,519 rmsk,17 rmsk,288 smith-waterman brhInparalog,89 snrna rmsk,163 so netDm2,124 uniprot,1135 uniprot,1430 soft-masked rmsk,264 software rmsk,221 some est,158 est,555 est,571 est,674 gold,90 intronEst,233 intronEst,591 intronEst,607 intronEst,710 mrna,104 scaffolds,93 uniprot,318 xenoMrna,178 sometimes simpleRepeat,50 uniprot,983 sorted netDm2,270 uniprot,556 source uniprot,820 uniprot,1545 uniprot,1774 uniprot,1788 space est,270 mrna,216 uniprot,1990 spaces gold,214 spain geneid,48 span gold,154 netDm2,83 scaffolds,157 specialized simpleRepeat,29 species augustusGene,166 augustusGene,173 augustusGene,181 augustusGene,186 augustusGene,200 augustusGene,229 augustusGene,244 brhInparalog,84 chainDm2,69 chainDm2,138 chainDm2,157 netDm2,389 species-specific augustusGene,156 specific est,197 intronEst,272 mrna,143 simpleRepeat,53 xenoMrna,217 splice augustusGene,53 geneid,70 genscan,156 uniprot,144 spliced intronEst,1 intronEst,9 intronEst,60 splicing augustusGene,123 genscan,33 genscan,186 intronEst,34 intronEst,89 split chainDm2,305 staff uniprot,42 uniprot,1965 stage uniprot,1228 stanke augustusGene,103 augustusGene,251 augustusGene,284 augustusGene,286 augustusGene,316 start augustusGene,58 est,563 geneid,72 intronEst,599 uniprot,125 uniprot,209 uniprot,1821 state chainDm2,410 netDm2,429 statistical augustusGene,47 stdout uniprot,1825 stefanie augustusGene,267 step geneid,69 uniprot,901 uniprot,1155 uniprot,1330 stop geneid,74 storage chainDm2,467 netDm2,462 stored uniprot,1733 strand chainDm2,212 est,77 intronEst,152 xenoMrna,62 strands uniprot,365 strategy uniprot,1120 uniprot,1193 structure augustusGene,113 geneid,65 geneid,129 modelRefGene,48 unipStruct,1 unipStruct,6 uniprot,362 uniprot,2037 structures augustusGene,164 genscan,215 studying netDm2,43 subcellular uniprot,553 submitted est,736 intronEst,775 mrna,453 xenoMrna,486 submodel augustusGene,331 subsections chainDm2,369 subset est,136 intronEst,211 microsat,54 mrna,82 xenoMrna,156 substantial chainDm2,134 subtrack uniprot,411 subtracks uniprot,59 uniprot,72 uniprot,520 uniprot,548 successful est,593 intronEst,629 such netDm2,350 uniprot,306 suffix uniprot,1255 suitable uniprot,1868 sum geneid,100 geneid,134 suppl augustusGene,336 sure uniprot,1407 swiss-prot uniprot,2025 swissprot unipAliSwissprot,1 unipAliSwissprot,6 uniprot,3 uniprot,24 uniprot,31 uniprot,76 uniprot,109 uniprot,116 uniprot,127 uniprot,414 uniprot,454 uniprot,495 uniprot,623 uniprot,703 uniprot,1373 symp chainDm2,492 syn netDm2,207 syntenic netDm2,357 syntenically augustusGene,297 system chainDm2,29 uniprot,1353 uniprot,1784 systems chainDm2,39 t ensGene,169 ensGene,181 ensGene,187 xenoRefGene,365 table augustusGene,225 ensGene,66 est,222 est,225 est,244 intronEst,297 intronEst,300 intronEst,319 mrna,168 mrna,171 mrna,190 uniprot,1720 xenoMrna,242 xenoMrna,245 xenoMrna,264 tables uniprot,1301 tags est,22 intronEst,23 tail est,504 intronEst,540 taken est,475 intronEst,511 xenoRefGene,26 tandem microsat,92 microsat,105 microsat,116 simpleRepeat,4 simpleRepeat,16 simpleRepeat,23 simpleRepeat,76 task est,164 intronEst,239 mrna,110 xenoMrna,184 tatusova xenoRefGene,364 tblastn blastDm2FB,20 blastDm2FB,91 blastDm2FB,152 blastHg17KG,9 blastHg17KG,18 blastHg17KG,80 blastHg17KG,141 brhInparalog,53 uniprot,1476 techniques est,569 intronEst,605 temperature augustusGene,141 ten rmsk,119 tend microsat,37 term est,171 intronEst,246 mrna,117 xenoMrna,191 terminal rmsk,138 terms est,215 est,261 intronEst,290 mrna,161 mrna,207 xenoMrna,235 text est,178 est,218 est,258 intronEst,253 intronEst,293 intronEst,333 mrna,124 mrna,164 mrna,204 uniprot,1763 xenoMrna,198 xenoMrna,238 xenoMrna,278 than blastDm2FB,120 blastHg17KG,109 chainDm2,34 est,283 est,576 intronEst,347 intronEst,612 