UCSC Genome Browser assembly ID: oxyTri2
Sequencing/Assembly provider ID: Washington University Genome Sequencing Center
Assembly date: Sep. 2015
Accession ID: GCA_001297925.1
NCBI Genome information:
NCBI genome/13412 (Oxytricha trifallax)
NCBI Assembly information:
NCBI assembly/2342058 (Washington University Genome Sequencing Center)
BioProject information: NCBI Bioproject: 74629
Search the assembly:
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By position or search term: Use the "position or search term"
box to find areas of the genome associated with many different attributes, such
as a specific chromosomal coordinate range; mRNA, EST, or STS marker names; or
keywords from the GenBank description of an mRNA.
More information, including sample
queries.
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By gene name: Type a gene name into the "search term" box,
choose your gene from the drop-down list, then press "submit" to go
directly to the assembly location associated with that gene.
More information.
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By track type: Click the "track search" button
to find Genome Browser tracks that match specific selection criteria.
More information.
Sequences included:
- chrMACjrb510 - genbank assembly
GCA_001297925.1,
Washington University Genome Sequencing Center, assembly
ASM129792v1, 57,457,034 bases in 22,458 sequences assembled
as an artificial chromosome with 50 N nucleotides added between each sequence.
see also: Cell Volume 158, Issue 5, 28 August 2014, Pages 1187-1198
- chrMACsb510 - genbank assembly
GCA_000295675.1,
Washington University Genome Sequencing Center, assembly
oxytricha_asm_v1.1, 67,158,112 bases in 22,363 sequences assembled
as an artificial chromosome with 50 N nucleotides added between each sequence.
see also: Cell Volume 158, Issue 5, 28 August 2014, Pages 1187-1198
- chrMICjrb310 - genbank assembly
GCA_000711775.1,
Princeton University
Oxytricha_MIC_v2.0, 496,291,018 bases in 25,7203 sequences assembled
as an artificial chromosome with 50 N nucleotides added between each sequence.
see also: Cell. 2014 Aug 28;158(5):1187-98. doi: 10.1016/j.cell.2014.07.034.
- chrM - 69,800 nuclotides, mitochondrial sequence, accession
JN383843.1, Princeton University, see also:
Genome Biol Evol (2012) 4 (2): 136-154
- chrmO - 5,280 nucleotides, mitochondrial associated plasmid, accession
JN383843.1, Princeton University, see also:
Genome Biol Evol (2012) 4 (2): 136-154
Download sequence and annotation data: