The GENCODE Genes track (version M37, Feb 2025 pre-release) shows high-quality manual annotations merged with evidence-based automated annotations across the entire mouse genome generated by the GENCODE project. The GENCODE gene set presents a full merge between HAVANA manual annotation process and Ensembl automatic annotation pipeline. Priority is given to the manually curated HAVANA annotation using predicted Ensembl annotations when there are no corresponding manual annotations. The M37 annotation was carried out on genome assembly GRCm39 (mm39).
The Ensembl human and mouse data sets are the same gene annotations as GENCODE for the corresponding release.
GENCODE GFF3 and GTF files are available from the GENCODE release M37 site.
GENCODE version M37 corresponds to Ensembl 114.
See also: The GENCODE Project