mrna,229 netDm2,196 rmsk,237 xenoMrna,28 xenoMrna,292 xenoRefGene,23 xenoRefGene,235 thank ensGene,150 thanks augustusGene,248 brhInparalog,92 geneid,143 genscan,170 gold,264 modelRefGene,61 rmsk,285 scaffolds,179 uniprot,1974 that blastDm2FB,77 blastDm2FB,130 blastHg17KG,66 blastHg17KG,119 chainDm2,30 chainDm2,106 chainDm2,132 chainDm2,282 chainDm2,295 est,39 est,66 est,120 est,227 est,251 est,299 est,314 est,331 est,355 est,373 est,390 est,405 est,659 est,680 genscan,141 gold,103 gold,109 intronEst,6 intronEst,30 intronEst,50 intronEst,74 intronEst,195 intronEst,302 intronEst,326 intronEst,363 intronEst,378 intronEst,395 intronEst,419 intronEst,437 intronEst,454 intronEst,469 intronEst,695 intronEst,716 microsat,15 mrna,47 mrna,66 mrna,173 mrna,197 mrna,245 mrna,260 mrna,277 mrna,301 mrna,319 mrna,336 netDm2,82 netDm2,104 netDm2,320 netDm2,331 rmsk,42 rmsk,231 rmsk,239 scaffolds,106 scaffolds,112 uniprot,167 uniprot,301 uniprot,696 uniprot,734 uniprot,745 uniprot,999 uniprot,1012 uniprot,1169 uniprot,1408 uniprot,1602 uniprot,1624 uniprot,1738 uniprot,1866 xenoMrna,51 xenoMrna,140 xenoMrna,247 xenoMrna,271 xenoMrna,308 xenoMrna,323 xenoMrna,340 xenoMrna,364 xenoMrna,382 xenoMrna,399 xenoRefGene,148 the augustusGene,20 augustusGene,25 augustusGene,30 augustusGene,38 augustusGene,61 augustusGene,69 augustusGene,81 augustusGene,109 augustusGene,143 augustusGene,165 augustusGene,172 augustusGene,177 augustusGene,185 augustusGene,240 augustusGene,250 augustusGene,255 augustusGene,258 augustusGene,261 augustusGene,272 augustusGene,275 blastDm2FB,23 blastDm2FB,26 blastDm2FB,33 blastDm2FB,43 blastDm2FB,52 blastDm2FB,60 blastDm2FB,65 blastDm2FB,73 blastDm2FB,85 blastDm2FB,90 blastDm2FB,94 blastDm2FB,112 blastDm2FB,123 blastDm2FB,135 blastDm2FB,143 blastDm2FB,156 blastDm2FB,197 blastHg17KG,21 blastHg17KG,24 blastHg17KG,31 blastHg17KG,38 blastHg17KG,42 blastHg17KG,50 blastHg17KG,54 blastHg17KG,62 blastHg17KG,74 blastHg17KG,79 blastHg17KG,83 blastHg17KG,101 blastHg17KG,112 blastHg17KG,124 blastHg17KG,132 blastHg17KG,145 blastHg17KG,188 brhInparalog,30 brhInparalog,43 brhInparalog,58 brhInparalog,63 chainDm2,70 chainDm2,76 chainDm2,84 chainDm2,97 chainDm2,114 chainDm2,122 chainDm2,170 chainDm2,199 chainDm2,205 chainDm2,210 chainDm2,218 chainDm2,230 chainDm2,245 chainDm2,251 chainDm2,254 chainDm2,269 chainDm2,275 chainDm2,279 chainDm2,300 chainDm2,309 chainDm2,317 chainDm2,324 chainDm2,326 chainDm2,335 chainDm2,344 chainDm2,367 chainDm2,372 chainDm2,389 chainDm2,398 chainDm2,438 chainDm2,444 chainDm2,462 chainDm2,469 chainDm2,516 ensGene,21 ensGene,34 ensGene,51 ensGene,65 ensGene,69 ensGene,75 ensGene,101 ensGene,107 ensGene,190 est,27 est,53 est,64 est,76 est,80 est,83 est,86 est,89 est,98 est,103 est,111 est,126 est,130 est,140 est,152 est,162 est,167 est,177 est,182 est,189 est,200 est,203 est,206 est,211 est,221 est,224 est,230 est,240 est,247 est,256 est,277 est,287 est,319 est,326 est,340 est,349 est,357 est,366 est,375 est,392 est,399 est,408 est,419 est,440 est,463 est,477 est,491 est,502 est,508 est,518 est,522 est,533 est,537 est,544 est,553 est,557 est,567 est,587 est,613 est,619 est,654 est,660 est,692 est,695 est,711 est,720 est,738 est,804 gap,13 gap,18 gap,28 gap,41 gap,47 gap,53 gap,69 gap,73 gap,78 gap,87 gap,110 gc5Base,12 gc5Base,17 gc5Base,53 gc5Base,57 gc5Base,68 gc5Base,72 geneid,17 geneid,36 geneid,67 geneid,81 geneid,93 geneid,99 geneid,102 geneid,105 geneid,109 geneid,110 geneid,122 geneid,127 geneid,133 geneid,136 geneid,139 genscan,16 genscan,23 genscan,38 genscan,53 genscan,68 genscan,75 genscan,80 genscan,91 genscan,115 genscan,135 genscan,139 genscan,151 genscan,155 genscan,176 gold,12 gold,17 gold,23 gold,74 gold,78 gold,120 gold,124 gold,132 gold,136 gold,141 gold,146 