This track shows the NCBI clone end predictions from the NCBI Clone DB database.
End information was extracted from the Clone DB FTP site ftp.ncbi.nih.gov/repository/clone/reports/Homo_sapiens/ *.GCF_000001405.26.106.*.gff files.
Click through on displayed items to the Clone DB database information, including Clone DB distributor references.
UCSC filtered the NCBI Clone DB mapped ends to drop ends that mapped to a region that was three times longer than the median size of the clones in the library.
clone information from NCBI Clone DB and UCSC mapping statistics | ||||||
---|---|---|---|---|---|---|
library name |
total clones |
total end sequences |
NCBI mapped ends |
UCSC filtered ends |
UCSC dropped |
per-cent dropped |
ABC8 | 2,007,047 | 3,888,476 | 1,205,466 | 1,192,784 | 12,682 | % 1.05 |
WI2 | 1,122,564 | 2,298,885 | 589,547 | 582,843 | 6,704 | % 1.14 |
ABC12 | 1,120,939 | 2,169,280 | 778,216 | 771,827 | 6,389 | 0.82 |
ABC7 | 1,116,966 | 2,152,975 | 650,329 | 644,071 | 6,258 | 0.96 |
ABC9 | 1,065,503 | 2,084,892 | 757,644 | 750,648 | 6,996 | 0.92 |
ABC10 | 1,062,082 | 2,121,489 | 788,344 | 781,331 | 7,013 | 0.89 |
ABC14 | 1,042,929 | 2,089,193 | 846,055 | 839,126 | 6,929 | 0.82 |
ABC13 | 1,009,643 | 2,057,345 | 811,829 | 803,589 | 8,240 | 1.01 |
ABC11 | 998,880 | 1,966,644 | 730,565 | 724,864 | 5,701 | 0.78 |
ABC23 | 942,133 | 1,535,766 | 437,098 | 433,896 | 3,202 | 0.73 |
ABC16 | 907,948 | 1,534,288 | 452,316 | 449,101 | 3,215 | 0.71 |
ABC24 | 835,600 | 1,383,475 | 399,056 | 395,776 | 3,280 | 0.82 |
ABC27 | 768,336 | 1,229,804 | 334,232 | 331,822 | 2,410 | 0.72 |
ABC18 | 743,640 | 1,204,811 | 325,150 | 322,904 | 2,246 | 0.69 |
COR2A | 723,569 | 1,441,881 | 583,327 | 578,578 | 4,749 | 0.81 |
ABC22 | 519,274 | 780,151 | 189,988 | 188,743 | 1,245 | 0.66 |
ABC21 | 436,930 | 680,160 | 182,214 | 180,973 | 1,241 | 0.68 |
RP11 | 292,975 | 394,813 | 86,875 | 85,903 | 972 | 1.12 |
COR02 | 272,396 | 546,984 | 208,377 | 206,782 | 1,595 | 0.77 |
CTD | 226,848 | 403,688 | 96,594 | 94,941 | 1,653 | 1.71 |
CH17 | 176,209 | 325,659 | 105,805 | 105,060 | 745 | 0.70 |
ABC20 | 49,132 | 80,350 | 24,720 | 24,474 | 246 | 1.00 |