gold,152 gold,156 gold,170 gold,180 gold,183 gold,186 gold,192 gold,200 gold,212 gold,218 gold,224 gold,230 gold,233 gold,244 gold,266 intronEst,28 intronEst,38 intronEst,90 intronEst,95 intronEst,102 intronEst,119 intronEst,131 intronEst,151 intronEst,155 intronEst,158 intronEst,161 intronEst,164 intronEst,173 intronEst,178 intronEst,186 intronEst,201 intronEst,205 intronEst,215 intronEst,227 intronEst,237 intronEst,242 intronEst,252 intronEst,257 intronEst,264 intronEst,275 intronEst,278 intronEst,281 intronEst,286 intronEst,296 intronEst,299 intronEst,305 intronEst,315 intronEst,322 intronEst,331 intronEst,341 intronEst,351 intronEst,383 intronEst,390 intronEst,404 intronEst,413 intronEst,421 intronEst,430 intronEst,439 intronEst,456 intronEst,463 intronEst,472 intronEst,499 intronEst,513 intronEst,527 intronEst,538 intronEst,544 intronEst,554 intronEst,558 intronEst,569 intronEst,573 intronEst,580 intronEst,589 intronEst,593 intronEst,603 intronEst,623 intronEst,649 intronEst,655 intronEst,690 intronEst,696 intronEst,728 intronEst,731 intronEst,747 intronEst,756 intronEst,777 intronEst,811 microsat,43 microsat,46 microsat,56 microsat,82 microsat,84 microsat,91 modelRefGene,11 modelRefGene,46 mrna,13 mrna,25 mrna,34 mrna,45 mrna,57 mrna,72 mrna,76 mrna,86 mrna,98 mrna,108 mrna,113 mrna,123 mrna,128 mrna,135 mrna,146 mrna,149 mrna,152 mrna,157 mrna,167 mrna,170 mrna,176 mrna,186 mrna,193 mrna,202 mrna,223 mrna,233 mrna,265 mrna,272 mrna,286 mrna,295 mrna,303 mrna,312 mrna,321 mrna,338 mrna,345 mrna,356 mrna,379 mrna,394 mrna,397 mrna,408 mrna,411 mrna,427 mrna,436 mrna,442 mrna,455 mrna,521 netDm2,19 netDm2,30 netDm2,46 netDm2,56 netDm2,72 netDm2,78 netDm2,92 netDm2,110 netDm2,127 netDm2,130 netDm2,135 netDm2,148 netDm2,161 netDm2,163 netDm2,170 netDm2,173 netDm2,180 netDm2,186 netDm2,199 netDm2,210 netDm2,214 netDm2,217 netDm2,225 netDm2,229 netDm2,235 netDm2,246 netDm2,249 netDm2,260 netDm2,264 netDm2,272 netDm2,276 netDm2,280 netDm2,288 netDm2,333 netDm2,343 netDm2,362 netDm2,365 netDm2,377 netDm2,401 netDm2,406 netDm2,415 netDm2,457 netDm2,464 netDm2,493 rmsk,33 rmsk,40 rmsk,46 rmsk,60 rmsk,66 rmsk,75 rmsk,80 rmsk,87 rmsk,102 rmsk,174 rmsk,180 rmsk,184 rmsk,199 rmsk,201 rmsk,206 rmsk,208 rmsk,214 rmsk,219 rmsk,244 rmsk,250 rmsk,279 rmsk,293 scaffolds,11 scaffolds,15 scaffolds,20 scaffolds,26 scaffolds,77 scaffolds,81 scaffolds,123 scaffolds,127 scaffolds,135 scaffolds,139 scaffolds,144 scaffolds,149 scaffolds,155 scaffolds,159 scaffolds,173 scaffolds,181 simpleRepeat,60 uniprot,22 uniprot,40 uniprot,53 uniprot,69 uniprot,81 uniprot,87 uniprot,94 uniprot,102 uniprot,119 uniprot,184 uniprot,202 uniprot,215 uniprot,233 uniprot,259 uniprot,270 uniprot,281 uniprot,308 uniprot,379 uniprot,410 uniprot,421 uniprot,428 uniprot,444 uniprot,463 uniprot,485 uniprot,493 uniprot,510 uniprot,527 uniprot,534 uniprot,539 uniprot,543 uniprot,547 uniprot,562 uniprot,571 uniprot,607 uniprot,640 uniprot,649 uniprot,668 uniprot,698 uniprot,748 uniprot,785 uniprot,789 uniprot,791 uniprot,797 uniprot,802 uniprot,810 uniprot,812 uniprot,819 uniprot,832 uniprot,836 uniprot,855 uniprot,873 uniprot,883 uniprot,903 uniprot,913 uniprot,923 uniprot,927 uniprot,935 uniprot,944 uniprot,947 uniprot,953 uniprot,961 uniprot,969 uniprot,1009 uniprot,1036 uniprot,1039 uniprot,1054 uniprot,1090 uniprot,1112 uniprot,1126 uniprot,1136 uniprot,1140 uniprot,1156 uniprot,1172 uniprot,1212 uniprot,1221 uniprot,1243 uniprot,1253 uniprot,1267 uniprot,1273 uniprot,1278 uniprot,1294 uniprot,1303 uniprot,1307 uniprot,1321 uniprot,1332 uniprot,1339 uniprot,1358 uniprot,1372 uniprot,1376 uniprot,1384 uniprot,1388 uniprot,1409 uniprot,1414 uniprot,1428 uniprot,1431 uniprot,1462 uniprot,1508 uniprot,1512 uniprot,1519 uniprot,1522 uniprot,1527 uniprot,1535 uniprot,1547 uniprot,1574 uniprot,1582 uniprot,1588 uniprot,1592 uniprot,1595 uniprot,1606 uniprot,1609 uniprot,1612 uniprot,1618 uniprot,1621 uniprot,1628 uniprot,1640 uniprot,1664 uniprot,1667 uniprot,1678 uniprot,1681 uniprot,1701 uniprot,1707 uniprot,1711 uniprot,1719 uniprot,1723 uniprot,1729 uniprot,1743 uniprot,1746 uniprot,1753 uniprot,1773 uniprot,1796 uniprot,1857 uniprot,1861 uniprot,1893 uniprot,1963 uniprot,1988 uniprot,1992 uniprot,2024 uniprot,2029 xenoMrna,38 xenoMrna,49 xenoMrna,61 xenoMrna,71 xenoMrna,74 xenoMrna,77 xenoMrna,84 xenoMrna,92 xenoMrna,96 xenoMrna,99 xenoMrna,105 xenoMrna,123 xenoMrna,128 xenoMrna,131 xenoMrna,146 xenoMrna,150 xenoMrna,160 xenoMrna,172 xenoMrna,182 xenoMrna,187 xenoMrna,197 xenoMrna,202 xenoMrna,209 xenoMrna,220 xenoMrna,223 xenoMrna,226 xenoMrna,231 xenoMrna,241 xenoMrna,244 xenoMrna,250 xenoMrna,260 xenoMrna,267 xenoMrna,276 xenoMrna,286 xenoMrna,296 xenoMrna,328 xenoMrna,335 xenoMrna,349 xenoMrna,358 xenoMrna,366 xenoMrna,375 xenoMrna,384 xenoMrna,401 xenoMrna,408 xenoMrna,420 xenoMrna,425 xenoMrna,440 xenoMrna,443 xenoMrna,460 xenoMrna,469 xenoMrna,475 xenoMrna,488 xenoMrna,522 xenoRefGene,28 xenoRefGene,35 xenoRefGene,50 xenoRefGene,57 xenoRefGene,61 xenoRefGene,65 xenoRefGene,76 xenoRefGene,91 xenoRefGene,94 xenoRefGene,97 xenoRefGene,111 xenoRefGene,117 xenoRefGene,122 xenoRefGene,127 xenoRefGene,135 xenoRefGene,163 xenoRefGene,168 xenoRefGene,183 xenoRefGene,198 xenoRefGene,211 xenoRefGene,218 xenoRefGene,223 xenoRefGene,247 xenoRefGene,250 xenoRefGene,266 xenoRefGene,275 xenoRefGene,298 their uniprot,62 uniprot,723 uniprot,1101 them netDm2,295 rmsk,277 uniprot,20 uniprot,173 uniprot,483 then chainDm2,320 netDm2,284 netDm2,369 uniprot,1083 uniprot,1516 there chainDm2,161 est,622 intronEst,658 uniprot,705 uniprot,1092 xenoMrna,117 therefore uniprot,968 uniprot,1145 these augustusGene,95 augustusGene,190 brhInparalog,35 brhInparalog,100 chainDm2,53 chainDm2,379 ensGene,10 ensGene,154 est,590 gap,15 geneid,152 gold,278 intronEst,626 microsat,24 modelRefGene,66 netDm2,97 rmsk,205 rmsk,228 rmsk,232 scaffolds,193 simpleRepeat,33 uniprot,99 uniprot,130 uniprot,1160 they chainDm2,241 uniprot,179 thibaud-nissen xenoRefGene,326 this augustusGene,13 augustusGene,106 augustusGene,224 blastDm2FB,17 blastDm2FB,203 blastHg17KG,15 blastHg17KG,194 brhInparalog,12 chainDm2,16 chainDm2,139 ensGene,119 ensGene,135 est,13 est,50 est,115 est,142 est,378 est,415 est,595 est,631 est,644 est,726 gap,8 gap,38 gap,75 gap,94 gc5Base,38 gc5Base,77 geneid,11 genscan,11 genscan,65 genscan,128 gold,9 gold,127 gold,167 gold,177 gold,249 intronEst,14 intronEst,128 intronEst,190 intronEst,217 intronEst,442 intronEst,479 intronEst,631 intronEst,667 intronEst,680 intronEst,762 intronEst,765 microsat,11 microsat,50 microsat,99 modelRefGene,27 mrna,31 mrna,61 mrna,88 mrna,324 mrna,352 netDm2,16 netDm2,52 netDm2,84 netDm2,310 rmsk,10 rmsk,51 rmsk,114 rmsk,301 scaffolds,8 scaffolds,130 scaffolds,170 simpleRepeat,12 simpleRepeat,31 uniprot,12 uniprot,134 uniprot,149 uniprot,218 uniprot,220 uniprot,653 uniprot,663 uniprot,871 uniprot,878 uniprot,1018 uniprot,1058 uniprot,1063 uniprot,1248 uniprot,1259 uniprot,1352 uniprot,1447 uniprot,1530 uniprot,1553 uniprot,1562 uniprot,1657 uniprot,1674 uniprot,1688 uniprot,1939 xenoMrna,12 xenoMrna,35 xenoMrna,65 xenoMrna,135 xenoMrna,162 xenoMrna,387 xenoMrna,415 xenoRefGene,12 xenoRefGene,38 xenoRefGene,47 xenoRefGene,85 xenoRefGene,140 xenoRefGene,179 xenoRefGene,215 xenoRefGene,281 those est,371 est,404 intronEst,435 intronEst,468 microsat,62 mrna,317 rmsk,238 uniprot,729 xenoMrna,380 xenoMrna,450 xenoRefGene,229 thousands chainDm2,216 three uniprot,1227 three-step uniprot,989 threshold chainDm2,395 through gap,68 gold,182 rmsk,268 uniprot,98 uniprot,133 uniprot,633 uniprot,804 uniprot,1521 xenoRefGene,90 time netDm2,293 tissue est,207 est,242 est,257 intronEst,282 intronEst,317 intronEst,332 mrna,153 mrna,188 mrna,203 xenoMrna,227 xenoMrna,262 xenoMrna,277 tissues est,250 intronEst,325 mrna,196 xenoMrna,270 to augustusGene,115 augustusGene,170 augustusGene,249 augustusGene,301 blastDm2FB,42 blastDm2FB,68 blastDm2FB,201 blastHg17KG,57 blastHg17KG,192 brhInparalog,62 brhInparalog,93 chainDm2,110 chainDm2,181 chainDm2,193 chainDm2,232 chainDm2,243 chainDm2,248 chainDm2,260 chainDm2,266 chainDm2,289 ensGene,43 ensGene,149 est,97 est,124 est,161 est,165 est,180 est,187 est,191 est,209 est,229 est,236 est,335 est,384 est,394 est,418 est,439 est,448 est,517 est,582 est,642 est,737 gc5Base,48 geneid,54 geneid,144 geneid,164 genscan,95 genscan,105 genscan,114 genscan,145 genscan,171 gold,190 gold,242 gold,265 intronEst,57 intronEst,172 intronEst,199 intronEst,236 intronEst,240 intronEst,255 intronEst,262 intronEst,266 intronEst,284 intronEst,304 intronEst,311 intronEst,399 intronEst,448 intronEst,458 intronEst,484 intronEst,553 intronEst,618 intronEst,678 intronEst,776 microsat,18 microsat,38 microsat,121 modelRefGene,53 modelRefGene,62 mrna,70 mrna,107 mrna,111 mrna,126 mrna,133 mrna,137 mrna,155 mrna,175 mrna,182 mrna,281 mrna,330 mrna,340 mrna,355 mrna,378 mrna,454 netDm2,143 netDm2,157 netDm2,241 netDm2,286 netDm2,298 netDm2,338 netDm2,361 netDm2,371 rmsk,118 rmsk,226 rmsk,274 rmsk,286 rmsk,299 scaffolds,180 simpleRepeat,81 unipAliSwissprot,8 unipAliTrembl,8 uniprot,27 uniprot,86 uniprot,101 uniprot,118 uniprot,201 uniprot,214 uniprot,226 uniprot,245 uniprot,492 uniprot,525 uniprot,552 uniprot,559 uniprot,658 uniprot,682 uniprot,764 uniprot,784 uniprot,801 uniprot,849 uniprot,917 uniprot,920 uniprot,955 uniprot,974 uniprot,1008 uniprot,1088 uniprot,1196 uniprot,1215 uniprot,1220 uniprot,1247 uniprot,1285 uniprot,1336 uniprot,1356 uniprot,1369 uniprot,1405 uniprot,1413 uniprot,1460 uniprot,1473 uniprot,1478 uniprot,1493 uniprot,1518 uniprot,1551 uniprot,1676 uniprot,1761 uniprot,1802 uniprot,1828 uniprot,1846 uniprot,1851 uniprot,1856 uniprot,1884 uniprot,1890 uniprot,1975 xenoMrna,89 xenoMrna,144 xenoMrna,181 xenoMrna,185 xenoMrna,200 xenoMrna,207 xenoMrna,211 xenoMrna,229 xenoMrna,249 xenoMrna,256 xenoMrna,344 xenoMrna,393 xenoMrna,403 xenoMrna,487 xenoRefGene,115 xenoRefGene,151 xenoRefGene,158 xenoRefGene,182 xenoRefGene,208 together blastDm2FB,101 blastHg17KG,90 chainDm2,90 tolerate chainDm2,43 tolerated uniprot,1257 tool blastDm2FB,159 blastDm2FB,181 blastHg17KG,148 blastHg17KG,170 est,807 intronEst,814 mrna,524 uniprot,1766 uniprot,1797 xenoMrna,525 xenoRefGene,308 tools rmsk,294 uniprot,1873 top netDm2,198 uniprot,1304 uniprot,1340 uniprot,1489 xenoRefGene,95 top-level netDm2,73 netDm2,93 top-scoring uniprot,792 topological uniprot,330 total gold,142 gold,153 scaffolds,145 scaffolds,156 track augustusGene,14 augustusGene,107 blastDm2FB,18 blastDm2FB,56 blastDm2FB,204 blastHg17KG,16 blastHg17KG,35 blastHg17KG,46 blastHg17KG,195 brhInparalog,13 chainDm2,17 chainDm2,86 chainDm2,262 ensGene,136 est,14 est,51 est,116 est,141 est,153 est,379 est,645 est,727 gap,9 gap,39 gc5Base,15 gc5Base,39 geneid,12 genscan,12 genscan,66 genscan,76 genscan,87 gold,10 gold,178 gold,250 intronEst,15 intronEst,123 intronEst,129 intronEst,191 intronEst,216 intronEst,228 intronEst,443 intronEst,681 intronEst,763 intronEst,766 microsat,12 microsat,51 microsat,59 microsat,87 modelRefGene,15 mrna,15 mrna,32 mrna,62 mrna,87 mrna,99 mrna,325 mrna,444 netDm2,17 rmsk,11 rmsk,52 rmsk,115 rmsk,302 scaffolds,9 simpleRepeat,13 uniprot,13 uniprot,104 uniprot,150 uniprot,219 uniprot,221 uniprot,234 uniprot,422 uniprot,429 uniprot,576 uniprot,654 uniprot,710 uniprot,1004 uniprot,1208 uniprot,1277 uniprot,1554 uniprot,1563 uniprot,1583 uniprot,1658 uniprot,1671 uniprot,1689 uniprot,1713 uniprot,1754 uniprot,1940 xenoMrna,13 xenoMrna,36 xenoMrna,66 xenoMrna,136 xenoMrna,161 xenoMrna,173 xenoMrna,388 xenoMrna,477 xenoRefGene,13 xenoRefGene,39 xenoRefGene,48 xenoRefGene,86 xenoRefGene,98 xenoRefGene,141 xenoRefGene,170 xenoRefGene,282 tracks augustusGene,41 ensGene,24 est,59 est,424 genscan,56 genscan,74 intronEst,137 mrna,40 mrna,363 netDm2,266 uniprot,91 uniprot,123 uniprot,206 uniprot,409 uniprot,1643 xenoMrna,44 xenoRefGene,56 traditional chainDm2,35 trained augustusGene,150 training augustusGene,162 augustusGene,176 augustusGene,180 augustusGene,199 augustusGene,228 augustusGene,243 augustusGene,259 augustusGene,273 transcribed est,44 est,459 intronEst,55 intronEst,495 transcript est,554 intronEst,590 uniprot,837 uniprot,908 uniprot,918 uniprot,945 uniprot,963 uniprot,1003 uniprot,1076 uniprot,1223 uniprot,1237 uniprot,1249 uniprot,1263 uniprot,1268 uniprot,1291 uniprot,1325 uniprot,1596 uniprot,1610 uniprot,1623 transcript-genome uniprot,813 uniprot,1619 transcript-to-genome uniprot,806 transcriptase est,510 intronEst,546 transcription est,101 est,493 est,540 est,562 intronEst,176 intronEst,529 intronEst,576 intronEst,598 transcriptional genscan,28 transcripts augustusGene,124 modelRefGene,18 uniprot,786 uniprot,833 uniprot,928 uniprot,936 uniprot,957 uniprot,985 uniprot,992 uniprot,1011 uniprot,1022 uniprot,1032 uniprot,1056 uniprot,1069 uniprot,1091 uniprot,1096 uniprot,1108 uniprot,1127 uniprot,1168 uniprot,1338 uniprot,1474 xenoRefGene,379 translated xenoMrna,15 xenoMrna,81 xenoMrna,101 xenoMrna,430 translation augustusGene,57 translational genscan,29 transmembrane unipLocTransMemb,1 unipLocTransMemb,3 uniprot,265 uniprot,273 uniprot,515 uniprot,567 transposons chainDm2,294 chainDm2,318 netDm2,396 trembl unipAliTrembl,1 unipAliTrembl,6 uniprot,4 uniprot,44 uniprot,79 uniprot,185 uniprot,192 uniprot,199 uniprot,211 uniprot,500 uniprot,604 uniprot,661 trends rmsk,317 trf simpleRepeat,7 simpleRepeat,26 simpleRepeat,61 simpleRepeat,67 tri-nucleotide microsat,5 microsat,34 tried uniprot,869 trimming netDm2,294 trna rmsk,161 true augustusGene,132 turn chainDm2,249 xenoRefGene,133 turns uniprot,370 two gold,234 netDm2,402 uniprot,71 uniprot,630 uniprot,1641 xenoMrna,69 xenoMrna,106 type est,169 est,199 gold,254 intronEst,244 intronEst,274 mrna,115 mrna,145 uniprot,65 uniprot,271 uniprot,464 uniprot,614 xenoMrna,189 xenoMrna,219 types augustusGene,89 est,248 est,427 gap,81 intronEst,323 mrna,194 mrna,366 netDm2,194 uniprot,676 xenoMrna,268 typically est,33 est,462 gc5Base,33 intronEst,44 intronEst,498 u chainDm2,525 netDm2,502 ucsc est,731 intronEst,770 mrna,448 rmsk,211 unipAliSwissprot,3 unipAliTrembl,3 uniprot,107 uniprot,190 uniprot,773 uniprot,826 uniprot,827 uniprot,844 uniprot,1206 uniprot,1275 uniprot,1668 uniprot,1947 xenoMrna,481 xenoRefGene,286 unannotated modelRefGene,58 undergone xenoRefGene,69 underlies genscan,142 underlying uniprot,1682 xenoRefGene,37 underneath netDm2,330 unexpected uniprot,766 ungapped netDm2,133 uniprot unipChain,2 unipConflict,3 unipDisulfBond,3 unipDomain,2 unipInterest,2 unipLocCytopl,2 unipLocExtra,2 unipLocSignal,3 unipLocTransMemb,2 unipModif,3 unipMut,2 unipOther,3 unipRepeat,2 unipStruct,2 uniprot,1 uniprot,2 uniprot,23 uniprot,30 uniprot,41 uniprot,43 uniprot,68 uniprot,152 uniprot,237 uniprot,253 uniprot,264 uniprot,275 uniprot,286 uniprot,296 uniprot,322 uniprot,332 uniprot,337 uniprot,349 uniprot,358 uniprot,371 uniprot,380 uniprot,382 uniprot,392 uniprot,413 uniprot,424 uniprot,453 uniprot,494 uniprot,529 uniprot,544 uniprot,573 uniprot,669 uniprot,714 uniprot,721 uniprot,738 uniprot,750 uniprot,779 uniprot,924 uniprot,996 uniprot,1016 uniprot,1029 uniprot,1231 uniprot,1437 uniprot,1503 uniprot,1509 uniprot,1513 uniprot,1591 uniprot,1669 uniprot,1702 uniprot,1817 uniprot,1845 uniprot,1910 uniprot,1964 uniprot,1976 uniprot,1985 uniprot,1996 uniprot-annotated uniprot,1279 unipstruct.bb uniprot,1818 uniptogenome.over.chain.gz uniprot,1896 uniprot,1912 uniprot,1934 uniptogenomelift.psl.gz uniprot,1899 unique uniprot,1600 uniref50 brhInparalog,27 brhInparalog,49 unit geneid,174 universal uniprot,1993 university chainDm2,411 chainDm2,445 netDm2,416 netDm2,430 unknown rmsk,173 unprocessed chainDm2,196 est,605 intronEst,641 unsequenced chainDm2,153 unspliced est,8 est,634 intronEst,117 intronEst,670 up blastDm2FB,79 blastHg17KG,68 rmsk,117 update est,786 intronEst,797 mrna,503 rmsk,82 rmsk,94 rmsk,307 xenoMrna,508 xenoRefGene,344 updated uniprot,1566 xenoRefGene,41 us uniprot,687 uniprot,1441 use est,166 gold,201 intronEst,241 mrna,112 uniprot,991 uniprot,1021 uniprot,1073 uniprot,1225 xenoMrna,186 used augustusGene,146 augustusGene,174 augustusGene,183 augustusGene,231 augustusGene,246 blastHg17KG,191 brhInparalog,67 ensGene,36 est,123 est,275 est,334 est,573 genscan,159 gold,189 intronEst,198 intronEst,339 intronEst,398 intronEst,609 mrna,69 mrna,221 mrna,280 netDm2,50 netDm2,285 netDm2,337 netDm2,370 rmsk,213 rmsk,258 rmsk,298 uniprot,1062 uniprot,1087 uniprot,1118 uniprot,1198 uniprot,1210 uniprot,1319 uniprot,1351 uniprot,1550 uniprot,1626 uniprot,1801 uniprot,1883 xenoMrna,143 xenoMrna,284 xenoMrna,343 useful microsat,20 netDm2,36 netDm2,167 user est,393 intronEst,457 mrna,339 xenoMrna,402 users uniprot,406 uniprot,684 xenoRefGene,150 uses rmsk,79 using augustusGene,294 blastDm2FB,64 blastDm2FB,89 blastDm2FB,102 blastHg17KG,53 blastHg17KG,78 blastHg17KG,91 brhInparalog,52 brhInparalog,87 chainDm2,25 ensGene,64 est,656 geneid,83 geneid,162 gold,50 intronEst,692 microsat,90 mrna,396 netDm2,259 rmsk,15 rmsk,249 scaffolds,53 uniprot,217 uniprot,722 uniprot,1526 xenoMrna,429 xenoRefGene,227 usually est,40 intronEst,51 utilities blastDm2FB,199 blastHg17KG,190 v ensGene,185 v3.1 augustusGene,7 valid est,214 intronEst,289 mrna,160 xenoMrna,234 validate xenoRefGene,153 validation genscan,107 value est,285 intronEst,349 mrna,231 xenoMrna,294 variant uniprot,2026 variants uniprot,357 uniprot,415 uniprot,425 uniprot,533 uniprot,943 uniprot,2042 variation microsat,7 rmsk,6 simpleRepeat,8 uniprot,438 variety gc5Base,45 various uniprot,50 vb chainDm2,483 vector est,470 intronEst,506 version augustusGene,23 augustusGene,263 rmsk,58 uniprot,1254 uniprot,1297 uniprot,1576 uniprot,1593 versions augustusGene,279 ensGene,133 rmsk,217 rmsk,233 uniprot,1655 vertebrate xenoMrna,19 vertebrates augustusGene,209 very est,677 intronEst,713 uniprot,977 uniprot,1185 uniprot,1399 uniprot,1402 via uniprot,1293 view est,210 intronEst,285 mrna,156 netDm2,144 xenoMrna,230 viewed est,638 intronEst,674 visible uniprot,147 w blastDm2FB,170 blastDm2FB,172 blastHg17KG,159 blastHg17KG,161 chainDm2,485 chainDm2,505 chainDm2,553 gold,256 netDm2,482 netDm2,530 waack augustusGene,318 want uniprot,690 was augustusGene,230 augustusGene,245 augustusGene,264 augustusGene,280 blastDm2FB,192 blastHg17KG,183 brhInparalog,66 chainDm2,406 chainDm2,441 est,699 est,728 gold,34 gold,48 intronEst,735 intronEst,767 microsat,108 mrna,415 mrna,445 netDm2,283 netDm2,328 netDm2,336 netDm2,356 netDm2,368 netDm2,393 netDm2,425 rmsk,12 scaffolds,37 scaffolds,51 simpleRepeat,68 uniprot,799 uniprot,815 uniprot,1354 uniprot,1625 uniprot,1941 xenoMrna,447 xenoMrna,478 xenoRefGene,254 xenoRefGene,283 way uniprot,1459 ways gc5Base,47 we ensGene,146 uniprot,1224 uniprot,1453 uniprot,1859 webb chainDm2,420 chainDm2,457 netDm2,439 weekly xenoRefGene,42 weight geneid,85 well augustusGene,78 est,542 est,565 genscan,36 intronEst,578 intronEst,601 rmsk,54 were augustusGene,50 augustusGene,66 augustusGene,125 augustusGene,149 augustusGene,182 blastDm2FB,57 blastDm2FB,82 blastDm2FB,99 blastDm2FB,126 blastDm2FB,148 blastDm2FB,205 blastHg17KG,47 blastHg17KG,71 blastHg17KG,88 blastHg17KG,115 blastHg17KG,137 blastHg17KG,196 brhInparalog,85 chainDm2,306 chainDm2,313 chainDm2,319 chainDm2,329 chainDm2,381 chainDm2,396 chainDm2,429 chainDm2,471 ensGene,13 est,592 est,651 est,723 gc5Base,79 gold,61 intronEst,628 intronEst,687 mrna,391 mrna,439 netDm2,254 netDm2,412 netDm2,448 netDm2,466 scaffolds,64 uniprot,782 uniprot,794 uniprot,930 uniprot,937 uniprot,1386 uniprot,1471 uniprot,1505 uniprot,1515 xenoMrna,422 xenoMrna,472 xenoRefGene,220 xenoRefGene,237 xenoRefGene,278 wget uniprot,1903 uniprot,1913 wheeler est,783 intronEst,794 mrna,500 xenoMrna,505 when augustusGene,188 augustusGene,238 est,146 est,156 est,684 intronEst,35 intronEst,221 intronEst,231 intronEst,720 mrna,92 mrna,102 mrna,400 netDm2,95 uniprot,951 uniprot,1202 uniprot,1632 xenoMrna,166 xenoMrna,176 xenoMrna,432 xenoRefGene,239 where chainDm2,160 gold,208 uniprot,1192 whether netDm2,352 which augustusGene,159 augustusGene,227 chainDm2,239 est,106 est,233 est,499 est,524 est,671 geneid,32 intronEst,181 intronEst,308 intronEst,535 intronEst,560 intronEst,707 mrna,179 netDm2,317 rmsk,21 rmsk,64 rmsk,129 rmsk,142 rmsk,167 simpleRepeat,27 uniprot,158 uniprot,1380 uniprot,1768 xenoMrna,253 while chainDm2,184 white gap,64 whole gold,40 gold,258 netDm2,152 scaffolds,43 whose xenoMrna,80 wildcards est,271 intronEst,335 mrna,217 xenoMrna,280 will est,304 est,322 est,351 est,368 gap,24 intronEst,368 intronEst,386 intronEst,415 intronEst,432 mrna,250 mrna,268 mrna,297 mrna,314 uniprot,537 uniprot,665 uniprot,754 uniprot,1142 uniprot,1162 xenoMrna,313 xenoMrna,331 xenoMrna,360 xenoMrna,377 windows gc5Base,7 gc5Base,28 wish est,235 intronEst,310 mrna,181 xenoMrna,255 xenoRefGene,207 with augustusGene,127 augustusGene,322 blastDm2FB,59 blastDm2FB,84 blastHg17KG,49 blastHg17KG,73 brhInparalog,29 brhInparalog,48 brhInparalog,72 chainDm2,175 chainDm2,186 chainDm2,315 chainDm2,422 chainDm2,454 chainDm2,556 est,105 est,501 est,639 est,676 est,719 gap,17 gc5Base,35 geneid,62 intronEst,180 intronEst,537 intronEst,675 intronEst,712 intronEst,755 microsat,69 microsat,76 mrna,435 netDm2,271 netDm2,395 netDm2,441 netDm2,533 rmsk,195 simpleRepeat,52 uniprot,183 uniprot,258 uniprot,280 uniprot,458 uniprot,639 uniprot,716 uniprot,788 uniprot,946 uniprot,1475 uniprot,1481 uniprot,1496 uniprot,1501 uniprot,1718 uniprot,1948 xenoMrna,468 xenoRefGene,230 xenoRefGene,274 within est,139 est,552 est,708 gold,248 intronEst,214 intronEst,588 intronEst,744 mrna,85 mrna,424 simpleRepeat,37 uniprot,1109 uniprot,1313 uniprot,1345 uniprot,1488 uniprot,1806 xenoMrna,159 xenoMrna,457 xenoRefGene,84 xenoRefGene,263 without uniprot,139 wj chainDm2,499 chainDm2,541 est,802 intronEst,809 mrna,519 netDm2,476 netDm2,518 xenoMrna,520 xenoRefGene,304 words uniprot,1201 worldwide est,745 intronEst,784 mrna,462 xenoMrna,495 xenoRefGene,294 would ensGene,147 written blastDm2FB,193 blastDm2FB,206 blastHg17KG,184 blastHg17KG,197 genscan,19 microsat,109 simpleRepeat,69 x uniprot,1923 xml uniprot,1510 y ensGene,177 yap chainDm2,482 years uniprot,933 yip uniprot,2010 yl uniprot,2011 you est,234 intronEst,309 mrna,180 uniprot,655 uniprot,689 uniprot,1443 xenoMrna,254 xenoRefGene,206 your uniprot,1783 z chainDm2,545 netDm2,522 zdobnov brhInparalog,20 brhInparalog,95 zebrafish augustusGene,202 augustusGene,278 zhang chainDm2,418 chainDm2,544 netDm2,437 netDm2,521 zheng chainDm2,417 netDm2,436 zinc uniprot,326 zoomed-in genscan,103